Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37681.t1 | AAK63815.1 | 96.5 | 199 | 4 | 1 | 1 | 196 | 1 | 199 | 3.40E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37681.t1 | P11432 | 74.4 | 199 | 45 | 2 | 1 | 196 | 1 | 196 | 6.6e-70 | 265.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37681.t1 | Q94F86 | 96.5 | 199 | 4 | 1 | 1 | 196 | 1 | 199 | 2.4e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049170 | MS.gene37681 | 0.810787 | 9.69E-51 | -1.69E-46 |
MS.gene049369 | MS.gene37681 | 0.806453 | 8.17E-50 | -1.69E-46 |
MS.gene050060 | MS.gene37681 | 0.801603 | 8.33E-49 | -1.69E-46 |
MS.gene051617 | MS.gene37681 | 0.804048 | 2.60E-49 | -1.69E-46 |
MS.gene052188 | MS.gene37681 | 0.825101 | 5.63E-54 | -1.69E-46 |
MS.gene052340 | MS.gene37681 | 0.809651 | 1.70E-50 | -1.69E-46 |
MS.gene052469 | MS.gene37681 | 0.846629 | 1.93E-59 | -1.69E-46 |
MS.gene052870 | MS.gene37681 | 0.84972 | 2.70E-60 | -1.69E-46 |
MS.gene052872 | MS.gene37681 | 0.83964 | 1.40E-57 | -1.69E-46 |
MS.gene053449 | MS.gene37681 | 0.801587 | 8.39E-49 | -1.69E-46 |
MS.gene054349 | MS.gene37681 | 0.806512 | 7.93E-50 | -1.69E-46 |
MS.gene05494 | MS.gene37681 | 0.814858 | 1.24E-51 | -1.69E-46 |
MS.gene055224 | MS.gene37681 | 0.801482 | 8.82E-49 | -1.69E-46 |
MS.gene055539 | MS.gene37681 | 0.838118 | 3.48E-57 | -1.69E-46 |
MS.gene055741 | MS.gene37681 | 0.805432 | 1.34E-49 | -1.69E-46 |
MS.gene055744 | MS.gene37681 | 0.808012 | 3.82E-50 | -1.69E-46 |
MS.gene059717 | MS.gene37681 | 0.839847 | 1.24E-57 | -1.69E-46 |
MS.gene059788 | MS.gene37681 | 0.807777 | 4.28E-50 | -1.69E-46 |
MS.gene059807 | MS.gene37681 | 0.807326 | 5.34E-50 | -1.69E-46 |
MS.gene060832 | MS.gene37681 | 0.804885 | 1.74E-49 | -1.69E-46 |
MS.gene060981 | MS.gene37681 | 0.804828 | 1.79E-49 | -1.69E-46 |
MS.gene061154 | MS.gene37681 | 0.813599 | 2.36E-51 | -1.69E-46 |
MS.gene061231 | MS.gene37681 | 0.812695 | 3.72E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37681.t1 | MTR_1g102780 | 94.500 | 200 | 7 | 2 | 1 | 196 | 1 | 200 | 1.01e-132 | 370 |
MS.gene37681.t1 | MTR_1g102800 | 90.000 | 180 | 13 | 2 | 20 | 196 | 20 | 197 | 2.60e-106 | 303 |
MS.gene37681.t1 | MTR_1g102570 | 85.556 | 180 | 21 | 2 | 20 | 196 | 21 | 198 | 1.91e-103 | 296 |
MS.gene37681.t1 | MTR_1g102810 | 79.592 | 196 | 26 | 2 | 1 | 196 | 1 | 182 | 1.64e-96 | 278 |
MS.gene37681.t1 | MTR_1g102830 | 80.000 | 180 | 19 | 3 | 20 | 196 | 21 | 186 | 1.82e-96 | 278 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37681.t1 | AT3G22840 | 55.276 | 199 | 82 | 5 | 1 | 196 | 1 | 195 | 2.36e-62 | 192 |
MS.gene37681.t1 | AT4G14690 | 52.261 | 199 | 86 | 4 | 1 | 196 | 1 | 193 | 1.54e-57 | 180 |
Find 54 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGCTGATGGTGGTGTAAT+TGG | 0.245963 | 1.1:+73602654 | None:intergenic |
TGGTGGAATTCCATGGTTCT+TGG | 0.288858 | 1.1:-73602344 | MS.gene37681:CDS |
GGTGGAATTCCATGGTTCTT+GGG | 0.299911 | 1.1:-73602343 | MS.gene37681:CDS |
GGTTTGTTTGATCAAATATC+TGG | 0.314167 | 1.1:-73602367 | MS.gene37681:CDS |
GTTGGTTGTGGTTGTGGTGG+TGG | 0.344690 | 1.1:+73602627 | None:intergenic |
TGTGGTTGTGGTGGTGGAGT+TGG | 0.352890 | 1.1:+73602633 | None:intergenic |
ATTGGGTCTACAGGCACCTT+TGG | 0.360861 | 1.1:+73602672 | None:intergenic |
TATGTTGGGTTTGATTGCTT+TGG | 0.370659 | 1.1:-73602203 | MS.gene37681:CDS |
AATGGAAGGTTGGCTATGAT+TGG | 0.393839 | 1.1:-73602430 | MS.gene37681:CDS |
CCATTGATTCTCTCAGGTGC+TGG | 0.411549 | 1.1:+73602448 | None:intergenic |
CAAGCATTTCTTCTCAAGCT+TGG | 0.413181 | 1.1:+73602911 | None:intergenic |
GGTGGTGGAGTTGGTGCTGA+TGG | 0.417357 | 1.1:+73602642 | None:intergenic |
CACCTTTGGTGAACGAGTAT+AGG | 0.424707 | 1.1:+73602605 | None:intergenic |
AACCTTCCATTGATTCTCTC+AGG | 0.436061 | 1.1:+73602442 | None:intergenic |
GTGCTGATGGTGGTGTAATT+GGG | 0.440700 | 1.1:+73602655 | None:intergenic |
GAATGGTAGAATTGCTATGT+TGG | 0.450278 | 1.1:-73602218 | MS.gene37681:CDS |
GTATAGGTTGGTTGTGGTTG+TGG | 0.452125 | 1.1:+73602621 | None:intergenic |
GTGGAATTCCATGGTTCTTG+GGG | 0.468120 | 1.1:-73602342 | MS.gene37681:CDS |
GGTGGAGTTGGTGCTGATGG+TGG | 0.468618 | 1.1:+73602645 | None:intergenic |
GAAATGCTTGCCTCAAAGTT+CGG | 0.480582 | 1.1:-73602898 | MS.gene37681:CDS |
CGGATTTGATGGCATTTGGT+GGG | 0.485102 | 1.1:-73602471 | MS.gene37681:CDS |
TCGGATTTGATGGCATTTGG+TGG | 0.487791 | 1.1:-73602472 | MS.gene37681:CDS |
AATGGTAGAATTGCTATGTT+GGG | 0.492247 | 1.1:-73602217 | MS.gene37681:CDS |
TCTAGGCCTGCTAGAAATGC+TGG | 0.515845 | 1.1:+73602961 | None:intergenic |
GGTGGTGTAATTGGGTCTAC+AGG | 0.516474 | 1.1:+73602663 | None:intergenic |
CCAGCACCTGAGAGAATCAA+TGG | 0.516939 | 1.1:-73602448 | MS.gene37681:CDS |
CAGCCATGGACCGAACTTTG+AGG | 0.520058 | 1.1:+73602888 | None:intergenic |
TAGGTTGGTTGTGGTTGTGG+TGG | 0.523841 | 1.1:+73602624 | None:intergenic |
CGAAAACATTACCTCAGCCA+TGG | 0.528935 | 1.1:+73602874 | None:intergenic |
CAAAGTTCGGTCCATGGCTG+AGG | 0.533870 | 1.1:-73602885 | MS.gene37681:intron |
AGTGTGGAGTCTAAGTCAAA+AGG | 0.538159 | 1.1:-73602268 | MS.gene37681:CDS |
TTGCCTCAAAGTTCGGTCCA+TGG | 0.544126 | 1.1:-73602891 | MS.gene37681:CDS |
GGTGGAGATAGCAAATGGAC+AGG | 0.547189 | 1.1:-73602389 | MS.gene37681:CDS |
CCATGACCAGCATTTCTAGC+AGG | 0.549312 | 1.1:-73602967 | MS.gene37681:CDS |
CCTGCTAGAAATGCTGGTCA+TGG | 0.550870 | 1.1:+73602967 | None:intergenic |
TTTGATCAAATATCTGGTGG+TGG | 0.559193 | 1.1:-73602361 | MS.gene37681:CDS |
TGAGAGAATCAATGGAAGGT+TGG | 0.560259 | 1.1:-73602440 | MS.gene37681:CDS |
GAACGAGTATAGGTTGGTTG+TGG | 0.560878 | 1.1:+73602615 | None:intergenic |
TAGACTCCACACTAACCCCT+TGG | 0.562091 | 1.1:+73602278 | None:intergenic |
GAAGGTATGTTGTTAACTCT+AGG | 0.563861 | 1.1:+73602944 | None:intergenic |
TTGTTTGATCAAATATCTGG+TGG | 0.570609 | 1.1:-73602364 | MS.gene37681:CDS |
TTTGGTGAACGAGTATAGGT+TGG | 0.589396 | 1.1:+73602609 | None:intergenic |
CTATAGAAATCTATTACACA+AGG | 0.595515 | 1.1:+73602152 | None:intergenic |
AACCTATACTCGTTCACCAA+AGG | 0.597244 | 1.1:-73602607 | MS.gene37681:intron |
TGTCCTCAGATGCTGAGTTG+TGG | 0.599794 | 1.1:-73602240 | MS.gene37681:CDS |
ATTCCACAACTCAGCATCTG+AGG | 0.606044 | 1.1:+73602237 | None:intergenic |
TATCTGGTGGTGGAATTCCA+TGG | 0.624337 | 1.1:-73602351 | MS.gene37681:CDS |
AAGCTTGGCATATACACAGA+AGG | 0.629885 | 1.1:+73602926 | None:intergenic |
AGGGCAGAAAGAGCAACCAA+AGG | 0.630670 | 1.1:-73602688 | MS.gene37681:CDS |
ACACTTGTCCCCAAGAACCA+TGG | 0.633615 | 1.1:+73602334 | None:intergenic |
TCAGATGCTGAGTTGTGGAA+TGG | 0.641735 | 1.1:-73602235 | MS.gene37681:CDS |
GTGGAGATAGCAAATGGACA+GGG | 0.645295 | 1.1:-73602388 | MS.gene37681:CDS |
CACCTGAGAGAATCAATGGA+AGG | 0.646646 | 1.1:-73602444 | MS.gene37681:CDS |
TATAGAAATCTATTACACAA+GGG | 0.717921 | 1.1:+73602153 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTAATAATGATGAAAATA+TGG | - | chr1.1:73602656-73602675 | MS.gene37681:CDS | 15.0% |
!!! | AGTTTTTCATTACATTTATC+AGG | - | chr1.1:73602457-73602476 | MS.gene37681:CDS | 20.0% |
! | TTCATTACATTTATCAGGAA+GGG | - | chr1.1:73602462-73602481 | MS.gene37681:CDS | 25.0% |
! | TTTCATTACATTTATCAGGA+AGG | - | chr1.1:73602461-73602480 | MS.gene37681:CDS | 25.0% |
!! | CGAAAACAGATTTAACTTTA+AGG | - | chr1.1:73602316-73602335 | MS.gene37681:CDS | 25.0% |
!! | GCTTTTACAGAATATGTTAA+GGG | - | chr1.1:73602988-73603007 | MS.gene37681:CDS | 25.0% |
AATGGTAGAATTGCTATGTT+GGG | - | chr1.1:73602952-73602971 | MS.gene37681:CDS | 30.0% | |
TGCATAATGCAACAAGTTAA+TGG | - | chr1.1:73602372-73602391 | MS.gene37681:CDS | 30.0% | |
TTGTTTGATCAAATATCTGG+TGG | - | chr1.1:73602805-73602824 | MS.gene37681:intron | 30.0% | |
! | GGCTTTTACAGAATATGTTA+AGG | - | chr1.1:73602987-73603006 | MS.gene37681:CDS | 30.0% |
! | GGTTTGTTTGATCAAATATC+TGG | - | chr1.1:73602802-73602821 | MS.gene37681:intron | 30.0% |
!! | CTTTGATTCCATTTTTCCAA+GGG | - | chr1.1:73602875-73602894 | MS.gene37681:intron | 30.0% |
!! | TCTTTGATTCCATTTTTCCA+AGG | - | chr1.1:73602874-73602893 | MS.gene37681:intron | 30.0% |
!! | TTTGATTCCATTTTTCCAAG+GGG | - | chr1.1:73602876-73602895 | MS.gene37681:intron | 30.0% |
GAATGGTAGAATTGCTATGT+TGG | - | chr1.1:73602951-73602970 | MS.gene37681:CDS | 35.0% | |
TATGTTGGGTTTGATTGCTT+TGG | - | chr1.1:73602966-73602985 | MS.gene37681:CDS | 35.0% | |
TTTACTACTATGCTCACCTT+TGG | + | chr1.1:73602581-73602600 | None:intergenic | 35.0% | |
TTTGATCAAATATCTGGTGG+TGG | - | chr1.1:73602808-73602827 | MS.gene37681:intron | 35.0% | |
! | CACAAAGTTTTCGGATTTGA+TGG | - | chr1.1:73602687-73602706 | MS.gene37681:CDS | 35.0% |
! | GAAGGTATGTTGTTAACTCT+AGG | + | chr1.1:73602228-73602247 | None:intergenic | 35.0% |
!! | TTTTCGGATTTGATGGCATT+TGG | - | chr1.1:73602694-73602713 | MS.gene37681:intron | 35.0% |
!!! | ATTGGTTTTGTAGCTGCTAT+GGG | - | chr1.1:73602757-73602776 | MS.gene37681:intron | 35.0% |
AACCTATACTCGTTCACCAA+AGG | - | chr1.1:73602562-73602581 | MS.gene37681:intron | 40.0% | |
AAGCTTGGCATATACACAGA+AGG | + | chr1.1:73602246-73602265 | None:intergenic | 40.0% | |
ACACTAACCCCTTGGAAAAA+TGG | + | chr1.1:73602886-73602905 | None:intergenic | 40.0% | |
AGTGTGGAGTCTAAGTCAAA+AGG | - | chr1.1:73602901-73602920 | MS.gene37681:CDS | 40.0% | |
CAAGCATTTCTTCTCAAGCT+TGG | + | chr1.1:73602261-73602280 | None:intergenic | 40.0% | |
GAAATGCTTGCCTCAAAGTT+CGG | - | chr1.1:73602271-73602290 | MS.gene37681:CDS | 40.0% | |
TGAGAGAATCAATGGAAGGT+TGG | - | chr1.1:73602729-73602748 | MS.gene37681:intron | 40.0% | |
TTTGGTGAACGAGTATAGGT+TGG | + | chr1.1:73602563-73602582 | None:intergenic | 40.0% | |
! | AATGGAAGGTTGGCTATGAT+TGG | - | chr1.1:73602739-73602758 | MS.gene37681:intron | 40.0% |
! | GCAGATGAGCACAAAGTTTT+CGG | - | chr1.1:73602678-73602697 | MS.gene37681:CDS | 40.0% |
!! | AACCTTCCATTGATTCTCTC+AGG | + | chr1.1:73602730-73602749 | None:intergenic | 40.0% |
!! | ATTTTTCCAAGGGGTTAGTG+TGG | - | chr1.1:73602885-73602904 | MS.gene37681:intron | 40.0% |
!!! | GATTGGTTTTGTAGCTGCTA+TGG | - | chr1.1:73602756-73602775 | MS.gene37681:intron | 40.0% |
!!! | TTGGTTTTGTAGCTGCTATG+GGG | - | chr1.1:73602758-73602777 | MS.gene37681:intron | 40.0% |
ATTCCACAACTCAGCATCTG+AGG | + | chr1.1:73602935-73602954 | None:intergenic | 45.0% | |
CACCTGAGAGAATCAATGGA+AGG | - | chr1.1:73602725-73602744 | MS.gene37681:intron | 45.0% | |
CACCTTTGGTGAACGAGTAT+AGG | + | chr1.1:73602567-73602586 | None:intergenic | 45.0% | |
CGAAAACATTACCTCAGCCA+TGG | + | chr1.1:73602298-73602317 | None:intergenic | 45.0% | |
GGTGGAATTCCATGGTTCTT+GGG | - | chr1.1:73602826-73602845 | MS.gene37681:intron | 45.0% | |
GTGGAATTCCATGGTTCTTG+GGG | - | chr1.1:73602827-73602846 | MS.gene37681:intron | 45.0% | |
GTGGAGATAGCAAATGGACA+GGG | - | chr1.1:73602781-73602800 | MS.gene37681:intron | 45.0% | |
TCAGATGCTGAGTTGTGGAA+TGG | - | chr1.1:73602934-73602953 | MS.gene37681:CDS | 45.0% | |
TGGTGGAATTCCATGGTTCT+TGG | - | chr1.1:73602825-73602844 | MS.gene37681:intron | 45.0% | |
! | CGGATTTGATGGCATTTGGT+GGG | - | chr1.1:73602698-73602717 | MS.gene37681:intron | 45.0% |
! | TCGGATTTGATGGCATTTGG+TGG | - | chr1.1:73602697-73602716 | MS.gene37681:intron | 45.0% |
!! | GAACGAGTATAGGTTGGTTG+TGG | + | chr1.1:73602557-73602576 | None:intergenic | 45.0% |
!! | GTATAGGTTGGTTGTGGTTG+TGG | + | chr1.1:73602551-73602570 | None:intergenic | 45.0% |
!! | GTGCTGATGGTGGTGTAATT+GGG | + | chr1.1:73602517-73602536 | None:intergenic | 45.0% |
!! | TATCTGGTGGTGGAATTCCA+TGG | - | chr1.1:73602818-73602837 | MS.gene37681:intron | 45.0% |
!!! | TGGTTTTGTAGCTGCTATGG+GGG | - | chr1.1:73602759-73602778 | MS.gene37681:intron | 45.0% |
ACACTTGTCCCCAAGAACCA+TGG | + | chr1.1:73602838-73602857 | None:intergenic | 50.0% | |
AGGGCAGAAAGAGCAACCAA+AGG | - | chr1.1:73602481-73602500 | MS.gene37681:CDS | 50.0% | |
ATGGGGGTGGAGATAGCAAA+TGG | - | chr1.1:73602775-73602794 | MS.gene37681:intron | 50.0% | |
ATTGGGTCTACAGGCACCTT+TGG | + | chr1.1:73602500-73602519 | None:intergenic | 50.0% | |
CCAGCACCTGAGAGAATCAA+TGG | - | chr1.1:73602721-73602740 | MS.gene37681:intron | 50.0% | |
CCTGCTAGAAATGCTGGTCA+TGG | + | chr1.1:73602205-73602224 | None:intergenic | 50.0% | |
GGTGGAGATAGCAAATGGAC+AGG | - | chr1.1:73602780-73602799 | MS.gene37681:intron | 50.0% | |
GGTGGTGTAATTGGGTCTAC+AGG | + | chr1.1:73602509-73602528 | None:intergenic | 50.0% | |
TAGACTCCACACTAACCCCT+TGG | + | chr1.1:73602894-73602913 | None:intergenic | 50.0% | |
TCTAGGCCTGCTAGAAATGC+TGG | + | chr1.1:73602211-73602230 | None:intergenic | 50.0% | |
TGTCCTCAGATGCTGAGTTG+TGG | - | chr1.1:73602929-73602948 | MS.gene37681:CDS | 50.0% | |
TTGCCTCAAAGTTCGGTCCA+TGG | - | chr1.1:73602278-73602297 | MS.gene37681:CDS | 50.0% | |
! | TTTTGTAGCTGCTATGGGGG+TGG | - | chr1.1:73602762-73602781 | MS.gene37681:intron | 50.0% |
!! | CCATGACCAGCATTTCTAGC+AGG | - | chr1.1:73602202-73602221 | MS.gene37681:CDS | 50.0% |
!! | CCATTGATTCTCTCAGGTGC+TGG | + | chr1.1:73602724-73602743 | None:intergenic | 50.0% |
!! | GGTGCTGATGGTGGTGTAAT+TGG | + | chr1.1:73602518-73602537 | None:intergenic | 50.0% |
!! | TAGGTTGGTTGTGGTTGTGG+TGG | + | chr1.1:73602548-73602567 | None:intergenic | 50.0% |
CAAAGTTCGGTCCATGGCTG+AGG | - | chr1.1:73602284-73602303 | MS.gene37681:CDS | 55.0% | |
CAGCCATGGACCGAACTTTG+AGG | + | chr1.1:73602284-73602303 | None:intergenic | 55.0% | |
GTTGGTTGTGGTTGTGGTGG+TGG | + | chr1.1:73602545-73602564 | None:intergenic | 55.0% | |
!! | TGTGGTTGTGGTGGTGGAGT+TGG | + | chr1.1:73602539-73602558 | None:intergenic | 55.0% |
!! | GGTGGAGTTGGTGCTGATGG+TGG | + | chr1.1:73602527-73602546 | None:intergenic | 60.0% |
!! | GGTGGTGGAGTTGGTGCTGA+TGG | + | chr1.1:73602530-73602549 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 73602165 | 73603026 | 73602165 | ID=MS.gene37681 |
chr1.1 | mRNA | 73602165 | 73603026 | 73602165 | ID=MS.gene37681.t1;Parent=MS.gene37681 |
chr1.1 | exon | 73602886 | 73603026 | 73602886 | ID=MS.gene37681.t1.exon1;Parent=MS.gene37681.t1 |
chr1.1 | CDS | 73602886 | 73603026 | 73602886 | ID=cds.MS.gene37681.t1;Parent=MS.gene37681.t1 |
chr1.1 | exon | 73602608 | 73602712 | 73602608 | ID=MS.gene37681.t1.exon2;Parent=MS.gene37681.t1 |
chr1.1 | CDS | 73602608 | 73602712 | 73602608 | ID=cds.MS.gene37681.t1;Parent=MS.gene37681.t1 |
chr1.1 | exon | 73602165 | 73602509 | 73602165 | ID=MS.gene37681.t1.exon3;Parent=MS.gene37681.t1 |
chr1.1 | CDS | 73602165 | 73602509 | 73602165 | ID=cds.MS.gene37681.t1;Parent=MS.gene37681.t1 |
Gene Sequence |
Protein sequence |