Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36098.t1 | RHN40604.1 | 91.6 | 824 | 67 | 2 | 1 | 824 | 1 | 822 | 0.00E+00 | 1425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36098.t1 | F4JYG0 | 46.3 | 451 | 223 | 6 | 14 | 457 | 11 | 449 | 5.6e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36098.t1 | A0A396GM09 | 91.6 | 824 | 67 | 2 | 1 | 824 | 1 | 822 | 0.0e+00 | 1425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene36098 | -0.863783 | 1.95E-64 | -1.69E-46 |
| MS.gene050752 | MS.gene36098 | -0.857844 | 1.24E-62 | -1.69E-46 |
| MS.gene050955 | MS.gene36098 | -0.860976 | 1.42E-63 | -1.69E-46 |
| MS.gene051033 | MS.gene36098 | 0.834575 | 2.77E-56 | -1.69E-46 |
| MS.gene051746 | MS.gene36098 | -0.804055 | 2.60E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene36098 | -0.814254 | 1.69E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene36098 | -0.856029 | 4.24E-62 | -1.69E-46 |
| MS.gene052818 | MS.gene36098 | 0.845752 | 3.34E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene36098 | -0.821151 | 4.70E-53 | -1.69E-46 |
| MS.gene05344 | MS.gene36098 | 0.818886 | 1.55E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene36098 | -0.86133 | 1.11E-63 | -1.69E-46 |
| MS.gene05469 | MS.gene36098 | -0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene056830 | MS.gene36098 | 0.801866 | 7.36E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene36098 | -0.83579 | 1.37E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene36098 | -0.803753 | 3.00E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene36098 | 0.854111 | 1.53E-61 | -1.69E-46 |
| MS.gene06011 | MS.gene36098 | -0.816556 | 5.20E-52 | -1.69E-46 |
| MS.gene06118 | MS.gene36098 | -0.865316 | 6.45E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36098.t1 | MTR_5g009920 | 80.723 | 830 | 143 | 8 | 1 | 824 | 1 | 819 | 0.0 | 1348 |
| MS.gene36098.t1 | MTR_8g447390 | 96.380 | 221 | 8 | 0 | 1 | 221 | 1 | 221 | 9.62e-154 | 448 |
| MS.gene36098.t1 | MTR_7g063200 | 55.844 | 385 | 128 | 12 | 27 | 401 | 19 | 371 | 1.86e-128 | 389 |
| MS.gene36098.t1 | MTR_3g107340 | 40.426 | 141 | 40 | 4 | 27 | 164 | 45 | 144 | 3.04e-20 | 88.2 |
| MS.gene36098.t1 | MTR_4g060510 | 33.028 | 109 | 68 | 2 | 299 | 402 | 351 | 459 | 1.10e-13 | 75.5 |
| MS.gene36098.t1 | MTR_4g060510 | 33.028 | 109 | 68 | 2 | 299 | 402 | 351 | 459 | 1.10e-13 | 75.5 |
| MS.gene36098.t1 | MTR_4g060510 | 33.028 | 109 | 68 | 2 | 299 | 402 | 351 | 459 | 1.20e-13 | 75.5 |
| MS.gene36098.t1 | MTR_2g093730 | 26.316 | 114 | 81 | 1 | 299 | 409 | 348 | 461 | 4.38e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36098.t1 | AT5G41580 | 47.045 | 440 | 214 | 6 | 25 | 457 | 22 | 449 | 5.42e-133 | 414 |
| MS.gene36098.t1 | AT1G08910 | 45.055 | 364 | 178 | 7 | 53 | 413 | 19 | 363 | 2.17e-88 | 298 |
| MS.gene36098.t1 | AT5G60410 | 25.735 | 136 | 92 | 2 | 299 | 431 | 347 | 476 | 8.01e-11 | 66.2 |
| MS.gene36098.t1 | AT5G60410 | 25.735 | 136 | 92 | 2 | 299 | 431 | 347 | 476 | 9.05e-11 | 66.2 |
| MS.gene36098.t1 | AT5G60410 | 25.735 | 136 | 92 | 2 | 299 | 431 | 347 | 476 | 9.05e-11 | 66.2 |
| MS.gene36098.t1 | AT5G60410 | 25.735 | 136 | 92 | 2 | 299 | 431 | 347 | 476 | 9.07e-11 | 66.2 |
| MS.gene36098.t1 | AT5G60410 | 25.735 | 136 | 92 | 2 | 299 | 431 | 347 | 476 | 9.07e-11 | 66.2 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAATTCAGTAACTAATT+TGG | 0.125289 | 8.3:-52710503 | MS.gene36098:CDS |
| GTGACTAGTATCCTTAAATT+TGG | 0.151707 | 8.3:-52713612 | MS.gene36098:CDS |
| GAAGATTTGTCCCAAATTTA+AGG | 0.163350 | 8.3:+52713601 | None:intergenic |
| GTTCTATCCCAATATGAAAT+TGG | 0.190122 | 8.3:-52717503 | MS.gene36098:CDS |
| CAGGACTCCTTCAGCTATTC+AGG | 0.218379 | 8.3:-52710560 | MS.gene36098:CDS |
| GGTTGTGGACCTTGTGATCT+TGG | 0.236062 | 8.3:+52709172 | None:intergenic |
| ATCAAATAGAAGACAACTTT+TGG | 0.239208 | 8.3:-52710825 | MS.gene36098:CDS |
| TGATAATGATTTGGACATAA+TGG | 0.241106 | 8.3:-52710902 | MS.gene36098:CDS |
| GTTCTTCTGCATCTTCCTTC+TGG | 0.254738 | 8.3:+52717956 | None:intergenic |
| CGTATCAAGACTCCTGTTAA+AGG | 0.263268 | 8.3:-52712286 | MS.gene36098:CDS |
| GTTGCATTGGCTGGCGTGCC+CGG | 0.275764 | 8.3:+52709634 | None:intergenic |
| TCCTGCAGTGTTAACTATAA+TGG | 0.285566 | 8.3:-52717764 | MS.gene36098:CDS |
| TACCCGACCCAATTTCATAT+TGG | 0.286659 | 8.3:+52717495 | None:intergenic |
| AATTCACTTGTAAACGAGTA+TGG | 0.286750 | 8.3:-52710613 | MS.gene36098:CDS |
| CTGGCGGCACTCGGTTAGTT+GGG | 0.302157 | 8.3:+52709772 | None:intergenic |
| ACCCGACCCAATTTCATATT+GGG | 0.305824 | 8.3:+52717496 | None:intergenic |
| GCCTGCAGTTTCTGTTGATT+CGG | 0.307512 | 8.3:-52713384 | MS.gene36098:CDS |
| CACCTGTGCAGGCAGTTTCT+AGG | 0.310943 | 8.3:-52709333 | MS.gene36098:CDS |
| GTTGGTGAGGTCCACAATAT+TGG | 0.311216 | 8.3:+52710927 | None:intergenic |
| CCTGCATTGCAGCCTGGATA+TGG | 0.316259 | 8.3:-52717372 | MS.gene36098:intron |
| AATTACTCTGTGCTGATAAC+TGG | 0.324281 | 8.3:+52710656 | None:intergenic |
| TTGCATGAACGTCCTTTAAC+AGG | 0.336263 | 8.3:+52712274 | None:intergenic |
| GTCCAAATCATTATCATTGT+TGG | 0.341893 | 8.3:+52710909 | None:intergenic |
| TGGTGTCGACCTTCCTGTTC+TGG | 0.347202 | 8.3:-52710758 | MS.gene36098:CDS |
| ACTGCAGGATGGCAAGAATT+AGG | 0.348926 | 8.3:+52717778 | None:intergenic |
| CATTTGATGGTTGCATTGGC+TGG | 0.349918 | 8.3:+52709625 | None:intergenic |
| CACCAAAGTTCTTGACCGTT+TGG | 0.352136 | 8.3:-52719944 | MS.gene36098:CDS |
| CATCCAATTGAGATGTTGTT+AGG | 0.354862 | 8.3:+52709146 | None:intergenic |
| CCGTCGCAGTTACCAGATTC+AGG | 0.359888 | 8.3:-52720024 | MS.gene36098:CDS |
| CACCAACAATGATAATGATT+TGG | 0.360028 | 8.3:-52710911 | MS.gene36098:CDS |
| TCTCACTTAAATGTCCAATA+AGG | 0.360192 | 8.3:-52713003 | MS.gene36098:intron |
| TTGCATTGGCTGGCGTGCCC+GGG | 0.361778 | 8.3:+52709635 | None:intergenic |
| AAGGTTAAATCATACCTTAT+TGG | 0.363072 | 8.3:+52712989 | None:intergenic |
| CTTTGAACTTCTTGTGATGA+TGG | 0.363151 | 8.3:+52709196 | None:intergenic |
| CCTGCAGTTTCTGTTGATTC+GGG | 0.365692 | 8.3:-52713383 | MS.gene36098:intron |
| TTTGTTGTTGCACCTGAATC+TGG | 0.370037 | 8.3:+52720012 | None:intergenic |
| ATCACCTGTTTCATCAAAAT+AGG | 0.381372 | 8.3:+52718661 | None:intergenic |
| AGCTTGAGAATTACCTTGTC+TGG | 0.387128 | 8.3:+52709509 | None:intergenic |
| TGAGACCGTTGAGCATTTGA+TGG | 0.387262 | 8.3:+52709612 | None:intergenic |
| GACGGCGATACTACTGGGTT+TGG | 0.389905 | 8.3:+52719988 | None:intergenic |
| ACAATATTGGAAACGGCATC+AGG | 0.390838 | 8.3:+52710940 | None:intergenic |
| TGACTAGTATCCTTAAATTT+GGG | 0.392654 | 8.3:-52713611 | MS.gene36098:CDS |
| ATTCGCAACCAGATCAGAAT+TGG | 0.396747 | 8.3:-52709294 | MS.gene36098:CDS |
| AAGCCATAACCCTGGCTTGT+TGG | 0.405820 | 8.3:+52709544 | None:intergenic |
| GATAATGATTTGGACATAAT+GGG | 0.406146 | 8.3:-52710901 | MS.gene36098:CDS |
| GTTATGCATGACAGAATTCA+TGG | 0.407123 | 8.3:+52710678 | None:intergenic |
| TTTGCGATTGACTTGGTTCT+CGG | 0.414617 | 8.3:+52709724 | None:intergenic |
| ACTGGCGGCACTCGGTTAGT+TGG | 0.415855 | 8.3:+52709771 | None:intergenic |
| TTCTATCCCAATATGAAATT+GGG | 0.418225 | 8.3:-52717502 | MS.gene36098:CDS |
| ACTAGCGACGGCGATACTAC+TGG | 0.420758 | 8.3:+52719982 | None:intergenic |
| ACGGCGATACTACTGGGTTT+GGG | 0.426614 | 8.3:+52719989 | None:intergenic |
| AGGCCTAACAACATCTCAAT+TGG | 0.427523 | 8.3:-52709149 | MS.gene36098:CDS |
| TCTTTCTGCATCACTCAGTA+TGG | 0.428724 | 8.3:+52710402 | None:intergenic |
| TTTCAGGCTTCTGTTCCTAC+TGG | 0.429416 | 8.3:-52710850 | MS.gene36098:CDS |
| CAACGATGCAACACTCATAT+AGG | 0.429975 | 8.3:+52713442 | None:intergenic |
| TATATTGCCAACAGTGGATC+TGG | 0.433945 | 8.3:-52710793 | MS.gene36098:CDS |
| GAAACGGCCTCAGCCAGAAC+AGG | 0.438010 | 8.3:+52710745 | None:intergenic |
| CATGGATAAGATACAGAATA+AGG | 0.440822 | 8.3:-52711013 | MS.gene36098:CDS |
| GCAGGTGTGAATTTGTGTAT+TGG | 0.441233 | 8.3:+52709673 | None:intergenic |
| AATAATTAAATTACCTGGAG+AGG | 0.442090 | 8.3:+52719860 | None:intergenic |
| TGCAGCAAACTCTGAATCCC+CGG | 0.443281 | 8.3:-52709653 | MS.gene36098:CDS |
| ACTGCAGGCTGAACATAATC+TGG | 0.444549 | 8.3:+52713398 | None:intergenic |
| TCAACTTCTTGATTAAATAC+AGG | 0.447416 | 8.3:+52710721 | None:intergenic |
| TAGCCAACAAGCCAGGGTTA+TGG | 0.450308 | 8.3:-52709547 | MS.gene36098:CDS |
| TAAATTCCAAGAGGCCATCT+TGG | 0.451321 | 8.3:-52711664 | MS.gene36098:CDS |
| CTGGTGGGCATCTGTGGTCC+AGG | 0.454050 | 8.3:+52713636 | None:intergenic |
| TTATAGAATGCATGTACAAA+TGG | 0.455940 | 8.3:-52717985 | MS.gene36098:intron |
| CAGCAAATAGCCAACAAGCC+AGG | 0.455969 | 8.3:-52709554 | MS.gene36098:CDS |
| GTTGCAGCTGAAGTATTAAC+TGG | 0.457093 | 8.3:+52709753 | None:intergenic |
| GCAGCGCCAAGATGGCCTCT+TGG | 0.458044 | 8.3:+52711658 | None:intergenic |
| GTTCGGCAATTGCATTTCCC+AGG | 0.460989 | 8.3:+52717800 | None:intergenic |
| ACCTATGTCTCTCCCTCTCC+AGG | 0.462112 | 8.3:-52719873 | MS.gene36098:intron |
| GCAAAGAGGACCACCTGTGC+AGG | 0.463016 | 8.3:-52709344 | MS.gene36098:CDS |
| TAAGGTCCACGATTGTGAAA+TGG | 0.468639 | 8.3:-52710995 | MS.gene36098:CDS |
| GGATCTGCAGAGGCAGGGTT+GGG | 0.469139 | 8.3:+52710433 | None:intergenic |
| ATAGATTCTGATATTATTGA+GGG | 0.469704 | 8.3:-52713037 | MS.gene36098:intron |
| TTGTAAGGATCTGCAGAGGC+AGG | 0.472072 | 8.3:+52710427 | None:intergenic |
| TCCATTATAGTTAACACTGC+AGG | 0.473060 | 8.3:+52717763 | None:intergenic |
| GAAAGAGTCTGTTGGAGTGC+CGG | 0.473607 | 8.3:+52719906 | None:intergenic |
| GCAGACATGATGATTGCAAT+GGG | 0.474228 | 8.3:+52711634 | None:intergenic |
| TTGATTAAATACAGGAGAAA+CGG | 0.476180 | 8.3:+52710729 | None:intergenic |
| TATAGATTCTGATATTATTG+AGG | 0.480285 | 8.3:-52713038 | MS.gene36098:intron |
| AAAGAGTCTGTTGGAGTGCC+GGG | 0.482070 | 8.3:+52719907 | None:intergenic |
| GGTGGGAGCGCTGGATCCGC+AGG | 0.483132 | 8.3:+52713419 | None:intergenic |
| GTGGGACGCCAATTCTGATC+TGG | 0.490794 | 8.3:+52709286 | None:intergenic |
| CGACCTTCCTGTTCTGGCTG+AGG | 0.492057 | 8.3:-52710752 | MS.gene36098:CDS |
| GTGCTTCTAATGTCTGAGAT+TGG | 0.492421 | 8.3:+52710527 | None:intergenic |
| ACATAATCTGGTGGGAGCGC+TGG | 0.493698 | 8.3:+52713410 | None:intergenic |
| ACCTGTGTTGCTGTAGAGAC+TGG | 0.494454 | 8.3:+52710343 | None:intergenic |
| CGAATGCGTGGAAGTCTGTC+AGG | 0.494833 | 8.3:-52709259 | MS.gene36098:CDS |
| GAATACTTGTTCTGTATGAT+CGG | 0.496312 | 8.3:+52709700 | None:intergenic |
| TCACTCAGTATGGCATTGTA+AGG | 0.498647 | 8.3:+52710412 | None:intergenic |
| CTAGCGACGGCGATACTACT+GGG | 0.498932 | 8.3:+52719983 | None:intergenic |
| GGGGATTCAGAGTTTGCTGC+AGG | 0.501350 | 8.3:+52709655 | None:intergenic |
| AGACGGACTGCTGGTTATCA+AGG | 0.501576 | 8.3:+52710477 | None:intergenic |
| ACAGCAGAAGCTCCATATCC+AGG | 0.501901 | 8.3:+52717360 | None:intergenic |
| GAAACAGACCATTCGAAAGT+TGG | 0.502758 | 8.3:+52713753 | None:intergenic |
| TCCCAATATGAAATTGGGTC+GGG | 0.504227 | 8.3:-52717497 | MS.gene36098:CDS |
| ACAAAGATCCTGGATAAAGT+TGG | 0.505299 | 8.3:-52711105 | MS.gene36098:intron |
| CAAGCTGTGGGTCAGTTCAA+TGG | 0.507787 | 8.3:-52713576 | MS.gene36098:intron |
| GTCACACTGGTGGGCATCTG+TGG | 0.509385 | 8.3:+52713630 | None:intergenic |
| GCTGATAGATCGTGGAAGGC+AGG | 0.511744 | 8.3:-52711054 | MS.gene36098:CDS |
| TGATGCCGTTTCCAATATTG+TGG | 0.511813 | 8.3:-52710938 | MS.gene36098:CDS |
| AGCAGCTTACTGATGATGTT+AGG | 0.513878 | 8.3:-52709234 | MS.gene36098:CDS |
| TGTTCTCACCAACTTTATCC+AGG | 0.514512 | 8.3:+52711097 | None:intergenic |
| GTAGAAAATGTGTGGCCAAA+CGG | 0.518933 | 8.3:+52719929 | None:intergenic |
| GACAAATCTTCTTCAAGCTG+TGG | 0.520325 | 8.3:-52713589 | MS.gene36098:CDS |
| GGATCTGGTACCCCTACAGC+TGG | 0.520398 | 8.3:-52710778 | MS.gene36098:CDS |
| AGGATCTGCAGAGGCAGGGT+TGG | 0.522672 | 8.3:+52710432 | None:intergenic |
| GAAGGTCGACACCAGCTGTA+GGG | 0.523138 | 8.3:+52710767 | None:intergenic |
| GTAGGAACAGAAGCCTGAAA+AGG | 0.525366 | 8.3:+52710853 | None:intergenic |
| TGAGCATTTGATGGTTGCAT+TGG | 0.526970 | 8.3:+52709621 | None:intergenic |
| GTCCTAGAAACTGCCTGCAC+AGG | 0.527193 | 8.3:+52709331 | None:intergenic |
| TGTATTTAATCAAGAAGTTG+AGG | 0.530392 | 8.3:-52710719 | MS.gene36098:CDS |
| AATTGAGATGTTGTTAGGCC+TGG | 0.536301 | 8.3:+52709151 | None:intergenic |
| GAGGTCCACAATATTGGAAA+CGG | 0.536446 | 8.3:+52710933 | None:intergenic |
| GGCCAAACGGTCAAGAACTT+TGG | 0.540358 | 8.3:+52719942 | None:intergenic |
| TTTCTGCGGAATTTCACCAT+TGG | 0.541245 | 8.3:+52718696 | None:intergenic |
| GTATTTAATCAAGAAGTTGA+GGG | 0.546340 | 8.3:-52710718 | MS.gene36098:CDS |
| ACATATTAACTGTTGGCACT+CGG | 0.546475 | 8.3:+52709799 | None:intergenic |
| TGCATTGGCTGGCGTGCCCG+GGG | 0.547713 | 8.3:+52709636 | None:intergenic |
| AAGTATTAACTGGCGGCACT+CGG | 0.549196 | 8.3:+52709763 | None:intergenic |
| TTCGGCAATTGCATTTCCCA+GGG | 0.549284 | 8.3:+52717801 | None:intergenic |
| ACCTGGAGAGGGAGAGACAT+AGG | 0.551338 | 8.3:+52719872 | None:intergenic |
| AGGCGTAGCAGACGGACTGC+TGG | 0.552528 | 8.3:+52710468 | None:intergenic |
| ACAAATCTTCTTCAAGCTGT+GGG | 0.552823 | 8.3:-52713588 | MS.gene36098:CDS |
| AATCATTATCATTGTTGGTG+AGG | 0.556311 | 8.3:+52710914 | None:intergenic |
| GGAAAGATTTACTGCACCCT+GGG | 0.556748 | 8.3:-52717817 | MS.gene36098:CDS |
| TCTAATGTCTGAGATTGGAC+TGG | 0.557199 | 8.3:+52710532 | None:intergenic |
| CGACATCGAGGCATATTCAC+AGG | 0.557218 | 8.3:-52710579 | MS.gene36098:CDS |
| AACGGTCTCACATCCAGCAA+GGG | 0.558256 | 8.3:-52709599 | MS.gene36098:CDS |
| AGCAAATAGCCAACAAGCCA+GGG | 0.558547 | 8.3:-52709553 | MS.gene36098:CDS |
| ATTCACTTGTAAACGAGTAT+GGG | 0.558857 | 8.3:-52710612 | MS.gene36098:CDS |
| GATGTTGTTAGGCCTGGTTG+TGG | 0.561256 | 8.3:+52709157 | None:intergenic |
| GCAGCAAACTCTGAATCCCC+GGG | 0.561266 | 8.3:-52709652 | MS.gene36098:CDS |
| ATCCCAATATGAAATTGGGT+CGG | 0.561778 | 8.3:-52717498 | MS.gene36098:CDS |
| AAATCATACTTCACTTGCTG+AGG | 0.563849 | 8.3:+52713894 | None:intergenic |
| CGTCCCACTTCGCGAATGCG+TGG | 0.565850 | 8.3:-52709271 | MS.gene36098:CDS |
| AAGAAATCGAAAGAGTCTGT+TGG | 0.565882 | 8.3:+52719898 | None:intergenic |
| TCTGTTCCATTTCACAATCG+TGG | 0.571255 | 8.3:+52710989 | None:intergenic |
| CTAGAAACTGCCTGCACAGG+TGG | 0.572863 | 8.3:+52709334 | None:intergenic |
| ATAATTAAATTACCTGGAGA+GGG | 0.573103 | 8.3:+52719861 | None:intergenic |
| ATGTCTGAGATTGGACTGGA+AGG | 0.574429 | 8.3:+52710536 | None:intergenic |
| CGACGGAGTGTTGGTTGACA+TGG | 0.579835 | 8.3:+52720041 | None:intergenic |
| TCTTGATAGAAACATGATTG+AGG | 0.580437 | 8.3:-52711597 | MS.gene36098:intron |
| ACTTCCACGCATTCGCGAAG+TGG | 0.580537 | 8.3:+52709267 | None:intergenic |
| TCCAGTCTCTACAGCAACAC+AGG | 0.581605 | 8.3:-52710344 | MS.gene36098:intron |
| GCTATCAGTAGCAGCTGTGA+TGG | 0.581813 | 8.3:-52718442 | MS.gene36098:CDS |
| CAATATTGGAAACGGCATCA+GGG | 0.582055 | 8.3:+52710941 | None:intergenic |
| TGGCGGCACTCGGTTAGTTG+GGG | 0.582576 | 8.3:+52709773 | None:intergenic |
| CAACGGTCTCACATCCAGCA+AGG | 0.583773 | 8.3:-52709600 | MS.gene36098:CDS |
| AGAAGCTGATAGATCGTGGA+AGG | 0.584311 | 8.3:-52711058 | MS.gene36098:CDS |
| GGGGCTGACATATTAACTGT+TGG | 0.585221 | 8.3:+52709792 | None:intergenic |
| AGCAGACATGATGATTGCAA+TGG | 0.586914 | 8.3:+52711633 | None:intergenic |
| TAACTTGCAGTATTTACTGG+TGG | 0.589424 | 8.3:-52713958 | MS.gene36098:intron |
| GGTAGTTCATTCGCTTTCTG+CGG | 0.591355 | 8.3:+52718682 | None:intergenic |
| AGGATGGCAAGAATTAGGTT+CGG | 0.592268 | 8.3:+52717783 | None:intergenic |
| AGGAAAGATTTACTGCACCC+TGG | 0.592779 | 8.3:-52717818 | MS.gene36098:CDS |
| AGATCACAAGGTCCACAACC+AGG | 0.595290 | 8.3:-52709169 | MS.gene36098:CDS |
| TCATCACATGTTGCCAGACA+AGG | 0.595732 | 8.3:-52709522 | MS.gene36098:intron |
| ATTGATTATGCACTTGCCAA+TGG | 0.597265 | 8.3:-52718712 | MS.gene36098:CDS |
| AGACATGATGATTGCAATGG+GGG | 0.598590 | 8.3:+52711636 | None:intergenic |
| GAACATTATTCTTTGTGATG+TGG | 0.598639 | 8.3:+52717331 | None:intergenic |
| AGAATGCATGTACAAATGGA+TGG | 0.599029 | 8.3:-52717981 | MS.gene36098:CDS |
| CCCGAATCAACAGAAACTGC+AGG | 0.603849 | 8.3:+52713383 | None:intergenic |
| GTGAATATGCCTCGATGTCG+AGG | 0.604008 | 8.3:+52710582 | None:intergenic |
| CTTCCACGCATTCGCGAAGT+GGG | 0.604391 | 8.3:+52709268 | None:intergenic |
| GGAAGGTCGACACCAGCTGT+AGG | 0.604436 | 8.3:+52710766 | None:intergenic |
| TAGATCGTGGAAGGCAGGAT+CGG | 0.605766 | 8.3:-52711049 | MS.gene36098:CDS |
| GCAGGCTGAACATAATCTGG+TGG | 0.606137 | 8.3:+52713401 | None:intergenic |
| CAGGAGTCTTGATACGTGTA+CGG | 0.607113 | 8.3:+52712293 | None:intergenic |
| AATATTGGAAACGGCATCAG+GGG | 0.610562 | 8.3:+52710942 | None:intergenic |
| TACAAGGACCAACTTTCGAA+TGG | 0.611482 | 8.3:-52713761 | MS.gene36098:intron |
| TCTTCTATTTGATCGCCAGT+AGG | 0.614783 | 8.3:+52710835 | None:intergenic |
| AATTGTGTCAATCGAAGCCA+AGG | 0.615190 | 8.3:-52717473 | MS.gene36098:intron |
| CAGTGTTAACTATAATGGAA+AGG | 0.615362 | 8.3:-52717759 | MS.gene36098:intron |
| GGAAGGGCCTGAATAGCTGA+AGG | 0.617388 | 8.3:+52710553 | None:intergenic |
| AGATTCTGATATTATTGAGG+GGG | 0.617407 | 8.3:-52713035 | MS.gene36098:CDS |
| AGGATACTAGTCACACTGGT+GGG | 0.619662 | 8.3:+52713621 | None:intergenic |
| CCTGAATCTGGTAACTGCGA+CGG | 0.627381 | 8.3:+52720024 | None:intergenic |
| CAGGCTGAACATAATCTGGT+GGG | 0.629910 | 8.3:+52713402 | None:intergenic |
| ACGGTCTCACATCCAGCAAG+GGG | 0.631421 | 8.3:-52709598 | MS.gene36098:CDS |
| GAAACATGAGGCGTAGCAGA+CGG | 0.631770 | 8.3:+52710460 | None:intergenic |
| AAGGTCGACACCAGCTGTAG+GGG | 0.632725 | 8.3:+52710768 | None:intergenic |
| GGACTTTATATTGCCAACAG+TGG | 0.633930 | 8.3:-52710799 | MS.gene36098:CDS |
| TGTAAGGATCTGCAGAGGCA+GGG | 0.634324 | 8.3:+52710428 | None:intergenic |
| AATCATACTTCACTTGCTGA+GGG | 0.634438 | 8.3:+52713895 | None:intergenic |
| TTTAAGGATACTAGTCACAC+TGG | 0.637072 | 8.3:+52713617 | None:intergenic |
| TCACTTGCTGAGGGCTGACG+AGG | 0.638605 | 8.3:+52713904 | None:intergenic |
| TACAAATGGATGGTTCCAGA+AGG | 0.638628 | 8.3:-52717971 | MS.gene36098:CDS |
| TGGTAACTGCGACGGAGTGT+TGG | 0.641533 | 8.3:+52720032 | None:intergenic |
| CACTTGTAAACGAGTATGGG+AGG | 0.642899 | 8.3:-52710609 | MS.gene36098:CDS |
| TGTCTGAGATTGGACTGGAA+GGG | 0.647405 | 8.3:+52710537 | None:intergenic |
| ATGGAAAAGGAATTGATACA+AGG | 0.650862 | 8.3:-52713777 | MS.gene36098:CDS |
| TGCAACCATCAAATGCTCAA+CGG | 0.651303 | 8.3:-52709617 | MS.gene36098:CDS |
| GACTGGAGGCACGTTCAATG+AGG | 0.653311 | 8.3:+52710360 | None:intergenic |
| CGGCCTCAGCCAGAACAGGA+AGG | 0.657536 | 8.3:+52710749 | None:intergenic |
| ATCGGAAAATGATCATGACA+TGG | 0.658251 | 8.3:-52711031 | MS.gene36098:CDS |
| ATGTGATGAAGCCATAACCC+TGG | 0.659479 | 8.3:+52709536 | None:intergenic |
| GTTCAAAGTCCAAGATCACA+AGG | 0.660327 | 8.3:-52709181 | MS.gene36098:CDS |
| TCATTAAAATAAATTCCAAG+AGG | 0.664224 | 8.3:-52711673 | MS.gene36098:CDS |
| TAGATTCTGATATTATTGAG+GGG | 0.665648 | 8.3:-52713036 | MS.gene36098:CDS |
| AAGGATACTAGTCACACTGG+TGG | 0.665785 | 8.3:+52713620 | None:intergenic |
| AGGGGTACCAGATCCACTGT+TGG | 0.672668 | 8.3:+52710786 | None:intergenic |
| GAGTGTTGCATCGTTGCCTG+CGG | 0.683195 | 8.3:-52713435 | MS.gene36098:CDS |
| GGCATTGTAAGGATCTGCAG+AGG | 0.687949 | 8.3:+52710423 | None:intergenic |
| TTATAGTTAACACTGCAGGA+TGG | 0.702188 | 8.3:+52717767 | None:intergenic |
| GGAGGTCATCCTCGACATCG+AGG | 0.704931 | 8.3:-52710591 | MS.gene36098:CDS |
| TAAAGTTGGTGAGAACATTG+CGG | 0.707715 | 8.3:-52711091 | MS.gene36098:CDS |
| GCAGCTGAAGTATTAACTGG+CGG | 0.713112 | 8.3:+52709756 | None:intergenic |
| TGTGTTGCTGTAGAGACTGG+AGG | 0.732552 | 8.3:+52710346 | None:intergenic |
| CGGTCTCACATCCAGCAAGG+GGG | 0.734557 | 8.3:-52709597 | MS.gene36098:CDS |
| CAGACATGATGATTGCAATG+GGG | 0.736172 | 8.3:+52711635 | None:intergenic |
| GGGTTGGGCAAAGAAACATG+AGG | 0.746589 | 8.3:+52710448 | None:intergenic |
| GGTTTGGCAGGAGAGCAAAG+AGG | 0.756976 | 8.3:-52709358 | MS.gene36098:intron |
| AGTGCCGGGTAGAAAATGTG+TGG | 0.789545 | 8.3:+52719921 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 52709096 | 52720061 | 52709096 | ID=MS.gene36098 |
| chr8.3 | mRNA | 52709096 | 52720061 | 52709096 | ID=MS.gene36098.t1;Parent=MS.gene36098 |
| chr8.3 | exon | 52719874 | 52720061 | 52719874 | ID=MS.gene36098.t1.exon1;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52719874 | 52720061 | 52719874 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52718666 | 52718738 | 52718666 | ID=MS.gene36098.t1.exon2;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52718666 | 52718738 | 52718666 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52718422 | 52718487 | 52718422 | ID=MS.gene36098.t1.exon3;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52718422 | 52718487 | 52718422 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52717936 | 52718001 | 52717936 | ID=MS.gene36098.t1.exon4;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52717936 | 52718001 | 52717936 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52717760 | 52717842 | 52717760 | ID=MS.gene36098.t1.exon5;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52717760 | 52717842 | 52717760 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52717474 | 52717525 | 52717474 | ID=MS.gene36098.t1.exon6;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52717474 | 52717525 | 52717474 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52717314 | 52717382 | 52717314 | ID=MS.gene36098.t1.exon7;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52717314 | 52717382 | 52717314 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52713903 | 52713970 | 52713903 | ID=MS.gene36098.t1.exon8;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52713903 | 52713970 | 52713903 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52713762 | 52713810 | 52713762 | ID=MS.gene36098.t1.exon9;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52713762 | 52713810 | 52713762 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52713577 | 52713661 | 52713577 | ID=MS.gene36098.t1.exon10;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52713577 | 52713661 | 52713577 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52713384 | 52713485 | 52713384 | ID=MS.gene36098.t1.exon11;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52713384 | 52713485 | 52713384 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52713004 | 52713055 | 52713004 | ID=MS.gene36098.t1.exon12;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52713004 | 52713055 | 52713004 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52712264 | 52712315 | 52712264 | ID=MS.gene36098.t1.exon13;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52712264 | 52712315 | 52712264 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52711598 | 52711714 | 52711598 | ID=MS.gene36098.t1.exon14;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52711598 | 52711714 | 52711598 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52710345 | 52711121 | 52710345 | ID=MS.gene36098.t1.exon15;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52710345 | 52711121 | 52710345 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52709523 | 52709823 | 52709523 | ID=MS.gene36098.t1.exon16;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52709523 | 52709823 | 52709523 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| chr8.3 | exon | 52709096 | 52709370 | 52709096 | ID=MS.gene36098.t1.exon17;Parent=MS.gene36098.t1 |
| chr8.3 | CDS | 52709096 | 52709370 | 52709096 | ID=cds.MS.gene36098.t1;Parent=MS.gene36098.t1 |
| Gene Sequence |
| Protein sequence |
