Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37474.t1 | XP_013461794.1 | 97.1 | 522 | 15 | 0 | 34 | 555 | 33 | 554 | 4.60E-293 | 1016.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37474.t1 | O04472 | 63.5 | 521 | 180 | 3 | 43 | 554 | 21 | 540 | 7.9e-201 | 701.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37474.t1 | A0A072V1F4 | 97.1 | 522 | 15 | 0 | 34 | 555 | 33 | 554 | 3.3e-293 | 1016.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37474 | MS.gene43290 | PPI |
| MS.gene37474 | MS.gene56947 | PPI |
| MS.gene37474 | MS.gene71606 | PPI |
| MS.gene37474 | MS.gene25932 | PPI |
| MS.gene37474 | MS.gene86930 | PPI |
| MS.gene37474 | MS.gene022275 | PPI |
| MS.gene37474 | MS.gene074377 | PPI |
| MS.gene37474 | MS.gene033221 | PPI |
| MS.gene37474 | MS.gene60344 | PPI |
| MS.gene37474 | MS.gene70604 | PPI |
| MS.gene37474 | MS.gene96701 | PPI |
| MS.gene37474 | MS.gene91317 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37474.t1 | MTR_3g103230 | 97.117 | 555 | 15 | 1 | 1 | 555 | 1 | 554 | 0.0 | 1106 |
| MS.gene37474.t1 | MTR_5g022110 | 73.514 | 555 | 139 | 1 | 1 | 555 | 1 | 547 | 0.0 | 835 |
| MS.gene37474.t1 | MTR_8g063220 | 61.568 | 523 | 196 | 2 | 36 | 555 | 13 | 533 | 0.0 | 680 |
| MS.gene37474.t1 | MTR_3g078270 | 58.456 | 544 | 210 | 3 | 15 | 555 | 2 | 532 | 0.0 | 666 |
| MS.gene37474.t1 | MTR_4g106750 | 58.667 | 525 | 214 | 1 | 34 | 555 | 8 | 532 | 0.0 | 650 |
| MS.gene37474.t1 | MTR_5g035180 | 57.143 | 525 | 220 | 3 | 35 | 555 | 15 | 538 | 0.0 | 636 |
| MS.gene37474.t1 | MTR_1g106085 | 58.252 | 515 | 209 | 3 | 43 | 554 | 15 | 526 | 0.0 | 615 |
| MS.gene37474.t1 | MTR_4g106750 | 58.299 | 482 | 198 | 1 | 77 | 555 | 2 | 483 | 0.0 | 586 |
| MS.gene37474.t1 | MTR_8g086520 | 53.089 | 518 | 234 | 4 | 41 | 553 | 9 | 522 | 0.0 | 573 |
| MS.gene37474.t1 | MTR_2g016460 | 53.065 | 522 | 238 | 3 | 35 | 553 | 5 | 522 | 0.0 | 571 |
| MS.gene37474.t1 | MTR_3g080390 | 51.451 | 517 | 245 | 3 | 41 | 553 | 4 | 518 | 0.0 | 547 |
| MS.gene37474.t1 | MTR_8g086520 | 54.649 | 441 | 198 | 2 | 41 | 481 | 9 | 447 | 1.38e-178 | 512 |
| MS.gene37474.t1 | MTR_1g021120 | 49.808 | 520 | 251 | 4 | 40 | 554 | 32 | 546 | 7.21e-173 | 500 |
| MS.gene37474.t1 | MTR_8g086520 | 54.847 | 392 | 177 | 0 | 41 | 432 | 9 | 400 | 1.20e-160 | 464 |
| MS.gene37474.t1 | MTR_4g106750 | 58.421 | 380 | 152 | 2 | 182 | 555 | 1 | 380 | 1.07e-158 | 458 |
| MS.gene37474.t1 | MTR_8g086520 | 53.333 | 405 | 180 | 4 | 154 | 553 | 6 | 406 | 6.38e-152 | 442 |
| MS.gene37474.t1 | MTR_2g084895 | 33.589 | 521 | 303 | 6 | 69 | 552 | 164 | 678 | 5.46e-92 | 296 |
| MS.gene37474.t1 | MTR_8g068550 | 33.141 | 519 | 304 | 8 | 70 | 552 | 244 | 755 | 1.02e-90 | 295 |
| MS.gene37474.t1 | MTR_5g032020 | 34.496 | 516 | 295 | 8 | 69 | 548 | 185 | 693 | 4.69e-89 | 289 |
| MS.gene37474.t1 | MTR_2g103510 | 29.875 | 559 | 339 | 11 | 20 | 552 | 60 | 591 | 9.38e-85 | 275 |
| MS.gene37474.t1 | MTR_4g055290 | 32.054 | 521 | 306 | 7 | 69 | 552 | 171 | 680 | 1.51e-82 | 271 |
| MS.gene37474.t1 | MTR_8g086535 | 63.636 | 99 | 36 | 0 | 334 | 432 | 18 | 116 | 3.41e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37474.t1 | AT1G65550 | 62.949 | 529 | 185 | 4 | 35 | 554 | 14 | 540 | 0.0 | 726 |
| MS.gene37474.t1 | AT5G62890 | 59.429 | 525 | 210 | 1 | 34 | 555 | 8 | 532 | 0.0 | 660 |
| MS.gene37474.t1 | AT5G62890 | 59.429 | 525 | 210 | 1 | 34 | 555 | 8 | 532 | 0.0 | 660 |
| MS.gene37474.t1 | AT5G62890 | 59.429 | 525 | 210 | 1 | 34 | 555 | 8 | 532 | 0.0 | 660 |
| MS.gene37474.t1 | AT1G60030 | 59.302 | 516 | 207 | 1 | 43 | 555 | 23 | 538 | 0.0 | 653 |
| MS.gene37474.t1 | AT5G49990 | 58.960 | 519 | 210 | 1 | 40 | 555 | 10 | 528 | 0.0 | 625 |
| MS.gene37474.t1 | AT5G49990 | 58.960 | 519 | 210 | 1 | 40 | 555 | 10 | 528 | 0.0 | 625 |
| MS.gene37474.t1 | AT5G49990 | 58.960 | 519 | 210 | 1 | 40 | 555 | 10 | 528 | 0.0 | 625 |
| MS.gene37474.t1 | AT5G49990 | 58.960 | 519 | 210 | 1 | 40 | 555 | 10 | 528 | 0.0 | 625 |
| MS.gene37474.t1 | AT1G10540 | 54.679 | 545 | 231 | 5 | 18 | 554 | 2 | 538 | 0.0 | 613 |
| MS.gene37474.t1 | AT1G49960 | 57.004 | 514 | 218 | 1 | 44 | 554 | 12 | 525 | 0.0 | 595 |
| MS.gene37474.t1 | AT5G62890 | 61.148 | 453 | 173 | 1 | 34 | 483 | 8 | 460 | 0.0 | 585 |
| MS.gene37474.t1 | AT2G34190 | 52.682 | 522 | 240 | 3 | 35 | 553 | 5 | 522 | 0.0 | 572 |
| MS.gene37474.t1 | AT2G05760 | 49.710 | 517 | 254 | 3 | 41 | 553 | 4 | 518 | 0.0 | 539 |
| MS.gene37474.t1 | AT5G25420 | 54.831 | 445 | 120 | 5 | 35 | 473 | 26 | 395 | 3.50e-167 | 481 |
| MS.gene37474.t1 | AT2G26510 | 47.810 | 525 | 266 | 3 | 34 | 553 | 26 | 547 | 2.63e-166 | 484 |
| MS.gene37474.t1 | AT1G10540 | 54.962 | 393 | 168 | 3 | 18 | 407 | 2 | 388 | 8.21e-154 | 446 |
| MS.gene37474.t1 | AT2G26510 | 49.451 | 364 | 184 | 0 | 44 | 407 | 36 | 399 | 6.72e-117 | 352 |
| MS.gene37474.t1 | AT2G26510 | 48.718 | 351 | 180 | 0 | 44 | 394 | 36 | 386 | 1.81e-109 | 334 |
| MS.gene37474.t1 | AT2G27810 | 30.000 | 590 | 362 | 10 | 1 | 552 | 125 | 701 | 1.33e-78 | 261 |
| MS.gene37474.t1 | AT2G27810 | 28.874 | 613 | 363 | 9 | 1 | 552 | 125 | 725 | 1.45e-76 | 256 |
| MS.gene37474.t1 | AT4G38050 | 31.308 | 543 | 318 | 8 | 52 | 552 | 175 | 704 | 1.93e-76 | 256 |
| MS.gene37474.t1 | AT2G27810 | 31.712 | 473 | 297 | 5 | 1 | 455 | 125 | 589 | 4.44e-70 | 236 |
| MS.gene37474.t1 | AT2G27810 | 31.690 | 426 | 265 | 5 | 1 | 408 | 125 | 542 | 2.77e-60 | 209 |
Find 134 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTTGGTTGCTTTCATTT+TGG | 0.169248 | 3.4:+90864317 | MS.gene37474:CDS |
| ACATTTCTTCAATCTTTATT+TGG | 0.205778 | 3.4:+90861986 | MS.gene37474:CDS |
| CAGAGTACGTTGTTTGTTTC+CGG | 0.207698 | 3.4:+90861956 | MS.gene37474:CDS |
| TTATGGGATTCTTGGGATTA+TGG | 0.208045 | 3.4:+90862289 | MS.gene37474:CDS |
| TTTCAGAACCAAATTTGTTT+TGG | 0.241303 | 3.4:+90864055 | MS.gene37474:CDS |
| TGAGAAGCCCAAAACAAATT+TGG | 0.250863 | 3.4:-90864063 | None:intergenic |
| GCATTATACTGTGTATTCTT+TGG | 0.261773 | 3.4:+90863877 | MS.gene37474:CDS |
| CCAAATGGTTATGGGATTCT+TGG | 0.270090 | 3.4:+90862281 | MS.gene37474:CDS |
| TCATAAAACCAGCTGATATC+TGG | 0.294816 | 3.4:-90863607 | None:intergenic |
| GGCATGTTTGGTTCTGTAAC+AGG | 0.296118 | 3.4:+90863437 | MS.gene37474:CDS |
| TCTTTGCTCAATGGCATGTT+TGG | 0.302794 | 3.4:+90863425 | MS.gene37474:CDS |
| GTTAGAAGCAATGAATTCTA+TGG | 0.305839 | 3.4:+90864426 | MS.gene37474:CDS |
| GCTTGAACAGCTGACATAAT+TGG | 0.308881 | 3.4:-90862055 | None:intergenic |
| GGAAGTCCTACCTTCAACTA+TGG | 0.318637 | 3.4:+90863084 | MS.gene37474:CDS |
| TGCATGTTTCCAAATGGTTA+TGG | 0.320849 | 3.4:+90862272 | MS.gene37474:CDS |
| AACTATTGAGATTACAGAAT+TGG | 0.325604 | 3.4:-90864034 | None:intergenic |
| AACTATAGTTGTTCCTCAAA+TGG | 0.329633 | 3.4:+90861794 | MS.gene37474:CDS |
| GCTTCCAGCACTACTTGTTA+TGG | 0.334174 | 3.4:+90862588 | MS.gene37474:CDS |
| CAGGGAAAACGCTGGACTAT+TGG | 0.360278 | 3.4:+90863553 | MS.gene37474:intron |
| TATGCAGCTTCTGCAGGTCT+TGG | 0.365022 | 3.4:+90864005 | MS.gene37474:intron |
| GCATGTTTCCAAATGGTTAT+GGG | 0.366673 | 3.4:+90862273 | MS.gene37474:CDS |
| GGACTTGGTCTCTATCATCT+TGG | 0.375669 | 3.4:+90862369 | MS.gene37474:CDS |
| CAAATGGTTATGGGATTCTT+GGG | 0.379964 | 3.4:+90862282 | MS.gene37474:CDS |
| TGGGAGAAGTTCAGTATCTA+TGG | 0.388930 | 3.4:+90864396 | MS.gene37474:CDS |
| CCAGGTAATTGCTCTTTAGC+TGG | 0.392454 | 3.4:-90861479 | None:intergenic |
| TCTGTTATCAGCCGCGGAAC+TGG | 0.392882 | 3.4:+90863295 | MS.gene37474:CDS |
| TCTTTAGCTGGGTGTGCTAC+TGG | 0.394583 | 3.4:-90861467 | None:intergenic |
| TTCCATACCTTTGCCAATCA+TGG | 0.396450 | 3.4:+90863852 | MS.gene37474:CDS |
| AGGAACATGCAGGTCCTAGA+TGG | 0.397588 | 3.4:+90864141 | MS.gene37474:CDS |
| CGCCAAAGAGACTGGTTAAA+GGG | 0.402830 | 3.4:-90864481 | None:intergenic |
| ACACACAATGGTGGCTGCCT+TGG | 0.409130 | 3.4:+90864302 | MS.gene37474:CDS |
| CAGTATAATGCTGCCATGAT+TGG | 0.416838 | 3.4:-90863865 | None:intergenic |
| GAGATTCACTCAGACAATTA+CGG | 0.420412 | 3.4:+90862224 | MS.gene37474:intron |
| CAGCATTACATTCTGACTCT+TGG | 0.422869 | 3.4:+90861753 | MS.gene37474:CDS |
| CTGATATCTGGATGACTCTT+CGG | 0.422907 | 3.4:-90863595 | None:intergenic |
| CCAAGAATCCCATAACCATT+TGG | 0.423135 | 3.4:-90862281 | None:intergenic |
| CGATTGCCAACTGTAGTTGT+TGG | 0.425209 | 3.4:+90862013 | MS.gene37474:CDS |
| CAACAACTACAGTTGGCAAT+CGG | 0.429632 | 3.4:-90862012 | None:intergenic |
| GTCCCTTATGTAACATTCAC+TGG | 0.434961 | 3.4:+90862348 | MS.gene37474:CDS |
| TGAATATTATCAAGTAAAAC+AGG | 0.437037 | 3.4:+90864121 | MS.gene37474:CDS |
| AGATTCACTCAGACAATTAC+GGG | 0.439047 | 3.4:+90862225 | MS.gene37474:CDS |
| ATTTGAGGAACAACTATAGT+TGG | 0.440677 | 3.4:-90861792 | None:intergenic |
| AAGTACACATCGACCTCATA+AGG | 0.441893 | 3.4:-90862103 | None:intergenic |
| CACGGGCTGCATCATCTTCA+CGG | 0.441998 | 3.4:-90864353 | None:intergenic |
| AAAAGTTTCCCCATAGTTGA+AGG | 0.447309 | 3.4:-90863094 | None:intergenic |
| TTGGGCTTCTCATTCTTCCT+CGG | 0.448057 | 3.4:+90864074 | MS.gene37474:CDS |
| GGAGTAGCTTCTTTGCTCAA+TGG | 0.454916 | 3.4:+90863416 | MS.gene37474:CDS |
| CATATTTGCATGTAGTCTAC+TGG | 0.455099 | 3.4:+90863223 | MS.gene37474:intron |
| GAAACATGCACTTATAATCA+AGG | 0.460770 | 3.4:-90862259 | None:intergenic |
| ACATTGTTTCCACCCATTTG+AGG | 0.466873 | 3.4:-90861807 | None:intergenic |
| TCAGATAATCTCACCCATCT+AGG | 0.467136 | 3.4:-90864155 | None:intergenic |
| CTTCCCCATTGAAAAGGATA+AGG | 0.469030 | 3.4:-90863066 | None:intergenic |
| ACTATAGTTGTTCCTCAAAT+GGG | 0.470243 | 3.4:+90861795 | MS.gene37474:CDS |
| GTCTTATTAGTTCTGCTCCA+TGG | 0.472828 | 3.4:+90862873 | MS.gene37474:CDS |
| AGTCCAGTGAATGTTACATA+AGG | 0.473008 | 3.4:-90862351 | None:intergenic |
| TTATCAGCCGCGGAACTGGC+TGG | 0.474227 | 3.4:+90863299 | MS.gene37474:CDS |
| CTGGCAACATGTGTTGAAGT+TGG | 0.474802 | 3.4:+90862565 | MS.gene37474:CDS |
| GGAAATAATGCTGGCGGTGG+CGG | 0.475933 | 3.4:+90861383 | MS.gene37474:CDS |
| AATGCTGGCGGTGGCGGTGA+TGG | 0.476328 | 3.4:+90861389 | MS.gene37474:CDS |
| AAAGAGACTGGTTAAAGGGC+TGG | 0.481224 | 3.4:-90864477 | None:intergenic |
| TATAAGTGCATGTTTCCAAA+TGG | 0.482279 | 3.4:+90862266 | MS.gene37474:CDS |
| TTGGGATATGCAGCTTCTGC+AGG | 0.486729 | 3.4:+90863999 | MS.gene37474:intron |
| CAGCCGCGGAACTGGCTGGC+TGG | 0.489535 | 3.4:+90863303 | MS.gene37474:CDS |
| TTGAAGAAATGTGCTTAGTC+CGG | 0.498808 | 3.4:-90861975 | None:intergenic |
| CAACATATGGCTCAAAATGA+AGG | 0.499264 | 3.4:+90861344 | None:intergenic |
| GAAGGTGGAGATGGTGGGAA+TGG | 0.499508 | 3.4:+90861362 | MS.gene37474:CDS |
| AACAACTACAGTTGGCAATC+GGG | 0.501292 | 3.4:-90862011 | None:intergenic |
| GAAGTCCTACCTTCAACTAT+GGG | 0.504820 | 3.4:+90863085 | MS.gene37474:CDS |
| TGGCAACATGTGTTGAAGTT+GGG | 0.508157 | 3.4:+90862566 | MS.gene37474:CDS |
| GTAGGACTTCCCCATTGAAA+AGG | 0.513415 | 3.4:-90863072 | None:intergenic |
| CAGACAATTACGGGAATACA+AGG | 0.519299 | 3.4:+90862234 | MS.gene37474:CDS |
| AAAACCATAACAAGTAGTGC+TGG | 0.520610 | 3.4:-90862592 | None:intergenic |
| TGGAAAACAAAACTGCAAAT+CGG | 0.523327 | 3.4:-90862751 | None:intergenic |
| GTCCAGTGAATGTTACATAA+GGG | 0.527838 | 3.4:-90862350 | None:intergenic |
| GCTGGCGGTGGCGGTGATGG+CGG | 0.532310 | 3.4:+90861392 | MS.gene37474:CDS |
| CAAAATGAAGGTGGAGATGG+TGG | 0.533623 | 3.4:+90861356 | MS.gene37474:CDS |
| CAGGTAATTGCTCTTTAGCT+GGG | 0.537966 | 3.4:-90861478 | None:intergenic |
| TATGTAACATTCACTGGACT+TGG | 0.538442 | 3.4:+90862354 | MS.gene37474:CDS |
| ACTGCAAATCGGTCAAATGT+AGG | 0.543952 | 3.4:-90862740 | None:intergenic |
| GATTATGGAGAAATGCTGTC+AGG | 0.547810 | 3.4:+90862304 | MS.gene37474:CDS |
| TGTTTCAACTCAGTTGGAGA+AGG | 0.550204 | 3.4:+90861922 | MS.gene37474:intron |
| ATTTCAATCCACTGTCATCA+CGG | 0.551720 | 3.4:-90864371 | None:intergenic |
| GGTGGGAATGGAAATAATGC+TGG | 0.552918 | 3.4:+90861374 | MS.gene37474:CDS |
| CTGATAACAGAAGGTGGCAC+GGG | 0.553647 | 3.4:-90863283 | None:intergenic |
| AAATACTAACGCCAAGGTGG+AGG | 0.555562 | 3.4:-90861524 | None:intergenic |
| AGAGTCATCCAGATATCAGC+TGG | 0.558329 | 3.4:+90863599 | MS.gene37474:CDS |
| GTTTCCCCATAGTTGAAGGT+AGG | 0.565886 | 3.4:-90863090 | None:intergenic |
| GGAACATGCAGGTCCTAGAT+GGG | 0.568067 | 3.4:+90864142 | MS.gene37474:CDS |
| AGTTGCCGCACTGACCGTGC+TGG | 0.569095 | 3.4:+90862851 | MS.gene37474:CDS |
| AACTCAGTTGGAGAAGGCCA+AGG | 0.569555 | 3.4:+90861928 | MS.gene37474:intron |
| TTTCAATCCACTGTCATCAC+GGG | 0.569622 | 3.4:-90864370 | None:intergenic |
| GGACAACACAAAGTGGGCTA+AGG | 0.572132 | 3.4:-90862329 | None:intergenic |
| ACGGGCTGCATCATCTTCAC+GGG | 0.573702 | 3.4:-90864352 | None:intergenic |
| TGCCATGATTGGCAAAGGTA+TGG | 0.573927 | 3.4:-90863854 | None:intergenic |
| CAAGTAAAACAGGAACATGC+AGG | 0.574966 | 3.4:+90864131 | MS.gene37474:CDS |
| TTCATATACAGATCCTTATG+AGG | 0.584344 | 3.4:+90862090 | MS.gene37474:CDS |
| CTATTGGCATTGACAAGAGT+GGG | 0.584625 | 3.4:+90863569 | MS.gene37474:CDS |
| CAAGAGTCAGAATGTAATGC+TGG | 0.586166 | 3.4:-90861752 | None:intergenic |
| CCAGCTAAAGAGCAATTACC+TGG | 0.592250 | 3.4:+90861479 | MS.gene37474:CDS |
| ATAGTTGTTCCTCAAATGGG+TGG | 0.593855 | 3.4:+90861798 | MS.gene37474:CDS |
| ACTATTGGCATTGACAAGAG+TGG | 0.602157 | 3.4:+90863568 | MS.gene37474:CDS |
| AATGGAAATAATGCTGGCGG+TGG | 0.605700 | 3.4:+90861380 | MS.gene37474:CDS |
| GCTCAAAATGAAGGTGGAGA+TGG | 0.606475 | 3.4:+90861353 | MS.gene37474:CDS |
| AAATAACCATGCACTTGCAA+TGG | 0.607464 | 3.4:-90862771 | None:intergenic |
| CAACGTACTCTGAATCACCT+TGG | 0.609774 | 3.4:-90861945 | None:intergenic |
| GCTGATAACAGAAGGTGGCA+CGG | 0.610840 | 3.4:-90863284 | None:intergenic |
| ATGACAGTGGATTGAAATGG+TGG | 0.613573 | 3.4:+90864376 | MS.gene37474:CDS |
| CATATTCGCTTCACACACAA+TGG | 0.614250 | 3.4:+90864290 | MS.gene37474:CDS |
| AATGCTGCCATGATTGGCAA+AGG | 0.615074 | 3.4:-90863859 | None:intergenic |
| GCATAAATAGTCCTCCACCT+TGG | 0.616612 | 3.4:+90861513 | MS.gene37474:CDS |
| TAATATTCAGTGAAATATTG+CGG | 0.617054 | 3.4:-90864107 | None:intergenic |
| CCACCTTCTGTTATCAGCCG+CGG | 0.618128 | 3.4:+90863289 | MS.gene37474:CDS |
| TATGAACCAACAACTACAGT+TGG | 0.620524 | 3.4:-90862019 | None:intergenic |
| ACATAAGGGACAACACAAAG+TGG | 0.621509 | 3.4:-90862336 | None:intergenic |
| CTATCATCTTGGTTTCCCTG+TGG | 0.623629 | 3.4:+90862380 | MS.gene37474:CDS |
| GTGATGACAGTGGATTGAAA+TGG | 0.630250 | 3.4:+90864373 | MS.gene37474:CDS |
| TTTATGCAATATTGAACACC+AGG | 0.630678 | 3.4:-90861497 | None:intergenic |
| ATCCAAAATGAAAGCAACCA+AGG | 0.632215 | 3.4:-90864319 | None:intergenic |
| GTTCCGCGGCTGATAACAGA+AGG | 0.632250 | 3.4:-90863292 | None:intergenic |
| CATATGGCTCAAAATGAAGG+TGG | 0.633129 | 3.4:+90861347 | None:intergenic |
| TGAAAATACTAACGCCAAGG+TGG | 0.634498 | 3.4:-90861527 | None:intergenic |
| CATAAGGGACAACACAAAGT+GGG | 0.647050 | 3.4:-90862335 | None:intergenic |
| TTACCAGCCAGCCAGTTCCG+CGG | 0.648530 | 3.4:-90863306 | None:intergenic |
| TGACAGTGGATTGAAATGGT+GGG | 0.657332 | 3.4:+90864377 | MS.gene37474:CDS |
| CCGCGGCTGATAACAGAAGG+TGG | 0.657716 | 3.4:-90863289 | None:intergenic |
| GCTTATTTCAGGGAAAACGC+TGG | 0.661694 | 3.4:+90863545 | MS.gene37474:intron |
| ATTCGCTTCACACACAATGG+TGG | 0.666772 | 3.4:+90864293 | MS.gene37474:CDS |
| AAAATGAAGGTGGAGATGGT+GGG | 0.674832 | 3.4:+90861357 | MS.gene37474:CDS |
| GATGCAGCCCGTGATGACAG+TGG | 0.686042 | 3.4:+90864363 | MS.gene37474:CDS |
| AAGTCCTACCTTCAACTATG+GGG | 0.694616 | 3.4:+90863086 | MS.gene37474:CDS |
| TAAGACCAGCACGGTCAGTG+CGG | 0.712401 | 3.4:-90862856 | None:intergenic |
| GGGAATGGAAATAATGCTGG+CGG | 0.720922 | 3.4:+90861377 | MS.gene37474:CDS |
| CAGAACTAATAAGACCAGCA+CGG | 0.727218 | 3.4:-90862865 | None:intergenic |
| ATTGCGGTATTGAGACACCG+AGG | 0.806570 | 3.4:-90864091 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAATTAAAAAAGTTG+AGG | - | chr3.4:90861694-90861713 | None:intergenic | 15.0% |
| !! | AATCAAAACAAAAAATATTG+TGG | - | chr3.4:90863184-90863203 | None:intergenic | 15.0% |
| !! | AGAATAACAACATTAAAAAT+AGG | - | chr3.4:90863769-90863788 | None:intergenic | 15.0% |
| !! | TTTGTATTATAAGCTATAAA+CGG | + | chr3.4:90862964-90862983 | MS.gene37474:intron | 15.0% |
| !!! | GATTTATTTTTCTTAAATTC+TGG | + | chr3.4:90862650-90862669 | MS.gene37474:intron | 15.0% |
| !! | AATCAGCATTAAAATAAACA+TGG | - | chr3.4:90862178-90862197 | None:intergenic | 20.0% |
| !! | ACAGTGATTGAAAAAATTAA+AGG | - | chr3.4:90862540-90862559 | None:intergenic | 20.0% |
| !! | ACATTTCTTCAATCTTTATT+TGG | + | chr3.4:90861986-90862005 | MS.gene37474:CDS | 20.0% |
| !! | AGTGATTGAAAAAATTAAAG+GGG | - | chr3.4:90862538-90862557 | None:intergenic | 20.0% |
| !! | CAGTGATTGAAAAAATTAAA+GGG | - | chr3.4:90862539-90862558 | None:intergenic | 20.0% |
| !! | TAATATTCAGTGAAATATTG+CGG | - | chr3.4:90864110-90864129 | None:intergenic | 20.0% |
| !! | TACAAAATTCGATTCAAAAA+AGG | - | chr3.4:90862950-90862969 | None:intergenic | 20.0% |
| !! | TGAAAATGCATTGAAAAATT+AGG | - | chr3.4:90864249-90864268 | None:intergenic | 20.0% |
| !! | TGAATATTATCAAGTAAAAC+AGG | + | chr3.4:90864121-90864140 | MS.gene37474:CDS | 20.0% |
| !!! | ATGATTTTCTTTTCTGTATT+TGG | + | chr3.4:90863626-90863645 | MS.gene37474:CDS | 20.0% |
| !!! | CATTATCTTTGTAAGATTTT+TGG | + | chr3.4:90863925-90863944 | MS.gene37474:intron | 20.0% |
| ! | AACTATTGAGATTACAGAAT+TGG | - | chr3.4:90864037-90864056 | None:intergenic | 25.0% |
| ! | AATTCAGCTTCTATAAGTTA+AGG | + | chr3.4:90862476-90862495 | MS.gene37474:intron | 25.0% |
| ! | ACTTATGATTGAATTTCATG+TGG | + | chr3.4:90863373-90863392 | MS.gene37474:intron | 25.0% |
| ! | ATTGATTGCGTTATTTATAC+AGG | + | chr3.4:90863034-90863053 | MS.gene37474:intron | 25.0% |
| ! | CTACACTTTGTAATTATTTC+TGG | + | chr3.4:90863335-90863354 | MS.gene37474:intron | 25.0% |
| ! | TGAAATCATTTCACATTTGT+CGG | - | chr3.4:90861606-90861625 | None:intergenic | 25.0% |
| ! | TGACAAGATTTATGTAACTT+GGG | + | chr3.4:90863981-90864000 | MS.gene37474:intron | 25.0% |
| ! | TTCAGATTTGACATTTCTAA+AGG | + | chr3.4:90863736-90863755 | MS.gene37474:intron | 25.0% |
| ! | TTGACAAGATTTATGTAACT+TGG | + | chr3.4:90863980-90863999 | MS.gene37474:intron | 25.0% |
| ! | TTGATTGCGTTATTTATACA+GGG | + | chr3.4:90863035-90863054 | MS.gene37474:intron | 25.0% |
| !! | ATCACGAAATTTTCAACAAT+TGG | - | chr3.4:90864188-90864207 | None:intergenic | 25.0% |
| !! | ATTTTCCTTATCCTTTTCAA+TGG | + | chr3.4:90863061-90863080 | MS.gene37474:CDS | 25.0% |
| !! | TTTTATGACAAAGAGATATG+AGG | - | chr3.4:90863487-90863506 | None:intergenic | 25.0% |
| !! | TTTTCCTTATCCTTTTCAAT+GGG | + | chr3.4:90863062-90863081 | MS.gene37474:CDS | 25.0% |
| !! | TTTTCTGTATTTGGTATGAT+AGG | + | chr3.4:90863635-90863654 | MS.gene37474:intron | 25.0% |
| !!! | ATGCTGATTTGATTCATATA+TGG | + | chr3.4:90862189-90862208 | MS.gene37474:intron | 25.0% |
| !!! | GCATTATGTTTGTTTGTTTT+TGG | + | chr3.4:90861634-90861653 | MS.gene37474:intron | 25.0% |
| !!! | TCTTTGTAAGATTTTTGGTT+AGG | + | chr3.4:90863930-90863949 | MS.gene37474:intron | 25.0% |
| !!! | TGCTGATTTGATTCATATAT+GGG | + | chr3.4:90862190-90862209 | MS.gene37474:intron | 25.0% |
| !!! | TGTAATTATTTCTGGAATCA+TGG | + | chr3.4:90863343-90863362 | MS.gene37474:intron | 25.0% |
| !!! | TTCAGAACCAAATTTGTTTT+GGG | + | chr3.4:90864056-90864075 | MS.gene37474:CDS | 25.0% |
| !!! | TTCTTTTGTTTCTCTTTTTG+AGG | + | chr3.4:90863131-90863150 | MS.gene37474:CDS | 25.0% |
| !!! | TTTCAGAACCAAATTTGTTT+TGG | + | chr3.4:90864055-90864074 | MS.gene37474:CDS | 25.0% |
| AACTATAGTTGTTCCTCAAA+TGG | + | chr3.4:90861794-90861813 | MS.gene37474:CDS | 30.0% | |
| AAGTAGGAATTTATACCACA+GGG | - | chr3.4:90862398-90862417 | None:intergenic | 30.0% | |
| ACTATAGTTGTTCCTCAAAT+GGG | + | chr3.4:90861795-90861814 | MS.gene37474:CDS | 30.0% | |
| ATATTGTGGAGATTCTATCA+AGG | - | chr3.4:90863170-90863189 | None:intergenic | 30.0% | |
| ATTTGAGGAACAACTATAGT+TGG | - | chr3.4:90861795-90861814 | None:intergenic | 30.0% | |
| GAAACATGCACTTATAATCA+AGG | - | chr3.4:90862262-90862281 | None:intergenic | 30.0% | |
| GCATAATGCAGAAAATGAAT+AGG | - | chr3.4:90863520-90863539 | None:intergenic | 30.0% | |
| GCATTATACTGTGTATTCTT+TGG | + | chr3.4:90863877-90863896 | MS.gene37474:CDS | 30.0% | |
| GTTAGAAGCAATGAATTCTA+TGG | + | chr3.4:90864426-90864445 | MS.gene37474:CDS | 30.0% | |
| TAAGTAGGAATTTATACCAC+AGG | - | chr3.4:90862399-90862418 | None:intergenic | 30.0% | |
| TATAAGTGCATGTTTCCAAA+TGG | + | chr3.4:90862266-90862285 | MS.gene37474:CDS | 30.0% | |
| TATTGTGGAGATTCTATCAA+GGG | - | chr3.4:90863169-90863188 | None:intergenic | 30.0% | |
| TGGAAAACAAAACTGCAAAT+CGG | - | chr3.4:90862754-90862773 | None:intergenic | 30.0% | |
| TTAAGGACTTGAGGATATAT+AGG | + | chr3.4:90862493-90862512 | MS.gene37474:intron | 30.0% | |
| TTCATATACAGATCCTTATG+AGG | + | chr3.4:90862090-90862109 | MS.gene37474:CDS | 30.0% | |
| TTCTATAAGTTAAGGACTTG+AGG | + | chr3.4:90862484-90862503 | MS.gene37474:intron | 30.0% | |
| TTTATGCAATATTGAACACC+AGG | - | chr3.4:90861500-90861519 | None:intergenic | 30.0% | |
| ! | AAAAATGCTCCAAATTTTCC+TGG | - | chr3.4:90863829-90863848 | None:intergenic | 30.0% |
| ! | AATCTTTGTTTCAACTCAGT+TGG | + | chr3.4:90861916-90861935 | MS.gene37474:intron | 30.0% |
| ! | CAAATTTTCCTGGTTGAAAA+GGG | - | chr3.4:90863819-90863838 | None:intergenic | 30.0% |
| ! | TATGCAGCTTTTCATTCAAA+GGG | + | chr3.4:90862417-90862436 | MS.gene37474:intron | 30.0% |
| ! | TTATGCAGCTTTTCATTCAA+AGG | + | chr3.4:90862416-90862435 | MS.gene37474:intron | 30.0% |
| ! | TTTCCTTATCCTTTTCAATG+GGG | + | chr3.4:90863063-90863082 | MS.gene37474:CDS | 30.0% |
| !!! | TTGTTCTTGTTTTGCATCTT+TGG | - | chr3.4:90861444-90861463 | None:intergenic | 30.0% |
| AAAACCATAACAAGTAGTGC+TGG | - | chr3.4:90862595-90862614 | None:intergenic | 35.0% | |
| AAAAGTTTCCCCATAGTTGA+AGG | - | chr3.4:90863097-90863116 | None:intergenic | 35.0% | |
| AAATAACCATGCACTTGCAA+TGG | - | chr3.4:90862774-90862793 | None:intergenic | 35.0% | |
| AGATTCACTCAGACAATTAC+GGG | + | chr3.4:90862225-90862244 | MS.gene37474:CDS | 35.0% | |
| AGCAACACCAACAACAAAAA+TGG | - | chr3.4:90862144-90862163 | None:intergenic | 35.0% | |
| AGTCCAGTGAATGTTACATA+AGG | - | chr3.4:90862354-90862373 | None:intergenic | 35.0% | |
| ATCCAAAATGAAAGCAACCA+AGG | - | chr3.4:90864322-90864341 | None:intergenic | 35.0% | |
| ATTTCAATCCACTGTCATCA+CGG | - | chr3.4:90864374-90864393 | None:intergenic | 35.0% | |
| CAAATGGTTATGGGATTCTT+GGG | + | chr3.4:90862282-90862301 | MS.gene37474:CDS | 35.0% | |
| CATATTTGCATGTAGTCTAC+TGG | + | chr3.4:90863223-90863242 | MS.gene37474:intron | 35.0% | |
| GAATGAAAAGCTGCATAAGT+AGG | - | chr3.4:90862414-90862433 | None:intergenic | 35.0% | |
| GAATGAAAATACTAACGCCA+AGG | - | chr3.4:90861533-90861552 | None:intergenic | 35.0% | |
| GAGATTCACTCAGACAATTA+CGG | + | chr3.4:90862224-90862243 | MS.gene37474:intron | 35.0% | |
| GCACTCTCATTGTTATCTTA+GGG | + | chr3.4:90863395-90863414 | MS.gene37474:intron | 35.0% | |
| GCATGTTTCCAAATGGTTAT+GGG | + | chr3.4:90862273-90862292 | MS.gene37474:CDS | 35.0% | |
| GTCCAGTGAATGTTACATAA+GGG | - | chr3.4:90862353-90862372 | None:intergenic | 35.0% | |
| TATGAACCAACAACTACAGT+TGG | - | chr3.4:90862022-90862041 | None:intergenic | 35.0% | |
| TATGTAACATTCACTGGACT+TGG | + | chr3.4:90862354-90862373 | MS.gene37474:CDS | 35.0% | |
| TCATAAAACCAGCTGATATC+TGG | - | chr3.4:90863610-90863629 | None:intergenic | 35.0% | |
| TGAGAAGCCCAAAACAAATT+TGG | - | chr3.4:90864066-90864085 | None:intergenic | 35.0% | |
| TGCATGTTTCCAAATGGTTA+TGG | + | chr3.4:90862272-90862291 | MS.gene37474:CDS | 35.0% | |
| TTATGGGATTCTTGGGATTA+TGG | + | chr3.4:90862289-90862308 | MS.gene37474:CDS | 35.0% | |
| TTGAAGAAATGTGCTTAGTC+CGG | - | chr3.4:90861978-90861997 | None:intergenic | 35.0% | |
| ! | CAACTATTTTGTGTGCTTTC+TGG | - | chr3.4:90862836-90862855 | None:intergenic | 35.0% |
| ! | CCAAATTTTCCTGGTTGAAA+AGG | - | chr3.4:90863820-90863839 | None:intergenic | 35.0% |
| ! | CCTTTTCAACCAGGAAAATT+TGG | + | chr3.4:90863817-90863836 | MS.gene37474:intron | 35.0% |
| ! | TACTGGTACATTTTATGCTG+CGG | + | chr3.4:90863240-90863259 | MS.gene37474:CDS | 35.0% |
| ! | TGTTATGGTTTTCATCTCTC+AGG | + | chr3.4:90862603-90862622 | MS.gene37474:CDS | 35.0% |
| !! | TCATGCTCCATTTTTGTTGT+TGG | + | chr3.4:90862134-90862153 | MS.gene37474:intron | 35.0% |
| !!! | CTCTTTTTGAGGTAAGCAAT+AGG | + | chr3.4:90863142-90863161 | MS.gene37474:intron | 35.0% |
| AAAAACTCGTTGAGTCTGCA+TGG | - | chr3.4:90864456-90864475 | None:intergenic | 40.0% | |
| AAAATGAAGGTGGAGATGGT+GGG | + | chr3.4:90861357-90861376 | MS.gene37474:CDS | 40.0% | |
| AACAACTACAGTTGGCAATC+GGG | - | chr3.4:90862014-90862033 | None:intergenic | 40.0% | |
| AAGTACACATCGACCTCATA+AGG | - | chr3.4:90862106-90862125 | None:intergenic | 40.0% | |
| AAGTCCTACCTTCAACTATG+GGG | + | chr3.4:90863086-90863105 | MS.gene37474:CDS | 40.0% | |
| ACATAAGGGACAACACAAAG+TGG | - | chr3.4:90862339-90862358 | None:intergenic | 40.0% | |
| ACATTGTTTCCACCCATTTG+AGG | - | chr3.4:90861810-90861829 | None:intergenic | 40.0% | |
| ACTGCAAATCGGTCAAATGT+AGG | - | chr3.4:90862743-90862762 | None:intergenic | 40.0% | |
| ATAGTTGTTCCTCAAATGGG+TGG | + | chr3.4:90861798-90861817 | MS.gene37474:CDS | 40.0% | |
| ATGTGCCTACAATCTTACCA+TGG | - | chr3.4:90862893-90862912 | None:intergenic | 40.0% | |
| CAACAACTACAGTTGGCAAT+CGG | - | chr3.4:90862015-90862034 | None:intergenic | 40.0% | |
| CAAGAGTCAGAATGTAATGC+TGG | - | chr3.4:90861755-90861774 | None:intergenic | 40.0% | |
| CAAGTAAAACAGGAACATGC+AGG | + | chr3.4:90864131-90864150 | MS.gene37474:CDS | 40.0% | |
| CAGAACTAATAAGACCAGCA+CGG | - | chr3.4:90862868-90862887 | None:intergenic | 40.0% | |
| CAGACAATTACGGGAATACA+AGG | + | chr3.4:90862234-90862253 | MS.gene37474:CDS | 40.0% | |
| CAGAGTACGTTGTTTGTTTC+CGG | + | chr3.4:90861956-90861975 | MS.gene37474:CDS | 40.0% | |
| CAGCATTACATTCTGACTCT+TGG | + | chr3.4:90861753-90861772 | MS.gene37474:CDS | 40.0% | |
| CAGGTAATTGCTCTTTAGCT+GGG | - | chr3.4:90861481-90861500 | None:intergenic | 40.0% | |
| CAGTATAATGCTGCCATGAT+TGG | - | chr3.4:90863868-90863887 | None:intergenic | 40.0% | |
| CATAAGGGACAACACAAAGT+GGG | - | chr3.4:90862338-90862357 | None:intergenic | 40.0% | |
| CATATTCGCTTCACACACAA+TGG | + | chr3.4:90864290-90864309 | MS.gene37474:CDS | 40.0% | |
| CCAAATGGTTATGGGATTCT+TGG | + | chr3.4:90862281-90862300 | MS.gene37474:CDS | 40.0% | |
| CCAAGAATCCCATAACCATT+TGG | - | chr3.4:90862284-90862303 | None:intergenic | 40.0% | |
| CTGATATCTGGATGACTCTT+CGG | - | chr3.4:90863598-90863617 | None:intergenic | 40.0% | |
| CTTCCCCATTGAAAAGGATA+AGG | - | chr3.4:90863069-90863088 | None:intergenic | 40.0% | |
| GAAGTCCTACCTTCAACTAT+GGG | + | chr3.4:90863085-90863104 | MS.gene37474:CDS | 40.0% | |
| GATTATGGAGAAATGCTGTC+AGG | + | chr3.4:90862304-90862323 | MS.gene37474:CDS | 40.0% | |
| GCTTGAACAGCTGACATAAT+TGG | - | chr3.4:90862058-90862077 | None:intergenic | 40.0% | |
| GGCACTCTCATTGTTATCTT+AGG | + | chr3.4:90863394-90863413 | MS.gene37474:intron | 40.0% | |
| GTCCCTTATGTAACATTCAC+TGG | + | chr3.4:90862348-90862367 | MS.gene37474:CDS | 40.0% | |
| TATGCACTGCGCTTATTTCA+GGG | + | chr3.4:90863535-90863554 | MS.gene37474:intron | 40.0% | |
| TCAGATAATCTCACCCATCT+AGG | - | chr3.4:90864158-90864177 | None:intergenic | 40.0% | |
| TCTTTGCTCAATGGCATGTT+TGG | + | chr3.4:90863425-90863444 | MS.gene37474:CDS | 40.0% | |
| TGAAAATACTAACGCCAAGG+TGG | - | chr3.4:90861530-90861549 | None:intergenic | 40.0% | |
| TGGCAACATGTGTTGAAGTT+GGG | + | chr3.4:90862566-90862585 | MS.gene37474:CDS | 40.0% | |
| TGGGAGAAGTTCAGTATCTA+TGG | + | chr3.4:90864396-90864415 | MS.gene37474:CDS | 40.0% | |
| TGTTTCAACTCAGTTGGAGA+AGG | + | chr3.4:90861922-90861941 | MS.gene37474:intron | 40.0% | |
| TTATGCACTGCGCTTATTTC+AGG | + | chr3.4:90863534-90863553 | MS.gene37474:intron | 40.0% | |
| TTCCATACCTTTGCCAATCA+TGG | + | chr3.4:90863852-90863871 | MS.gene37474:CDS | 40.0% | |
| TTTCAATCCACTGTCATCAC+GGG | - | chr3.4:90864373-90864392 | None:intergenic | 40.0% | |
| ! | TCACATTTCCCTTTTCAACC+AGG | + | chr3.4:90863808-90863827 | MS.gene37474:intron | 40.0% |
| ! | TGTTTTCCATTGCAAGTGCA+TGG | + | chr3.4:90862765-90862784 | MS.gene37474:CDS | 40.0% |
| ! | TTTTATGCTGCGGCTAGATA+TGG | + | chr3.4:90863250-90863269 | MS.gene37474:CDS | 40.0% |
| ! | TTTTCAATCACTGTTGCAGC+TGG | + | chr3.4:90862546-90862565 | MS.gene37474:intron | 40.0% |
| !! | ACTATTGGCATTGACAAGAG+TGG | + | chr3.4:90863568-90863587 | MS.gene37474:CDS | 40.0% |
| !! | ATGACAGTGGATTGAAATGG+TGG | + | chr3.4:90864376-90864395 | MS.gene37474:CDS | 40.0% |
| !! | CAGCTGAAGCACTTTTATTG+GGG | + | chr3.4:90861727-90861746 | MS.gene37474:intron | 40.0% |
| !! | CTATTGGCATTGACAAGAGT+GGG | + | chr3.4:90863569-90863588 | MS.gene37474:CDS | 40.0% |
| !! | GCAGCTGAAGCACTTTTATT+GGG | + | chr3.4:90861726-90861745 | MS.gene37474:intron | 40.0% |
| !! | GTCTTATTAGTTCTGCTCCA+TGG | + | chr3.4:90862873-90862892 | MS.gene37474:CDS | 40.0% |
| !! | GTGATGACAGTGGATTGAAA+TGG | + | chr3.4:90864373-90864392 | MS.gene37474:CDS | 40.0% |
| !! | TGACAGTGGATTGAAATGGT+GGG | + | chr3.4:90864377-90864396 | MS.gene37474:CDS | 40.0% |
| !! | TGCAGCTGAAGCACTTTTAT+TGG | + | chr3.4:90861725-90861744 | MS.gene37474:intron | 40.0% |
| !! | TGCCTTGGTTGCTTTCATTT+TGG | + | chr3.4:90864317-90864336 | MS.gene37474:CDS | 40.0% |
| AAATACTAACGCCAAGGTGG+AGG | - | chr3.4:90861527-90861546 | None:intergenic | 45.0% | |
| AATGCTGCCATGATTGGCAA+AGG | - | chr3.4:90863862-90863881 | None:intergenic | 45.0% | |
| AATGGAAATAATGCTGGCGG+TGG | + | chr3.4:90861380-90861399 | MS.gene37474:CDS | 45.0% | |
| AGAGTCATCCAGATATCAGC+TGG | + | chr3.4:90863599-90863618 | MS.gene37474:CDS | 45.0% | |
| ATTCGCTTCACACACAATGG+TGG | + | chr3.4:90864293-90864312 | MS.gene37474:CDS | 45.0% | |
| CAAAATGAAGGTGGAGATGG+TGG | + | chr3.4:90861356-90861375 | MS.gene37474:CDS | 45.0% | |
| CAACGTACTCTGAATCACCT+TGG | - | chr3.4:90861948-90861967 | None:intergenic | 45.0% | |
| CCAGCTAAAGAGCAATTACC+TGG | + | chr3.4:90861479-90861498 | MS.gene37474:CDS | 45.0% | |
| CCAGGTAATTGCTCTTTAGC+TGG | - | chr3.4:90861482-90861501 | None:intergenic | 45.0% | |
| CGATTGCCAACTGTAGTTGT+TGG | + | chr3.4:90862013-90862032 | MS.gene37474:CDS | 45.0% | |
| CTATCATCTTGGTTTCCCTG+TGG | + | chr3.4:90862380-90862399 | MS.gene37474:CDS | 45.0% | |
| CTGCTCCATGGTAAGATTGT+AGG | + | chr3.4:90862885-90862904 | MS.gene37474:intron | 45.0% | |
| CTGGCAACATGTGTTGAAGT+TGG | + | chr3.4:90862565-90862584 | MS.gene37474:CDS | 45.0% | |
| GCATAAATAGTCCTCCACCT+TGG | + | chr3.4:90861513-90861532 | MS.gene37474:CDS | 45.0% | |
| GCTCAAAATGAAGGTGGAGA+TGG | + | chr3.4:90861353-90861372 | MS.gene37474:CDS | 45.0% | |
| GCTTATTTCAGGGAAAACGC+TGG | + | chr3.4:90863545-90863564 | MS.gene37474:intron | 45.0% | |
| GGAAGTCCTACCTTCAACTA+TGG | + | chr3.4:90863084-90863103 | MS.gene37474:CDS | 45.0% | |
| GGAGTAGCTTCTTTGCTCAA+TGG | + | chr3.4:90863416-90863435 | MS.gene37474:CDS | 45.0% | |
| GGGAATGGAAATAATGCTGG+CGG | + | chr3.4:90861377-90861396 | MS.gene37474:CDS | 45.0% | |
| GGTGGGAATGGAAATAATGC+TGG | + | chr3.4:90861374-90861393 | MS.gene37474:CDS | 45.0% | |
| GTAGGACTTCCCCATTGAAA+AGG | - | chr3.4:90863075-90863094 | None:intergenic | 45.0% | |
| GTTTCCCCATAGTTGAAGGT+AGG | - | chr3.4:90863093-90863112 | None:intergenic | 45.0% | |
| TGCCATGATTGGCAAAGGTA+TGG | - | chr3.4:90863857-90863876 | None:intergenic | 45.0% | |
| TTGGGCTTCTCATTCTTCCT+CGG | + | chr3.4:90864074-90864093 | MS.gene37474:CDS | 45.0% | |
| ! | GCTTCCAGCACTACTTGTTA+TGG | + | chr3.4:90862588-90862607 | MS.gene37474:CDS | 45.0% |
| ! | GGACTTGGTCTCTATCATCT+TGG | + | chr3.4:90862369-90862388 | MS.gene37474:CDS | 45.0% |
| !! | GGCATGTTTGGTTCTGTAAC+AGG | + | chr3.4:90863437-90863456 | MS.gene37474:CDS | 45.0% |
| AACTCAGTTGGAGAAGGCCA+AGG | + | chr3.4:90861928-90861947 | MS.gene37474:intron | 50.0% | |
| AGGAACATGCAGGTCCTAGA+TGG | + | chr3.4:90864141-90864160 | MS.gene37474:CDS | 50.0% | |
| CAGGGAAAACGCTGGACTAT+TGG | + | chr3.4:90863553-90863572 | MS.gene37474:intron | 50.0% | |
| CTGATAACAGAAGGTGGCAC+GGG | - | chr3.4:90863286-90863305 | None:intergenic | 50.0% | |
| GCTGATAACAGAAGGTGGCA+CGG | - | chr3.4:90863287-90863306 | None:intergenic | 50.0% | |
| GGAACATGCAGGTCCTAGAT+GGG | + | chr3.4:90864142-90864161 | MS.gene37474:CDS | 50.0% | |
| TATGCAGCTTCTGCAGGTCT+TGG | + | chr3.4:90864005-90864024 | MS.gene37474:intron | 50.0% | |
| TCTTTAGCTGGGTGTGCTAC+TGG | - | chr3.4:90861470-90861489 | None:intergenic | 50.0% | |
| TTGGGATATGCAGCTTCTGC+AGG | + | chr3.4:90863999-90864018 | MS.gene37474:intron | 50.0% | |
| ! | ATTGCGGTATTGAGACACCG+AGG | - | chr3.4:90864094-90864113 | None:intergenic | 50.0% |
| !! | GGACAACACAAAGTGGGCTA+AGG | - | chr3.4:90862332-90862351 | None:intergenic | 50.0% |
| ACACACAATGGTGGCTGCCT+TGG | + | chr3.4:90864302-90864321 | MS.gene37474:CDS | 55.0% | |
| CCACCTTCTGTTATCAGCCG+CGG | + | chr3.4:90863289-90863308 | MS.gene37474:CDS | 55.0% | |
| GGAAATAATGCTGGCGGTGG+CGG | + | chr3.4:90861383-90861402 | MS.gene37474:CDS | 55.0% | |
| GTTCCGCGGCTGATAACAGA+AGG | - | chr3.4:90863295-90863314 | None:intergenic | 55.0% | |
| TAAGACCAGCACGGTCAGTG+CGG | - | chr3.4:90862859-90862878 | None:intergenic | 55.0% | |
| TCTGTTATCAGCCGCGGAAC+TGG | + | chr3.4:90863295-90863314 | MS.gene37474:CDS | 55.0% | |
| ! | ACGGGCTGCATCATCTTCAC+GGG | - | chr3.4:90864355-90864374 | None:intergenic | 55.0% |
| ! | CACGGGCTGCATCATCTTCA+CGG | - | chr3.4:90864356-90864375 | None:intergenic | 55.0% |
| !! | GAAGGTGGAGATGGTGGGAA+TGG | + | chr3.4:90861362-90861381 | MS.gene37474:CDS | 55.0% |
| CCGCGGCTGATAACAGAAGG+TGG | - | chr3.4:90863292-90863311 | None:intergenic | 60.0% | |
| GATGCAGCCCGTGATGACAG+TGG | + | chr3.4:90864363-90864382 | MS.gene37474:CDS | 60.0% | |
| TTACCAGCCAGCCAGTTCCG+CGG | - | chr3.4:90863309-90863328 | None:intergenic | 60.0% | |
| TTATCAGCCGCGGAACTGGC+TGG | + | chr3.4:90863299-90863318 | MS.gene37474:CDS | 60.0% | |
| ! | AATGCTGGCGGTGGCGGTGA+TGG | + | chr3.4:90861389-90861408 | MS.gene37474:CDS | 65.0% |
| ! | AGTTGCCGCACTGACCGTGC+TGG | + | chr3.4:90862851-90862870 | MS.gene37474:CDS | 65.0% |
| CAGCCGCGGAACTGGCTGGC+TGG | + | chr3.4:90863303-90863322 | MS.gene37474:CDS | 75.0% | |
| ! | GCTGGCGGTGGCGGTGATGG+CGG | + | chr3.4:90861392-90861411 | MS.gene37474:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90861350 | 90864488 | 90861350 | ID=MS.gene37474 |
| chr3.4 | mRNA | 90861350 | 90864488 | 90861350 | ID=MS.gene37474.t1;Parent=MS.gene37474 |
| chr3.4 | exon | 90861350 | 90861536 | 90861350 | ID=MS.gene37474.t1.exon1;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90861350 | 90861536 | 90861350 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90861730 | 90861827 | 90861730 | ID=MS.gene37474.t1.exon2;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90861730 | 90861827 | 90861730 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90861935 | 90862111 | 90861935 | ID=MS.gene37474.t1.exon3;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90861935 | 90862111 | 90861935 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90862225 | 90862401 | 90862225 | ID=MS.gene37474.t1.exon4;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90862225 | 90862401 | 90862225 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90862565 | 90862624 | 90862565 | ID=MS.gene37474.t1.exon5;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90862565 | 90862624 | 90862565 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90862710 | 90862894 | 90862710 | ID=MS.gene37474.t1.exon6;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90862710 | 90862894 | 90862710 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90863056 | 90863152 | 90863056 | ID=MS.gene37474.t1.exon7;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90863056 | 90863152 | 90863056 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90863238 | 90863324 | 90863238 | ID=MS.gene37474.t1.exon8;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90863238 | 90863324 | 90863238 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90863416 | 90863474 | 90863416 | ID=MS.gene37474.t1.exon9;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90863416 | 90863474 | 90863416 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90863556 | 90863647 | 90863556 | ID=MS.gene37474.t1.exon10;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90863556 | 90863647 | 90863556 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90863830 | 90863907 | 90863830 | ID=MS.gene37474.t1.exon11;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90863830 | 90863907 | 90863830 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90864012 | 90864163 | 90864012 | ID=MS.gene37474.t1.exon12;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90864012 | 90864163 | 90864012 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| chr3.4 | exon | 90864270 | 90864488 | 90864270 | ID=MS.gene37474.t1.exon13;Parent=MS.gene37474.t1 |
| chr3.4 | CDS | 90864270 | 90864488 | 90864270 | ID=cds.MS.gene37474.t1;Parent=MS.gene37474.t1 |
| Gene Sequence |
| Protein sequence |
