Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35469.t1 | XP_013460940.1 | 98.5 | 528 | 8 | 0 | 1 | 528 | 1 | 528 | 2.30E-302 | 1047.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35469.t1 | F4JF21 | 64.4 | 533 | 181 | 3 | 1 | 528 | 1 | 529 | 2.0e-198 | 693.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35469.t1 | A0A072UYW5 | 98.5 | 528 | 8 | 0 | 1 | 528 | 1 | 528 | 1.7e-302 | 1047.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene35469 | 0.881196 | 2.93E-70 | -1.69E-46 |
| MS.gene050226 | MS.gene35469 | 0.849038 | 4.18E-60 | -1.69E-46 |
| MS.gene050227 | MS.gene35469 | 0.850355 | 1.79E-60 | -1.69E-46 |
| MS.gene050228 | MS.gene35469 | 0.857446 | 1.62E-62 | -1.69E-46 |
| MS.gene050330 | MS.gene35469 | -0.800827 | 1.20E-48 | -1.69E-46 |
| MS.gene050558 | MS.gene35469 | 0.829899 | 3.98E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene35469 | 0.855694 | 5.31E-62 | -1.69E-46 |
| MS.gene050820 | MS.gene35469 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene051257 | MS.gene35469 | 0.841283 | 5.22E-58 | -1.69E-46 |
| MS.gene051662 | MS.gene35469 | 0.804466 | 2.13E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene35469 | 0.8168 | 4.59E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene35469 | 0.836606 | 8.48E-57 | -1.69E-46 |
| MS.gene052176 | MS.gene35469 | 0.817761 | 2.79E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene35469 | 0.899539 | 1.79E-77 | -1.69E-46 |
| MS.gene053836 | MS.gene35469 | 0.829242 | 5.74E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene35469 | 0.894967 | 1.50E-75 | -1.69E-46 |
| MS.gene056875 | MS.gene35469 | 0.824981 | 6.01E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene35469 | 0.818614 | 1.79E-52 | -1.69E-46 |
| MS.gene057121 | MS.gene35469 | 0.861653 | 8.82E-64 | -1.69E-46 |
| MS.gene058002 | MS.gene35469 | 0.811662 | 6.26E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene35469 | 0.810602 | 1.06E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene35469 | 0.824823 | 6.55E-54 | -1.69E-46 |
| MS.gene058757 | MS.gene35469 | 0.801961 | 7.03E-49 | -1.69E-46 |
| MS.gene058833 | MS.gene35469 | 0.861555 | 9.45E-64 | -1.69E-46 |
| MS.gene059247 | MS.gene35469 | 0.847547 | 1.08E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene35469 | 0.803195 | 3.91E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene35469 | -0.818553 | 1.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35469.t1 | MTR_3g075050 | 98.864 | 528 | 6 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1070 |
| MS.gene35469.t1 | MTR_3g075050 | 98.750 | 480 | 6 | 0 | 1 | 480 | 1 | 480 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35469.t1 | AT3G48500 | 71.402 | 535 | 140 | 4 | 1 | 528 | 1 | 529 | 0.0 | 781 |
| MS.gene35469.t1 | AT3G48500 | 67.730 | 564 | 140 | 5 | 1 | 528 | 1 | 558 | 0.0 | 765 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGAGGGTTTAAGGTTTA+AGG | 0.114801 | 3.4:+73662430 | None:intergenic |
| CTTCCTTCCATAGTTTCTTA+TGG | 0.175288 | 3.4:+73652168 | None:intergenic |
| GGAATAAGGGAGAGGGTTTA+AGG | 0.214064 | 3.4:+73662423 | None:intergenic |
| TGGTGGATGACGGTGGAATA+AGG | 0.231461 | 3.4:+73662409 | None:intergenic |
| GGAAGCTAATAAGGATTTAT+TGG | 0.236286 | 3.4:-73661787 | MS.gene35469:CDS |
| GGCGAAGCAGTTTGAGATTA+AGG | 0.241674 | 3.4:-73662057 | MS.gene35469:CDS |
| AACCAATCATTGTTCTTTAT+AGG | 0.253075 | 3.4:+73660077 | None:intergenic |
| TAAAGAACAATGATTGGTTT+TGG | 0.254290 | 3.4:-73660073 | MS.gene35469:CDS |
| TACATCAGATGATCTATATT+TGG | 0.254545 | 3.4:+73658400 | None:intergenic |
| GGTTTAAGGTTTAAGGGTTT+AGG | 0.271336 | 3.4:+73662437 | None:intergenic |
| GAAGAAGAAGATTGAGGAAA+TGG | 0.271584 | 3.4:-73662102 | MS.gene35469:CDS |
| TGCTTCGTCTTCAGATTCTT+TGG | 0.272263 | 3.4:+73662283 | None:intergenic |
| ATTGGAAGAGGAATCTTATA+AGG | 0.274488 | 3.4:-73661769 | MS.gene35469:intron |
| AGTGACGGAAGAGGAGTATT+TGG | 0.296475 | 3.4:-73662078 | MS.gene35469:CDS |
| CGGAGGAGTTGGAGACTAAA+TGG | 0.297749 | 3.4:-73662025 | MS.gene35469:CDS |
| TCTTCCTCTGGCTTGTCTCC+TGG | 0.300554 | 3.4:+73657921 | None:intergenic |
| GAAAGTGAAGAGATAAGAAT+TGG | 0.303313 | 3.4:+73662460 | None:intergenic |
| GTTTAAGGTTTAAGGGTTTA+GGG | 0.321489 | 3.4:+73662438 | None:intergenic |
| GTCCGCGCGAATTCGGCTTC+AGG | 0.329940 | 3.4:+73662206 | None:intergenic |
| GGAGAGGGTTTAAGGTTTAA+GGG | 0.330041 | 3.4:+73662431 | None:intergenic |
| TGAGTGGGTGGAAGCTAATA+AGG | 0.337017 | 3.4:-73661796 | MS.gene35469:CDS |
| ATTAATCCTGATAAATATAA+AGG | 0.347698 | 3.4:-73655840 | MS.gene35469:CDS |
| GACCGTCATTGTTGAAATTA+CGG | 0.356334 | 3.4:-73660024 | MS.gene35469:intron |
| GGAGGCGAAGAGAGTGAGGT+TGG | 0.363629 | 3.4:-73661898 | MS.gene35469:CDS |
| TCTTCGTCACGGTGAAATAT+TGG | 0.368899 | 3.4:+73658236 | None:intergenic |
| TGAGATTAAGGAAGATGTTC+CGG | 0.369550 | 3.4:-73662045 | MS.gene35469:CDS |
| AGCGAGATCCTTATCGCTTC+CGG | 0.369751 | 3.4:-73658450 | MS.gene35469:CDS |
| TTGGCCTCCAAGAGGGTGGG+AGG | 0.370988 | 3.4:-73661964 | MS.gene35469:CDS |
| TTCCTATAAAGAACAATGAT+TGG | 0.376316 | 3.4:-73660079 | MS.gene35469:CDS |
| TGTTAAAGAGCTGGACTTAG+AGG | 0.378218 | 3.4:-73652633 | MS.gene35469:CDS |
| ACGAAGCACGTCGCCGCAAC+TGG | 0.379056 | 3.4:-73662268 | MS.gene35469:CDS |
| GAATGTTGAACCCTAGGTAT+AGG | 0.380725 | 3.4:-73662124 | MS.gene35469:CDS |
| TGGAGGAAGGTTTCGTCGAC+GGG | 0.384013 | 3.4:+73662323 | None:intergenic |
| TACTAATCCAGATGAATTGC+GGG | 0.389911 | 3.4:-73658213 | MS.gene35469:intron |
| GAGACTCGTCCGCGCGAATT+CGG | 0.391123 | 3.4:+73662199 | None:intergenic |
| GGTGGATGACGGTGGAATAA+GGG | 0.391608 | 3.4:+73662410 | None:intergenic |
| GTGCAAACCCGCAATTCATC+TGG | 0.394940 | 3.4:+73658206 | None:intergenic |
| AAAGTGAAGAGATAAGAATT+GGG | 0.395883 | 3.4:+73662461 | None:intergenic |
| CGATCCACCTCCCACCCTCT+TGG | 0.399413 | 3.4:+73661957 | None:intergenic |
| TCCTCCCAGGGTGATAATCT+TGG | 0.407958 | 3.4:+73661635 | None:intergenic |
| AGTTGGTTCCGCCGAGGGAT+TGG | 0.408224 | 3.4:-73661983 | MS.gene35469:CDS |
| AACGAAGTTCGATCGGGAAC+CGG | 0.411671 | 3.4:+73658431 | None:intergenic |
| TACAGCTCCATAAGAAACTA+TGG | 0.413741 | 3.4:-73652175 | MS.gene35469:intron |
| GAAAATAGAGGTTCTTCCTC+TGG | 0.426046 | 3.4:+73657909 | None:intergenic |
| AGGTTGGAGGATATTGAAAA+TGG | 0.426184 | 3.4:-73661882 | MS.gene35469:CDS |
| AAGAAGAAGATTGAGGAAAT+GGG | 0.426271 | 3.4:-73662101 | MS.gene35469:CDS |
| CAACTGGATCGAACGCGGTT+GGG | 0.427640 | 3.4:-73662252 | MS.gene35469:CDS |
| TGAAACTGATGATGTGTGTT+TGG | 0.437905 | 3.4:-73661850 | MS.gene35469:CDS |
| TCGAACGCGGTTGGGCTCCA+TGG | 0.438642 | 3.4:-73662244 | MS.gene35469:CDS |
| ATCGGGAACCGGAAGCGATA+AGG | 0.446047 | 3.4:+73658442 | None:intergenic |
| TAATCACCCATATGTTGAAA+AGG | 0.454207 | 3.4:-73657886 | MS.gene35469:intron |
| GGAAGATGTTCCGGAGGAGT+TGG | 0.457370 | 3.4:-73662036 | MS.gene35469:CDS |
| TATTCGTGAAGCGCATAAGA+TGG | 0.461672 | 3.4:-73661919 | MS.gene35469:CDS |
| TCCACCTCCCACCCTCTTGG+AGG | 0.462311 | 3.4:+73661960 | None:intergenic |
| GTGAAATAGCTTACTTGGCC+AGG | 0.463440 | 3.4:+73661452 | None:intergenic |
| TCTTCTTCTTCCTATACCTA+GGG | 0.467526 | 3.4:+73662114 | None:intergenic |
| GGGGCATTTGTTGACATTGG+TGG | 0.468311 | 3.4:-73660803 | MS.gene35469:CDS |
| ACAACTTTGCATCTCTATCA+AGG | 0.473424 | 3.4:-73660824 | MS.gene35469:CDS |
| GCCTCCAAGAGGGTGGGAGG+TGG | 0.474279 | 3.4:-73661961 | MS.gene35469:CDS |
| GGCGAAGAGAGTGAGGTTGG+AGG | 0.479470 | 3.4:-73661895 | MS.gene35469:CDS |
| TAATAAGGATTTATTGGAAG+AGG | 0.483601 | 3.4:-73661781 | MS.gene35469:CDS |
| GGGGAATTCATCGGAGGTGA+AGG | 0.497266 | 3.4:+73662343 | None:intergenic |
| GGAAATGGGAGTGACGGAAG+AGG | 0.499634 | 3.4:-73662087 | MS.gene35469:CDS |
| GCAACTGGATCGAACGCGGT+TGG | 0.499741 | 3.4:-73662253 | MS.gene35469:CDS |
| GACTAAATGGGCAGGACCGT+TGG | 0.500515 | 3.4:-73662012 | MS.gene35469:CDS |
| CGAACGCGGTTGGGCTCCAT+GGG | 0.501706 | 3.4:-73662243 | MS.gene35469:CDS |
| GGTGGTTTGCGGTGGAGTAG+AGG | 0.501768 | 3.4:+73662386 | None:intergenic |
| GGTGAAGTTGGTTCCGCCGA+GGG | 0.501884 | 3.4:-73661988 | MS.gene35469:CDS |
| TTGGAGGAAGGTTTCGTCGA+CGG | 0.503010 | 3.4:+73662322 | None:intergenic |
| AGGACCGTTGGTGGTGAAGT+TGG | 0.505436 | 3.4:-73662000 | MS.gene35469:CDS |
| ATCTTCTTCTTCCTATACCT+AGG | 0.506020 | 3.4:+73662113 | None:intergenic |
| CAAGGGGCATTTGTTGACAT+TGG | 0.506627 | 3.4:-73660806 | MS.gene35469:CDS |
| GAAAACAAGTGTTAAAGAGC+TGG | 0.511285 | 3.4:-73652642 | MS.gene35469:CDS |
| GATTGAGGAAATGGGAGTGA+CGG | 0.512092 | 3.4:-73662093 | MS.gene35469:CDS |
| CGGTGGTGAGAGGTGGTTTG+CGG | 0.516980 | 3.4:+73662375 | None:intergenic |
| GTATAGGAAGAAGAAGATTG+AGG | 0.517620 | 3.4:-73662108 | MS.gene35469:CDS |
| GAGCTACCATTCTATTATCC+TGG | 0.521386 | 3.4:-73661470 | MS.gene35469:CDS |
| AAGATTATCACCCTGGGAGG+AGG | 0.522356 | 3.4:-73661633 | MS.gene35469:CDS |
| GGAGTAGAGGTGGTGGATGA+CGG | 0.524591 | 3.4:+73662399 | None:intergenic |
| CATTTAGTCTCCAACTCCTC+CGG | 0.524895 | 3.4:+73662026 | None:intergenic |
| TCCACAAAACGAAGTTCGAT+CGG | 0.527234 | 3.4:+73658424 | None:intergenic |
| GATTCGCCATCACATAAAAG+TGG | 0.529030 | 3.4:-73660051 | MS.gene35469:CDS |
| TATGGGTGATTAGAAAATAG+AGG | 0.529683 | 3.4:+73657897 | None:intergenic |
| GGGATTGGCCTCCAAGAGGG+TGG | 0.530355 | 3.4:-73661968 | MS.gene35469:CDS |
| TGGAAGGAAGCAAAGGATAG+AGG | 0.530783 | 3.4:-73652155 | MS.gene35469:CDS |
| TGTGTGTTTGGATAGGTATA+AGG | 0.534464 | 3.4:-73661838 | MS.gene35469:CDS |
| TTGCGGTGGAGTAGAGGTGG+TGG | 0.538797 | 3.4:+73662392 | None:intergenic |
| AGGGCCGAAGGTTTGGAGGA+AGG | 0.539281 | 3.4:+73662310 | None:intergenic |
| ATGAATATGATTTCATGCAT+TGG | 0.539326 | 3.4:-73652088 | MS.gene35469:CDS |
| GGAGGAGTTGGAGACTAAAT+GGG | 0.540427 | 3.4:-73662024 | MS.gene35469:CDS |
| CACCCTGGGAGGAGGAAAAG+AGG | 0.541138 | 3.4:-73661625 | MS.gene35469:CDS |
| GAAAAGAGGCAAGGATTACA+AGG | 0.542147 | 3.4:-73661611 | MS.gene35469:CDS |
| CCACAAAACGAAGTTCGATC+GGG | 0.542762 | 3.4:+73658425 | None:intergenic |
| CCTCTTGGAGGCCAATCCCT+CGG | 0.551566 | 3.4:+73661972 | None:intergenic |
| GGATTGGCCTCCAAGAGGGT+GGG | 0.552876 | 3.4:-73661967 | MS.gene35469:CDS |
| TGGTGAGAGGTGGTTTGCGG+TGG | 0.553772 | 3.4:+73662378 | None:intergenic |
| ATTTGCAGCGTGACTGTGGA+AGG | 0.554574 | 3.4:-73657965 | MS.gene35469:intron |
| CGAGGGATTGGCCTCCAAGA+GGG | 0.557359 | 3.4:-73661971 | MS.gene35469:CDS |
| TTCGTCGACGGGGAATTCAT+CGG | 0.563473 | 3.4:+73662334 | None:intergenic |
| CAACTTTGCATCTCTATCAA+GGG | 0.567918 | 3.4:-73660823 | MS.gene35469:CDS |
| AAGTGAAGAGATAAGAATTG+GGG | 0.569311 | 3.4:+73662462 | None:intergenic |
| CCTATTCCTAGAAAAGATCC+AGG | 0.570936 | 3.4:-73657939 | MS.gene35469:CDS |
| ATTGCAGATTTGTGTGGGGA+AGG | 0.573789 | 3.4:-73660849 | MS.gene35469:intron |
| TAAATGGGCAGGACCGTTGG+TGG | 0.575306 | 3.4:-73662009 | MS.gene35469:CDS |
| ACTTGGCCAGGATAATAGAA+TGG | 0.577181 | 3.4:+73661464 | None:intergenic |
| CATTGATCAGAGACATCAGC+TGG | 0.577556 | 3.4:-73652040 | None:intergenic |
| AGAGGCAAGGATTACAAGGA+TGG | 0.582813 | 3.4:-73661607 | MS.gene35469:CDS |
| TCGTCACGGTGAAATATTGG+TGG | 0.584435 | 3.4:+73658239 | None:intergenic |
| TTAGCGACGGTGGTGAGAGG+TGG | 0.586163 | 3.4:+73662368 | None:intergenic |
| GAAACCTTCCTCCAAACCTT+CGG | 0.586186 | 3.4:-73662314 | MS.gene35469:CDS |
| GGTTTGCGGTGGAGTAGAGG+TGG | 0.586982 | 3.4:+73662389 | None:intergenic |
| AGAAGTTCCTCTGAGCTCGC+CGG | 0.588098 | 3.4:-73662165 | MS.gene35469:CDS |
| GAGTTGGAGACTAAATGGGC+AGG | 0.589652 | 3.4:-73662020 | MS.gene35469:CDS |
| GGAACCAACTTCACCACCAA+CGG | 0.589853 | 3.4:+73661996 | None:intergenic |
| GAAACTATGGAAGGAAGCAA+AGG | 0.590045 | 3.4:-73652162 | MS.gene35469:CDS |
| ATGACGGTGGAATAAGGGAG+AGG | 0.591429 | 3.4:+73662415 | None:intergenic |
| CACCGTAATTTCAACAATGA+CGG | 0.593948 | 3.4:+73660022 | None:intergenic |
| TTTGAAACAGTATAATGAGT+GGG | 0.596431 | 3.4:-73661811 | MS.gene35469:CDS |
| GGCTGCACTTGCTGAGCGTG+AGG | 0.597650 | 3.4:-73652612 | MS.gene35469:intron |
| TAAAATTTGCAGCGTGACTG+TGG | 0.599739 | 3.4:-73657969 | MS.gene35469:intron |
| CTAAAAGCTTCAATCGACTC+CGG | 0.600045 | 3.4:+73662146 | None:intergenic |
| GGAGTGAGAATCTCTTCCCA+TGG | 0.601535 | 3.4:+73662227 | None:intergenic |
| ATTGAAGCGCAATATTGAGA+TGG | 0.601634 | 3.4:-73652111 | MS.gene35469:CDS |
| AGATGGAGGCGAAGAGAGTG+AGG | 0.602803 | 3.4:-73661902 | MS.gene35469:CDS |
| TGGTGAAGTTGGTTCCGCCG+AGG | 0.603337 | 3.4:-73661989 | MS.gene35469:CDS |
| CTGATGATGTGTGTTTGGAT+AGG | 0.603876 | 3.4:-73661845 | MS.gene35469:CDS |
| AACCGCGTTCGATCCAGTTG+CGG | 0.604282 | 3.4:+73662255 | None:intergenic |
| ATACTAATCCAGATGAATTG+CGG | 0.608071 | 3.4:-73658214 | MS.gene35469:CDS |
| GTAGAGGTGGTGGATGACGG+TGG | 0.611103 | 3.4:+73662402 | None:intergenic |
| CGCCGCAACTGGATCGAACG+CGG | 0.614662 | 3.4:-73662257 | MS.gene35469:CDS |
| GATTTAGCGACGGTGGTGAG+AGG | 0.616242 | 3.4:+73662365 | None:intergenic |
| CGTCACGGTGAAATATTGGT+GGG | 0.618017 | 3.4:+73658240 | None:intergenic |
| CTCCTGAAGCCGAATTCGCG+CGG | 0.619073 | 3.4:-73662208 | MS.gene35469:CDS |
| AACTTTGCATCTCTATCAAG+GGG | 0.623804 | 3.4:-73660822 | MS.gene35469:CDS |
| GGAAGCAAAGGATAGAGGTG+AGG | 0.624007 | 3.4:-73652150 | MS.gene35469:CDS |
| CAAGGATTACAAGGATGGCA+TGG | 0.624035 | 3.4:-73661602 | MS.gene35469:intron |
| TGACGGTGGAATAAGGGAGA+GGG | 0.624820 | 3.4:+73662416 | None:intergenic |
| GGAGGAAGGTTTCGTCGACG+GGG | 0.625945 | 3.4:+73662324 | None:intergenic |
| CCGAGGGATTGGCCTCCAAG+AGG | 0.628072 | 3.4:-73661972 | MS.gene35469:CDS |
| CTGGATTAGTATCTTCGTCA+CGG | 0.631090 | 3.4:+73658225 | None:intergenic |
| TAGACCAAGATTATCACCCT+GGG | 0.632469 | 3.4:-73661639 | MS.gene35469:CDS |
| GCTCCATAAGAAACTATGGA+AGG | 0.637472 | 3.4:-73652171 | MS.gene35469:CDS |
| GAAACAGTATAATGAGTGGG+TGG | 0.642722 | 3.4:-73661808 | MS.gene35469:CDS |
| CTTGGAGGCCAATCCCTCGG+CGG | 0.651664 | 3.4:+73661975 | None:intergenic |
| TGGGAGGAGGAAAAGAGGCA+AGG | 0.652268 | 3.4:-73661620 | MS.gene35469:CDS |
| TTAGACCAAGATTATCACCC+TGG | 0.654734 | 3.4:-73661640 | MS.gene35469:CDS |
| TCGTGAAGCGCATAAGATGG+AGG | 0.656006 | 3.4:-73661916 | MS.gene35469:CDS |
| GTCGACGGGGAATTCATCGG+AGG | 0.657587 | 3.4:+73662337 | None:intergenic |
| ATTCGCCATCACATAAAAGT+GGG | 0.657615 | 3.4:-73660050 | MS.gene35469:CDS |
| AGATCCAGGAGACAAGCCAG+AGG | 0.658333 | 3.4:-73657925 | MS.gene35469:CDS |
| ACATTGGTGGAGTATACGAT+GGG | 0.660404 | 3.4:-73660790 | MS.gene35469:intron |
| TTTCATTGCAGATTTGTGTG+GGG | 0.663073 | 3.4:-73660853 | MS.gene35469:intron |
| ATCGACTCCGGCGAGCTCAG+AGG | 0.664940 | 3.4:+73662158 | None:intergenic |
| GATTAAGGAAGATGTTCCGG+AGG | 0.668281 | 3.4:-73662042 | MS.gene35469:CDS |
| GGTGAAGGATTTAGCGACGG+TGG | 0.677063 | 3.4:+73662358 | None:intergenic |
| GGAGGTGAAGGATTTAGCGA+CGG | 0.690162 | 3.4:+73662355 | None:intergenic |
| ACCAAGATTATCACCCTGGG+AGG | 0.694247 | 3.4:-73661636 | MS.gene35469:CDS |
| GACATTGGTGGAGTATACGA+TGG | 0.698114 | 3.4:-73660791 | MS.gene35469:CDS |
| GCGCGGACGAGTCTCAACGA+AGG | 0.736916 | 3.4:-73662191 | MS.gene35469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73652041 | 73662495 | 73652041 | ID=MS.gene35469 |
| chr3.4 | mRNA | 73652041 | 73662495 | 73652041 | ID=MS.gene35469.t1;Parent=MS.gene35469 |
| chr3.4 | exon | 73661770 | 73662495 | 73661770 | ID=MS.gene35469.t1.exon1;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73661770 | 73662495 | 73661770 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73661603 | 73661662 | 73661603 | ID=MS.gene35469.t1.exon2;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73661603 | 73661662 | 73661603 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73661466 | 73661495 | 73661466 | ID=MS.gene35469.t1.exon3;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73661466 | 73661495 | 73661466 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73660791 | 73660864 | 73660791 | ID=MS.gene35469.t1.exon4;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73660791 | 73660864 | 73660791 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73660025 | 73660106 | 73660025 | ID=MS.gene35469.t1.exon5;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73660025 | 73660106 | 73660025 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73658403 | 73658476 | 73658403 | ID=MS.gene35469.t1.exon6;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73658403 | 73658476 | 73658403 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73658214 | 73658280 | 73658214 | ID=MS.gene35469.t1.exon7;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73658214 | 73658280 | 73658214 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73657887 | 73657979 | 73657887 | ID=MS.gene35469.t1.exon8;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73657887 | 73657979 | 73657887 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73655734 | 73655910 | 73655734 | ID=MS.gene35469.t1.exon9;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73655734 | 73655910 | 73655734 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73652613 | 73652663 | 73652613 | ID=MS.gene35469.t1.exon10;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73652613 | 73652663 | 73652613 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| chr3.4 | exon | 73652041 | 73652192 | 73652041 | ID=MS.gene35469.t1.exon11;Parent=MS.gene35469.t1 |
| chr3.4 | CDS | 73652041 | 73652192 | 73652041 | ID=cds.MS.gene35469.t1;Parent=MS.gene35469.t1 |
| Gene Sequence |
| Protein sequence |
