AlfalfaGEDB | MS.gene37023

M. sativa cultivar XinJiangDaYe / MS.gene37023

KEGG: K02979
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01200.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37023.t1	ABD32519.1	96.9	64	2	0	1	64	9	72	2.70E-24	120.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37023.t1	Q9SR73	81.2	64	12	0	1	64	1	64	2.4e-21	102.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37023.t1	G7KLE8	96.9	64	2	0	1	64	38	101	2.0e-24	120.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene37023	0.801519	8.66E-49	-1.69E-46
MS.gene049341	MS.gene37023	0.802166	6.38E-49	-1.69E-46
MS.gene049821	MS.gene37023	0.826935	2.06E-54	-1.69E-46
MS.gene050807	MS.gene37023	0.802084	6.64E-49	-1.69E-46
MS.gene050815	MS.gene37023	0.824885	6.33E-54	-1.69E-46
MS.gene050838	MS.gene37023	0.818189	2.23E-52	-1.69E-46
MS.gene051243	MS.gene37023	0.817681	2.91E-52	-1.69E-46
MS.gene051328	MS.gene37023	0.868401	6.71E-66	-1.69E-46
MS.gene05134	MS.gene37023	0.800111	1.68E-48	-1.69E-46
MS.gene051577	MS.gene37023	0.81571	8.04E-52	-1.69E-46
MS.gene052133	MS.gene37023	0.80713	5.87E-50	-1.69E-46
MS.gene052516	MS.gene37023	0.804928	1.71E-49	-1.69E-46
MS.gene052947	MS.gene37023	0.842891	1.96E-58	-1.69E-46
MS.gene053008	MS.gene37023	0.837496	5.02E-57	-1.69E-46
MS.gene055466	MS.gene37023	0.806898	6.58E-50	-1.69E-46
MS.gene055468	MS.gene37023	0.822557	2.22E-53	-1.69E-46
MS.gene056580	MS.gene37023	0.816182	6.31E-52	-1.69E-46
MS.gene057057	MS.gene37023	0.836221	1.06E-56	-1.69E-46
MS.gene057234	MS.gene37023	0.802682	5.00E-49	-1.69E-46
MS.gene057287	MS.gene37023	0.802317	5.94E-49	-1.69E-46
MS.gene057705	MS.gene37023	0.805264	1.45E-49	-1.69E-46
MS.gene058054	MS.gene37023	0.809474	1.86E-50	-1.69E-46
MS.gene058055	MS.gene37023	0.809363	1.96E-50	-1.69E-46
MS.gene058084	MS.gene37023	0.800669	1.29E-48	-1.69E-46
MS.gene058646	MS.gene37023	0.818025	2.43E-52	-1.69E-46
MS.gene058906	MS.gene37023	0.803698	3.08E-49	-1.69E-46
MS.gene060429	MS.gene37023	0.818699	1.71E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37023.t1	MTR_6g013410	96.875	64	2	0	1	64	38	101	3.51e-39	124
MS.gene37023.t1	MTR_6g013210	83.077	65	10	1	1	64	1	65	4.08e-31	103
MS.gene37023.t1	MTR_4g081180	76.923	65	14	1	1	64	150	214	4.73e-27	97.4
MS.gene37023.t1	MTR_8g089765	71.429	49	13	1	1	48	1	49	1.12e-17	70.5

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37023.t1	AT5G03850	81.250	64	12	1	64	1	64	8.10e-32	105
MS.gene37023.t1	AT3G10090	81.250	64	12	1	64	1	64	8.10e-32	105
MS.gene37023.t1	AT5G64140	79.688	64	13	1	64	1	64	1.99e-31	103

Find 16 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGTCATCTCCTTCTCTAAT+GGG	0.330219	8.3:-76672240	None:intergenic
AATGTCATCTCCTTCTCTAA+TGG	0.406581	8.3:-76672241	None:intergenic
CGCTCAAGTTGAGAAAGTTA+TGG	0.416411	8.3:+76672131	MS.gene37023:CDS
AACCTGAGTGACCTGTCCTC+TGG	0.457012	8.3:-76672166	None:intergenic
GCTCAAGTTGAGAAAGTTAT+GGG	0.472061	8.3:+76672132	MS.gene37023:CDS
GAGAAAGTTATGGGTCGTAC+TGG	0.491245	8.3:+76672141	MS.gene37023:CDS
CTTCTCTCTCAGACTCAAGT+AGG	0.493446	8.3:-76672266	None:intergenic
TGTCATCTCCTTCTCTAATG+GGG	0.597877	8.3:-76672239	None:intergenic
TCGTACTGGATCCAGAGGAC+AGG	0.601747	8.3:+76672155	MS.gene37023:CDS
ATCCAGAGGACAGGTCACTC+AGG	0.602839	8.3:+76672164	MS.gene37023:CDS
ATGAGAATCGCTACATCATG+AGG	0.604858	8.3:+76672205	MS.gene37023:CDS
GTGAAGGGCCCCATTAGAGA+AGG	0.605680	8.3:+76672231	MS.gene37023:CDS
TTCTCTCTCAGACTCAAGTA+GGG	0.606054	8.3:-76672265	None:intergenic
CTACATCATGAGGAATGTGA+AGG	0.633338	8.3:+76672215	MS.gene37023:CDS
TACATCATGAGGAATGTGAA+GGG	0.640443	8.3:+76672216	MS.gene37023:CDS
ATGGGTCGTACTGGATCCAG+AGG	0.663896	8.3:+76672150	MS.gene37023:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AATGTCATCTCCTTCTCTAA+TGG	-	chr8.3:76672244-76672263	None:intergenic	35.0%
	ATGTCATCTCCTTCTCTAAT+GGG	-	chr8.3:76672243-76672262	None:intergenic	35.0%
	TACATCATGAGGAATGTGAA+GGG	+	chr8.3:76672216-76672235	MS.gene37023:CDS	35.0%
!!	GCTCAAGTTGAGAAAGTTAT+GGG	+	chr8.3:76672132-76672151	MS.gene37023:CDS	35.0%
	ATGAGAATCGCTACATCATG+AGG	+	chr8.3:76672205-76672224	MS.gene37023:CDS	40.0%
	CTACATCATGAGGAATGTGA+AGG	+	chr8.3:76672215-76672234	MS.gene37023:CDS	40.0%
	TGTCATCTCCTTCTCTAATG+GGG	-	chr8.3:76672242-76672261	None:intergenic	40.0%
	TTCTCTCTCAGACTCAAGTA+GGG	-	chr8.3:76672268-76672287	None:intergenic	40.0%
!!	CGCTCAAGTTGAGAAAGTTA+TGG	+	chr8.3:76672131-76672150	MS.gene37023:CDS	40.0%
	CTTCTCTCTCAGACTCAAGT+AGG	-	chr8.3:76672269-76672288	None:intergenic	45.0%
	GAGAAAGTTATGGGTCGTAC+TGG	+	chr8.3:76672141-76672160	MS.gene37023:CDS	45.0%
	AACCTGAGTGACCTGTCCTC+TGG	-	chr8.3:76672169-76672188	None:intergenic	55.0%
	ATCCAGAGGACAGGTCACTC+AGG	+	chr8.3:76672164-76672183	MS.gene37023:CDS	55.0%
	ATGGGTCGTACTGGATCCAG+AGG	+	chr8.3:76672150-76672169	MS.gene37023:CDS	55.0%
	GTGAAGGGCCCCATTAGAGA+AGG	+	chr8.3:76672231-76672250	MS.gene37023:CDS	55.0%
	TCGTACTGGATCCAGAGGAC+AGG	+	chr8.3:76672155-76672174	MS.gene37023:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	76672111	76672305	76672111	ID=MS.gene37023
chr8.3	mRNA	76672111	76672305	76672111	ID=MS.gene37023.t1;Parent=MS.gene37023
chr8.3	exon	76672111	76672305	76672111	ID=MS.gene37023.t1.exon1;Parent=MS.gene37023.t1
chr8.3	CDS	76672111	76672305	76672111	ID=cds.MS.gene37023.t1;Parent=MS.gene37023.t1

Gene Sequence	>MS.gene37023 ATGGAATCACAGATTAAGCACGCTCAAGTTGAGAAAGTTATGGGTCGTACTGGATCCAGAGGACAGGTCACTCAGGTTAGAGTCAAGATTCTGCATGAGAATCGCTACATCATGAGGAATGTGAAGGGCCCCATTAGAGAAGGAGATGACATTGCCCTACTTGAGTCTGAGAGAGAAGCAAGAAGACTCCGATAG
Protein sequence	>MS.gene37023.t1 MESQIKHAQVEKVMGRTGSRGQVTQVRVKILHENRYIMRNVKGPIREGDDIALLESEREARRLR