AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36409

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36409.t1 MTR_2g100250 98.677 756 10 0 1 756 1 756 0.0 1575
MS.gene36409.t1 MTR_8g016160 74.005 754 180 5 4 756 7 745 0.0 1171
MS.gene36409.t1 MTR_2g103730 44.636 811 385 19 4 756 5 809 0.0 634
MS.gene36409.t1 MTR_3g107360 43.445 778 381 17 30 756 53 822 0.0 624
MS.gene36409.t1 MTR_4g010650 42.222 810 403 19 5 756 6 808 0.0 612
MS.gene36409.t1 MTR_3g107320 43.117 770 388 17 32 756 62 826 0.0 604
MS.gene36409.t1 MTR_5g011050 41.321 772 382 20 36 749 90 848 0.0 543
MS.gene36409.t1 MTR_5g011060 40.674 772 387 20 36 749 84 842 4.64e-178 531
MS.gene36409.t1 MTR_8g033080 41.276 768 384 21 36 745 281 1039 5.98e-178 538
MS.gene36409.t1 MTR_7g075910 40.933 772 376 25 36 745 351 1104 8.25e-177 536
MS.gene36409.t1 MTR_5g023050 39.152 802 392 24 36 756 86 872 1.26e-176 529
MS.gene36409.t1 MTR_8g088690 40.076 786 391 21 36 756 72 842 2.03e-174 522
MS.gene36409.t1 MTR_3g114840 39.547 794 392 23 36 756 73 851 3.08e-171 514
MS.gene36409.t1 MTR_3g114840 39.853 680 329 18 36 645 73 742 2.72e-144 442
MS.gene36409.t1 MTR_8g033080 39.312 552 275 16 36 534 281 825 9.49e-108 348
MS.gene36409.t1 MTR_1g083620 33.462 260 123 14 427 670 461 686 2.27e-22 103
MS.gene36409.t1 MTR_1g083620 28.440 218 126 5 185 392 127 324 5.01e-16 82.8
MS.gene36409.t1 MTR_1g083620 33.462 260 123 14 427 670 721 946 2.37e-22 103
MS.gene36409.t1 MTR_1g083620 28.440 218 126 5 185 392 387 584 4.50e-16 83.2
MS.gene36409.t1 MTR_2g435560 30.837 227 109 8 425 638 764 955 1.28e-19 94.7
MS.gene36409.t1 MTR_2g435560 25.740 338 166 12 145 425 324 633 9.74e-16 82.4
MS.gene36409.t1 MTR_2g435560 30.837 227 109 8 425 638 629 820 1.37e-19 94.7
MS.gene36409.t1 MTR_2g435560 26.804 291 143 10 145 393 189 451 1.16e-15 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36409.t1 AT1G55180 62.240 768 263 11 3 756 8 762 0.0 1001
MS.gene36409.t1 AT1G55180 62.097 744 255 11 27 756 10 740 0.0 965
MS.gene36409.t1 AT3G15730 43.473 766 382 16 36 756 51 810 0.0 615
MS.gene36409.t1 AT1G52570 43.342 766 383 19 36 756 51 810 0.0 611
MS.gene36409.t1 AT1G52570 43.342 766 383 19 36 756 51 810 0.0 611
MS.gene36409.t1 AT1G52570 43.342 766 383 19 36 756 51 810 0.0 611
MS.gene36409.t1 AT5G25370 42.753 821 396 18 4 756 6 820 0.0 584
MS.gene36409.t1 AT5G25370 42.753 821 396 18 4 756 6 820 0.0 584
MS.gene36409.t1 AT5G25370 42.753 821 396 18 4 756 6 820 0.0 584
MS.gene36409.t1 AT5G25370 45.027 744 359 17 57 756 8 745 0.0 569
MS.gene36409.t1 AT4G11830 41.753 776 370 23 36 745 55 814 1.04e-180 538
MS.gene36409.t1 AT4G11830 41.753 776 370 23 36 745 87 846 1.94e-180 538
MS.gene36409.t1 AT4G11840 41.335 779 370 25 36 745 96 856 4.60e-177 530
MS.gene36409.t1 AT2G42010 40.808 767 385 22 36 745 319 1073 6.95e-177 536
MS.gene36409.t1 AT4G11840 40.927 777 346 24 36 745 96 826 2.36e-175 524
MS.gene36409.t1 AT4G11850 41.268 773 378 23 36 745 89 848 1.65e-174 523
MS.gene36409.t1 AT2G42010 39.520 792 385 22 36 745 319 1098 2.16e-173 528
MS.gene36409.t1 AT4G35790 38.269 797 397 23 36 756 80 857 2.36e-168 507
MS.gene36409.t1 AT4G00240 39.323 768 395 21 36 745 11 765 4.25e-168 503
MS.gene36409.t1 AT4G00240 38.605 803 407 24 16 745 93 882 1.86e-167 506
MS.gene36409.t1 AT4G35790 37.748 808 397 23 36 756 80 868 1.31e-166 503
MS.gene36409.t1 AT4G00240 39.323 768 395 21 36 745 163 917 1.97e-166 504
MS.gene36409.t1 AT4G35790 37.705 610 299 17 36 573 80 680 1.34e-121 380
MS.gene36409.t1 AT4G11830 40.036 562 268 18 36 542 87 634 1.51e-114 360
MS.gene36409.t1 AT4G11830 40.110 546 258 18 36 526 87 618 5.24e-109 346
MS.gene36409.t1 AT3G16785 32.727 220 114 8 425 638 739 930 5.72e-20 95.9
MS.gene36409.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.28e-15 80.1
MS.gene36409.t1 AT3G16785 32.727 220 114 8 425 638 739 930 5.72e-20 95.9
MS.gene36409.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.28e-15 80.1
MS.gene36409.t1 AT3G16785 32.727 220 114 8 425 638 739 930 5.88e-20 95.9
MS.gene36409.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.76e-15 80.1
MS.gene36409.t1 AT3G16785 32.727 220 114 8 425 638 739 930 6.05e-20 95.9
MS.gene36409.t1 AT3G16785 29.577 213 116 7 193 393 388 578 3.68e-15 80.5
MS.gene36409.t1 AT3G16785 32.727 220 114 8 425 638 739 930 7.54e-20 95.5
MS.gene36409.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.37e-15 80.1
MS.gene36409.t1 AT3G16785 32.727 220 114 8 425 638 739 930 7.54e-20 95.5
MS.gene36409.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.37e-15 80.1
MS.gene36409.t1 AT3G05630 29.804 255 143 9 425 670 694 921 3.63e-19 93.2
MS.gene36409.t1 AT3G05630 27.477 222 123 7 185 392 375 572 6.18e-14 76.3

Find 164 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCTTTGTTCTTGATAAA+TGG 0.146812 2.2:-2873846 None:intergenic
TCTTGAACTGGTTCACTTTC+AGG 0.161180 2.2:-2874653 None:intergenic
TAAAATTAAGGTTTATATTA+TGG 0.167823 2.2:+2873236 MS.gene36409:CDS
TGCACACATTCTAAACTTTC+TGG 0.177165 2.2:-2875641 None:intergenic
GTGAATGTCACCTTTGCTTA+TGG 0.212678 2.2:-2875558 None:intergenic
TTTCAGTGTTTATTTGTAAA+TGG 0.237490 2.2:+2872959 MS.gene36409:intron
ATGGTTCAAGCCAGCAAATT+TGG 0.246559 2.2:+2873255 MS.gene36409:CDS
TTCCTCAACAAGCACTTCTA+TGG 0.258809 2.2:+2874325 MS.gene36409:CDS
TCACTTTCAGGCACTCCTTC+TGG 0.260249 2.2:-2874641 None:intergenic
AAAACAACATGTACCATATT+AGG 0.268038 2.2:+2873118 MS.gene36409:CDS
GATGCTCATGCTTGTGTTAC+TGG 0.268529 2.2:+2874197 MS.gene36409:CDS
ACATCCTCCCATAACTTTCT+AGG 0.271863 2.2:-2873427 None:intergenic
GGCACCCTCCAATGAAATAT+TGG 0.278690 2.2:-2874493 None:intergenic
CAAATCAAGAACTAAAATTA+AGG 0.279298 2.2:+2873224 MS.gene36409:CDS
CTACAGCAGTGAAGAAATTA+TGG 0.290427 2.2:+2875700 MS.gene36409:CDS
CAACTTGGTTCCAAATTTGC+TGG 0.292857 2.2:-2873265 None:intergenic
TTTGCCCGTCCATCGATCTT+TGG 0.295154 2.2:-2875478 None:intergenic
TCAACTGTTGTGCCTTGATT+TGG 0.299930 2.2:-2873147 None:intergenic
TTGCTTCGACGTAAGCTTCA+TGG 0.302186 2.2:-2874436 None:intergenic
CCCATGATAGTAACACAAAA+TGG 0.306781 2.2:+2875752 MS.gene36409:CDS
TTCCCTCTACTAATGGAAAA+TGG 0.318183 2.2:+2873196 MS.gene36409:CDS
TGGCTGTAAGGGTTATGATT+TGG 0.320459 2.2:+2873805 MS.gene36409:CDS
ATATGTACCAGAACCATCTT+AGG 0.324723 2.2:-2873508 None:intergenic
GGCTGTAAGGGTTATGATTT+GGG 0.332421 2.2:+2873806 MS.gene36409:CDS
GTGTTACTGGCGAGGCGGCT+TGG 0.335844 2.2:+2874210 MS.gene36409:CDS
TGGATCCTTCCCTCTACTAA+TGG 0.347290 2.2:+2873189 MS.gene36409:CDS
GCACTCCAGTATTGAGTATC+AGG 0.351096 2.2:-2874845 None:intergenic
TGTTACTGGCGAGGCGGCTT+GGG 0.360313 2.2:+2874211 MS.gene36409:CDS
TCTCTGTCATTGACAGAGTT+AGG 0.362506 2.2:-2874008 None:intergenic
TTTCAATCCTAAGATGGTTC+TGG 0.364284 2.2:+2873501 MS.gene36409:CDS
ACATGACAATTAGACCTTTG+TGG 0.370512 2.2:-2873340 None:intergenic
AGCTTTGGTATCCACGGTTA+TGG 0.372953 2.2:-2873985 None:intergenic
ATTGACAGAGTTAGGAGCTT+TGG 0.373133 2.2:-2874000 None:intergenic
ATTGAAAACCAATATTTCAT+TGG 0.373278 2.2:+2874485 MS.gene36409:CDS
TTCAAACAATGAATGTTTCT+CGG 0.374381 2.2:-2874081 None:intergenic
GCACTTCTATGGAAAGGAAT+TGG 0.375461 2.2:+2874336 MS.gene36409:CDS
AAGCTTACGTCGAAGCAATA+AGG 0.376408 2.2:+2874441 MS.gene36409:CDS
GAAGTGCTTGTTGAGGAAAT+AGG 0.378292 2.2:-2874320 None:intergenic
GATGACCTATATATACTAAT+AGG 0.379557 2.2:+2875440 MS.gene36409:CDS
CACAAGAAAGTGAACGTGTT+TGG 0.380930 2.2:+2873035 MS.gene36409:CDS
GCATCATGCCATGGCTCTCT+TGG 0.387236 2.2:-2874179 None:intergenic
TGGAGTTCCTAGAAAGTTAT+GGG 0.388103 2.2:+2873420 MS.gene36409:CDS
CTCTTCCTGATACTCAATAC+TGG 0.390043 2.2:+2874840 MS.gene36409:CDS
TGATGATGAGCGAAGATTGT+AGG 0.393602 2.2:-2873957 None:intergenic
TGAATGTCACCTTTGCTTAT+GGG 0.394279 2.2:-2875557 None:intergenic
CAACTCCATCTTGATGAAAC+TGG 0.398815 2.2:-2875529 None:intergenic
GGGAATTTGTCATGTAATCT+AGG 0.401511 2.2:-2873936 None:intergenic
GTGGAGTTCCTAGAAAGTTA+TGG 0.405314 2.2:+2873419 MS.gene36409:CDS
GGATGTTTATAAAGCTATTG+AGG 0.411752 2.2:+2873444 MS.gene36409:CDS
CAGAAGAAGGAGTGGCTGTA+AGG 0.414409 2.2:+2873793 MS.gene36409:CDS
TTCTACCAGACAAATATTGC+AGG 0.419367 2.2:+2874134 MS.gene36409:CDS
AAGGGAAATGAAGGAGAGTA+GGG 0.420361 2.2:-2872501 None:intergenic
CTTAGTAGCTTTGTCCAACT+TGG 0.425327 2.2:-2873280 None:intergenic
GAAGGGAAATGAAGGAGAGT+AGG 0.425566 2.2:-2872502 None:intergenic
GCATGTGGGATTTCTGTTTG+AGG 0.436003 2.2:-2873732 None:intergenic
GTTCACTCCAAGCTCGTGAT+AGG 0.437935 2.2:+2874896 MS.gene36409:CDS
TCATTGGAGGGTGCCATTTG+TGG 0.442041 2.2:+2874501 MS.gene36409:CDS
GCAATGGATAAGCTCATTCA+TGG 0.442063 2.2:+2872447 None:intergenic
ATCATAGAAAGTGGTGAGCC+AGG 0.450323 2.2:+2874734 MS.gene36409:CDS
CACACTGAATCTGAAATGTT+TGG 0.451106 2.2:-2873060 None:intergenic
CCTTGCAAATAGGGAAAAGA+AGG 0.453199 2.2:+2874787 MS.gene36409:CDS
ATCTTGATTGTCACATAAGC+AGG 0.455101 2.2:-2872986 None:intergenic
CTGATCCTATTAGTATATAT+AGG 0.457591 2.2:-2875445 None:intergenic
TCTTATCTTTCTGCCACAAA+TGG 0.460881 2.2:-2874514 None:intergenic
GATGATGAGCGAAGATTGTA+GGG 0.462313 2.2:-2873956 None:intergenic
TTCATTAGAGCTCACATTGA+AGG 0.462875 2.2:-2872520 None:intergenic
AAATATTTAGTATATATTGC+AGG 0.463860 2.2:+2873472 MS.gene36409:CDS
GTTCTTGATAAATGGAAATG+AGG 0.465855 2.2:-2873838 None:intergenic
CTGGTCTTTCAATCCTAAGA+TGG 0.467682 2.2:+2873495 MS.gene36409:CDS
TCAAAAGGAGGTTGGAAAGT+AGG 0.467738 2.2:-2873391 None:intergenic
CAATGCAGTATATCTTGAAC+TGG 0.467818 2.2:-2874665 None:intergenic
CTATCATGGGGTAAGTTACT+AGG 0.473210 2.2:-2875739 None:intergenic
GTGCAGAGAATGTGCTCAAT+AGG 0.473934 2.2:+2875659 MS.gene36409:CDS
CACAATTATCAAAAGGAGGT+TGG 0.476823 2.2:-2873399 None:intergenic
CTAAGTAGTGAAGAGTTTCA+AGG 0.476881 2.2:+2873298 MS.gene36409:CDS
ACAAGATTAAAGCAAGAGAA+AGG 0.477212 2.2:+2874588 MS.gene36409:CDS
CTGTTAGCTTTCTAAACAGT+TGG 0.477520 2.2:-2874400 None:intergenic
TATTTGTCTGGTAGAAATCA+TGG 0.479616 2.2:-2874127 None:intergenic
AAGGAAGACAGTTTGATCAA+TGG 0.480801 2.2:+2873169 MS.gene36409:CDS
TCCTATTGAGATTGCACTCA+AGG 0.481371 2.2:+2874559 MS.gene36409:CDS
AACTTTATTTCTCTAGCATG+TGG 0.485581 2.2:-2873747 None:intergenic
TAGCCCCTGCAATATTTGTC+TGG 0.486823 2.2:-2874139 None:intergenic
ATTAGGAAAATTCCAAATCA+AGG 0.487446 2.2:+2873135 MS.gene36409:CDS
ACAATGATGTATAAGTTGAT+TGG 0.489344 2.2:+2874704 MS.gene36409:CDS
GAAAACCAATATTTCATTGG+AGG 0.491937 2.2:+2874488 MS.gene36409:CDS
ACCTTGAGTGCAATCTCAAT+AGG 0.493010 2.2:-2874560 None:intergenic
GTGAAGAGTTTCAAGGGCTG+AGG 0.494050 2.2:+2873305 MS.gene36409:CDS
AATCAAGGCACAACAGTTGA+AGG 0.494105 2.2:+2873150 MS.gene36409:CDS
AAGTAATCTCTCGGATGTCC+TGG 0.496223 2.2:-2874752 None:intergenic
AAAACCAATATTTCATTGGA+GGG 0.496243 2.2:+2874489 MS.gene36409:CDS
CTCTTGGACCTCCTTTGTTG+AGG 0.496416 2.2:-2874163 None:intergenic
GGAACTCCACAATTATCAAA+AGG 0.498863 2.2:-2873406 None:intergenic
GGCACTCCTTCTGGCCACAT+TGG 0.503394 2.2:-2874632 None:intergenic
AATCATACCTATCACGAGCT+TGG 0.505438 2.2:-2874903 None:intergenic
CTCACATTGAAGGGAAATGA+AGG 0.505783 2.2:-2872510 None:intergenic
AAGCAATAAGGCGTGCCGAT+AGG 0.510171 2.2:+2874453 MS.gene36409:CDS
AAGATCGATGGACGGGCAAA+GGG 0.511045 2.2:+2875481 MS.gene36409:CDS
GGCTACCAGTTTCATCAAGA+TGG 0.515157 2.2:+2875524 MS.gene36409:CDS
CAAGATAGACAATAAGAAAG+TGG 0.515400 2.2:+2873003 MS.gene36409:CDS
AAGAAATTCAAGTAATCTCT+CGG 0.518087 2.2:-2874761 None:intergenic
CAGTATTGAGTATCAGGAAG+AGG 0.519004 2.2:-2874839 None:intergenic
AAAGATCGATGGACGGGCAA+AGG 0.521722 2.2:+2875480 MS.gene36409:CDS
CATGCTAGAGAAATAAAGTT+GGG 0.529280 2.2:+2873750 MS.gene36409:CDS
GATGTTTATAAAGCTATTGA+GGG 0.530650 2.2:+2873445 MS.gene36409:CDS
AGAAGAAGGAGTGGCTGTAA+GGG 0.531289 2.2:+2873794 MS.gene36409:CDS
ACTTTATTTCTCTAGCATGT+GGG 0.537734 2.2:-2873746 None:intergenic
ATTGGAAAGTGCAAGTATAC+CGG 0.542544 2.2:+2874354 MS.gene36409:CDS
TCATTAGAGCTCACATTGAA+GGG 0.542682 2.2:-2872519 None:intergenic
TAGGGAAAAGAAGGAAAATG+AGG 0.551505 2.2:+2874796 MS.gene36409:CDS
CAGCAAATTTGGAACCAAGT+TGG 0.555393 2.2:+2873266 MS.gene36409:CDS
ATTGTTTGAAACACTTGCTG+AGG 0.558143 2.2:+2874094 MS.gene36409:CDS
TGAACCAAAGATCGATGGAC+GGG 0.560632 2.2:+2875474 MS.gene36409:CDS
GAGGTTGGAAAGTAGGTGAA+TGG 0.561082 2.2:-2873384 None:intergenic
CAGTGAAGAAATTATGGACA+TGG 0.568985 2.2:+2875706 MS.gene36409:CDS
TCTGTGGAAGATCTAACTAA+TGG 0.569159 2.2:+2875776 MS.gene36409:CDS
TCAGGAAGAGGAGAATGTGG+TGG 0.569774 2.2:-2874827 None:intergenic
TTTCCATTTATCAAGAACAA+AGG 0.570612 2.2:+2873843 MS.gene36409:CDS
ATTTAGTATATATTGCAGGC+TGG 0.570668 2.2:+2873476 MS.gene36409:CDS
GATACAAAAGCTCTAGTGAA+AGG 0.570925 2.2:+2875815 MS.gene36409:CDS
TTCAATGTACACAAACCTAT+CGG 0.572544 2.2:-2874468 None:intergenic
GCTCATTCATGGAACAATTG+AGG 0.574540 2.2:+2872458 MS.gene36409:CDS
ACATGCTAGAGAAATAAAGT+TGG 0.574919 2.2:+2873749 MS.gene36409:CDS
CAACAAGCACTTCTATGGAA+AGG 0.578353 2.2:+2874330 MS.gene36409:CDS
GTCATACCAATGTGGCCAGA+AGG 0.580529 2.2:+2874626 MS.gene36409:CDS
TAAGTAGTGAAGAGTTTCAA+GGG 0.580907 2.2:+2873299 MS.gene36409:CDS
GGAGAAGCAATCATAGAAAG+TGG 0.580963 2.2:+2874725 MS.gene36409:CDS
GTTAGGAGCTTTGGTATCCA+CGG 0.582477 2.2:-2873991 None:intergenic
TTCCATAGAAGTGCTTGTTG+AGG 0.590769 2.2:-2874327 None:intergenic
GCTCAATAGGAGATAAAATG+TGG 0.592126 2.2:+2875672 MS.gene36409:CDS
GGTGGTTTAGATTTGTGCGA+CGG 0.597565 2.2:+2874047 MS.gene36409:CDS
TCTACCAGACAAATATTGCA+GGG 0.601616 2.2:+2874135 MS.gene36409:CDS
GTATCAGGAAGAGGAGAATG+TGG 0.604673 2.2:-2874830 None:intergenic
TGAAGAGTTTCAAGGGCTGA+GGG 0.609783 2.2:+2873306 MS.gene36409:CDS
CTGAGACATGATCAATCGAC+CGG 0.610594 2.2:-2874373 None:intergenic
AAAGAAAGCAGAAGAAGGAG+TGG 0.610818 2.2:+2873785 MS.gene36409:CDS
GGCTAAGTGGTAATGACAGA+GGG 0.611158 2.2:-2875857 None:intergenic
AGTAACACAAAATGGATCTG+TGG 0.620720 2.2:+2875760 MS.gene36409:CDS
ACACAAAAGTAGTATGCAGA+AGG 0.623210 2.2:+2873910 MS.gene36409:CDS
GTGAACCAAAGATCGATGGA+CGG 0.630105 2.2:+2875473 MS.gene36409:CDS
CAAGCATGAGCATCATGCCA+TGG 0.632322 2.2:-2874188 None:intergenic
CAGTTCAAGATATACTGCAT+TGG 0.636717 2.2:+2874666 MS.gene36409:CDS
GTTGATCATCCCATAAGCAA+AGG 0.638827 2.2:+2875548 MS.gene36409:CDS
TGAAGAAATTATGGACATGG+AGG 0.639170 2.2:+2875709 MS.gene36409:CDS
CTACCAGACAAATATTGCAG+GGG 0.640062 2.2:+2874136 MS.gene36409:CDS
AGGGACACAGAAATTGCGAT+CGG 0.641781 2.2:+2875500 MS.gene36409:CDS
AAATGTGAACCAAAGATCGA+TGG 0.642298 2.2:+2875469 MS.gene36409:CDS
ACTCCACAATTATCAAAAGG+AGG 0.646785 2.2:-2873403 None:intergenic
AAGGAGGTCCAAGAGAGCCA+TGG 0.649131 2.2:+2874171 MS.gene36409:CDS
GAAGAAATTATGGACATGGA+GGG 0.652171 2.2:+2875710 MS.gene36409:CDS
TCATGCTTGTGTTACTGGCG+AGG 0.655164 2.2:+2874202 MS.gene36409:CDS
GACACAGAAATTGCGATCGG+AGG 0.656668 2.2:+2875503 MS.gene36409:CDS
GGGGCTAGCCTCAACAAAGG+AGG 0.660504 2.2:+2874155 MS.gene36409:CDS
TGCTTGTGTTACTGGCGAGG+CGG 0.660654 2.2:+2874205 MS.gene36409:CDS
GCAGGGGCTAGCCTCAACAA+AGG 0.667195 2.2:+2874152 MS.gene36409:CDS
TGGCTAAGTGGTAATGACAG+AGG 0.667320 2.2:-2875858 None:intergenic
TGGCAGAAAGATAAGAACAG+TGG 0.670376 2.2:+2874521 MS.gene36409:CDS
TGTGATGAACACACATGACG+AGG 0.674406 2.2:+2873866 MS.gene36409:CDS
TATTGAGATTGCACTCAAGG+TGG 0.678261 2.2:+2874562 MS.gene36409:CDS
AGTTCCTAGAAAGTTATGGG+AGG 0.683421 2.2:+2873423 MS.gene36409:CDS
GGAAGATCTAACTAATGGTG+AGG 0.696498 2.2:+2875781 MS.gene36409:CDS
TGTATATAGTCATACCAATG+TGG 0.699010 2.2:+2874618 MS.gene36409:CDS
GGGATGCTACATTTCCACAA+AGG 0.704533 2.2:+2873326 MS.gene36409:CDS
ACGAATACAGAATGTCAATG+TGG 0.720257 2.2:+2875579 MS.gene36409:CDS
TCAATGTGGTATGAACACAC+TGG 0.796931 2.2:+2875593 MS.gene36409:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAAAATAAAGAGA+AGG - chr2.2:2872596-2872615 None:intergenic 10.0%
!! TAAAATTAAGGTTTATATTA+TGG + chr2.2:2873236-2873255 MS.gene36409:CDS 10.0%
!!! TATATTGATATACATTTTTT+TGG + chr2.2:2873557-2873576 MS.gene36409:intron 10.0%
!! AAATATTTAGTATATATTGC+AGG + chr2.2:2873472-2873491 MS.gene36409:CDS 15.0%
!! ATTAAACCAACATATATTTA+TGG - chr2.2:2874932-2874951 None:intergenic 15.0%
!! ATTAAACCATAAATATATGT+TGG + chr2.2:2874923-2874942 MS.gene36409:intron 15.0%
!!! CAAATTTTGTCAATATTATA+GGG - chr2.2:2872571-2872590 None:intergenic 15.0%
!!! TCAAATTTTGTCAATATTAT+AGG - chr2.2:2872572-2872591 None:intergenic 15.0%
!! AGTTGTTGAACATATATATA+TGG - chr2.2:2875241-2875260 None:intergenic 20.0%
!! ATTGAAAACCAATATTTCAT+TGG + chr2.2:2874485-2874504 MS.gene36409:CDS 20.0%
!! CAAATCAAGAACTAAAATTA+AGG + chr2.2:2873224-2873243 MS.gene36409:CDS 20.0%
!! CAAGTGAATTTATAATACAT+AGG + chr2.2:2875071-2875090 MS.gene36409:intron 20.0%
!! CTATGTATTATAAATTCACT+TGG - chr2.2:2875073-2875092 None:intergenic 20.0%
!! TTCCAATACAAAAACTTAAT+AGG + chr2.2:2875302-2875321 MS.gene36409:intron 20.0%
!! TTTCAGTGTTTATTTGTAAA+TGG + chr2.2:2872959-2872978 MS.gene36409:intron 20.0%
!!! AATAATTGGATTTTAAAAGG+AGG + chr2.2:2875165-2875184 MS.gene36409:intron 20.0%
!!! ACAATTTTTTTTTATTGACG+TGG - chr2.2:2875105-2875124 None:intergenic 20.0%
!!! ATAATTGGATTTTAAAAGGA+GGG + chr2.2:2875166-2875185 MS.gene36409:intron 20.0%
!!! ATTAAGTTTTTGTATTGGAA+AGG - chr2.2:2875302-2875321 None:intergenic 20.0%
!!! CCAAATAATTGGATTTTAAA+AGG + chr2.2:2875162-2875181 MS.gene36409:intron 20.0%
!!! CCTTTTAAAATCCAATTATT+TGG - chr2.2:2875165-2875184 None:intergenic 20.0%
!!! CTTAATTTTAGTTCTTGATT+TGG - chr2.2:2873226-2873245 None:intergenic 20.0%
!!! TGATATACATTTTTTTGGTT+AGG + chr2.2:2873562-2873581 MS.gene36409:intron 20.0%
! AAAACAACATGTACCATATT+AGG + chr2.2:2873118-2873137 MS.gene36409:CDS 25.0%
! AAAACCAATATTTCATTGGA+GGG + chr2.2:2874489-2874508 MS.gene36409:CDS 25.0%
! AAGAAATTCAAGTAATCTCT+CGG - chr2.2:2874764-2874783 None:intergenic 25.0%
! ACAGAAAAATAGAAGATTCA+TGG + chr2.2:2874868-2874887 MS.gene36409:CDS 25.0%
! ATATATATATGGCTTGATCA+TGG - chr2.2:2875230-2875249 None:intergenic 25.0%
! ATTAGGAAAATTCCAAATCA+AGG + chr2.2:2873135-2873154 MS.gene36409:CDS 25.0%
! ATTGAAGAAATAATAACAGG+AGG - chr2.2:2872796-2872815 None:intergenic 25.0%
! CACATTATAGAATATGTAGT+TGG - chr2.2:2872911-2872930 None:intergenic 25.0%
! CTGATCCTATTAGTATATAT+AGG - chr2.2:2875448-2875467 None:intergenic 25.0%
! GACATTGAAGAAATAATAAC+AGG - chr2.2:2872799-2872818 None:intergenic 25.0%
! GATGACCTATATATACTAAT+AGG + chr2.2:2875440-2875459 MS.gene36409:CDS 25.0%
! GATGTTTATAAAGCTATTGA+GGG + chr2.2:2873445-2873464 MS.gene36409:CDS 25.0%
! TTCAAACAATGAATGTTTCT+CGG - chr2.2:2874084-2874103 None:intergenic 25.0%
! TTTCCATTTATCAAGAACAA+AGG + chr2.2:2873843-2873862 MS.gene36409:CDS 25.0%
!! AATAGGAATGAGATTTTCTA+AGG - chr2.2:2874306-2874325 None:intergenic 25.0%
!! AGAGAAATTATGAGCTTTTT+GGG + chr2.2:2874026-2874045 MS.gene36409:CDS 25.0%
!! CTCCTATTAAGTTTTTGTAT+TGG - chr2.2:2875307-2875326 None:intergenic 25.0%
!! TAGCTAATTTTGAACAAAGA+TGG + chr2.2:2874240-2874259 MS.gene36409:CDS 25.0%
!!! ACAATGATGTATAAGTTGAT+TGG + chr2.2:2874704-2874723 MS.gene36409:CDS 25.0%
!!! GATTTGGAATTTTCCTAATA+TGG - chr2.2:2873134-2873153 None:intergenic 25.0%
ACAAGATTAAAGCAAGAGAA+AGG + chr2.2:2874588-2874607 MS.gene36409:CDS 30.0%
ACACCTTTGTTCTTGATAAA+TGG - chr2.2:2873849-2873868 None:intergenic 30.0%
ACATGCTAGAGAAATAAAGT+TGG + chr2.2:2873749-2873768 MS.gene36409:CDS 30.0%
AGTTAAACCAAGATCATGAA+TGG - chr2.2:2875386-2875405 None:intergenic 30.0%
ATTTAGTATATATTGCAGGC+TGG + chr2.2:2873476-2873495 MS.gene36409:CDS 30.0%
CAAGATAGACAATAAGAAAG+TGG + chr2.2:2873003-2873022 MS.gene36409:CDS 30.0%
CATGCTAGAGAAATAAAGTT+GGG + chr2.2:2873750-2873769 MS.gene36409:CDS 30.0%
GAAAACCAATATTTCATTGG+AGG + chr2.2:2874488-2874507 MS.gene36409:CDS 30.0%
GGATGTTTATAAAGCTATTG+AGG + chr2.2:2873444-2873463 MS.gene36409:CDS 30.0%
GTTCTTGATAAATGGAAATG+AGG - chr2.2:2873841-2873860 None:intergenic 30.0%
TAAGTAGTGAAGAGTTTCAA+GGG + chr2.2:2873299-2873318 MS.gene36409:CDS 30.0%
TAGATCCAAAATACGAGTAA+GGG + chr2.2:2875138-2875157 MS.gene36409:intron 30.0%
TATTTGTCTGGTAGAAATCA+TGG - chr2.2:2874130-2874149 None:intergenic 30.0%
TGTATATAGTCATACCAATG+TGG + chr2.2:2874618-2874637 MS.gene36409:CDS 30.0%
TGTTACAAGTATGACTATAG+AGG - chr2.2:2872619-2872638 None:intergenic 30.0%
TTAGATCCAAAATACGAGTA+AGG + chr2.2:2875137-2875156 MS.gene36409:intron 30.0%
TTCAATGTACACAAACCTAT+CGG - chr2.2:2874471-2874490 None:intergenic 30.0%
TTGAAAAAGAAAGCAGAAGA+AGG + chr2.2:2873780-2873799 MS.gene36409:CDS 30.0%
! AACTTTATTTCTCTAGCATG+TGG - chr2.2:2873750-2873769 None:intergenic 30.0%
! ACTTTATTTCTCTAGCATGT+GGG - chr2.2:2873749-2873768 None:intergenic 30.0%
! AGACTTTTGTACACAAAAGT+GGG + chr2.2:2874995-2875014 MS.gene36409:intron 30.0%
! ATTTCTTTTGCCTTGCAAAT+AGG + chr2.2:2874777-2874796 MS.gene36409:CDS 30.0%
! CAGAGAAATTATGAGCTTTT+TGG + chr2.2:2874025-2874044 MS.gene36409:CDS 30.0%
! TACCATTTTCCATTAGTAGA+GGG - chr2.2:2873201-2873220 None:intergenic 30.0%
! TAGACTTTTGTACACAAAAG+TGG + chr2.2:2874994-2875013 MS.gene36409:intron 30.0%
! TTACCATTTTCCATTAGTAG+AGG - chr2.2:2873202-2873221 None:intergenic 30.0%
! TTTCTTTTGCCTTGCAAATA+GGG + chr2.2:2874778-2874797 MS.gene36409:CDS 30.0%
!! CATTTTGTGTTACTATCATG+GGG - chr2.2:2875754-2875773 None:intergenic 30.0%
!! CCATTTTGTGTTACTATCAT+GGG - chr2.2:2875755-2875774 None:intergenic 30.0%
!! TCCATTTTGTGTTACTATCA+TGG - chr2.2:2875756-2875775 None:intergenic 30.0%
!!! ACATGTTGTTTTCAGTGTAA+TGG - chr2.2:2873110-2873129 None:intergenic 30.0%
!!! GTTTTTTGTCCAAATAAGAC+TGG + chr2.2:2872651-2872670 MS.gene36409:intron 30.0%
!!! TGTTGGTTTAATTGCAGTTT+TGG + chr2.2:2874940-2874959 MS.gene36409:intron 30.0%
AAATGTGAACCAAAGATCGA+TGG + chr2.2:2875469-2875488 MS.gene36409:CDS 35.0%
AACGAATCTTAGTATCAGCT+CGG + chr2.2:2873608-2873627 MS.gene36409:intron 35.0%
AAGGAAGACAGTTTGATCAA+TGG + chr2.2:2873169-2873188 MS.gene36409:CDS 35.0%
AAGTCTACAAATTTCGTGAG+CGG - chr2.2:2874981-2875000 None:intergenic 35.0%
ACACAAAAGTAGTATGCAGA+AGG + chr2.2:2873910-2873929 MS.gene36409:CDS 35.0%
ACATGACAATTAGACCTTTG+TGG - chr2.2:2873343-2873362 None:intergenic 35.0%
ACGAATACAGAATGTCAATG+TGG + chr2.2:2875579-2875598 MS.gene36409:CDS 35.0%
ACTCCACAATTATCAAAAGG+AGG - chr2.2:2873406-2873425 None:intergenic 35.0%
AGTAACACAAAATGGATCTG+TGG + chr2.2:2875760-2875779 MS.gene36409:CDS 35.0%
AGTATATATAGGTCATCCAC+TGG - chr2.2:2875437-2875456 None:intergenic 35.0%
ATATGTACCAGAACCATCTT+AGG - chr2.2:2873511-2873530 None:intergenic 35.0%
ATCTTGATTGTCACATAAGC+AGG - chr2.2:2872989-2873008 None:intergenic 35.0%
CAATGCAGTATATCTTGAAC+TGG - chr2.2:2874668-2874687 None:intergenic 35.0%
CACAATTATCAAAAGGAGGT+TGG - chr2.2:2873402-2873421 None:intergenic 35.0%
CAGTGAAGAAATTATGGACA+TGG + chr2.2:2875706-2875725 MS.gene36409:CDS 35.0%
CAGTTCAAGATATACTGCAT+TGG + chr2.2:2874666-2874685 MS.gene36409:CDS 35.0%
CCCATGATAGTAACACAAAA+TGG + chr2.2:2875752-2875771 MS.gene36409:CDS 35.0%
CTAAGTAGTGAAGAGTTTCA+AGG + chr2.2:2873298-2873317 MS.gene36409:CDS 35.0%
CTACAGCAGTGAAGAAATTA+TGG + chr2.2:2875700-2875719 MS.gene36409:CDS 35.0%
GAAAACACCATTCATGATCT+TGG + chr2.2:2875376-2875395 MS.gene36409:intron 35.0%
GAAGAAATTATGGACATGGA+GGG + chr2.2:2875710-2875729 MS.gene36409:CDS 35.0%
GCTCAATAGGAGATAAAATG+TGG + chr2.2:2875672-2875691 MS.gene36409:CDS 35.0%
GGAACTCCACAATTATCAAA+AGG - chr2.2:2873409-2873428 None:intergenic 35.0%
GGGAATTTGTCATGTAATCT+AGG - chr2.2:2873939-2873958 None:intergenic 35.0%
TAGGGAAAAGAAGGAAAATG+AGG + chr2.2:2874796-2874815 MS.gene36409:CDS 35.0%
TCATCAAAAAACCATAACCG+TGG + chr2.2:2873974-2873993 MS.gene36409:CDS 35.0%
TCATTAGAGCTCACATTGAA+GGG - chr2.2:2872522-2872541 None:intergenic 35.0%
TCTACCAGACAAATATTGCA+GGG + chr2.2:2874135-2874154 MS.gene36409:CDS 35.0%
TCTGTGGAAGATCTAACTAA+TGG + chr2.2:2875776-2875795 MS.gene36409:CDS 35.0%
TCTTATCTTTCTGCCACAAA+TGG - chr2.2:2874517-2874536 None:intergenic 35.0%
TGAAGAAATTATGGACATGG+AGG + chr2.2:2875709-2875728 MS.gene36409:CDS 35.0%
TGAATGTCACCTTTGCTTAT+GGG - chr2.2:2875560-2875579 None:intergenic 35.0%
TGCACACATTCTAAACTTTC+TGG - chr2.2:2875644-2875663 None:intergenic 35.0%
TGGAGTTCCTAGAAAGTTAT+GGG + chr2.2:2873420-2873439 MS.gene36409:CDS 35.0%
TTCATTAGAGCTCACATTGA+AGG - chr2.2:2872523-2872542 None:intergenic 35.0%
TTCCCTCTACTAATGGAAAA+TGG + chr2.2:2873196-2873215 MS.gene36409:CDS 35.0%
TTCTACCAGACAAATATTGC+AGG + chr2.2:2874134-2874153 MS.gene36409:CDS 35.0%
TTGTCCAAATAAGACTGGTA+GGG + chr2.2:2872656-2872675 MS.gene36409:intron 35.0%
TTTCAATCCTAAGATGGTTC+TGG + chr2.2:2873501-2873520 MS.gene36409:CDS 35.0%
TTTGTCCAAATAAGACTGGT+AGG + chr2.2:2872655-2872674 MS.gene36409:intron 35.0%
! AGTTTTCAGAGTTCGAACTT+TGG + chr2.2:2872769-2872788 MS.gene36409:intron 35.0%
! ATATGGCTTGATCATGGTTT+TGG - chr2.2:2875224-2875243 None:intergenic 35.0%
! ATTGGAAAGTGCAAGTATAC+CGG + chr2.2:2874354-2874373 MS.gene36409:CDS 35.0%
! ATTGTTTGAAACACTTGCTG+AGG + chr2.2:2874094-2874113 MS.gene36409:CDS 35.0%
! ATTTTCCATTAGTAGAGGGA+AGG - chr2.2:2873197-2873216 None:intergenic 35.0%
! CACACTGAATCTGAAATGTT+TGG - chr2.2:2873063-2873082 None:intergenic 35.0%
! GATACAAAAGCTCTAGTGAA+AGG + chr2.2:2875815-2875834 MS.gene36409:CDS 35.0%
! TGTTTTCAGTGTAATGGTGA+TGG - chr2.2:2873104-2873123 None:intergenic 35.0%
! TTCACTAGAGCTTTTGTATC+AGG - chr2.2:2875815-2875834 None:intergenic 35.0%
!! CAACCTCCTTTTGATAATTG+TGG + chr2.2:2873400-2873419 MS.gene36409:CDS 35.0%
!! CTGTTAGCTTTCTAAACAGT+TGG - chr2.2:2874403-2874422 None:intergenic 35.0%
!! GAAATTATGAGCTTTTTGGG+TGG + chr2.2:2874029-2874048 MS.gene36409:CDS 35.0%
!!! AGATTTTCTAAGGTGTTTGC+AGG - chr2.2:2874296-2874315 None:intergenic 35.0%
!!! GATTTTCTAAGGTGTTTGCA+GGG - chr2.2:2874295-2874314 None:intergenic 35.0%
AAAGAAAGCAGAAGAAGGAG+TGG + chr2.2:2873785-2873804 MS.gene36409:CDS 40.0%
AAGCTTACGTCGAAGCAATA+AGG + chr2.2:2874441-2874460 MS.gene36409:CDS 40.0%
AAGGGAAATGAAGGAGAGTA+GGG - chr2.2:2872504-2872523 None:intergenic 40.0%
AATCAAGGCACAACAGTTGA+AGG + chr2.2:2873150-2873169 MS.gene36409:CDS 40.0%
AATCATACCTATCACGAGCT+TGG - chr2.2:2874906-2874925 None:intergenic 40.0%
ACATCCTCCCATAACTTTCT+AGG - chr2.2:2873430-2873449 None:intergenic 40.0%
ACCTTGAGTGCAATCTCAAT+AGG - chr2.2:2874563-2874582 None:intergenic 40.0%
AGTCTACAAATTTCGTGAGC+GGG - chr2.2:2874980-2874999 None:intergenic 40.0%
AGTTCCTAGAAAGTTATGGG+AGG + chr2.2:2873423-2873442 MS.gene36409:CDS 40.0%
ATCTTAGTATCAGCTCGGTT+TGG + chr2.2:2873613-2873632 MS.gene36409:intron 40.0%
ATGGTTCAAGCCAGCAAATT+TGG + chr2.2:2873255-2873274 MS.gene36409:CDS 40.0%
ATTGACAGAGTTAGGAGCTT+TGG - chr2.2:2874003-2874022 None:intergenic 40.0%
CAACAAGCACTTCTATGGAA+AGG + chr2.2:2874330-2874349 MS.gene36409:CDS 40.0%
CAACTCCATCTTGATGAAAC+TGG - chr2.2:2875532-2875551 None:intergenic 40.0%
CAACTTGGTTCCAAATTTGC+TGG - chr2.2:2873268-2873287 None:intergenic 40.0%
CACAAGAAAGTGAACGTGTT+TGG + chr2.2:2873035-2873054 MS.gene36409:CDS 40.0%
CCAACACAAGGATCGTATTA+AGG - chr2.2:2873696-2873715 None:intergenic 40.0%
CCTTAATACGATCCTTGTGT+TGG + chr2.2:2873693-2873712 MS.gene36409:intron 40.0%
CCTTGCAAATAGGGAAAAGA+AGG + chr2.2:2874787-2874806 MS.gene36409:CDS 40.0%
CGAGTAAGGGACCAAATAAT+TGG + chr2.2:2875151-2875170 MS.gene36409:intron 40.0%
CTACCAGACAAATATTGCAG+GGG + chr2.2:2874136-2874155 MS.gene36409:CDS 40.0%
CTATCATGGGGTAAGTTACT+AGG - chr2.2:2875742-2875761 None:intergenic 40.0%
CTCACATTGAAGGGAAATGA+AGG - chr2.2:2872513-2872532 None:intergenic 40.0%
CTCTTCCTGATACTCAATAC+TGG + chr2.2:2874840-2874859 MS.gene36409:CDS 40.0%
GATACTAAGATTCGTTGCAC+CGG - chr2.2:2873604-2873623 None:intergenic 40.0%
GATGATGAGCGAAGATTGTA+GGG - chr2.2:2873959-2873978 None:intergenic 40.0%
GCACTTCTATGGAAAGGAAT+TGG + chr2.2:2874336-2874355 MS.gene36409:CDS 40.0%
GCTCATTCATGGAACAATTG+AGG + chr2.2:2872458-2872477 MS.gene36409:CDS 40.0%
GGAAGATCTAACTAATGGTG+AGG + chr2.2:2875781-2875800 MS.gene36409:CDS 40.0%
GGAGAAGCAATCATAGAAAG+TGG + chr2.2:2874725-2874744 MS.gene36409:CDS 40.0%
GGCTGTAAGGGTTATGATTT+GGG + chr2.2:2873806-2873825 MS.gene36409:CDS 40.0%
GTGAATGTCACCTTTGCTTA+TGG - chr2.2:2875561-2875580 None:intergenic 40.0%
GTGGAGTTCCTAGAAAGTTA+TGG + chr2.2:2873419-2873438 MS.gene36409:CDS 40.0%
GTTGATCATCCCATAAGCAA+AGG + chr2.2:2875548-2875567 MS.gene36409:CDS 40.0%
TAGTTCAAGAAAATCGAGCC+TGG - chr2.2:2873660-2873679 None:intergenic 40.0%
TATTGAGATTGCACTCAAGG+TGG + chr2.2:2874562-2874581 MS.gene36409:CDS 40.0%
TCAAAAGGAGGTTGGAAAGT+AGG - chr2.2:2873394-2873413 None:intergenic 40.0%
TCAACTGTTGTGCCTTGATT+TGG - chr2.2:2873150-2873169 None:intergenic 40.0%
TCAATGTGGTATGAACACAC+TGG + chr2.2:2875593-2875612 MS.gene36409:CDS 40.0%
TCCTATTGAGATTGCACTCA+AGG + chr2.2:2874559-2874578 MS.gene36409:CDS 40.0%
TCTCTGTCATTGACAGAGTT+AGG - chr2.2:2874011-2874030 None:intergenic 40.0%
TGGCAGAAAGATAAGAACAG+TGG + chr2.2:2874521-2874540 MS.gene36409:CDS 40.0%
TGGCTGTAAGGGTTATGATT+TGG + chr2.2:2873805-2873824 MS.gene36409:CDS 40.0%
TGTCCAAATAAGACTGGTAG+GGG + chr2.2:2872657-2872676 MS.gene36409:intron 40.0%
TTCCTCAACAAGCACTTCTA+TGG + chr2.2:2874325-2874344 MS.gene36409:CDS 40.0%
TTCTTGAACTAGACCATGAG+CGG + chr2.2:2873669-2873688 MS.gene36409:intron 40.0%
TTGGATGATTCTACATCAGC+AGG - chr2.2:2875054-2875073 None:intergenic 40.0%
TTGTACACAAAAGTGGGACA+TGG + chr2.2:2875001-2875020 MS.gene36409:intron 40.0%
! CAGCAAATTTGGAACCAAGT+TGG + chr2.2:2873266-2873285 MS.gene36409:CDS 40.0%
! CAGTATTGAGTATCAGGAAG+AGG - chr2.2:2874842-2874861 None:intergenic 40.0%
! CCTTCTTTTCCCTATTTGCA+AGG - chr2.2:2874790-2874809 None:intergenic 40.0%
! CTGGTCTTTCAATCCTAAGA+TGG + chr2.2:2873495-2873514 MS.gene36409:CDS 40.0%
! GAAGTGCTTGTTGAGGAAAT+AGG - chr2.2:2874323-2874342 None:intergenic 40.0%
! TCTTGAACTGGTTCACTTTC+AGG - chr2.2:2874656-2874675 None:intergenic 40.0%
! TGATGATGAGCGAAGATTGT+AGG - chr2.2:2873960-2873979 None:intergenic 40.0%
! TTGGTCCCTTACTCGTATTT+TGG - chr2.2:2875146-2875165 None:intergenic 40.0%
!! CTTAGTAGCTTTGTCCAACT+TGG - chr2.2:2873283-2873302 None:intergenic 40.0%
!! TTCCATAGAAGTGCTTGTTG+AGG - chr2.2:2874330-2874349 None:intergenic 40.0%
AAGTAATCTCTCGGATGTCC+TGG - chr2.2:2874755-2874774 None:intergenic 45.0%
AGAAGAAGGAGTGGCTGTAA+GGG + chr2.2:2873794-2873813 MS.gene36409:CDS 45.0%
AGGGACACAGAAATTGCGAT+CGG + chr2.2:2875500-2875519 MS.gene36409:CDS 45.0%
ATCATAGAAAGTGGTGAGCC+AGG + chr2.2:2874734-2874753 MS.gene36409:CDS 45.0%
ATCGTATTAAGGACCGCTCA+TGG - chr2.2:2873685-2873704 None:intergenic 45.0%
CTGAGACATGATCAATCGAC+CGG - chr2.2:2874376-2874395 None:intergenic 45.0%
GAAGGGAAATGAAGGAGAGT+AGG - chr2.2:2872505-2872524 None:intergenic 45.0%
GAATCATTAGCGATTCAGCC+AGG + chr2.2:2873639-2873658 MS.gene36409:intron 45.0%
GAGGTTGGAAAGTAGGTGAA+TGG - chr2.2:2873387-2873406 None:intergenic 45.0%
GATGCTCATGCTTGTGTTAC+TGG + chr2.2:2874197-2874216 MS.gene36409:CDS 45.0%
GCATGTGGGATTTCTGTTTG+AGG - chr2.2:2873735-2873754 None:intergenic 45.0%
GGCACCCTCCAATGAAATAT+TGG - chr2.2:2874496-2874515 None:intergenic 45.0%
GGCTACCAGTTTCATCAAGA+TGG + chr2.2:2875524-2875543 MS.gene36409:CDS 45.0%
GGGATGCTACATTTCCACAA+AGG + chr2.2:2873326-2873345 MS.gene36409:CDS 45.0%
GGTGGTTTAGATTTGTGCGA+CGG + chr2.2:2874047-2874066 MS.gene36409:CDS 45.0%
GTATCAGGAAGAGGAGAATG+TGG - chr2.2:2874833-2874852 None:intergenic 45.0%
GTGAACCAAAGATCGATGGA+CGG + chr2.2:2875473-2875492 MS.gene36409:CDS 45.0%
GTGCAGAGAATGTGCTCAAT+AGG + chr2.2:2875659-2875678 MS.gene36409:CDS 45.0%
TAGCCCCTGCAATATTTGTC+TGG - chr2.2:2874142-2874161 None:intergenic 45.0%
TGAACCAAAGATCGATGGAC+GGG + chr2.2:2875474-2875493 MS.gene36409:CDS 45.0%
TGAAGAGTTTCAAGGGCTGA+GGG + chr2.2:2873306-2873325 MS.gene36409:CDS 45.0%
TGGATCCTTCCCTCTACTAA+TGG + chr2.2:2873189-2873208 MS.gene36409:CDS 45.0%
TGTGATGAACACACATGACG+AGG + chr2.2:2873866-2873885 MS.gene36409:CDS 45.0%
TTGCTTCGACGTAAGCTTCA+TGG - chr2.2:2874439-2874458 None:intergenic 45.0%
! AGCTTTGGTATCCACGGTTA+TGG - chr2.2:2873988-2874007 None:intergenic 45.0%
! GCACTCCAGTATTGAGTATC+AGG - chr2.2:2874848-2874867 None:intergenic 45.0%
! GTTAGGAGCTTTGGTATCCA+CGG - chr2.2:2873994-2874013 None:intergenic 45.0%
! GTTTTTGTTCCTTGCACCAG+TGG + chr2.2:2875418-2875437 MS.gene36409:intron 45.0%
! TCTGAAACAGACAGCTCAGT+TGG - chr2.2:2872832-2872851 None:intergenic 45.0%
!! AGTCCCCTACCAGTCTTATT+TGG - chr2.2:2872663-2872682 None:intergenic 45.0%
!!! AGGTTTTGAAACCACTGAGC+CGG + chr2.2:2873582-2873601 MS.gene36409:intron 45.0%
AAAGATCGATGGACGGGCAA+AGG + chr2.2:2875480-2875499 MS.gene36409:CDS 50.0%
AAGATCGATGGACGGGCAAA+GGG + chr2.2:2875481-2875500 MS.gene36409:CDS 50.0%
ATAGGTCATCCACTGGTGCA+AGG - chr2.2:2875430-2875449 None:intergenic 50.0%
CAAGCATGAGCATCATGCCA+TGG - chr2.2:2874191-2874210 None:intergenic 50.0%
CAGAAGAAGGAGTGGCTGTA+AGG + chr2.2:2873793-2873812 MS.gene36409:CDS 50.0%
CTAACCTGCACACCAACACA+AGG - chr2.2:2873708-2873727 None:intergenic 50.0%
CTCTTGGACCTCCTTTGTTG+AGG - chr2.2:2874166-2874185 None:intergenic 50.0%
GACACAGAAATTGCGATCGG+AGG + chr2.2:2875503-2875522 MS.gene36409:CDS 50.0%
GTCATACCAATGTGGCCAGA+AGG + chr2.2:2874626-2874645 MS.gene36409:CDS 50.0%
GTGAAGAGTTTCAAGGGCTG+AGG + chr2.2:2873305-2873324 MS.gene36409:CDS 50.0%
GTTCACTCCAAGCTCGTGAT+AGG + chr2.2:2874896-2874915 MS.gene36409:CDS 50.0%
TCACTTTCAGGCACTCCTTC+TGG - chr2.2:2874644-2874663 None:intergenic 50.0%
TCAGGAAGAGGAGAATGTGG+TGG - chr2.2:2874830-2874849 None:intergenic 50.0%
TTTGCCCGTCCATCGATCTT+TGG - chr2.2:2875481-2875500 None:intergenic 50.0%
! AAGCAATAAGGCGTGCCGAT+AGG + chr2.2:2874453-2874472 MS.gene36409:CDS 50.0%
! TCATGCTTGTGTTACTGGCG+AGG + chr2.2:2874202-2874221 MS.gene36409:CDS 50.0%
!! TCATTGGAGGGTGCCATTTG+TGG + chr2.2:2874501-2874520 MS.gene36409:CDS 50.0%
AAGGAGGTCCAAGAGAGCCA+TGG + chr2.2:2874171-2874190 MS.gene36409:CDS 55.0%
GCATCATGCCATGGCTCTCT+TGG - chr2.2:2874182-2874201 None:intergenic 55.0%
! CGATCCTTGTGTTGGTGTGC+AGG + chr2.2:2873701-2873720 MS.gene36409:intron 55.0%
! TGCTTGTGTTACTGGCGAGG+CGG + chr2.2:2874205-2874224 MS.gene36409:CDS 55.0%
GGCACTCCTTCTGGCCACAT+TGG - chr2.2:2874635-2874654 None:intergenic 60.0%
TGTTACTGGCGAGGCGGCTT+GGG + chr2.2:2874211-2874230 MS.gene36409:CDS 60.0%
!! GATTCGTTGCACCGGCTCAG+TGG - chr2.2:2873596-2873615 None:intergenic 60.0%
!! GCAGGGGCTAGCCTCAACAA+AGG + chr2.2:2874152-2874171 MS.gene36409:CDS 60.0%
!! GGGGCTAGCCTCAACAAAGG+AGG + chr2.2:2874155-2874174 MS.gene36409:CDS 60.0%
! GTGTTACTGGCGAGGCGGCT+TGG + chr2.2:2874210-2874229 MS.gene36409:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2872450 2875877 2872450 ID=MS.gene36409
chr2.2 mRNA 2872450 2875877 2872450 ID=MS.gene36409.t1;Parent=MS.gene36409
chr2.2 exon 2872450 2872527 2872450 ID=MS.gene36409.t1.exon1;Parent=MS.gene36409.t1
chr2.2 CDS 2872450 2872527 2872450 ID=cds.MS.gene36409.t1;Parent=MS.gene36409.t1
chr2.2 exon 2872965 2873522 2872965 ID=MS.gene36409.t1.exon2;Parent=MS.gene36409.t1
chr2.2 CDS 2872965 2873522 2872965 ID=cds.MS.gene36409.t1;Parent=MS.gene36409.t1
chr2.2 exon 2873723 2874917 2873723 ID=MS.gene36409.t1.exon3;Parent=MS.gene36409.t1
chr2.2 CDS 2873723 2874917 2873723 ID=cds.MS.gene36409.t1;Parent=MS.gene36409.t1
chr2.2 exon 2875438 2875877 2875438 ID=MS.gene36409.t1.exon4;Parent=MS.gene36409.t1
chr2.2 CDS 2875438 2875877 2875438 ID=cds.MS.gene36409.t1;Parent=MS.gene36409.t1
Gene Sequence

>MS.gene36409

ATGGATAAGCTCATTCATGGAACAATTGAGGCTACTGTCTTCAATGCAACTCCCTACTCTCCTTCATTTCCCTTCAATGTGAGCTCTAATGAACTCTTAAGATTAAATATATTATGATCCCTATAATATTGACAAAATTTGATCCTTCTCTTTATTTTTTTTTATTCCTCTATAGTCATACTTGTAACAATATTTTGTTTTGTTTTTTGTCCAAATAAGACTGGTAGGGGACTAAAAAGTAAAAATACACAACTTTATTAAATCTATGAAATGAAAATAATTTTTTTTATTGTTTATTGATTGTTTATTGATAAATGTTAGTTTTCAGAGTTCGAACTTTGGACCTCCTGTTATTATTTCTTCAATGTCTCTTAGCTCACCAACTGAGCTGTCTGTTTCAGACTTAAATAAATAATTTGTTTATAGAGTTAAACTAAGCTTTGTCAATTTTATAGAAACCAACTACATATTCTATAATGTGAACTCATAAAATATGTCAATTTTTGTGTTTTCAGTGTTTATTTGTAAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAATAAGAAAGTGGCAAAAACAACACAAGAAAGTGAACGTGTTTGGAACCAAACATTTCAGATTCAGTGTGCTCATCTAGCTGATTCAACCATCACCATTACACTGAAAACAACATGTACCATATTAGGAAAATTCCAAATCAAGGCACAACAGTTGAAGGAAGACAGTTTGATCAATGGATCCTTCCCTCTACTAATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAGCCAGCAAATTTGGAACCAAGTTGGACAAAGCTACTAAGTAGTGAAGAGTTTCAAGGGCTGAGGGATGCTACATTTCCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCACCATTCACCTACTTTCCAACCTCCTTTTGATAATTGTGGAGTTCCTAGAAAGTTATGGGAGGATGTTTATAAAGCTATTGAGGGTGCAAAATATTTAGTATATATTGCAGGCTGGTCTTTCAATCCTAAGATGGTTCTGGTACATATATAATCTCATTTCATACTCTACATTTTATATTGATATACATTTTTTTGGTTAGGTTTTGAAACCACTGAGCCGGTGCAACGAATCTTAGTATCAGCTCGGTTTGGAACGAATCATTAGCGATTCAGCCAGGCTCGATTTTCTTGAACTAGACCATGAGCGGTCCTTAATACGATCCTTGTGTTGGTGTGCAGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAATAAAGTTGGGCGAGCTATTGAAAAAGAAAGCAGAAGAAGGAGTGGCTGTAAGGGTTATGATTTGGGATGATGAAACCTCATTTCCATTTATCAAGAACAAAGGTGTGATGAACACACATGACGAGGAAGCTTTTGCATACTTTAAACACACAAAAGTAGTATGCAGAAGGTGTCCTAGATTACATGACAAATTCCCTACAATCTTCGCTCATCATCAAAAAACCATAACCGTGGATACCAAAGCTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGCGACGGTCGATATGATACCGAGAAACATTCATTGTTTGAAACACTTGCTGAGGAATCACATTACCATGATTTCTACCAGACAAATATTGCAGGGGCTAGCCTCAACAAAGGAGGTCCAAGAGAGCCATGGCATGATGCTCATGCTTGTGTTACTGGCGAGGCGGCTTGGGATGTGTTAGCTAATTTTGAACAAAGATGGACAAAGCAATGTGATTCATCTCTTCTAGTCCCTGCAAACACCTTAGAAAATCTCATTCCTATTTCCTCAACAAGCACTTCTATGGAAAGGAATTGGAAAGTGCAAGTATACCGGTCGATTGATCATGTCTCAGCTAGCCAACTGTTTAGAAAGCTAACAGTTGAGAGTAGTATCCATGAAGCTTACGTCGAAGCAATAAGGCGTGCCGATAGGTTTGTGTACATTGAAAACCAATATTTCATTGGAGGGTGCCATTTGTGGCAGAAAGATAAGAACAGTGGATGCACAAATTTGATTCCTATTGAGATTGCACTCAAGGTGGTCAACAAGATTAAAGCAAGAGAAAGGTTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATCATAGAAAGTGGTGAGCCAGGACATCCGAGAGATTACTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAGGAATATCTTCCACCACATTCTCCTCTTCCTGATACTCAATACTGGAGTGCACAGAAAAATAGAAGATTCATGGTTTATGTTCACTCCAAGCTCGTGATAGGTATGATTAAACCATAAATATATGTTGGTTTAATTGCAGTTTTGGTCATCATATTTTCACCCGCTCACGAAATTTGTAGACTTTTGTACACAAAAGTGGGACATGGCAAATTTTCTATTGACGTGTCATAAAACCTGCTGATGTAGAATCATCCAAGTGAATTTATAATACATAGGTTTCTATGCCACGTCAATAAAAAAAAATTGTCATGTTATCACTTTAGATCCAAAATACGAGTAAGGGACCAAATAATTGGATTTTAAAAGGAGGGATCGATTTCGTAAGCGAGAGAAAATAAGAAGACCAAAACCATGATCAAGCCATATATATATGTTCAACAACTAACTACTGTCACTATGTATGTTATTTTTAGCTATTCAACCTTTCCAATACAAAAACTTAATAGGAGTGATTTTTTACAATTAAATTCATTGCAATAACTCATTTTAGAAAGAAGAGAAAACACCATTCATGATCTTGGTTTAACTAAAATGTGTTTTGTTTTTGTTCCTTGCACCAGTGGATGACCTATATATACTAATAGGATCAGCAAATGTGAACCAAAGATCGATGGACGGGCAAAGGGACACAGAAATTGCGATCGGAGGCTACCAGTTTCATCAAGATGGAGTTGATCATCCCATAAGCAAAGGTGACATTCACGAATACAGAATGTCAATGTGGTATGAACACACTGGTAGTGCTGAGAAGTTGTTTTTAGAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGCTCAATAGGAGATAAAATGTGGAAAATCTACAGCAGTGAAGAAATTATGGACATGGAGGGTGTGCACCTAGTAACTTACCCCATGATAGTAACACAAAATGGATCTGTGGAAGATCTAACTAATGGTGAGGATCATTTTCCTGATACAAAAGCTCTAGTGAAAGGAACAAGATCAAAATTATTACCCTCTGTCATTACCACTTAG
Protein sequence

>MS.gene36409.t1

MDKLIHGTIEATVFNATPYSPSFPFNCLFVNGKPAYVTIKIDNKKVAKTTQESERVWNQTFQIQCAHLADSTITITLKTTCTILGKFQIKAQQLKEDSLINGSFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEFQGLRDATFPQRSNCHVKLYHDAHHSPTFQPPFDNCGVPRKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSFPFIKNKGVMNTHDEEAFAYFKHTKVVCRRCPRLHDKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFETLAEESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLANFEQRWTKQCDSSLLVPANTLENLIPISSTSTSMERNWKVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDKNSGCTNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKENEEYLPPHSPLPDTQYWSAQKNRRFMVYVHSKLVIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQFHQDGVDHPISKGDIHEYRMSMWYEHTGSAEKLFLEPESLECVQRMCSIGDKMWKIYSSEEIMDMEGVHLVTYPMIVTQNGSVEDLTNGEDHFPDTKALVKGTRSKLLPSVITT