Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37071.t1 | XP_013467661.1 | 98 | 342 | 7 | 0 | 1 | 342 | 1 | 342 | 5.10E-186 | 660.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37071.t1 | A0A072VJS3 | 98.0 | 342 | 7 | 0 | 1 | 342 | 1 | 342 | 3.7e-186 | 660.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene37071 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene37071 | 0.805086 | 1.58E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene37071 | 0.82336 | 1.44E-53 | -1.69E-46 |
| MS.gene050237 | MS.gene37071 | 0.800258 | 1.57E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene37071 | 0.811253 | 7.68E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene37071 | 0.80603 | 1.00E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene37071 | 0.801466 | 8.89E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene37071 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene37071 | 0.813347 | 2.68E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene37071 | 0.816698 | 4.84E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene37071 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene37071 | 0.804563 | 2.03E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene37071 | 0.815645 | 8.31E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene37071 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene37071 | 0.804223 | 2.40E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene37071 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene37071 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene37071 | 0.818697 | 1.71E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene37071 | 0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene37071 | 0.82173 | 3.46E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene37071 | 0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene057932 | MS.gene37071 | 0.818289 | 2.12E-52 | -1.69E-46 |
| MS.gene058548 | MS.gene37071 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene37071 | 0.823397 | 1.42E-53 | -1.69E-46 |
| MS.gene05979 | MS.gene37071 | 0.812061 | 5.12E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene37071 | -0.845905 | 3.03E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37071.t1 | MTR_1g053910 | 97.953 | 342 | 7 | 0 | 1 | 342 | 1 | 342 | 0.0 | 676 |
| MS.gene37071.t1 | MTR_5g014110 | 30.769 | 338 | 199 | 12 | 1 | 309 | 1 | 332 | 5.54e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37071.t1 | AT3G57990 | 49.870 | 385 | 126 | 13 | 1 | 337 | 1 | 366 | 8.12e-101 | 301 |
Find 98 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGACTAGGGTTCCAATT+AGG | 0.185613 | 1.4:+39776723 | MS.gene37071:CDS |
| GGGTACTTTGGCTCTTAATA+AGG | 0.214485 | 1.4:-39776213 | None:intergenic |
| TTTCTTGTGATGGATAAAAT+TGG | 0.227367 | 1.4:+39776827 | MS.gene37071:CDS |
| TCCGCAAAACGGTGGCGTTT+TGG | 0.257586 | 1.4:+39776583 | MS.gene37071:CDS |
| ACCGCAGCACGTCCCCTAAT+TGG | 0.257594 | 1.4:-39776737 | None:intergenic |
| CTGAGGTTGCGGCGAGGACT+AGG | 0.264777 | 1.4:+39776711 | MS.gene37071:CDS |
| GAGGACTAGGGTTCCAATTA+GGG | 0.304424 | 1.4:+39776724 | MS.gene37071:CDS |
| AAAGTACCCTTAAGTATTCT+AGG | 0.304763 | 1.4:+39776227 | MS.gene37071:CDS |
| AATTGGGGTGGAACATTTAC+CGG | 0.340408 | 1.4:+39776844 | MS.gene37071:CDS |
| GTTAAAGGCGAAAGCGCGTT+TGG | 0.350617 | 1.4:+39776794 | MS.gene37071:CDS |
| AGGGTTCCGGCTGAGGTTAA+AGG | 0.375140 | 1.4:+39776779 | MS.gene37071:CDS |
| GGTACTTTGGCTCTTAATAA+GGG | 0.376042 | 1.4:-39776212 | None:intergenic |
| GCGAGTTCAATTTGCTGAAC+CGG | 0.376874 | 1.4:+39776444 | MS.gene37071:CDS |
| TGGTGTTCCTAGAATACTTA+AGG | 0.385759 | 1.4:-39776234 | None:intergenic |
| GTTGGGAAGGTACCGTCGGC+GGG | 0.393671 | 1.4:+39776662 | MS.gene37071:CDS |
| GGCTGATGCGAGTAAGGAAT+TGG | 0.406541 | 1.4:+39777141 | MS.gene37071:CDS |
| TAGAATACTTAAGGGTACTT+TGG | 0.408843 | 1.4:-39776225 | None:intergenic |
| TTCTTGTGATGGATAAAATT+GGG | 0.414253 | 1.4:+39776828 | MS.gene37071:CDS |
| CTCTCAACTTTCTTCCAATC+CGG | 0.423351 | 1.4:+39776305 | MS.gene37071:CDS |
| TTTGTTGAATCTCCGGTGAT+TGG | 0.435435 | 1.4:+39776629 | MS.gene37071:CDS |
| GGAATTGGAGAAGGCGTTGA+GGG | 0.440978 | 1.4:+39777156 | MS.gene37071:CDS |
| AGAAAGAATGAGAAGAAAAC+CGG | 0.442575 | 1.4:+39777082 | MS.gene37071:CDS |
| ATTTGAGTTTGTTGAATCTC+CGG | 0.443909 | 1.4:+39776622 | MS.gene37071:CDS |
| GGAGAGAATTCGCTAGTGTA+AGG | 0.447654 | 1.4:+39777032 | MS.gene37071:CDS |
| GTGATTGGTGGGTTTAGTGT+TGG | 0.448667 | 1.4:+39776644 | MS.gene37071:CDS |
| GTTTCAACGTTGGACCGGAT+TGG | 0.450991 | 1.4:-39776319 | None:intergenic |
| GACTGAGGCTGATGCGAGTA+AGG | 0.452161 | 1.4:+39777135 | MS.gene37071:CDS |
| GGAATGCTGTGGAGGATCTT+CGG | 0.452683 | 1.4:+39777011 | MS.gene37071:CDS |
| TTGATCGTGAAAACCGGTAC+TGG | 0.460979 | 1.4:+39776380 | MS.gene37071:CDS |
| TTAAAGGCGAAAGCGCGTTT+GGG | 0.463653 | 1.4:+39776795 | MS.gene37071:CDS |
| CTTTCGCCTTTAACCTCAGC+CGG | 0.464620 | 1.4:-39776785 | None:intergenic |
| TGGTGGGTTTAGTGTTGGGA+AGG | 0.466346 | 1.4:+39776649 | MS.gene37071:CDS |
| GGTTATTCGTTTCCGCAAAA+CGG | 0.478591 | 1.4:+39776572 | MS.gene37071:CDS |
| GAGGGTTCCGTTTCTTGTGA+TGG | 0.480532 | 1.4:+39776817 | MS.gene37071:CDS |
| GAAAAGCGGTTGAGGCGAAC+CGG | 0.480787 | 1.4:-39776477 | None:intergenic |
| GATTTGAAGAATTTGAAGAA+AGG | 0.489031 | 1.4:+39776878 | MS.gene37071:CDS |
| TCCAATTAGGGGACGTGCTG+CGG | 0.489203 | 1.4:+39776736 | MS.gene37071:CDS |
| TGATTGGTGGGTTTAGTGTT+GGG | 0.493189 | 1.4:+39776645 | MS.gene37071:CDS |
| AGCGAGTTTCAACGTTGGAC+CGG | 0.495604 | 1.4:-39776324 | None:intergenic |
| TGGGAAGGTACCGTCGGCGG+GGG | 0.498534 | 1.4:+39776664 | MS.gene37071:CDS |
| CTGAACCGGAATGATAAAAC+CGG | 0.502962 | 1.4:+39776458 | MS.gene37071:CDS |
| GAATTCGCTAGTGTAAGGAT+TGG | 0.504292 | 1.4:+39777037 | MS.gene37071:CDS |
| TTGAGGGGAGCCACCACTGT+TGG | 0.513960 | 1.4:+39777172 | MS.gene37071:CDS |
| GGTGTTCCTAGAATACTTAA+GGG | 0.514250 | 1.4:-39776233 | None:intergenic |
| CACCAGCTACGATTCCACTT+TGG | 0.514768 | 1.4:-39776259 | None:intergenic |
| TGAAGCATGAAAAGCGGTTG+AGG | 0.515244 | 1.4:-39776485 | None:intergenic |
| AAGGTTGGTGCTGCTGTAGT+TGG | 0.515358 | 1.4:+39776902 | MS.gene37071:CDS |
| GTTGAATCTCCGGTGATTGG+TGG | 0.516218 | 1.4:+39776632 | MS.gene37071:CDS |
| TGAGGTTGCGGCGAGGACTA+GGG | 0.516942 | 1.4:+39776712 | MS.gene37071:CDS |
| TTCCAAAGTGGAATCGTAGC+TGG | 0.522097 | 1.4:+39776257 | MS.gene37071:CDS |
| GGAGGAGGGAAAAGCTTCGA+GGG | 0.523428 | 1.4:+39777058 | MS.gene37071:CDS |
| GAAGAATTTGAAGAAAGGAA+AGG | 0.533083 | 1.4:+39776883 | MS.gene37071:CDS |
| TGTTGGGAAGGTACCGTCGG+CGG | 0.536822 | 1.4:+39776661 | MS.gene37071:CDS |
| TTCGCTAGTGTAAGGATTGG+AGG | 0.540336 | 1.4:+39777040 | MS.gene37071:CDS |
| TGGAGGAGGGAAAAGCTTCG+AGG | 0.542926 | 1.4:+39777057 | MS.gene37071:CDS |
| AATTTGAAGAAAGGAAAGGT+TGG | 0.544445 | 1.4:+39776887 | MS.gene37071:CDS |
| TTCAAATCTCCACATTCCGC+CGG | 0.554704 | 1.4:-39776863 | None:intergenic |
| TTGAATCTCCGGTGATTGGT+GGG | 0.555286 | 1.4:+39776633 | MS.gene37071:CDS |
| AGGCGAAAGCGCGTTTGGGA+GGG | 0.559583 | 1.4:+39776799 | MS.gene37071:CDS |
| AAGGCGAAAGCGCGTTTGGG+AGG | 0.562145 | 1.4:+39776798 | MS.gene37071:CDS |
| AGGAATTGGAGAAGGCGTTG+AGG | 0.564827 | 1.4:+39777155 | MS.gene37071:CDS |
| TGAACCGAACGGTCCAGTAC+CGG | 0.570691 | 1.4:-39776393 | None:intergenic |
| AAAACCGGTACTGGACCGTT+CGG | 0.575742 | 1.4:+39776389 | MS.gene37071:CDS |
| ACACTAAACCCACCAATCAC+CGG | 0.580138 | 1.4:-39776641 | None:intergenic |
| GAACATTTACCGGCGGAATG+TGG | 0.590103 | 1.4:+39776854 | MS.gene37071:CDS |
| GCTAGTGTAAGGATTGGAGG+AGG | 0.592495 | 1.4:+39777043 | MS.gene37071:CDS |
| TCAGCCTCAGTCGATCTCCC+AGG | 0.596339 | 1.4:-39777124 | None:intergenic |
| TGCTGTGAAGAGGCAAATGG+AGG | 0.598019 | 1.4:+39776961 | MS.gene37071:CDS |
| AATTCAAGCTCCAACAGTGG+TGG | 0.602493 | 1.4:-39777182 | None:intergenic |
| TTGGGAAGGTACCGTCGGCG+GGG | 0.603962 | 1.4:+39776663 | MS.gene37071:CDS |
| GCTACGATTCCACTTTGGAA+TGG | 0.605154 | 1.4:-39776254 | None:intergenic |
| TTGAATTCAAGCTCCAACAG+TGG | 0.608904 | 1.4:-39777185 | None:intergenic |
| TAGTGTTGGGAAGGTACCGT+CGG | 0.614168 | 1.4:+39776658 | MS.gene37071:CDS |
| TGCGAGTAAGGAATTGGAGA+AGG | 0.621033 | 1.4:+39777147 | MS.gene37071:CDS |
| TCTTGTGATGGATAAAATTG+GGG | 0.621136 | 1.4:+39776829 | MS.gene37071:CDS |
| AGGCGGAGAATGGATTGCTA+AGG | 0.621508 | 1.4:+39776990 | MS.gene37071:CDS |
| TTAAAATGAAGCATGAAAAG+CGG | 0.624010 | 1.4:-39776491 | None:intergenic |
| TATTCGTTTCCGCAAAACGG+TGG | 0.626157 | 1.4:+39776575 | MS.gene37071:CDS |
| TGTGATGGATAAAATTGGGG+TGG | 0.626777 | 1.4:+39776832 | MS.gene37071:CDS |
| CTTCACAGCAAAACACGTCT+CGG | 0.629364 | 1.4:-39776948 | None:intergenic |
| TGTTCCGACGAGTGCTGATG+TGG | 0.637314 | 1.4:+39776925 | MS.gene37071:CDS |
| GAAAGAATGAGAAGAAAACC+GGG | 0.648044 | 1.4:+39777083 | MS.gene37071:CDS |
| AGGACTAGGGTTCCAATTAG+GGG | 0.649797 | 1.4:+39776725 | MS.gene37071:CDS |
| CGGGGACTGAGGTTGCGGCG+AGG | 0.653848 | 1.4:+39776705 | MS.gene37071:CDS |
| GAATGAGAAGAAAACCGGGT+CGG | 0.658276 | 1.4:+39777087 | MS.gene37071:CDS |
| GAATTGGAGAAGGCGTTGAG+GGG | 0.663780 | 1.4:+39777157 | MS.gene37071:CDS |
| TGGATTGCTAAGGAATGCTG+TGG | 0.668689 | 1.4:+39777000 | MS.gene37071:CDS |
| CTCGACAACGGTGAACCGAA+CGG | 0.669798 | 1.4:-39776404 | None:intergenic |
| CTAGTGTAAGGATTGGAGGA+GGG | 0.671920 | 1.4:+39777044 | MS.gene37071:CDS |
| ATTGCTAAGGAATGCTGTGG+AGG | 0.676929 | 1.4:+39777003 | MS.gene37071:CDS |
| CTAGGAACACCATTCCAAAG+TGG | 0.680514 | 1.4:+39776245 | MS.gene37071:CDS |
| CGGTAAGCGAGTTTCAACGT+TGG | 0.681726 | 1.4:-39776329 | None:intergenic |
| TGGGGTGGAACATTTACCGG+CGG | 0.685023 | 1.4:+39776847 | MS.gene37071:CDS |
| TCGGCCACATCAGCACTCGT+CGG | 0.685301 | 1.4:-39776929 | None:intergenic |
| TTATCCTGGGAGATCGACTG+AGG | 0.690966 | 1.4:+39777120 | MS.gene37071:CDS |
| ATAACCACTAAAATCCGACC+CGG | 0.702407 | 1.4:-39777101 | None:intergenic |
| GAGGAGGGAAAAGCTTCGAG+GGG | 0.705462 | 1.4:+39777059 | MS.gene37071:CDS |
| ATCAGCATAGAACTCGACAA+CGG | 0.713613 | 1.4:-39776416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATTTGAAGAATTTGAAGAA+AGG | + | chr1.4:39776878-39776897 | MS.gene37071:CDS | 25.0% |
| ! | TTAAAATGAAGCATGAAAAG+CGG | - | chr1.4:39776494-39776513 | None:intergenic | 25.0% |
| !! | AGTTCGATTTTAGATGTTAA+GGG | + | chr1.4:39776551-39776570 | MS.gene37071:CDS | 25.0% |
| !! | ATTTTATCCATCACAAGAAA+CGG | - | chr1.4:39776827-39776846 | None:intergenic | 25.0% |
| !!! | TTCTTGTGATGGATAAAATT+GGG | + | chr1.4:39776828-39776847 | MS.gene37071:CDS | 25.0% |
| !!! | TTTCTTGTGATGGATAAAAT+TGG | + | chr1.4:39776827-39776846 | MS.gene37071:CDS | 25.0% |
| AATGAAAAATCACCAAACCT+AGG | - | chr1.4:39776518-39776537 | None:intergenic | 30.0% | |
| AATTTGAAGAAAGGAAAGGT+TGG | + | chr1.4:39776887-39776906 | MS.gene37071:CDS | 30.0% | |
| AGAAAGAATGAGAAGAAAAC+CGG | + | chr1.4:39777082-39777101 | MS.gene37071:CDS | 30.0% | |
| GAAGAATTTGAAGAAAGGAA+AGG | + | chr1.4:39776883-39776902 | MS.gene37071:CDS | 30.0% | |
| ! | AAAGTACCCTTAAGTATTCT+AGG | + | chr1.4:39776227-39776246 | MS.gene37071:CDS | 30.0% |
| ! | CTTCATTTTAAACCTAGGTT+TGG | + | chr1.4:39776503-39776522 | MS.gene37071:CDS | 30.0% |
| ! | GAGTTCGATTTTAGATGTTA+AGG | + | chr1.4:39776550-39776569 | MS.gene37071:CDS | 30.0% |
| ! | GTTTTCACGATCAATGAAAA+CGG | - | chr1.4:39776374-39776393 | None:intergenic | 30.0% |
| ! | TCATGCTTCATTTTAAACCT+AGG | + | chr1.4:39776498-39776517 | MS.gene37071:CDS | 30.0% |
| ! | TTTTCACGATCAATGAAAAC+GGG | - | chr1.4:39776373-39776392 | None:intergenic | 30.0% |
| ! | TTTTCATTGATCGTGAAAAC+CGG | + | chr1.4:39776374-39776393 | MS.gene37071:CDS | 30.0% |
| !! | ATTTGAGTTTGTTGAATCTC+CGG | + | chr1.4:39776622-39776641 | MS.gene37071:CDS | 30.0% |
| !! | TAGAATACTTAAGGGTACTT+TGG | - | chr1.4:39776228-39776247 | None:intergenic | 30.0% |
| !! | TCTTGTGATGGATAAAATTG+GGG | + | chr1.4:39776829-39776848 | MS.gene37071:CDS | 30.0% |
| GAAAGAATGAGAAGAAAACC+GGG | + | chr1.4:39777083-39777102 | MS.gene37071:CDS | 35.0% | |
| GGTGTTCCTAGAATACTTAA+GGG | - | chr1.4:39776236-39776255 | None:intergenic | 35.0% | |
| TGGTGTTCCTAGAATACTTA+AGG | - | chr1.4:39776237-39776256 | None:intergenic | 35.0% | |
| !! | GGTACTTTGGCTCTTAATAA+GGG | - | chr1.4:39776215-39776234 | None:intergenic | 35.0% |
| AATTGGGGTGGAACATTTAC+CGG | + | chr1.4:39776844-39776863 | MS.gene37071:CDS | 40.0% | |
| ATAACCACTAAAATCCGACC+CGG | - | chr1.4:39777104-39777123 | None:intergenic | 40.0% | |
| ATCAGCATAGAACTCGACAA+CGG | - | chr1.4:39776419-39776438 | None:intergenic | 40.0% | |
| CTCTCAACTTTCTTCCAATC+CGG | + | chr1.4:39776305-39776324 | MS.gene37071:CDS | 40.0% | |
| CTGAACCGGAATGATAAAAC+CGG | + | chr1.4:39776458-39776477 | MS.gene37071:CDS | 40.0% | |
| GAATTCGCTAGTGTAAGGAT+TGG | + | chr1.4:39777037-39777056 | MS.gene37071:CDS | 40.0% | |
| GGTTATTCGTTTCCGCAAAA+CGG | + | chr1.4:39776572-39776591 | MS.gene37071:CDS | 40.0% | |
| TTTGTTGAATCTCCGGTGAT+TGG | + | chr1.4:39776629-39776648 | MS.gene37071:CDS | 40.0% | |
| ! | AGGGTTTCTTTTGTTCATCG+CGG | - | chr1.4:39776196-39776215 | None:intergenic | 40.0% |
| !! | CGGATTTTAGTGGTTATCCT+GGG | + | chr1.4:39777107-39777126 | MS.gene37071:CDS | 40.0% |
| !! | GGGTACTTTGGCTCTTAATA+AGG | - | chr1.4:39776216-39776235 | None:intergenic | 40.0% |
| !! | TCGGATTTTAGTGGTTATCC+TGG | + | chr1.4:39777106-39777125 | MS.gene37071:CDS | 40.0% |
| !! | TGATTGGTGGGTTTAGTGTT+GGG | + | chr1.4:39776645-39776664 | MS.gene37071:CDS | 40.0% |
| !! | TGTGATGGATAAAATTGGGG+TGG | + | chr1.4:39776832-39776851 | MS.gene37071:CDS | 40.0% |
| !! | TTTTGCTGTGAAGAGGCAAA+TGG | + | chr1.4:39776958-39776977 | MS.gene37071:CDS | 40.0% |
| ACACTAAACCCACCAATCAC+CGG | - | chr1.4:39776644-39776663 | None:intergenic | 45.0% | |
| AGGACTAGGGTTCCAATTAG+GGG | + | chr1.4:39776725-39776744 | MS.gene37071:CDS | 45.0% | |
| ATTGCTAAGGAATGCTGTGG+AGG | + | chr1.4:39777003-39777022 | MS.gene37071:CDS | 45.0% | |
| CTAGGAACACCATTCCAAAG+TGG | + | chr1.4:39776245-39776264 | MS.gene37071:CDS | 45.0% | |
| CTAGTGTAAGGATTGGAGGA+GGG | + | chr1.4:39777044-39777063 | MS.gene37071:CDS | 45.0% | |
| CTTCACAGCAAAACACGTCT+CGG | - | chr1.4:39776951-39776970 | None:intergenic | 45.0% | |
| GAATGAGAAGAAAACCGGGT+CGG | + | chr1.4:39777087-39777106 | MS.gene37071:CDS | 45.0% | |
| GAGGACTAGGGTTCCAATTA+GGG | + | chr1.4:39776724-39776743 | MS.gene37071:CDS | 45.0% | |
| GGAGAGAATTCGCTAGTGTA+AGG | + | chr1.4:39777032-39777051 | MS.gene37071:CDS | 45.0% | |
| TATTCGTTTCCGCAAAACGG+TGG | + | chr1.4:39776575-39776594 | MS.gene37071:CDS | 45.0% | |
| TGAAGCATGAAAAGCGGTTG+AGG | - | chr1.4:39776488-39776507 | None:intergenic | 45.0% | |
| TGCGAGTAAGGAATTGGAGA+AGG | + | chr1.4:39777147-39777166 | MS.gene37071:CDS | 45.0% | |
| TGGATTGCTAAGGAATGCTG+TGG | + | chr1.4:39777000-39777019 | MS.gene37071:CDS | 45.0% | |
| TTCAAATCTCCACATTCCGC+CGG | - | chr1.4:39776866-39776885 | None:intergenic | 45.0% | |
| TTCCAAAGTGGAATCGTAGC+TGG | + | chr1.4:39776257-39776276 | MS.gene37071:CDS | 45.0% | |
| TTCGCTAGTGTAAGGATTGG+AGG | + | chr1.4:39777040-39777059 | MS.gene37071:CDS | 45.0% | |
| TTGAATCTCCGGTGATTGGT+GGG | + | chr1.4:39776633-39776652 | MS.gene37071:CDS | 45.0% | |
| TTGATCGTGAAAACCGGTAC+TGG | + | chr1.4:39776380-39776399 | MS.gene37071:CDS | 45.0% | |
| ! | AAAACCGGGTCGGATTTTAG+TGG | + | chr1.4:39777097-39777116 | MS.gene37071:CDS | 45.0% |
| ! | GCTACGATTCCACTTTGGAA+TGG | - | chr1.4:39776257-39776276 | None:intergenic | 45.0% |
| ! | TTAAAGGCGAAAGCGCGTTT+GGG | + | chr1.4:39776795-39776814 | MS.gene37071:CDS | 45.0% |
| !! | AAACGGGTTTTGTGAGTCGT+TGG | - | chr1.4:39776357-39776376 | None:intergenic | 45.0% |
| !! | AACGGGTTTTGTGAGTCGTT+GGG | - | chr1.4:39776356-39776375 | None:intergenic | 45.0% |
| !! | AGACGTGTTTTGCTGTGAAG+AGG | + | chr1.4:39776951-39776970 | MS.gene37071:CDS | 45.0% |
| !! | GAATTTTAGGTGGGGGGTTA+GGG | + | chr1.4:39776760-39776779 | MS.gene37071:CDS | 45.0% |
| !! | GCGAACCGGTTTTATCATTC+CGG | - | chr1.4:39776466-39776485 | None:intergenic | 45.0% |
| !! | GCGAGTTCAATTTGCTGAAC+CGG | + | chr1.4:39776444-39776463 | MS.gene37071:CDS | 45.0% |
| !! | GTGATTGGTGGGTTTAGTGT+TGG | + | chr1.4:39776644-39776663 | MS.gene37071:CDS | 45.0% |
| !! | TGAATTTTAGGTGGGGGGTT+AGG | + | chr1.4:39776759-39776778 | MS.gene37071:CDS | 45.0% |
| !! | TGCTGCGGTGAATTTTAGGT+GGG | + | chr1.4:39776751-39776770 | MS.gene37071:CDS | 45.0% |
| AGCGAGTTTCAACGTTGGAC+CGG | - | chr1.4:39776327-39776346 | None:intergenic | 50.0% | |
| CACCAGCTACGATTCCACTT+TGG | - | chr1.4:39776262-39776281 | None:intergenic | 50.0% | |
| CGAGGACTAGGGTTCCAATT+AGG | + | chr1.4:39776723-39776742 | MS.gene37071:CDS | 50.0% | |
| CGGTAAGCGAGTTTCAACGT+TGG | - | chr1.4:39776332-39776351 | None:intergenic | 50.0% | |
| CTTTCGCCTTTAACCTCAGC+CGG | - | chr1.4:39776788-39776807 | None:intergenic | 50.0% | |
| GAACATTTACCGGCGGAATG+TGG | + | chr1.4:39776854-39776873 | MS.gene37071:CDS | 50.0% | |
| GAGGGTTCCGTTTCTTGTGA+TGG | + | chr1.4:39776817-39776836 | MS.gene37071:CDS | 50.0% | |
| GCTAGTGTAAGGATTGGAGG+AGG | + | chr1.4:39777043-39777062 | MS.gene37071:CDS | 50.0% | |
| GGAATGCTGTGGAGGATCTT+CGG | + | chr1.4:39777011-39777030 | MS.gene37071:CDS | 50.0% | |
| GGCTGATGCGAGTAAGGAAT+TGG | + | chr1.4:39777141-39777160 | MS.gene37071:CDS | 50.0% | |
| GTTGAATCTCCGGTGATTGG+TGG | + | chr1.4:39776632-39776651 | MS.gene37071:CDS | 50.0% | |
| GTTTCAACGTTGGACCGGAT+TGG | - | chr1.4:39776322-39776341 | None:intergenic | 50.0% | |
| TGCTGTGAAGAGGCAAATGG+AGG | + | chr1.4:39776961-39776980 | MS.gene37071:CDS | 50.0% | |
| TTATCCTGGGAGATCGACTG+AGG | + | chr1.4:39777120-39777139 | MS.gene37071:CDS | 50.0% | |
| ! | AAAACCGGTACTGGACCGTT+CGG | + | chr1.4:39776389-39776408 | MS.gene37071:CDS | 50.0% |
| ! | GACGTGCTGCGGTGAATTTT+AGG | + | chr1.4:39776747-39776766 | MS.gene37071:CDS | 50.0% |
| ! | GAGGCAAATGGAGGTTTTGC+AGG | + | chr1.4:39776970-39776989 | MS.gene37071:CDS | 50.0% |
| ! | GCAAATGGAGGTTTTGCAGG+CGG | + | chr1.4:39776973-39776992 | MS.gene37071:CDS | 50.0% |
| ! | GTGCTGCGGTGAATTTTAGG+TGG | + | chr1.4:39776750-39776769 | MS.gene37071:CDS | 50.0% |
| ! | GTTAAAGGCGAAAGCGCGTT+TGG | + | chr1.4:39776794-39776813 | MS.gene37071:CDS | 50.0% |
| !! | AAGGTTGGTGCTGCTGTAGT+TGG | + | chr1.4:39776902-39776921 | MS.gene37071:CDS | 50.0% |
| !! | AGGAATTGGAGAAGGCGTTG+AGG | + | chr1.4:39777155-39777174 | MS.gene37071:CDS | 50.0% |
| !! | AGGCGGAGAATGGATTGCTA+AGG | + | chr1.4:39776990-39777009 | MS.gene37071:CDS | 50.0% |
| !! | CTGCGGTGAATTTTAGGTGG+GGG | + | chr1.4:39776753-39776772 | MS.gene37071:CDS | 50.0% |
| !! | GAATTGGAGAAGGCGTTGAG+GGG | + | chr1.4:39777157-39777176 | MS.gene37071:CDS | 50.0% |
| !! | GCTGCGGTGAATTTTAGGTG+GGG | + | chr1.4:39776752-39776771 | MS.gene37071:CDS | 50.0% |
| !! | GGAATTGGAGAAGGCGTTGA+GGG | + | chr1.4:39777156-39777175 | MS.gene37071:CDS | 50.0% |
| !! | GGTTTTGTGAGTCGTTGGGT+CGG | - | chr1.4:39776352-39776371 | None:intergenic | 50.0% |
| !! | TAGTGTTGGGAAGGTACCGT+CGG | + | chr1.4:39776658-39776677 | MS.gene37071:CDS | 50.0% |
| !! | TGCGGTGAATTTTAGGTGGG+GGG | + | chr1.4:39776754-39776773 | MS.gene37071:CDS | 50.0% |
| !! | TGGTGGGTTTAGTGTTGGGA+AGG | + | chr1.4:39776649-39776668 | MS.gene37071:CDS | 50.0% |
| !!! | TGGCGTTTTGGGGAATGATG+AGG | + | chr1.4:39776595-39776614 | MS.gene37071:CDS | 50.0% |
| AGGGTTCCGGCTGAGGTTAA+AGG | + | chr1.4:39776779-39776798 | MS.gene37071:CDS | 55.0% | |
| CTCGACAACGGTGAACCGAA+CGG | - | chr1.4:39776407-39776426 | None:intergenic | 55.0% | |
| GAAAAGCGGTTGAGGCGAAC+CGG | - | chr1.4:39776480-39776499 | None:intergenic | 55.0% | |
| GACTGAGGCTGATGCGAGTA+AGG | + | chr1.4:39777135-39777154 | MS.gene37071:CDS | 55.0% | |
| GAGGAGGGAAAAGCTTCGAG+GGG | + | chr1.4:39777059-39777078 | MS.gene37071:CDS | 55.0% | |
| GGAGGAGGGAAAAGCTTCGA+GGG | + | chr1.4:39777058-39777077 | MS.gene37071:CDS | 55.0% | |
| TCCAATTAGGGGACGTGCTG+CGG | + | chr1.4:39776736-39776755 | MS.gene37071:CDS | 55.0% | |
| TGAACCGAACGGTCCAGTAC+CGG | - | chr1.4:39776396-39776415 | None:intergenic | 55.0% | |
| TGGAGGAGGGAAAAGCTTCG+AGG | + | chr1.4:39777057-39777076 | MS.gene37071:CDS | 55.0% | |
| TGGGGTGGAACATTTACCGG+CGG | + | chr1.4:39776847-39776866 | MS.gene37071:CDS | 55.0% | |
| ! | CCCAAAACGCCACCGTTTTG+CGG | - | chr1.4:39776587-39776606 | None:intergenic | 55.0% |
| ! | CCGCAAAACGGTGGCGTTTT+GGG | + | chr1.4:39776584-39776603 | MS.gene37071:CDS | 55.0% |
| ! | CGCAAAACGGTGGCGTTTTG+GGG | + | chr1.4:39776585-39776604 | MS.gene37071:CDS | 55.0% |
| ! | GAGGTTTTGCAGGCGGAGAA+TGG | + | chr1.4:39776980-39776999 | MS.gene37071:CDS | 55.0% |
| ! | TCCGCAAAACGGTGGCGTTT+TGG | + | chr1.4:39776583-39776602 | MS.gene37071:CDS | 55.0% |
| !! | CGATTGCGGGGTTGTTTTCG+GGG | + | chr1.4:39776687-39776706 | MS.gene37071:CDS | 55.0% |
| !! | GCGATTGCGGGGTTGTTTTC+GGG | + | chr1.4:39776686-39776705 | MS.gene37071:CDS | 55.0% |
| !! | GGCGATTGCGGGGTTGTTTT+CGG | + | chr1.4:39776685-39776704 | MS.gene37071:CDS | 55.0% |
| !! | GTTTTCGGGGACTGAGGTTG+CGG | + | chr1.4:39776700-39776719 | MS.gene37071:CDS | 55.0% |
| !! | TGTTCCGACGAGTGCTGATG+TGG | + | chr1.4:39776925-39776944 | MS.gene37071:CDS | 55.0% |
| ACCGCAGCACGTCCCCTAAT+TGG | - | chr1.4:39776740-39776759 | None:intergenic | 60.0% | |
| TAGGTGGGGGGTTAGGGTTC+CGG | + | chr1.4:39776766-39776785 | MS.gene37071:CDS | 60.0% | |
| TCAGCCTCAGTCGATCTCCC+AGG | - | chr1.4:39777127-39777146 | None:intergenic | 60.0% | |
| TCGGCCACATCAGCACTCGT+CGG | - | chr1.4:39776932-39776951 | None:intergenic | 60.0% | |
| TGAGGTTGCGGCGAGGACTA+GGG | + | chr1.4:39776712-39776731 | MS.gene37071:CDS | 60.0% | |
| TTGAGGGGAGCCACCACTGT+TGG | + | chr1.4:39777172-39777191 | MS.gene37071:CDS | 60.0% | |
| ! | AAGGCGAAAGCGCGTTTGGG+AGG | + | chr1.4:39776798-39776817 | MS.gene37071:CDS | 60.0% |
| ! | AGGCGAAAGCGCGTTTGGGA+GGG | + | chr1.4:39776799-39776818 | MS.gene37071:CDS | 60.0% |
| !! | GGGGTTGTTTTCGGGGACTG+AGG | + | chr1.4:39776694-39776713 | MS.gene37071:CDS | 60.0% |
| !! | TGTTGGGAAGGTACCGTCGG+CGG | + | chr1.4:39776661-39776680 | MS.gene37071:CDS | 60.0% |
| CTGAGGTTGCGGCGAGGACT+AGG | + | chr1.4:39776711-39776730 | MS.gene37071:CDS | 65.0% | |
| !! | GTTGGGAAGGTACCGTCGGC+GGG | + | chr1.4:39776662-39776681 | MS.gene37071:CDS | 65.0% |
| !! | TTGGGAAGGTACCGTCGGCG+GGG | + | chr1.4:39776663-39776682 | MS.gene37071:CDS | 65.0% |
| GGGGGTTAGGGTTCCGGCTG+AGG | + | chr1.4:39776772-39776791 | MS.gene37071:CDS | 70.0% | |
| !! | TGGGAAGGTACCGTCGGCGG+GGG | + | chr1.4:39776664-39776683 | MS.gene37071:CDS | 70.0% |
| ACCGTCGGCGGGGGCGATTG+CGG | + | chr1.4:39776673-39776692 | MS.gene37071:CDS | 75.0% | |
| CGGGGACTGAGGTTGCGGCG+AGG | + | chr1.4:39776705-39776724 | MS.gene37071:CDS | 75.0% | |
| ! | CCCGCAATCGCCCCCGCCGA+CGG | - | chr1.4:39776677-39776696 | None:intergenic | 80.0% |
| ! | CCGTCGGCGGGGGCGATTGC+GGG | + | chr1.4:39776674-39776693 | MS.gene37071:CDS | 80.0% |
| ! | CGTCGGCGGGGGCGATTGCG+GGG | + | chr1.4:39776675-39776694 | MS.gene37071:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 39776173 | 39777201 | 39776173 | ID=MS.gene37071 |
| chr1.4 | mRNA | 39776173 | 39777201 | 39776173 | ID=MS.gene37071.t1;Parent=MS.gene37071 |
| chr1.4 | exon | 39776173 | 39777201 | 39776173 | ID=MS.gene37071.t1.exon1;Parent=MS.gene37071.t1 |
| chr1.4 | CDS | 39776173 | 39777201 | 39776173 | ID=cds.MS.gene37071.t1;Parent=MS.gene37071.t1 |
| Gene Sequence |
| Protein sequence |
