AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35828

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35828.t1 MTR_2g088190 94.717 265 14 0 1 265 1 265 0.0 511
MS.gene35828.t1 MTR_2g088220 86.842 266 34 1 1 265 1 266 2.45e-167 467
MS.gene35828.t1 MTR_2g088200 83.835 266 42 1 1 265 1 266 2.11e-165 462
MS.gene35828.t1 MTR_7g406860 43.023 258 144 3 5 262 6 260 1.83e-65 207
MS.gene35828.t1 MTR_8g010030 42.085 259 147 3 6 264 5 260 6.64e-64 203
MS.gene35828.t1 MTR_8g009980 44.106 263 138 6 5 264 4 260 1.71e-62 200
MS.gene35828.t1 MTR_8g009820 44.528 265 133 8 5 264 63 318 8.71e-59 192
MS.gene35828.t1 MTR_8g010020 51.337 187 85 3 80 264 46 228 1.26e-57 186
MS.gene35828.t1 MTR_8g009830 42.205 263 141 7 5 264 4 258 6.01e-56 183
MS.gene35828.t1 MTR_8g009840 42.966 263 139 7 5 264 4 258 1.10e-54 184
MS.gene35828.t1 MTR_0011s0280 37.594 266 154 7 5 264 3 262 5.66e-52 173
MS.gene35828.t1 MTR_4g082970 40.520 269 143 8 3 264 8 266 2.12e-51 171
MS.gene35828.t1 MTR_8g010000 37.405 262 132 6 5 264 4 235 1.70e-44 152
MS.gene35828.t1 MTR_8g007325 41.071 224 118 8 5 223 4 218 1.63e-38 134
MS.gene35828.t1 MTR_4g086410 34.783 161 93 4 106 264 385 535 6.30e-19 86.3
MS.gene35828.t1 MTR_4g086400 34.161 161 94 4 106 264 245 395 2.57e-18 84.3
MS.gene35828.t1 MTR_4g086400 34.161 161 94 4 106 264 385 535 3.10e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35828.t1 AT5G16970 43.866 269 128 9 7 264 5 261 8.23e-61 196
MS.gene35828.t1 AT1G26320 43.446 267 136 8 5 264 9 267 1.09e-59 193
MS.gene35828.t1 AT1G65560 41.985 262 141 6 4 260 6 261 7.58e-59 191
MS.gene35828.t1 AT5G16990 44.048 252 128 7 19 264 15 259 2.55e-58 189
MS.gene35828.t1 AT3G03080 43.866 269 131 9 5 264 9 266 1.44e-57 187
MS.gene35828.t1 AT5G17000 42.007 269 133 9 7 264 5 261 1.21e-56 185
MS.gene35828.t1 AT1G26320 42.697 267 133 9 5 264 9 262 3.51e-56 184
MS.gene35828.t1 AT5G37940 42.520 254 131 7 19 264 23 269 3.66e-56 184
MS.gene35828.t1 AT5G38000 43.621 243 123 6 31 264 32 269 3.87e-56 184
MS.gene35828.t1 AT5G38000 43.621 243 123 6 31 264 32 269 4.54e-56 184
MS.gene35828.t1 AT5G16960 42.529 261 131 7 11 264 14 262 3.34e-55 181
MS.gene35828.t1 AT5G16960 42.529 261 131 7 11 264 14 262 3.34e-55 181
MS.gene35828.t1 AT5G37980 42.387 243 126 6 31 264 32 269 7.30e-54 178
MS.gene35828.t1 AT3G59845 41.026 273 143 8 1 264 1 264 1.11e-50 169
MS.gene35828.t1 AT1G65560 47.568 185 94 2 78 260 2 185 4.98e-50 166
MS.gene35828.t1 AT5G16980 54.815 135 61 0 130 264 21 155 7.97e-47 156
MS.gene35828.t1 AT5G16980 54.815 135 61 0 130 264 21 155 7.97e-47 156
MS.gene35828.t1 AT5G16980 54.815 135 61 0 130 264 87 221 2.59e-46 157
MS.gene35828.t1 AT5G38000 40.741 243 111 7 31 264 32 250 1.17e-45 156
MS.gene35828.t1 AT3G59845 52.083 144 69 0 121 264 19 162 1.53e-43 148
MS.gene35828.t1 AT5G17000 40.865 208 103 7 26 224 25 221 1.94e-36 130
MS.gene35828.t1 AT1G49670 36.025 161 91 4 106 264 381 531 6.65e-21 92.4
MS.gene35828.t1 AT1G49670 33.523 176 98 4 106 264 381 554 1.51e-17 82.4

Find 67 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTATCTCGGTTCTTT+AGG 0.209039 2.2:+11041250 MS.gene35828:CDS
AAGCTCATCAAAGAGAATTT+TGG 0.226510 2.2:+11042491 MS.gene35828:CDS
GTTGATATTGTGGAATAAAA+AGG 0.237797 2.2:-11040830 None:intergenic
AACACATTGGATCCTGGCTT+TGG 0.311058 2.2:-11041746 None:intergenic
CGAATTGGACATGGGAGATT+TGG 0.315863 2.2:+11040617 None:intergenic
GTGTTCATATCTGCTGCTTC+TGG 0.322794 2.2:+11041764 MS.gene35828:CDS
CTCACTGTATTTACTATCCT+TGG 0.324250 2.2:-11041125 None:intergenic
GTGATTGTTCCGCGAAGATA+TGG 0.324490 2.2:-11040792 None:intergenic
TCAACGGCTAGATGGTCTTC+AGG 0.338735 2.2:-11040747 None:intergenic
TCCACAATATCAACTTAATC+AGG 0.375511 2.2:+11040839 MS.gene35828:CDS
TCCGAGGTTGGAACACCTTC+AGG 0.383872 2.2:-11040675 None:intergenic
TTACAACATTTGCAGTTGTA+AGG 0.385135 2.2:+11041092 MS.gene35828:CDS
ACACATTGGATCCTGGCTTT+GGG 0.390179 2.2:-11041745 None:intergenic
GATGATATCTCAATATAATA+AGG 0.417882 2.2:+11043400 MS.gene35828:CDS
CCTGGGTTCGCAGCATGGTT+AGG 0.428468 2.2:+11041704 MS.gene35828:CDS
TTTCTAATTATATGAAAAGA+AGG 0.431114 2.2:-11041199 None:intergenic
ACAATCACCGGCACCCTTGA+AGG 0.439753 2.2:+11040807 MS.gene35828:CDS
TAAATAATTTCAGGAGTACC+TGG 0.440097 2.2:+11041686 MS.gene35828:intron
GGAGAGTTTCAACGGCTAGA+TGG 0.442497 2.2:-11040755 None:intergenic
CGCAGCATGGTTAGGAATAG+AGG 0.456840 2.2:+11041712 MS.gene35828:CDS
TGTAGGGTCATTGGCAGCAC+TGG 0.462075 2.2:+11041830 MS.gene35828:CDS
AGGTAAACATCAATACCATC+AGG 0.462166 2.2:-11043302 None:intergenic
GATAGTGAAATCCCATTAGC+AGG 0.467976 2.2:-11041229 None:intergenic
TTGCTAAGATACGAGGATGT+AGG 0.473300 2.2:+11041813 MS.gene35828:CDS
ATGCTAGAATACCACTTTGT+GGG 0.481843 2.2:+11043378 MS.gene35828:CDS
CGAGACCATATCCATTCAAA+AGG 0.487436 2.2:-11041156 None:intergenic
ATACGAGGATGTAGGGTCAT+TGG 0.487753 2.2:+11041821 MS.gene35828:CDS
TCCGTTGATCCATATCTTCG+CGG 0.487808 2.2:+11040783 MS.gene35828:CDS
GTACTAGGAGACCCAAAGCC+AGG 0.490910 2.2:+11041734 MS.gene35828:CDS
CAACGGCTAGATGGTCTTCA+GGG 0.493384 2.2:-11040746 None:intergenic
TCTGCTGCTTCTGGTGCTGT+TGG 0.500057 2.2:+11041773 MS.gene35828:CDS
GGTGCTGTTGGTATGAATGC+TGG 0.505825 2.2:+11041785 MS.gene35828:CDS
TCCTGAAGGTGTTCCAACCT+CGG 0.512018 2.2:+11040674 MS.gene35828:CDS
TTCTAGCATTCTTGTTGACA+TGG 0.514997 2.2:-11043364 None:intergenic
GTCTTCAGGGATTGAATCAT+CGG 0.517771 2.2:-11040733 None:intergenic
TGGTTAGGAATAGAGGTACT+AGG 0.520082 2.2:+11041719 MS.gene35828:CDS
TGCTAAGATACGAGGATGTA+GGG 0.520424 2.2:+11041814 MS.gene35828:CDS
AGTTTAAGATGATCCGAGGT+TGG 0.522459 2.2:-11040687 None:intergenic
AATGCTAGAATACCACTTTG+TGG 0.527279 2.2:+11043377 MS.gene35828:CDS
ATTTCACTATCAAATTATCT+CGG 0.529600 2.2:+11041241 MS.gene35828:CDS
TACAACATTTGCAGTTGTAA+GGG 0.533855 2.2:+11041093 MS.gene35828:CDS
GATATGAACACATTGGATCC+TGG 0.535102 2.2:-11041752 None:intergenic
CAGCACTGGCTCTGATGAGA+AGG 0.546270 2.2:+11041844 MS.gene35828:CDS
ATTTGGTAGAAAACAAAGAA+TGG 0.556601 2.2:+11040634 MS.gene35828:CDS
TATCTTCGCGGAACAATCAC+CGG 0.558813 2.2:+11040795 MS.gene35828:CDS
GATATGGATCAACGGAGAGA+AGG 0.573244 2.2:-11040776 None:intergenic
CCTAACCATGCTGCGAACCC+AGG 0.583354 2.2:-11041704 None:intergenic
ACCTGATTAAGTTGATATTG+TGG 0.584585 2.2:-11040840 None:intergenic
AGCAGCAGATATGAACACAT+TGG 0.591491 2.2:-11041759 None:intergenic
GAGTACCTGGGTTCGCAGCA+TGG 0.592297 2.2:+11041699 MS.gene35828:CDS
TGTAAGGGTAATTCGATCCA+AGG 0.592533 2.2:+11041108 MS.gene35828:CDS
AAATAATTTCAGGAGTACCT+GGG 0.593770 2.2:+11041687 MS.gene35828:intron
AAGGATAGTAAATACAGTGA+GGG 0.594157 2.2:+11041127 MS.gene35828:CDS
AGGATAGTAAATACAGTGAG+GGG 0.615694 2.2:+11041128 MS.gene35828:CDS
GGAGAGAAGGAGAGTTTCAA+CGG 0.616397 2.2:-11040763 None:intergenic
GTTTACCTTGACAATGTTGG+TGG 0.618276 2.2:+11043317 MS.gene35828:CDS
GTAGCTGCATACTGTCCTGA+AGG 0.620585 2.2:+11040660 MS.gene35828:CDS
GATGTTTACCTTGACAATGT+TGG 0.620700 2.2:+11043314 MS.gene35828:CDS
TGAGATATCATCCCACAAAG+TGG 0.634211 2.2:-11043389 None:intergenic
GGTAAACATCAATACCATCA+GGG 0.638329 2.2:-11043301 None:intergenic
GCGGAGTTTAAGATGATCCG+AGG 0.648505 2.2:-11040691 None:intergenic
CAAGGATAGTAAATACAGTG+AGG 0.660082 2.2:+11041126 MS.gene35828:CDS
TCCGCGAAGATATGGATCAA+CGG 0.662990 2.2:-11040784 None:intergenic
GGATAGTAAATACAGTGAGG+GGG 0.664890 2.2:+11041129 MS.gene35828:CDS
GAATTACGACTTGCTTAAAG+CGG 0.671434 2.2:-11042558 None:intergenic
GGTCAGCTTGCTAAGATACG+AGG 0.707694 2.2:+11041806 MS.gene35828:CDS
CAAGAGAAAGAGAAACAGTG+CGG 0.754469 2.2:-11040710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTATTTATTAGAATTA+GGG + chr2.2:11040863-11040882 MS.gene35828:intron 10.0%
!! ATATATATATATATATTTGC+AGG + chr2.2:11041066-11041085 MS.gene35828:intron 10.0%
!! TAAAATGAAATTTGTATTTA+AGG + chr2.2:11041609-11041628 MS.gene35828:intron 10.0%
!! TACATTTATTTATTAGAATT+AGG + chr2.2:11040862-11040881 MS.gene35828:intron 10.0%
!! TATTATATAAAGAAAATAAG+TGG - chr2.2:11041883-11041902 None:intergenic 10.0%
!!! AAATTTTTGAAGTATAAAAT+TGG + chr2.2:11042895-11042914 MS.gene35828:intron 10.0%
!!! AATTTTTGAAGTATAAAATT+GGG + chr2.2:11042896-11042915 MS.gene35828:intron 10.0%
!!! CTTATTTTCTTTATATAATA+TGG + chr2.2:11041883-11041902 MS.gene35828:intron 10.0%
!!! GTATTTTTTTTAATAAAAAG+TGG + chr2.2:11040970-11040989 MS.gene35828:intron 10.0%
!!! TTTTATTCAATTAGTTTAAA+AGG + chr2.2:11041356-11041375 MS.gene35828:intron 10.0%
!!! TTTTTATGTGAAATTTTATA+GGG - chr2.2:11043174-11043193 None:intergenic 10.0%
!! AAAAAAATACTCATATTTGA+TGG + chr2.2:11041564-11041583 MS.gene35828:intron 15.0%
!! TTTCTAATTATATGAAAAGA+AGG - chr2.2:11041202-11041221 None:intergenic 15.0%
!!! ATTTCTAAAAAAAAATTGGT+GGG + chr2.2:11042665-11042684 MS.gene35828:intron 15.0%
!!! ATTTTTGAAGTATAAAATTG+GGG + chr2.2:11042897-11042916 MS.gene35828:intron 15.0%
!!! CTTTTTATGTGAAATTTTAT+AGG - chr2.2:11043175-11043194 None:intergenic 15.0%
!!! TCATTTAACGTTTTTTAAAT+CGG - chr2.2:11042751-11042770 None:intergenic 15.0%
!! AAAAAGATAGCTAATACATT+TGG - chr2.2:11042153-11042172 None:intergenic 20.0%
!! AAGAATACATAAAGAGAAAA+AGG - chr2.2:11042586-11042605 None:intergenic 20.0%
!! ATTTCACTATCAAATTATCT+CGG + chr2.2:11041241-11041260 MS.gene35828:CDS 20.0%
!! CTAAAGAAATGATAAAAACT+TGG - chr2.2:11041959-11041978 None:intergenic 20.0%
!! TTACAAAACAAAATTTCATG+AGG - chr2.2:11041926-11041945 None:intergenic 20.0%
!! TTATTTATTTCGATGCTAAT+AGG - chr2.2:11042040-11042059 None:intergenic 20.0%
!! TTGATTTATAAAGTTCTTTC+CGG - chr2.2:11042723-11042742 None:intergenic 20.0%
!! TTGCAATTTATCTGTATTTA+TGG + chr2.2:11043100-11043119 MS.gene35828:intron 20.0%
!!! CACCAATTTTTTTTTAGAAA+TGG - chr2.2:11042666-11042685 None:intergenic 20.0%
!!! CATTTCTAAAAAAAAATTGG+TGG + chr2.2:11042664-11042683 MS.gene35828:intron 20.0%
!!! CTCCATTTCTAAAAAAAAAT+TGG + chr2.2:11042661-11042680 MS.gene35828:intron 20.0%
!!! TTAAGTTTTTGTTTTGTGTT+CGG + chr2.2:11042186-11042205 MS.gene35828:intron 20.0%
!!! TTTCTAAAAAAAAATTGGTG+GGG + chr2.2:11042666-11042685 MS.gene35828:intron 20.0%
!!! TTTTGTGATTAAAATAGAGA+GGG - chr2.2:11042130-11042149 None:intergenic 20.0%
! AACTATCATTCACTTCAAAA+TGG - chr2.2:11042784-11042803 None:intergenic 25.0%
! ATCCGATCGAAATATAATAT+TGG - chr2.2:11042381-11042400 None:intergenic 25.0%
! ATTTGGTAGAAAACAAAGAA+TGG + chr2.2:11040634-11040653 MS.gene35828:CDS 25.0%
! GTTGATATTGTGGAATAAAA+AGG - chr2.2:11040833-11040852 None:intergenic 25.0%
! TAAATAAGTACCTCTCATTA+TGG + chr2.2:11042053-11042072 MS.gene35828:intron 25.0%
! TATAAGAATATCCACAACAA+TGG + chr2.2:11042003-11042022 MS.gene35828:intron 25.0%
! TATTATATTTCGATCGGATT+TGG + chr2.2:11042382-11042401 MS.gene35828:intron 25.0%
! TGCCAATATTATATTTCGAT+CGG + chr2.2:11042376-11042395 MS.gene35828:intron 25.0%
! TTTGCATGGATAATTATCTT+TGG + chr2.2:11042289-11042308 MS.gene35828:intron 25.0%
!! ATACTTTTGTAGTATTAACG+TGG + chr2.2:11041516-11041535 MS.gene35828:intron 25.0%
!! GTTTTGTGATTAAAATAGAG+AGG - chr2.2:11042131-11042150 None:intergenic 25.0%
!! TACTTTTGTAGTATTAACGT+GGG + chr2.2:11041517-11041536 MS.gene35828:intron 25.0%
!! TATTTTCACTAGAATTTTGC+AGG + chr2.2:11043273-11043292 MS.gene35828:intron 25.0%
!! TTGCAATTTGTTTGCATTTA+GGG - chr2.2:11042970-11042989 None:intergenic 25.0%
!! TTTGCAATTTGTTTGCATTT+AGG - chr2.2:11042971-11042990 None:intergenic 25.0%
!!! GTTAATAAGTCGATTTTGTA+AGG - chr2.2:11040905-11040924 None:intergenic 25.0%
!!! TCGTATACATATTTTTTGCA+TGG + chr2.2:11042275-11042294 MS.gene35828:intron 25.0%
AACTATGGTCATTTACTCAA+TGG - chr2.2:11042812-11042831 None:intergenic 30.0%
AAGGATAGTAAATACAGTGA+GGG + chr2.2:11041127-11041146 MS.gene35828:CDS 30.0%
AGAAAAATTGATCCTGCTAA+TGG + chr2.2:11041217-11041236 MS.gene35828:CDS 30.0%
CATTATGGAGAGAAAACATT+TGG + chr2.2:11042068-11042087 MS.gene35828:intron 30.0%
GAAAAATTGATCCTGCTAAT+GGG + chr2.2:11041218-11041237 MS.gene35828:CDS 30.0%
TAAAAAAAAATTGGTGGGGT+GGG + chr2.2:11042670-11042689 MS.gene35828:intron 30.0%
TACAACATTTGCAGTTGTAA+GGG + chr2.2:11041093-11041112 MS.gene35828:CDS 30.0%
TCAAATTATCTCGGTTCTTT+AGG + chr2.2:11041250-11041269 MS.gene35828:CDS 30.0%
TCCACAATATCAACTTAATC+AGG + chr2.2:11040839-11040858 MS.gene35828:CDS 30.0%
TTACAACATTTGCAGTTGTA+AGG + chr2.2:11041092-11041111 MS.gene35828:CDS 30.0%
! AAGCTCATCAAAGAGAATTT+TGG + chr2.2:11042491-11042510 MS.gene35828:CDS 30.0%
! GAGAATTTTGGATATGATGA+TGG + chr2.2:11042503-11042522 MS.gene35828:CDS 30.0%
! GATATCCTTTTGAATGGATA+TGG + chr2.2:11041151-11041170 MS.gene35828:CDS 30.0%
! GTTGTTTAAGATTGCTCTTT+AGG - chr2.2:11042857-11042876 None:intergenic 30.0%
!! AAATAATTTCAGGAGTACCT+GGG + chr2.2:11041687-11041706 MS.gene35828:intron 30.0%
!! ACCTGATTAAGTTGATATTG+TGG - chr2.2:11040843-11040862 None:intergenic 30.0%
!! TAAATAATTTCAGGAGTACC+TGG + chr2.2:11041686-11041705 MS.gene35828:intron 30.0%
AAAAAAAAATTGGTGGGGTG+GGG + chr2.2:11042671-11042690 MS.gene35828:intron 35.0%
AAGAATATCCACAACAATGG+TGG + chr2.2:11042006-11042025 MS.gene35828:intron 35.0%
AATGCTAGAATACCACTTTG+TGG + chr2.2:11043377-11043396 MS.gene35828:CDS 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr2.2:11043071-11043090 MS.gene35828:intron 35.0%
AGAATATCCACAACAATGGT+GGG + chr2.2:11042007-11042026 MS.gene35828:intron 35.0%
AGACTCTGTTGATCAATTTC+AGG + chr2.2:11043006-11043025 MS.gene35828:intron 35.0%
AGGATAGTAAATACAGTGAG+GGG + chr2.2:11041128-11041147 MS.gene35828:CDS 35.0%
AGGTAAACATCAATACCATC+AGG - chr2.2:11043305-11043324 None:intergenic 35.0%
ATCAACAGAGTCTACATTCA+TGG - chr2.2:11042999-11043018 None:intergenic 35.0%
ATGCTAGAATACCACTTTGT+GGG + chr2.2:11043378-11043397 MS.gene35828:CDS 35.0%
CAAGGATAGTAAATACAGTG+AGG + chr2.2:11041126-11041145 MS.gene35828:CDS 35.0%
CAATTGCACACAAACAACTA+TGG - chr2.2:11042827-11042846 None:intergenic 35.0%
CTAAAAAAAAATTGGTGGGG+TGG + chr2.2:11042669-11042688 MS.gene35828:intron 35.0%
CTCACTGTATTTACTATCCT+TGG - chr2.2:11041128-11041147 None:intergenic 35.0%
CTTACAACTTGAAACATACC+TGG + chr2.2:11042453-11042472 MS.gene35828:intron 35.0%
GACTCTGTTGATCAATTTCA+GGG + chr2.2:11043007-11043026 MS.gene35828:intron 35.0%
GATGTTTACCTTGACAATGT+TGG + chr2.2:11043314-11043333 MS.gene35828:CDS 35.0%
GGTAAACATCAATACCATCA+GGG - chr2.2:11043304-11043323 None:intergenic 35.0%
TAGTTCATCCAAATTGACAC+CGG + chr2.2:11042701-11042720 MS.gene35828:intron 35.0%
TGGAATAAAAAGGCCTTCAA+GGG - chr2.2:11040823-11040842 None:intergenic 35.0%
TTCTAGCATTCTTGTTGACA+TGG - chr2.2:11043367-11043386 None:intergenic 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG + chr2.2:11042924-11042943 MS.gene35828:intron 35.0%
! GAATTACGACTTGCTTAAAG+CGG - chr2.2:11042561-11042580 None:intergenic 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG + chr2.2:11042923-11042942 MS.gene35828:intron 35.0%
! TGTTTTCTCTCCATAATGAG+AGG - chr2.2:11042066-11042085 None:intergenic 35.0%
! TTTTACCACCAACATTGTCA+AGG - chr2.2:11043325-11043344 None:intergenic 35.0%
AAAAAAAATTGGTGGGGTGG+GGG + chr2.2:11042672-11042691 MS.gene35828:intron 40.0%
ACTAAAGGGGTCTACATTCA+GGG + chr2.2:11043039-11043058 MS.gene35828:intron 40.0%
AGCAGCAGATATGAACACAT+TGG - chr2.2:11041762-11041781 None:intergenic 40.0%
AGGGACTAAAGTGACTAAAG+GGG + chr2.2:11043026-11043045 MS.gene35828:intron 40.0%
CAACTTGAAACATACCTGGT+TGG + chr2.2:11042457-11042476 MS.gene35828:intron 40.0%
CAAGAGAAAGAGAAACAGTG+CGG - chr2.2:11040713-11040732 None:intergenic 40.0%
CAGGGACTAAAGTGACTAAA+GGG + chr2.2:11043025-11043044 MS.gene35828:intron 40.0%
CGAGACCATATCCATTCAAA+AGG - chr2.2:11041159-11041178 None:intergenic 40.0%
GACGACTCATTTCCTATTCA+GGG + chr2.2:11043131-11043150 MS.gene35828:intron 40.0%
GACTAACAGAGTCTACATTC+AGG + chr2.2:11043070-11043089 MS.gene35828:intron 40.0%
GACTACTCATTTCCCATTCA+AGG - chr2.2:11042939-11042958 None:intergenic 40.0%
GATAGTGAAATCCCATTAGC+AGG - chr2.2:11041232-11041251 None:intergenic 40.0%
GATATGAACACATTGGATCC+TGG - chr2.2:11041755-11041774 None:intergenic 40.0%
GGATAGTAAATACAGTGAGG+GGG + chr2.2:11041129-11041148 MS.gene35828:CDS 40.0%
GTCTTCAGGGATTGAATCAT+CGG - chr2.2:11040736-11040755 None:intergenic 40.0%
GTGGAATAAAAAGGCCTTCA+AGG - chr2.2:11040824-11040843 None:intergenic 40.0%
GTTGTTTGTGTGCAATTGCT+AGG + chr2.2:11042829-11042848 MS.gene35828:intron 40.0%
GTTTACCTTGACAATGTTGG+TGG + chr2.2:11043317-11043336 MS.gene35828:CDS 40.0%
TCAGGGACTAAAGTGACTAA+AGG + chr2.2:11043024-11043043 MS.gene35828:intron 40.0%
TGACGACTCATTTCCTATTC+AGG + chr2.2:11043130-11043149 MS.gene35828:intron 40.0%
TGAGATATCATCCCACAAAG+TGG - chr2.2:11043392-11043411 None:intergenic 40.0%
TGCTAAGATACGAGGATGTA+GGG + chr2.2:11041814-11041833 MS.gene35828:CDS 40.0%
TGTAAGGGTAATTCGATCCA+AGG + chr2.2:11041108-11041127 MS.gene35828:CDS 40.0%
TTGCTAAGATACGAGGATGT+AGG + chr2.2:11041813-11041832 MS.gene35828:CDS 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG - chr2.2:11043146-11043165 None:intergenic 40.0%
! AGTTCTTTCCGGTGTCAATT+TGG - chr2.2:11042712-11042731 None:intergenic 40.0%
! AGTTTAAGATGATCCGAGGT+TGG - chr2.2:11040690-11040709 None:intergenic 40.0%
! TTTTGCAGGTATTTCCCTGA+TGG + chr2.2:11043287-11043306 MS.gene35828:intron 40.0%
!! ACATACCTGGTTGGTTTATC+AGG + chr2.2:11042466-11042485 MS.gene35828:intron 40.0%
!! TGGTTAGGAATAGAGGTACT+AGG + chr2.2:11041719-11041738 MS.gene35828:CDS 40.0%
AACACATTGGATCCTGGCTT+TGG - chr2.2:11041749-11041768 None:intergenic 45.0%
ATACGAGGATGTAGGGTCAT+TGG + chr2.2:11041821-11041840 MS.gene35828:CDS 45.0%
CTTCACCTGATAAACCAACC+AGG - chr2.2:11042474-11042493 None:intergenic 45.0%
GACTAAAGGGGTCTACATTC+AGG + chr2.2:11043038-11043057 MS.gene35828:intron 45.0%
GATATGGATCAACGGAGAGA+AGG - chr2.2:11040779-11040798 None:intergenic 45.0%
GGAGAGAAGGAGAGTTTCAA+CGG - chr2.2:11040766-11040785 None:intergenic 45.0%
GTGATTGTTCCGCGAAGATA+TGG - chr2.2:11040795-11040814 None:intergenic 45.0%
TATCTTCGCGGAACAATCAC+CGG + chr2.2:11040795-11040814 MS.gene35828:CDS 45.0%
TCCGCGAAGATATGGATCAA+CGG - chr2.2:11040787-11040806 None:intergenic 45.0%
TCCGTTGATCCATATCTTCG+CGG + chr2.2:11040783-11040802 MS.gene35828:CDS 45.0%
! ACACATTGGATCCTGGCTTT+GGG - chr2.2:11041748-11041767 None:intergenic 45.0%
! GAGGGGGATATCCTTTTGAA+TGG + chr2.2:11041145-11041164 MS.gene35828:CDS 45.0%
! GTGTTCATATCTGCTGCTTC+TGG + chr2.2:11041764-11041783 MS.gene35828:CDS 45.0%
!! AATATTAATTAAATAATTTC+AGG + chr2.2:11041677-11041696 MS.gene35828:intron 5.0%
!!! ATAATTTTTATCAATAAAAT+CGG - chr2.2:11041284-11041303 None:intergenic 5.0%
!!! TAAATTATTTGTTTTTATTT+GGG - chr2.2:11041591-11041610 None:intergenic 5.0%
!!! TAATATTTTCAAATTATTTA+CGG + chr2.2:11042410-11042429 MS.gene35828:intron 5.0%
!!! TATAAAAAAAATGAATTTTT+CGG + chr2.2:11042251-11042270 MS.gene35828:intron 5.0%
!!! TTAAATTATTTGTTTTTATT+TGG - chr2.2:11041592-11041611 None:intergenic 5.0%
!!! TTTTATTCAATTATTTTAAA+AGG + chr2.2:11041319-11041338 MS.gene35828:intron 5.0%
CAACGGCTAGATGGTCTTCA+GGG - chr2.2:11040749-11040768 None:intergenic 50.0%
CGCAGCATGGTTAGGAATAG+AGG + chr2.2:11041712-11041731 MS.gene35828:CDS 50.0%
GGAGAGTTTCAACGGCTAGA+TGG - chr2.2:11040758-11040777 None:intergenic 50.0%
GTAGCTGCATACTGTCCTGA+AGG + chr2.2:11040660-11040679 MS.gene35828:CDS 50.0%
TCAACGGCTAGATGGTCTTC+AGG - chr2.2:11040750-11040769 None:intergenic 50.0%
! AAAAAGGCCTTCAAGGGTGC+CGG - chr2.2:11040817-11040836 None:intergenic 50.0%
! GCGGAGTTTAAGATGATCCG+AGG - chr2.2:11040694-11040713 None:intergenic 50.0%
! TGAAGCACCCACCATTGTTG+TGG - chr2.2:11042017-11042036 None:intergenic 50.0%
!! GGTCAGCTTGCTAAGATACG+AGG + chr2.2:11041806-11041825 MS.gene35828:CDS 50.0%
!! GGTGCTGTTGGTATGAATGC+TGG + chr2.2:11041785-11041804 MS.gene35828:CDS 50.0%
!! TCCTGAAGGTGTTCCAACCT+CGG + chr2.2:11040674-11040693 MS.gene35828:CDS 50.0%
AAAAATTGGTGGGGTGGGGG+TGG + chr2.2:11042675-11042694 MS.gene35828:intron 55.0%
AAAATTGGTGGGGTGGGGGT+GGG + chr2.2:11042676-11042695 MS.gene35828:intron 55.0%
ACAATCACCGGCACCCTTGA+AGG + chr2.2:11040807-11040826 MS.gene35828:CDS 55.0%
GTACTAGGAGACCCAAAGCC+AGG + chr2.2:11041734-11041753 MS.gene35828:CDS 55.0%
TCCGAGGTTGGAACACCTTC+AGG - chr2.2:11040678-11040697 None:intergenic 55.0%
TGTAGGGTCATTGGCAGCAC+TGG + chr2.2:11041830-11041849 MS.gene35828:CDS 55.0%
!! CAGCACTGGCTCTGATGAGA+AGG + chr2.2:11041844-11041863 MS.gene35828:CDS 55.0%
!! TCTGCTGCTTCTGGTGCTGT+TGG + chr2.2:11041773-11041792 MS.gene35828:CDS 55.0%
AAATTGGTGGGGTGGGGGTG+GGG + chr2.2:11042677-11042696 MS.gene35828:intron 60.0%
CCTAACCATGCTGCGAACCC+AGG - chr2.2:11041707-11041726 None:intergenic 60.0%
CCTGGGTTCGCAGCATGGTT+AGG + chr2.2:11041704-11041723 MS.gene35828:CDS 60.0%
GAGTACCTGGGTTCGCAGCA+TGG + chr2.2:11041699-11041718 MS.gene35828:CDS 60.0%
AATTGGTGGGGTGGGGGTGG+GGG + chr2.2:11042678-11042697 MS.gene35828:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11040627 11043421 11040627 ID=MS.gene35828
chr2.2 mRNA 11040627 11043421 11040627 ID=MS.gene35828.t1;Parent=MS.gene35828
chr2.2 exon 11040627 11040860 11040627 ID=MS.gene35828.t1.exon1;Parent=MS.gene35828.t1
chr2.2 CDS 11040627 11040860 11040627 ID=cds.MS.gene35828.t1;Parent=MS.gene35828.t1
chr2.2 exon 11041088 11041271 11041088 ID=MS.gene35828.t1.exon2;Parent=MS.gene35828.t1
chr2.2 CDS 11041088 11041271 11041088 ID=cds.MS.gene35828.t1;Parent=MS.gene35828.t1
chr2.2 exon 11041699 11041865 11041699 ID=MS.gene35828.t1.exon3;Parent=MS.gene35828.t1
chr2.2 CDS 11041699 11041865 11041699 ID=cds.MS.gene35828.t1;Parent=MS.gene35828.t1
chr2.2 exon 11042488 11042570 11042488 ID=MS.gene35828.t1.exon4;Parent=MS.gene35828.t1
chr2.2 CDS 11042488 11042570 11042488 ID=cds.MS.gene35828.t1;Parent=MS.gene35828.t1
chr2.2 exon 11043295 11043421 11043295 ID=MS.gene35828.t1.exon5;Parent=MS.gene35828.t1
chr2.2 CDS 11043295 11043421 11043295 ID=cds.MS.gene35828.t1;Parent=MS.gene35828.t1
Gene Sequence

>MS.gene35828

ATGGGAGATTTGGTAGAAAACAAAGAATGGTACGTAGCTGCATACTGTCCTGAAGGTGTTCCAACCTCGGATCATCTTAAACTCCGCACTGTTTCTCTTTCTCTTGCCGATGATTCAATCCCTGAAGACCATCTAGCCGTTGAAACTCTCCTTCTCTCCGTTGATCCATATCTTCGCGGAACAATCACCGGCACCCTTGAAGGCCTTTTTATTCCACAATATCAACTTAATCAGGTACATTTATTTATTAGAATTAGGGTTGAGTCTCATTAAAGCCTTACAAAATCGACTTATTAACTTACGTCAAATGTTATATTTTCTAATGTGATACTTTTAACTTCTAGTATTTTTTTTAATAAAAAGTGGTACATTATTTATAACTATCTTTGTTACTTTGTATATGCATGCATATTATTGTTTAATTCGTTGAATAATGTGAATATATATATATATATTTGCAGGTGATTACAACATTTGCAGTTGTAAGGGTAATTCGATCCAAGGATAGTAAATACAGTGAGGGGGATATCCTTTTGAATGGATATGGTCTCGTTGCTGAGTATAGCATTGTACCTTCTTTTCATATAATTAGAAAAATTGATCCTGCTAATGGGATTTCACTATCAAATTATCTCGGTTCTTTAGGTTCGTTTTCCGATTTTATTGATAAAAATTATAAGTATAGTTGTAAATTTTATTCAATTATTTTAAAAGGTTTAACTTGTAAATTTTTATTCAATTAGTTTAAAAGGTTTAACTAAAGTATAAAAAATTATAAGAAAAAATGTCACACTAAATTTAAGTATCATTTTTCTTTAAAACTATATATATTTTTTTGAAGAAATCTATAAAACTATATCTGTGTGTGTTTTATTATCTTTTAAGATATATACTTTTGTAGTATTAACGTGGGTCTAAAATATGAAAAAAAATAATAAAAAAAATACTCATATTTGATGGTCCCAAATAAAAACAAATAATTTAAAATGAAATTTGTATTTAAGGACAATTTATTTTTTCAAAAAATTGTTTATAATTAGATAATAAAAAAATATTAATTAAATAATTTCAGGAGTACCTGGGTTCGCAGCATGGTTAGGAATAGAGGTACTAGGAGACCCAAAGCCAGGATCCAATGTGTTCATATCTGCTGCTTCTGGTGCTGTTGGTATGAATGCTGGTCAGCTTGCTAAGATACGAGGATGTAGGGTCATTGGCAGCACTGGCTCTGATGAGAAGGTAACATAACAGTTCCACTTATTTTCTTTATATAATATGGAAAATTTTGACTTTAATCCTCATGAAATTTTGTTTTGTAATATAGCAGTTCCAAGTTTTTATCATTTCTTTAGAACATAAAATACATATATATTGAATATAAGAATATCCACAACAATGGTGGGTGCTTCACCTATTAGCATCGAAATAAATAAGTACCTCTCATTATGGAGAGAAAACATTTGGTGTTTATAGAAAAGAGTGACTATGTAAGCACTTTTTCCCTCTCTATTTTAATCACAAAACCAAATGTATTAGCTATCTTTTTTAATCACTTTTTATTAAGTTTTTGTTTTGTGTTCGGCTACATGCACATGTTAAGATTTCTATAGTTGATATAATTTTGTATAAAAAAAATGAATTTTTCGGTTCGTATACATATTTTTTGCATGGATAATTATCTTTGGACTAAAGAAAATGTGAATAAATGAAGACAGTAAACTCATGCACAATAGATAGATATAAACATTTTGCCAATATTATATTTCGATCGGATTTGGATTTTTAATATTTTCAAATTATTTACGGCTAATTTTTTTGACATGTTACTTACAACTTGAAACATACCTGGTTGGTTTATCAGGTGAAGCTCATCAAAGAGAATTTTGGATATGATGATGGATTCAACTACAATATAGAATCAGAATTTGATGCCGCTTTAAGCAAGTCGTAATTCGTCCTTTTTCTCTTTATGTATTCTTTTTTTTTTTTTTTACATTGTTATATAATGTTAGAGTCAACACAGAGCAAGAAATTCTCCATTTCTAAAAAAAAATTGGTGGGGTGGGGGTGGGGGTAGTTCATCCAAATTGACACCGGAAAGAACTTTATAAATCAATTACACCGATTTAAAAAACGTTAAATGACAATTAACGACCATTTTGAAGTGAATGATAGTTAATTGCCATTGAGTAAATGACCATAGTTGTTTGTGTGCAATTGCTAGGTGCCTAAAGAGCAATCTTAAACAACTTGTCAGTTGTCACAAGCAAATTTTTGAAGTATAAAATTGGGGAATTAGTCACTTTAGTCCTTGAATGGGAAATGAGTAGTCAATTTAGTCCCTAAATGCAAACAAATTGCAAAACAGTCCATGAATGTAGACTCTGTTGATCAATTTCAGGGACTAAAGTGACTAAAGGGGTCTACATTCAGGGACTAAATTGACTAACAGAGTCTACATTCAGGGACTATTTTGCAATTTATCTGTATTTATGGACTAAAGTGACGACTCATTTCCTATTCAGGGACTAAAGTGACTAATCTCCCTATAAAATTTCACATAAAAAGACTTATGACAAAAATGTACATACTCAAAAGTTAGACTAATATATATTTTAGTTTTTCAAAATTAAGTTAATACTCTGATATTTTCACTAGAATTTTGCAGGTATTTCCCTGATGGTATTGATGTTTACCTTGACAATGTTGGTGGTAAAATGCTCGAATCTGTACTTAACCATGTCAACAAGAATGCTAGAATACCACTTTGTGGGATGATATCTCAATATAATAAG
Protein sequence

>MS.gene35828.t1

MGDLVENKEWYVAAYCPEGVPTSDHLKLRTVSLSLADDSIPEDHLAVETLLLSVDPYLRGTITGTLEGLFIPQYQLNQVITTFAVVRVIRSKDSKYSEGDILLNGYGLVAEYSIVPSFHIIRKIDPANGISLSNYLGSLGVPGFAAWLGIEVLGDPKPGSNVFISAASGAVGMNAGQLAKIRGCRVIGSTGSDEKVKLIKENFGYDDGFNYNIESEFDAALSKYFPDGIDVYLDNVGGKMLESVLNHVNKNARIPLCGMISQYNK