Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37195.t1 | XP_013451101.1 | 98.6 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 1.60E-211 | 745 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37195.t1 | Q9SC19 | 87.7 | 342 | 42 | 0 | 1 | 342 | 1 | 342 | 1.9e-192 | 672.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37195.t1 | A0A072U6Y0 | 98.6 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 1.2e-211 | 745.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050875 | MS.gene37195 | 0.806715 | 7.19E-50 | -1.69E-46 |
| MS.gene051914 | MS.gene37195 | 0.841273 | 5.25E-58 | -1.69E-46 |
| MS.gene052169 | MS.gene37195 | 0.864923 | 8.57E-65 | -1.69E-46 |
| MS.gene052308 | MS.gene37195 | 0.841165 | 5.61E-58 | -1.69E-46 |
| MS.gene052367 | MS.gene37195 | 0.822866 | 1.88E-53 | -1.69E-46 |
| MS.gene053173 | MS.gene37195 | 0.814936 | 1.20E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene37195 | 0.813269 | 2.79E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene37195 | 0.813606 | 2.35E-51 | -1.69E-46 |
| MS.gene054633 | MS.gene37195 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene054662 | MS.gene37195 | 0.860255 | 2.35E-63 | -1.69E-46 |
| MS.gene055308 | MS.gene37195 | 0.822052 | 2.91E-53 | -1.69E-46 |
| MS.gene055578 | MS.gene37195 | 0.819546 | 1.10E-52 | -1.69E-46 |
| MS.gene056041 | MS.gene37195 | 0.819849 | 9.36E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene37195 | 0.845696 | 3.46E-59 | -1.69E-46 |
| MS.gene05652 | MS.gene37195 | 0.824931 | 6.18E-54 | -1.69E-46 |
| MS.gene05732 | MS.gene37195 | 0.81867 | 1.74E-52 | -1.69E-46 |
| MS.gene057367 | MS.gene37195 | 0.831606 | 1.52E-55 | -1.69E-46 |
| MS.gene057458 | MS.gene37195 | 0.857491 | 1.57E-62 | -1.69E-46 |
| MS.gene058853 | MS.gene37195 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene059553 | MS.gene37195 | 0.813488 | 2.50E-51 | -1.69E-46 |
| MS.gene059616 | MS.gene37195 | 0.805464 | 1.32E-49 | -1.69E-46 |
| MS.gene060291 | MS.gene37195 | 0.801738 | 7.81E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene37195 | 0.866174 | 3.46E-65 | -1.69E-46 |
| MS.gene061260 | MS.gene37195 | 0.816098 | 6.59E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37195.t1 | MTR_6g015905 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| MS.gene37195.t1 | MTR_7g015970 | 90.087 | 343 | 34 | 0 | 1 | 343 | 1 | 343 | 0.0 | 662 |
| MS.gene37195.t1 | MTR_5g046030 | 87.536 | 345 | 40 | 1 | 1 | 342 | 1 | 345 | 0.0 | 642 |
| MS.gene37195.t1 | MTR_2g461970 | 85.673 | 342 | 49 | 0 | 2 | 343 | 4 | 345 | 0.0 | 633 |
| MS.gene37195.t1 | MTR_7g079490 | 49.412 | 340 | 166 | 4 | 10 | 344 | 9 | 347 | 4.09e-125 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37195.t1 | AT3G02230 | 88.012 | 342 | 41 | 0 | 6 | 347 | 16 | 357 | 0.0 | 643 |
| MS.gene37195.t1 | AT5G15650 | 86.880 | 343 | 45 | 0 | 5 | 347 | 15 | 357 | 0.0 | 640 |
| MS.gene37195.t1 | AT3G08900 | 82.799 | 343 | 59 | 0 | 5 | 347 | 11 | 353 | 0.0 | 621 |
| MS.gene37195.t1 | AT5G50750 | 77.101 | 345 | 79 | 0 | 2 | 346 | 8 | 352 | 0.0 | 582 |
| MS.gene37195.t1 | AT5G16510 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 1.90e-120 | 351 |
| MS.gene37195.t1 | AT5G16510 | 48.680 | 341 | 169 | 3 | 9 | 344 | 8 | 347 | 1.90e-120 | 351 |
Find 75 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGAACCTTGATTTCT+TGG | 0.184256 | 6.2:-10724373 | MS.gene37195:CDS |
| ATTGGACCAGCTATGTATTT+TGG | 0.233920 | 6.2:-10722397 | MS.gene37195:CDS |
| TTGATTATGAACTTTATAAT+AGG | 0.252799 | 6.2:-10724263 | MS.gene37195:CDS |
| ACACCTTCACGAAGACTAAA+AGG | 0.265235 | 6.2:+10723230 | None:intergenic |
| AATGATATTAATAAGCTTCT+TGG | 0.286010 | 6.2:-10724240 | MS.gene37195:CDS |
| ACATTGTGATTCCTACTATA+AGG | 0.293463 | 6.2:-10724389 | MS.gene37195:CDS |
| AAATGATAAGGTTCAAAATA+TGG | 0.294723 | 6.2:+10724339 | None:intergenic |
| AAATCAGCACCTTCTCTAAA+AGG | 0.303616 | 6.2:+10723266 | None:intergenic |
| TGAACAGTTGTGCATTCTTT+TGG | 0.313245 | 6.2:+10721854 | None:intergenic |
| TGCTTTGCTATGAAAGATAT+AGG | 0.314459 | 6.2:+10721964 | None:intergenic |
| TCAGGTAATCTGTGATCATT+TGG | 0.321965 | 6.2:-10722011 | MS.gene37195:intron |
| ATTGGAAATAATGTTCCTTT+TGG | 0.323828 | 6.2:+10722454 | None:intergenic |
| TCTGCAAGCTTGTCAAAATA+AGG | 0.337023 | 6.2:+10721776 | None:intergenic |
| GACTCTGCATGTCGTTGCTT+TGG | 0.356660 | 6.2:-10724189 | MS.gene37195:CDS |
| GGCTTCTTGCATTTCATTCA+AGG | 0.357909 | 6.2:-10724211 | MS.gene37195:CDS |
| TGCCTTTGTACTCTTTCCTT+AGG | 0.366078 | 6.2:+10721924 | None:intergenic |
| CTTCTCTAAAAGGATCATAA+AGG | 0.369468 | 6.2:+10723276 | None:intergenic |
| GCTTTGCTATGAAAGATATA+GGG | 0.383869 | 6.2:+10721965 | None:intergenic |
| ATGTCGTTGCTTTGGTTACA+TGG | 0.386419 | 6.2:-10724181 | MS.gene37195:CDS |
| ATCTGTGATCATTTGGGACT+TGG | 0.386651 | 6.2:-10722004 | MS.gene37195:CDS |
| AAGAGTACAAAGGCATATTC+TGG | 0.396965 | 6.2:-10721916 | MS.gene37195:CDS |
| GGTCACTTGGATTGAAGCTT+GGG | 0.405282 | 6.2:-10721747 | MS.gene37195:CDS |
| CAGCTATTTCTCATGGACTT+TGG | 0.419478 | 6.2:-10723202 | MS.gene37195:CDS |
| TTAATAAGCTTCTTGGTCCT+AGG | 0.431885 | 6.2:-10724233 | MS.gene37195:CDS |
| GCATTTGATCGTGATCTGAT+TGG | 0.439539 | 6.2:-10722415 | MS.gene37195:CDS |
| ATGGGAGATGGTCAGCCAAT+TGG | 0.441337 | 6.2:-10722370 | MS.gene37195:CDS |
| CAGGTAATCTGTGATCATTT+GGG | 0.450620 | 6.2:-10722010 | MS.gene37195:CDS |
| CTTTCCTTAGGTTCACAAAT+GGG | 0.453354 | 6.2:+10721936 | None:intergenic |
| CATTTGATCATTGTTCAAGA+TGG | 0.457553 | 6.2:-10724321 | MS.gene37195:CDS |
| TTCTCTAAAAGGATCATAAA+GGG | 0.459821 | 6.2:+10723277 | None:intergenic |
| ACCTTGATTTCTTGGAAATG+TGG | 0.471408 | 6.2:-10724365 | MS.gene37195:CDS |
| TCTTTCCTTAGGTTCACAAA+TGG | 0.471856 | 6.2:+10721935 | None:intergenic |
| TCCACATTTCCAAGAAATCA+AGG | 0.472751 | 6.2:+10724364 | None:intergenic |
| TAATAAGCTTCTTGGTCCTA+GGG | 0.473474 | 6.2:-10724232 | MS.gene37195:CDS |
| TAGGTTGCCAATGATCCATC+TGG | 0.479239 | 6.2:-10723371 | MS.gene37195:CDS |
| ATGTCAAGTTGATCTTTCAA+TGG | 0.487236 | 6.2:+10724408 | None:intergenic |
| CGCTATGATGACATGTGGGC+TGG | 0.488642 | 6.2:-10722346 | MS.gene37195:CDS |
| TGAGTAGGAGCATCATAATC+TGG | 0.489281 | 6.2:+10723170 | None:intergenic |
| TGACAAGCTTGCAGATGCTA+TGG | 0.491811 | 6.2:-10721768 | MS.gene37195:CDS |
| TGGTCACTTGGATTGAAGCT+TGG | 0.492678 | 6.2:-10721748 | MS.gene37195:CDS |
| ATGTCATCATAGCGTCCAAT+TGG | 0.497351 | 6.2:+10722355 | None:intergenic |
| AAATCAAGGTTCCTTATAGT+AGG | 0.497648 | 6.2:+10724378 | None:intergenic |
| TTGGGACTTGGAATCAAGAC+TGG | 0.499638 | 6.2:-10721992 | MS.gene37195:CDS |
| TGAACAATGATCAAATGATA+AGG | 0.500026 | 6.2:+10724327 | None:intergenic |
| AGAGGCTTGACAAGCTGAGT+AGG | 0.500476 | 6.2:+10723155 | None:intergenic |
| TCCAATGTGTGGAATGAACT+TGG | 0.503402 | 6.2:-10722437 | MS.gene37195:CDS |
| GGAACATTATTTCCAATGTG+TGG | 0.516575 | 6.2:-10722448 | MS.gene37195:CDS |
| ATGATGACATGTGGGCTGGC+TGG | 0.518783 | 6.2:-10722342 | MS.gene37195:CDS |
| GTGGGCTGGCTGGTGCTGCA+AGG | 0.521238 | 6.2:-10722332 | MS.gene37195:intron |
| GTCCATGAGAAATAGCTGTT+GGG | 0.527902 | 6.2:+10723207 | None:intergenic |
| GCCAAGTTCATTCCACACAT+TGG | 0.530763 | 6.2:+10722436 | None:intergenic |
| ATGGAGTTGATGGACACAAA+AGG | 0.531538 | 6.2:+10723312 | None:intergenic |
| GTAACCCATTTGTGAACCTA+AGG | 0.533378 | 6.2:-10721940 | MS.gene37195:CDS |
| GTCCCAACAGCTATTTCTCA+TGG | 0.539058 | 6.2:-10723209 | MS.gene37195:CDS |
| ACTGTTCTAACCATACCAAA+AGG | 0.541114 | 6.2:-10722469 | MS.gene37195:CDS |
| TTGCAGATGCTATGGTCACT+TGG | 0.544395 | 6.2:-10721760 | MS.gene37195:CDS |
| GTGTTGATGTATAAGGTATG+TGG | 0.557988 | 6.2:-10722494 | MS.gene37195:intron |
| AGTCCATGAGAAATAGCTGT+TGG | 0.559966 | 6.2:+10723206 | None:intergenic |
| AATGAAATGCAAGAAGCCCT+AGG | 0.561699 | 6.2:+10724216 | None:intergenic |
| ATGAGACCAAAATACATAGC+TGG | 0.563502 | 6.2:+10722391 | None:intergenic |
| GTACAAAGGCATATTCTGGC+AGG | 0.565304 | 6.2:-10721912 | MS.gene37195:CDS |
| CACCTTCACGAAGACTAAAA+GGG | 0.568809 | 6.2:+10723231 | None:intergenic |
| AAAACTATTAAGGTTCCACC+TGG | 0.576460 | 6.2:-10724288 | MS.gene37195:CDS |
| TACCTAGTGTTCCTCTCAAG+AGG | 0.579431 | 6.2:+10723137 | None:intergenic |
| TGAAATGTCCAAACAAGTCA+AGG | 0.580634 | 6.2:-10721819 | MS.gene37195:CDS |
| TTGATTTCTTGGAAATGTGG+AGG | 0.588191 | 6.2:-10724362 | MS.gene37195:CDS |
| TCAAGTTGATCTTTCAATGG+AGG | 0.604132 | 6.2:+10724411 | None:intergenic |
| TGCTATGAAAGATATAGGGA+AGG | 0.629150 | 6.2:+10721969 | None:intergenic |
| AGCTTGTCAAGCCTCTTGAG+AGG | 0.631328 | 6.2:-10723148 | MS.gene37195:CDS |
| AGCCTCTTGAGAGGAACACT+AGG | 0.655401 | 6.2:-10723139 | MS.gene37195:intron |
| TTGGACGCTATGATGACATG+TGG | 0.664130 | 6.2:-10722351 | MS.gene37195:CDS |
| TAAAGTTCATAATCAAAACC+AGG | 0.671327 | 6.2:+10724270 | None:intergenic |
| TGGACGCTATGATGACATGT+GGG | 0.691207 | 6.2:-10722350 | MS.gene37195:CDS |
| AGTTCATAATCAAAACCAGG+TGG | 0.695438 | 6.2:+10724273 | None:intergenic |
| AACCTAAGGAAAGAGTACAA+AGG | 0.702444 | 6.2:-10721926 | MS.gene37195:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATTAAAACAAACA+AGG | + | chr6.2:10722432-10722451 | None:intergenic | 10.0% |
| !! | TATTAAAAAAAATACAATGT+TGG | - | chr6.2:10723575-10723594 | MS.gene37195:intron | 10.0% |
| !! | AAAACAATGTAGTTAAAATT+TGG | - | chr6.2:10723443-10723462 | MS.gene37195:intron | 15.0% |
| !! | ATTGTATAAAACAATTTACA+TGG | - | chr6.2:10723303-10723322 | MS.gene37195:CDS | 15.0% |
| !! | TTGATTATGAACTTTATAAT+AGG | - | chr6.2:10721881-10721900 | MS.gene37195:CDS | 15.0% |
| !! | AAATGATAAGGTTCAAAATA+TGG | + | chr6.2:10721808-10721827 | None:intergenic | 20.0% |
| !! | AATGATATTAATAAGCTTCT+TGG | - | chr6.2:10721904-10721923 | MS.gene37195:CDS | 20.0% |
| !! | AATTCATATACTAATAACCT+AGG | + | chr6.2:10723265-10723284 | None:intergenic | 20.0% |
| !! | AGATATTATGTATGTATGTT+AGG | - | chr6.2:10723347-10723366 | MS.gene37195:CDS | 20.0% |
| !! | ATATGATTTCTTCACATTTA+TGG | - | chr6.2:10722132-10722151 | MS.gene37195:intron | 20.0% |
| !! | GTATTCTATAACATTAGATT+TGG | - | chr6.2:10722490-10722509 | MS.gene37195:intron | 20.0% |
| !! | TAAGTTACACAAAAAGAAAA+AGG | + | chr6.2:10722375-10722394 | None:intergenic | 20.0% |
| !! | TGTGTAACTTATAATTGTAT+TGG | - | chr6.2:10722384-10722403 | MS.gene37195:CDS | 20.0% |
| !!! | CATGTTATACTATTATTTCT+TGG | + | chr6.2:10723527-10723546 | None:intergenic | 20.0% |
| !!! | CTACTTTAGCTTTTTAATAT+TGG | - | chr6.2:10722199-10722218 | MS.gene37195:intron | 20.0% |
| !!! | GAAATCTTTATTTAAAACCT+AGG | - | chr6.2:10723245-10723264 | MS.gene37195:CDS | 20.0% |
| !!! | GACAATTCAAATTTAAAGTT+TGG | - | chr6.2:10723407-10723426 | MS.gene37195:intron | 20.0% |
| !!! | TACTACTGATGTTTTTTTTA+CGG | - | chr6.2:10723058-10723077 | MS.gene37195:intron | 20.0% |
| !!! | TCCATTGGTTTTATTTTTTT+TGG | - | chr6.2:10722641-10722660 | MS.gene37195:intron | 20.0% |
| !!! | TCTCAAAATTTTATCGATAT+TGG | - | chr6.2:10723980-10723999 | MS.gene37195:intron | 20.0% |
| !!! | TTTGTTTTGTACAATGTTTA+TGG | - | chr6.2:10722099-10722118 | MS.gene37195:intron | 20.0% |
| !!! | TTTTTTACGGTTTTAAATAG+CGG | - | chr6.2:10723071-10723090 | MS.gene37195:intron | 20.0% |
| ! | ATTTATGGTTCCATATTTCA+TGG | - | chr6.2:10722147-10722166 | MS.gene37195:intron | 25.0% |
| ! | CAAATAAAATCATCACAATG+AGG | + | chr6.2:10722173-10722192 | None:intergenic | 25.0% |
| ! | CATACATAATATCTCAATGT+TGG | + | chr6.2:10723341-10723360 | None:intergenic | 25.0% |
| ! | GCCAAAAAAAATAAAACCAA+TGG | + | chr6.2:10722645-10722664 | None:intergenic | 25.0% |
| ! | TAAAGTTCATAATCAAAACC+AGG | + | chr6.2:10721877-10721896 | None:intergenic | 25.0% |
| ! | TGAACAATGATCAAATGATA+AGG | + | chr6.2:10721820-10721839 | None:intergenic | 25.0% |
| ! | TTAATTGAATGATTCAGATG+TGG | - | chr6.2:10723477-10723496 | MS.gene37195:intron | 25.0% |
| !! | AAATAATGTTCCTTTTGGTA+TGG | + | chr6.2:10723688-10723707 | None:intergenic | 25.0% |
| !! | AGTATTTGTGTTGATGTATA+AGG | - | chr6.2:10723643-10723662 | MS.gene37195:intron | 25.0% |
| !! | ATTGGAAATAATGTTCCTTT+TGG | + | chr6.2:10723693-10723712 | None:intergenic | 25.0% |
| !! | GAACCTTAATAGTTTTTGAA+GGG | + | chr6.2:10721852-10721871 | None:intergenic | 25.0% |
| !! | TTCTCTAAAAGGATCATAAA+GGG | + | chr6.2:10722870-10722889 | None:intergenic | 25.0% |
| !! | TTGTGTTTTATGTGTCAATA+CGG | - | chr6.2:10722345-10722364 | MS.gene37195:CDS | 25.0% |
| !!! | ATAGACTTGAATCGATTTTA+TGG | - | chr6.2:10724045-10724064 | MS.gene37195:intron | 25.0% |
| !!! | CAATGATTCTTTAAGTTGTT+TGG | + | chr6.2:10724098-10724117 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTTTGGCATC+TGG | - | chr6.2:10722648-10722667 | MS.gene37195:intron | 25.0% |
| !!! | TAATTGTATTGGTTCAGTTA+TGG | - | chr6.2:10722395-10722414 | MS.gene37195:CDS | 25.0% |
| !!! | TTTCTTATGTACTTTTTGTG+TGG | - | chr6.2:10722748-10722767 | MS.gene37195:intron | 25.0% |
| AAACAAGTCAAGGAAAAACT+TGG | - | chr6.2:10724335-10724354 | MS.gene37195:CDS | 30.0% | |
| AAATCAAGGTTCCTTATAGT+AGG | + | chr6.2:10721769-10721788 | None:intergenic | 30.0% | |
| ACATTGTGATTCCTACTATA+AGG | - | chr6.2:10721755-10721774 | MS.gene37195:CDS | 30.0% | |
| CATTTGATCATTGTTCAAGA+TGG | - | chr6.2:10721823-10721842 | MS.gene37195:CDS | 30.0% | |
| GTGCATGATATTTAAACTCT+TGG | - | chr6.2:10723597-10723616 | MS.gene37195:intron | 30.0% | |
| TAATATTGGATATTGCGTTC+CGG | - | chr6.2:10722213-10722232 | MS.gene37195:intron | 30.0% | |
| TATAAGGAACCTTGATTTCT+TGG | - | chr6.2:10721771-10721790 | MS.gene37195:CDS | 30.0% | |
| TGACCCTTCAAAAACTATTA+AGG | - | chr6.2:10721846-10721865 | MS.gene37195:CDS | 30.0% | |
| TTGAAAAACAATGGAGTTGA+TGG | + | chr6.2:10722845-10722864 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | + | chr6.2:10722574-10722593 | None:intergenic | 30.0% | |
| TTGTTCATGATGAATTGTTC+AGG | - | chr6.2:10724115-10724134 | MS.gene37195:intron | 30.0% | |
| TTTACATTAGGGTAAAATGC+AGG | - | chr6.2:10722276-10722295 | MS.gene37195:intron | 30.0% | |
| ! | CTTCTCTAAAAGGATCATAA+AGG | + | chr6.2:10722871-10722890 | None:intergenic | 30.0% |
| ! | GCTTTGCTATGAAAGATATA+GGG | + | chr6.2:10724182-10724201 | None:intergenic | 30.0% |
| ! | GGAACCTTAATAGTTTTTGA+AGG | + | chr6.2:10721853-10721872 | None:intergenic | 30.0% |
| ! | TGCATTTTACCCTAATGTAA+AGG | + | chr6.2:10722277-10722296 | None:intergenic | 30.0% |
| ! | TGCTTTGCTATGAAAGATAT+AGG | + | chr6.2:10724183-10724202 | None:intergenic | 30.0% |
| !! | AGAGCAAGATTTTGGAAAAA+TGG | + | chr6.2:10724269-10724288 | None:intergenic | 30.0% |
| !! | ATGTCAAGTTGATCTTTCAA+TGG | + | chr6.2:10721739-10721758 | None:intergenic | 30.0% |
| !! | CTTTATGATCCTTTTAGAGA+AGG | - | chr6.2:10722869-10722888 | MS.gene37195:intron | 30.0% |
| !! | TAAAGGGTGTTGAAAAACAA+TGG | + | chr6.2:10722854-10722873 | None:intergenic | 30.0% |
| !!! | AAGTTTTTCCTTGACTTGTT+TGG | + | chr6.2:10724336-10724355 | None:intergenic | 30.0% |
| AAAACTATTAAGGTTCCACC+TGG | - | chr6.2:10721856-10721875 | MS.gene37195:CDS | 35.0% | |
| AAATCAGCACCTTCTCTAAA+AGG | + | chr6.2:10722881-10722900 | None:intergenic | 35.0% | |
| ACCAAAATATCTCCTTGAAG+AGG | + | chr6.2:10722472-10722491 | None:intergenic | 35.0% | |
| ACCTTGATTTCTTGGAAATG+TGG | - | chr6.2:10721779-10721798 | MS.gene37195:CDS | 35.0% | |
| ACTGTTCTAACCATACCAAA+AGG | - | chr6.2:10723675-10723694 | MS.gene37195:intron | 35.0% | |
| AGTTCATAATCAAAACCAGG+TGG | + | chr6.2:10721874-10721893 | None:intergenic | 35.0% | |
| ATGAGACCAAAATACATAGC+TGG | + | chr6.2:10723756-10723775 | None:intergenic | 35.0% | |
| ATGTGATTACATTCAATCGC+TGG | - | chr6.2:10722578-10722597 | MS.gene37195:intron | 35.0% | |
| ATGTTAGGAACACTCACAAT+CGG | - | chr6.2:10723362-10723381 | MS.gene37195:CDS | 35.0% | |
| CAGGTAATCTGTGATCATTT+GGG | - | chr6.2:10724134-10724153 | MS.gene37195:intron | 35.0% | |
| CGTTATAACACTTCGATTGA+AGG | - | chr6.2:10722528-10722547 | MS.gene37195:intron | 35.0% | |
| CTTTCCTTAGGTTCACAAAT+GGG | + | chr6.2:10724211-10724230 | None:intergenic | 35.0% | |
| GGAACATTATTTCCAATGTG+TGG | - | chr6.2:10723696-10723715 | MS.gene37195:intron | 35.0% | |
| GTATGTAACAATCCTCTTCA+AGG | - | chr6.2:10722457-10722476 | MS.gene37195:CDS | 35.0% | |
| TAAAACCAATGGAACGACTA+AGG | + | chr6.2:10722634-10722653 | None:intergenic | 35.0% | |
| TAATAAGCTTCTTGGTCCTA+GGG | - | chr6.2:10721912-10721931 | MS.gene37195:CDS | 35.0% | |
| TCAGGTAATCTGTGATCATT+TGG | - | chr6.2:10724133-10724152 | MS.gene37195:intron | 35.0% | |
| TCCACATTTCCAAGAAATCA+AGG | + | chr6.2:10721783-10721802 | None:intergenic | 35.0% | |
| TCTGCAAGCTTGTCAAAATA+AGG | + | chr6.2:10724371-10724390 | None:intergenic | 35.0% | |
| TCTTTCCTTAGGTTCACAAA+TGG | + | chr6.2:10724212-10724231 | None:intergenic | 35.0% | |
| TGAAATGTCCAAACAAGTCA+AGG | - | chr6.2:10724325-10724344 | MS.gene37195:CDS | 35.0% | |
| TGCTATGAAAGATATAGGGA+AGG | + | chr6.2:10724178-10724197 | None:intergenic | 35.0% | |
| TTAATAAGCTTCTTGGTCCT+AGG | - | chr6.2:10721911-10721930 | MS.gene37195:CDS | 35.0% | |
| TTGATTTCTTGGAAATGTGG+AGG | - | chr6.2:10721782-10721801 | MS.gene37195:CDS | 35.0% | |
| ! | AACCTAAGGAAAGAGTACAA+AGG | - | chr6.2:10724218-10724237 | MS.gene37195:CDS | 35.0% |
| ! | AAGAGTACAAAGGCATATTC+TGG | - | chr6.2:10724228-10724247 | MS.gene37195:CDS | 35.0% |
| ! | ATTGGACCAGCTATGTATTT+TGG | - | chr6.2:10723747-10723766 | MS.gene37195:intron | 35.0% |
| ! | GTGTTGATGTATAAGGTATG+TGG | - | chr6.2:10723650-10723669 | MS.gene37195:intron | 35.0% |
| ! | TCCTCTTCAAGGAGATATTT+TGG | - | chr6.2:10722468-10722487 | MS.gene37195:CDS | 35.0% |
| ! | TGAACAGTTGTGCATTCTTT+TGG | + | chr6.2:10724293-10724312 | None:intergenic | 35.0% |
| ! | TTGTTTTCCAGATGGATCAT+TGG | + | chr6.2:10722783-10722802 | None:intergenic | 35.0% |
| !! | ATGTACTTTTTGTGTGGCTT+AGG | - | chr6.2:10722754-10722773 | MS.gene37195:intron | 35.0% |
| !! | CTTTTGGAAGAGCAAGATTT+TGG | + | chr6.2:10724277-10724296 | None:intergenic | 35.0% |
| !! | TCAAGTTGATCTTTCAATGG+AGG | + | chr6.2:10721736-10721755 | None:intergenic | 35.0% |
| !!! | AGCTATGTATTTTGGTCTCA+TGG | - | chr6.2:10723755-10723774 | MS.gene37195:intron | 35.0% |
| !!! | GCATTGATTTGTTTTCCAGA+TGG | + | chr6.2:10722791-10722810 | None:intergenic | 35.0% |
| !!! | GCTATGTATTTTGGTCTCAT+GGG | - | chr6.2:10723756-10723775 | MS.gene37195:intron | 35.0% |
| AATGAAATGCAAGAAGCCCT+AGG | + | chr6.2:10721931-10721950 | None:intergenic | 40.0% | |
| ACACCTTCACGAAGACTAAA+AGG | + | chr6.2:10722917-10722936 | None:intergenic | 40.0% | |
| ACCAGAACATGTCTTCAATC+AGG | + | chr6.2:10723907-10723926 | None:intergenic | 40.0% | |
| AGTCCATGAGAAATAGCTGT+TGG | + | chr6.2:10722941-10722960 | None:intergenic | 40.0% | |
| ATGTCATCATAGCGTCCAAT+TGG | + | chr6.2:10723792-10723811 | None:intergenic | 40.0% | |
| CACAATGAGGCCATGAAATA+TGG | + | chr6.2:10722160-10722179 | None:intergenic | 40.0% | |
| CACCTTCACGAAGACTAAAA+GGG | + | chr6.2:10722916-10722935 | None:intergenic | 40.0% | |
| GCATTTGATCGTGATCTGAT+TGG | - | chr6.2:10723729-10723748 | MS.gene37195:intron | 40.0% | |
| GGCTTCTTGCATTTCATTCA+AGG | - | chr6.2:10721933-10721952 | MS.gene37195:CDS | 40.0% | |
| GTAACCCATTTGTGAACCTA+AGG | - | chr6.2:10724204-10724223 | MS.gene37195:CDS | 40.0% | |
| GTCCATGAGAAATAGCTGTT+GGG | + | chr6.2:10722940-10722959 | None:intergenic | 40.0% | |
| TCCAATGTGTGGAATGAACT+TGG | - | chr6.2:10723707-10723726 | MS.gene37195:intron | 40.0% | |
| TCCTGATTGAAGACATGTTC+TGG | - | chr6.2:10723903-10723922 | MS.gene37195:intron | 40.0% | |
| TGCCTTTGTACTCTTTCCTT+AGG | + | chr6.2:10724223-10724242 | None:intergenic | 40.0% | |
| ! | ATCTGTGATCATTTGGGACT+TGG | - | chr6.2:10724140-10724159 | MS.gene37195:CDS | 40.0% |
| ! | ATGTCGTTGCTTTGGTTACA+TGG | - | chr6.2:10721963-10721982 | MS.gene37195:CDS | 40.0% |
| ! | CGCAATTTAAAACCGTGATC+CGG | + | chr6.2:10722235-10722254 | None:intergenic | 40.0% |
| !! | ATGGAGTTGATGGACACAAA+AGG | + | chr6.2:10722835-10722854 | None:intergenic | 40.0% |
| !! | CAGCTATTTCTCATGGACTT+TGG | - | chr6.2:10722942-10722961 | MS.gene37195:intron | 40.0% |
| !! | TACCCTTTTAGTCTTCGTGA+AGG | - | chr6.2:10722911-10722930 | MS.gene37195:intron | 40.0% |
| !! | TATTGAAGGAGTGTTCAGTG+AGG | - | chr6.2:10722604-10722623 | MS.gene37195:intron | 40.0% |
| !! | TCAATCGCTGGTTCTATTGA+AGG | - | chr6.2:10722590-10722609 | MS.gene37195:intron | 40.0% |
| !! | TGAGTAGGAGCATCATAATC+TGG | + | chr6.2:10722977-10722996 | None:intergenic | 40.0% |
| !!! | ACGGTTTTAAATAGCGGTCA+CGG | - | chr6.2:10723077-10723096 | MS.gene37195:intron | 40.0% |
| !!! | ACGGTTTTAAATTGCGGTTG+CGG | - | chr6.2:10722239-10722258 | MS.gene37195:intron | 40.0% |
| !!! | CGGATCACGGTTTTAAATTG+CGG | - | chr6.2:10722233-10722252 | MS.gene37195:intron | 40.0% |
| !!! | TATTTTGGTCTCATGGGAGA+TGG | - | chr6.2:10723762-10723781 | MS.gene37195:intron | 40.0% |
| AACCAATGGAACGACTAAGG+AGG | + | chr6.2:10722631-10722650 | None:intergenic | 45.0% | |
| ACACTGCACGCCTTTACATT+AGG | - | chr6.2:10722264-10722283 | MS.gene37195:intron | 45.0% | |
| ACCAATGGAACGACTAAGGA+GGG | + | chr6.2:10722630-10722649 | None:intergenic | 45.0% | |
| ATGTGGTTGCGAACGGAATT+CGG | - | chr6.2:10722314-10722333 | MS.gene37195:intron | 45.0% | |
| CACTGCACGCCTTTACATTA+GGG | - | chr6.2:10722265-10722284 | MS.gene37195:intron | 45.0% | |
| GCCAAGTTCATTCCACACAT+TGG | + | chr6.2:10723711-10723730 | None:intergenic | 45.0% | |
| GGCAAATGTGGTCGTATATG+TGG | - | chr6.2:10722297-10722316 | MS.gene37195:intron | 45.0% | |
| GGGTAAAATGCAGGCAAATG+TGG | - | chr6.2:10722285-10722304 | MS.gene37195:intron | 45.0% | |
| GGTCACTTGGATTGAAGCTT+GGG | - | chr6.2:10724397-10724416 | MS.gene37195:CDS | 45.0% | |
| GTCGTATATGTGGTTGCGAA+CGG | - | chr6.2:10722307-10722326 | MS.gene37195:intron | 45.0% | |
| TACCTAGTGTTCCTCTCAAG+AGG | + | chr6.2:10723010-10723029 | None:intergenic | 45.0% | |
| TAGGTTGCCAATGATCCATC+TGG | - | chr6.2:10722773-10722792 | MS.gene37195:intron | 45.0% | |
| TGACAAGCTTGCAGATGCTA+TGG | - | chr6.2:10724376-10724395 | MS.gene37195:CDS | 45.0% | |
| TGGACGCTATGATGACATGT+GGG | - | chr6.2:10723794-10723813 | MS.gene37195:intron | 45.0% | |
| TGGTCACTTGGATTGAAGCT+TGG | - | chr6.2:10724396-10724415 | MS.gene37195:CDS | 45.0% | |
| TTGCAGATGCTATGGTCACT+TGG | - | chr6.2:10724384-10724403 | MS.gene37195:CDS | 45.0% | |
| TTGGACGCTATGATGACATG+TGG | - | chr6.2:10723793-10723812 | MS.gene37195:intron | 45.0% | |
| TTGGGACTTGGAATCAAGAC+TGG | - | chr6.2:10724152-10724171 | MS.gene37195:CDS | 45.0% | |
| ! | GTACAAAGGCATATTCTGGC+AGG | - | chr6.2:10724232-10724251 | MS.gene37195:CDS | 45.0% |
| !! | CACAAGTGTCGATGTCATGT+CGG | + | chr6.2:10723938-10723957 | None:intergenic | 45.0% |
| !! | GTCCCAACAGCTATTTCTCA+TGG | - | chr6.2:10722935-10722954 | MS.gene37195:intron | 45.0% |
| !!! | GAAGGTGCTGATTTTGTTCG+TGG | - | chr6.2:10722887-10722906 | MS.gene37195:intron | 45.0% |
| !!! | TATTTATTTATTTTTTTCTT+AGG | - | chr6.2:10723223-10723242 | MS.gene37195:CDS | 5.0% |
| AGAGGCTTGACAAGCTGAGT+AGG | + | chr6.2:10722992-10723011 | None:intergenic | 50.0% | |
| AGCCTCTTGAGAGGAACACT+AGG | - | chr6.2:10723005-10723024 | MS.gene37195:intron | 50.0% | |
| AGCTTGTCAAGCCTCTTGAG+AGG | - | chr6.2:10722996-10723015 | MS.gene37195:intron | 50.0% | |
| ATGGGAGATGGTCAGCCAAT+TGG | - | chr6.2:10723774-10723793 | MS.gene37195:intron | 50.0% | |
| GACTCTGCATGTCGTTGCTT+TGG | - | chr6.2:10721955-10721974 | MS.gene37195:CDS | 50.0% | |
| GGATATTGCGTTCCGGATCA+CGG | - | chr6.2:10722220-10722239 | MS.gene37195:intron | 50.0% | |
| CGCTATGATGACATGTGGGC+TGG | - | chr6.2:10723798-10723817 | MS.gene37195:intron | 55.0% | |
| GCCCTCCTTAGTCGTTCCAT+TGG | - | chr6.2:10722626-10722645 | MS.gene37195:intron | 55.0% | |
| TCCGTGTCAGTGTCGTGTCT+GGG | - | chr6.2:10724007-10724026 | MS.gene37195:intron | 55.0% | |
| !! | ATGATGACATGTGGGCTGGC+TGG | - | chr6.2:10723802-10723821 | MS.gene37195:intron | 55.0% |
| GCCCAGACACGACACTGACA+CGG | + | chr6.2:10724011-10724030 | None:intergenic | 60.0% | |
| GTCCGTGTCAGTGTCGTGTC+TGG | - | chr6.2:10724006-10724025 | MS.gene37195:intron | 60.0% | |
| !! | GTGGGCTGGCTGGTGCTGCA+AGG | - | chr6.2:10723812-10723831 | MS.gene37195:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 10721718 | 10724448 | 10721718 | ID=MS.gene37195 |
| chr6.2 | mRNA | 10721718 | 10724448 | 10721718 | ID=MS.gene37195.t1;Parent=MS.gene37195 |
| chr6.2 | exon | 10724137 | 10724448 | 10724137 | ID=MS.gene37195.t1.exon1;Parent=MS.gene37195.t1 |
| chr6.2 | CDS | 10724137 | 10724448 | 10724137 | ID=cds.MS.gene37195.t1;Parent=MS.gene37195.t1 |
| chr6.2 | exon | 10723140 | 10723390 | 10723140 | ID=MS.gene37195.t1.exon2;Parent=MS.gene37195.t1 |
| chr6.2 | CDS | 10723140 | 10723390 | 10723140 | ID=cds.MS.gene37195.t1;Parent=MS.gene37195.t1 |
| chr6.2 | exon | 10722333 | 10722501 | 10722333 | ID=MS.gene37195.t1.exon3;Parent=MS.gene37195.t1 |
| chr6.2 | CDS | 10722333 | 10722501 | 10722333 | ID=cds.MS.gene37195.t1;Parent=MS.gene37195.t1 |
| chr6.2 | exon | 10721718 | 10722029 | 10721718 | ID=MS.gene37195.t1.exon4;Parent=MS.gene37195.t1 |
| chr6.2 | CDS | 10721718 | 10722029 | 10721718 | ID=cds.MS.gene37195.t1;Parent=MS.gene37195.t1 |
| Gene Sequence |
| Protein sequence |
