Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38680.t1 | XP_013461721.1 | 97.9 | 281 | 5 | 1 | 1 | 281 | 1 | 280 | 1.20E-151 | 545.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38680.t1 | Q4V3E2 | 53.6 | 252 | 114 | 1 | 33 | 281 | 52 | 303 | 7.9e-75 | 282.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38680.t1 | A0A072V241 | 97.9 | 281 | 5 | 1 | 1 | 281 | 1 | 280 | 8.8e-152 | 545.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene38680 | 0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene38680 | 0.800203 | 1.61E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene38680 | 0.815361 | 9.62E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene38680 | 0.805592 | 1.24E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene38680 | 0.811768 | 5.93E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene38680 | 0.805618 | 1.22E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene38680 | 0.806069 | 9.84E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene38680 | 0.836988 | 6.78E-57 | -1.69E-46 |
| MS.gene050721 | MS.gene38680 | 0.835228 | 1.90E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene38680 | 0.83896 | 2.11E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene38680 | 0.814574 | 1.44E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene38680 | 0.805853 | 1.09E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene38680 | 0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene38680 | 0.818389 | 2.01E-52 | -1.69E-46 |
| MS.gene054185 | MS.gene38680 | 0.817961 | 2.51E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene38680 | 0.802514 | 5.41E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene38680 | 0.805726 | 1.16E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene38680 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene38680 | 0.809131 | 2.20E-50 | -1.69E-46 |
| MS.gene059421 | MS.gene38680 | 0.803992 | 2.68E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene38680 | 0.802777 | 4.78E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene38680 | 0.803273 | 3.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38680.t1 | MTR_3g102460 | 97.865 | 281 | 5 | 1 | 1 | 281 | 1 | 280 | 0.0 | 570 |
| MS.gene38680.t1 | MTR_3g102460 | 98.406 | 251 | 3 | 1 | 1 | 251 | 1 | 250 | 0.0 | 510 |
| MS.gene38680.t1 | MTR_3g102460 | 97.596 | 208 | 5 | 0 | 74 | 281 | 36 | 243 | 5.81e-151 | 424 |
| MS.gene38680.t1 | MTR_3g102460 | 98.315 | 178 | 3 | 0 | 74 | 251 | 36 | 213 | 4.10e-128 | 365 |
| MS.gene38680.t1 | MTR_4g094988 | 50.338 | 296 | 123 | 5 | 2 | 282 | 6 | 292 | 6.05e-91 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38680.t1 | AT1G02740 | 53.571 | 252 | 114 | 1 | 33 | 281 | 52 | 303 | 2.45e-97 | 290 |
| MS.gene38680.t1 | AT4G37280 | 50.566 | 265 | 115 | 3 | 33 | 282 | 29 | 292 | 7.89e-93 | 278 |
Find 45 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACGATCCACGAGGCTTTC+TGG | 0.172555 | 3.3:+84679882 | None:intergenic |
| AATTGCTTCTTTAGTGTTAG+TGG | 0.296530 | 3.3:+84678051 | None:intergenic |
| GAGCATTTGTTACGTCTCTT+TGG | 0.315634 | 3.3:-84677085 | MS.gene38680:intron |
| TTGAATATGTCGTTCACATT+AGG | 0.321893 | 3.3:+84677801 | None:intergenic |
| TATCGTTTGGACAAGCTTCT+TGG | 0.327945 | 3.3:+84677134 | None:intergenic |
| CTTGCACTTGATGAGAAATA+TGG | 0.334212 | 3.3:-84679919 | MS.gene38680:CDS |
| CACAAATACTTGACTTTCTC+AGG | 0.343256 | 3.3:-84676630 | MS.gene38680:intron |
| AAGAAGAACTAGAATGAAAA+TGG | 0.345730 | 3.3:-84680478 | None:intergenic |
| AAAGAATGATTCTCTGGTTA+AGG | 0.387942 | 3.3:-84678371 | MS.gene38680:intron |
| TTGTTCCATGCTAACATTGA+AGG | 0.392194 | 3.3:-84676676 | MS.gene38680:CDS |
| TTTACTGCAGTTGGGATGAA+TGG | 0.398180 | 3.3:-84679993 | MS.gene38680:intron |
| ATCGCTCCTTCTGCTATATA+TGG | 0.401350 | 3.3:-84677112 | MS.gene38680:CDS |
| GCAGAAGGAGCGATATCGTT+TGG | 0.409875 | 3.3:+84677121 | None:intergenic |
| TCCGTTTCTCCTTACGATGA+AGG | 0.428559 | 3.3:-84680381 | MS.gene38680:CDS |
| TATCTGACCATTCGAACTCT+TGG | 0.433463 | 3.3:+84679861 | None:intergenic |
| AGAATGCTTGTTACAAATGC+AGG | 0.437753 | 3.3:-84676357 | MS.gene38680:CDS |
| GATTACAGATTGAAGAAAAG+TGG | 0.438131 | 3.3:-84677768 | MS.gene38680:CDS |
| AAAACGAAAGAATGATTCTC+TGG | 0.464533 | 3.3:-84678377 | MS.gene38680:CDS |
| TCCTTTCATAATTTCTTCAA+CGG | 0.472345 | 3.3:+84677222 | None:intergenic |
| TCCTTCATCGTAAGGAGAAA+CGG | 0.473763 | 3.3:+84680380 | None:intergenic |
| TTTGAGTTTATTACTCATCT+CGG | 0.485685 | 3.3:-84678018 | MS.gene38680:CDS |
| CGACACATTGATAGAACTCC+AGG | 0.487335 | 3.3:-84676653 | MS.gene38680:CDS |
| TTATTGTACAAGAGCATCAC+TGG | 0.493203 | 3.3:+84677172 | None:intergenic |
| TCCGTTGAAGAAATTATGAA+AGG | 0.507459 | 3.3:-84677223 | MS.gene38680:CDS |
| TGAATGTTGACAAGTTTGTC+CGG | 0.509456 | 3.3:+84678078 | None:intergenic |
| TTACTGCAGTTGGGATGAAT+GGG | 0.516086 | 3.3:-84679992 | MS.gene38680:intron |
| TTCTTGTCTTTATGAAGCCA+AGG | 0.516398 | 3.3:-84680334 | MS.gene38680:intron |
| ACTTTCTCTCCTTCATCGTA+AGG | 0.528874 | 3.3:+84680372 | None:intergenic |
| GAAAGTCAAGTATTTGTGCC+TGG | 0.560002 | 3.3:+84676635 | None:intergenic |
| TTAGCATGGAACAATAACTC+TGG | 0.593094 | 3.3:+84676685 | None:intergenic |
| GGATCGTCCAAGAGTTCGAA+TGG | 0.602928 | 3.3:-84679868 | MS.gene38680:intron |
| GAATGCTTGTTACAAATGCA+GGG | 0.615375 | 3.3:-84676356 | MS.gene38680:CDS |
| TGTCGCCTTCAATGTTAGCA+TGG | 0.620025 | 3.3:+84676671 | None:intergenic |
| TGCAGTTGGGATGAATGGGT+TGG | 0.622269 | 3.3:-84679988 | MS.gene38680:intron |
| TCAGCACCATATATAGCAGA+AGG | 0.623119 | 3.3:+84677106 | None:intergenic |
| AAATGTAATGCAGTAGCAAG+AGG | 0.629755 | 3.3:-84678403 | MS.gene38680:intron |
| TTGAATACAAACATAAACGA+TGG | 0.630193 | 3.3:-84680213 | MS.gene38680:CDS |
| GTTTATTACTCATCTCGGCA+AGG | 0.637047 | 3.3:-84678013 | MS.gene38680:intron |
| ATAATATCACATAGCTTCTG+CGG | 0.641242 | 3.3:-84676384 | MS.gene38680:intron |
| CTTCATAAAGACAAGAAGTG+TGG | 0.647600 | 3.3:+84680340 | None:intergenic |
| GAACTCTTGGACGATCCACG+AGG | 0.665911 | 3.3:+84679874 | None:intergenic |
| AACATACTGAGGAAAATATG+CGG | 0.687491 | 3.3:-84679948 | MS.gene38680:CDS |
| AAGAATGCCAGAAAGCCTCG+TGG | 0.700259 | 3.3:-84679889 | MS.gene38680:CDS |
| TCGTTCACATTAGGAGTACG+AGG | 0.705008 | 3.3:+84677810 | None:intergenic |
| TCGATTGATGAAACATACTG+AGG | 0.706974 | 3.3:-84679959 | MS.gene38680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATTTAACATGATT+GGG | - | chr3.3:84677489-84677508 | MS.gene38680:intron | 10.0% |
| !! | TAATTTAAATTTAACATGAT+TGG | - | chr3.3:84677488-84677507 | MS.gene38680:intron | 10.0% |
| !! | TAATTTAACATAAAATTAAG+AGG | + | chr3.3:84680217-84680236 | None:intergenic | 10.0% |
| !! | TATTAAAAATACAATTCACA+TGG | - | chr3.3:84677412-84677431 | MS.gene38680:intron | 15.0% |
| !! | TATTTATTCAGTCAATATTT+AGG | - | chr3.3:84679347-84679366 | MS.gene38680:intron | 15.0% |
| !! | TTAAATGTTAAATTAGTCAT+TGG | - | chr3.3:84680253-84680272 | MS.gene38680:intron | 15.0% |
| !!! | ATGTGAATTGTATTTTTAAT+AGG | + | chr3.3:84677413-84677432 | None:intergenic | 15.0% |
| !!! | TATTTTAATTTCATATGCTT+TGG | - | chr3.3:84677796-84677815 | MS.gene38680:CDS | 15.0% |
| !!! | TGTTATTAGTATTATTTTCA+GGG | - | chr3.3:84677538-84677557 | MS.gene38680:intron | 15.0% |
| !!! | TTGTTATTAGTATTATTTTC+AGG | - | chr3.3:84677537-84677556 | MS.gene38680:intron | 15.0% |
| !!! | TTGTTTAACCTATTAATTTT+CGG | + | chr3.3:84676575-84676594 | None:intergenic | 15.0% |
| !!! | TTTAAATTTTAATTTGTACC+AGG | - | chr3.3:84678472-84678491 | MS.gene38680:intron | 15.0% |
| !! | AATGCCATAAAAAGTTTAAT+AGG | + | chr3.3:84677709-84677728 | None:intergenic | 20.0% |
| !! | ACTATAGGGTATAATATAAT+TGG | - | chr3.3:84678667-84678686 | MS.gene38680:intron | 20.0% |
| !! | ATAAACTATGTCAAATTAGT+CGG | - | chr3.3:84678558-84678577 | MS.gene38680:intron | 20.0% |
| !! | ATAGTATAAATAGTAGAGAT+AGG | - | chr3.3:84677044-84677063 | MS.gene38680:intron | 20.0% |
| !! | ATTACAGTTTAATTCTATGT+TGG | - | chr3.3:84679547-84679566 | MS.gene38680:intron | 20.0% |
| !! | ATTCAAACTCAAAAGAAAAT+TGG | - | chr3.3:84677930-84677949 | MS.gene38680:intron | 20.0% |
| !! | CATGTTAAATTTAAATTACG+AGG | + | chr3.3:84677486-84677505 | None:intergenic | 20.0% |
| !! | TATAGTGAAAATGTTGAATT+AGG | + | chr3.3:84676547-84676566 | None:intergenic | 20.0% |
| !! | TATCATATATGATTATTTCC+TGG | + | chr3.3:84678493-84678512 | None:intergenic | 20.0% |
| !! | TTAGGAATGTAATCATTATA+GGG | - | chr3.3:84678092-84678111 | MS.gene38680:CDS | 20.0% |
| !! | TTCTTTGTAGAAAAGATAAT+AGG | - | chr3.3:84678130-84678149 | MS.gene38680:intron | 20.0% |
| !! | TTTAATTCTATGTTGGATAT+AGG | - | chr3.3:84679554-84679573 | MS.gene38680:intron | 20.0% |
| !! | TTTATTGTTTGCTTAATATC+AGG | - | chr3.3:84678691-84678710 | MS.gene38680:intron | 20.0% |
| !!! | AAGCTGTTATTTTAGAAAAA+GGG | + | chr3.3:84679328-84679347 | None:intergenic | 20.0% |
| !!! | AATTTTCTTTTGAGTTTGAA+TGG | + | chr3.3:84677931-84677950 | None:intergenic | 20.0% |
| !!! | GTTATTAGTATTATTTTCAG+GGG | - | chr3.3:84677539-84677558 | MS.gene38680:intron | 20.0% |
| !!! | TAAGCTGTTATTTTAGAAAA+AGG | + | chr3.3:84679329-84679348 | None:intergenic | 20.0% |
| !!! | TACAACTTTTTTTGACTATA+GGG | - | chr3.3:84678653-84678672 | MS.gene38680:intron | 20.0% |
| !!! | TATATATCATTTTGGAGTAA+CGG | - | chr3.3:84679155-84679174 | MS.gene38680:intron | 20.0% |
| !!! | TATATCCTTATCATTTTGTA+TGG | + | chr3.3:84677827-84677846 | None:intergenic | 20.0% |
| !!! | TCTAATTTGTAAAAAGATTG+AGG | + | chr3.3:84679301-84679320 | None:intergenic | 20.0% |
| !!! | TTACAACTTTTTTTGACTAT+AGG | - | chr3.3:84678652-84678671 | MS.gene38680:intron | 20.0% |
| !!! | TTATTTTTCTTGTAGTTATG+TGG | - | chr3.3:84678312-84678331 | MS.gene38680:intron | 20.0% |
| ! | AATCATTATAGGGAAAGTTT+GGG | - | chr3.3:84678102-84678121 | MS.gene38680:intron | 25.0% |
| ! | AATGCCATCAAAAGTTTAAT+AGG | + | chr3.3:84677652-84677671 | None:intergenic | 25.0% |
| ! | AATGTTAAATTAGTCATTGG+TGG | - | chr3.3:84680256-84680275 | MS.gene38680:intron | 25.0% |
| ! | ACAAAATGATAAGGATATAG+AGG | - | chr3.3:84677828-84677847 | MS.gene38680:intron | 25.0% |
| ! | ACAAGTTATTATCCAAAACT+TGG | + | chr3.3:84677583-84677602 | None:intergenic | 25.0% |
| ! | ATAAATTATATGGTCCTGTT+TGG | + | chr3.3:84677353-84677372 | None:intergenic | 25.0% |
| ! | ATACTCTTCCGAAAATTAAT+AGG | - | chr3.3:84676564-84676583 | MS.gene38680:intron | 25.0% |
| ! | ATAGATAAGGATGTTATGAT+GGG | - | chr3.3:84678038-84678057 | MS.gene38680:CDS | 25.0% |
| ! | ATCTACCATACAAAATGATA+AGG | - | chr3.3:84677819-84677838 | MS.gene38680:CDS | 25.0% |
| ! | CAAAATGATAAGGATATAGA+GGG | - | chr3.3:84677829-84677848 | MS.gene38680:intron | 25.0% |
| ! | CTTAGGAATGTAATCATTAT+AGG | - | chr3.3:84678091-84678110 | MS.gene38680:CDS | 25.0% |
| ! | GGTTTAAATAAGAACGAAAA+AGG | + | chr3.3:84676526-84676545 | None:intergenic | 25.0% |
| ! | TAACAATTGTACTGTTGTAT+GGG | - | chr3.3:84677965-84677984 | MS.gene38680:intron | 25.0% |
| ! | TAATCATTATAGGGAAAGTT+TGG | - | chr3.3:84678101-84678120 | MS.gene38680:intron | 25.0% |
| ! | TATGCATGCTATAAAAAACA+AGG | + | chr3.3:84677027-84677046 | None:intergenic | 25.0% |
| ! | TCCTTTCATAATTTCTTCAA+CGG | + | chr3.3:84679590-84679609 | None:intergenic | 25.0% |
| ! | TTAATATCAGGAAAAACTTG+CGG | - | chr3.3:84678703-84678722 | MS.gene38680:intron | 25.0% |
| ! | TTCAACACAAAGCTTAAATA+TGG | + | chr3.3:84679093-84679112 | None:intergenic | 25.0% |
| ! | TTCTGTAACTATCTATTTCA+TGG | - | chr3.3:84680302-84680321 | MS.gene38680:intron | 25.0% |
| ! | TTGAATACAAACATAAACGA+TGG | - | chr3.3:84676596-84676615 | MS.gene38680:intron | 25.0% |
| ! | TTTATGGCATTTGTGTATAA+TGG | - | chr3.3:84677718-84677737 | MS.gene38680:intron | 25.0% |
| !! | ACAAGATGGTTATTTCATTT+AGG | - | chr3.3:84679769-84679788 | MS.gene38680:intron | 25.0% |
| !! | ACCTCCTATTAAACTTTTTA+TGG | - | chr3.3:84677702-84677721 | MS.gene38680:intron | 25.0% |
| !! | TTGATGGCATTTGTATATAA+TGG | - | chr3.3:84677661-84677680 | MS.gene38680:intron | 25.0% |
| !! | TTTGAGTTTATTACTCATCT+CGG | - | chr3.3:84678791-84678810 | MS.gene38680:intron | 25.0% |
| !!! | AAACCAATCTAAGACATTTT+GGG | - | chr3.3:84678381-84678400 | MS.gene38680:CDS | 25.0% |
| !!! | AAGTACTTTTTTGTTGTTGA+AGG | + | chr3.3:84677285-84677304 | None:intergenic | 25.0% |
| !!! | AGTTTTGGATAATAACTTGT+TGG | - | chr3.3:84677583-84677602 | MS.gene38680:intron | 25.0% |
| !!! | ATTCAATTTTGGTTGTTTCA+GGG | - | chr3.3:84676706-84676725 | MS.gene38680:intron | 25.0% |
| !!! | GTTGTTTTCATAACCTATTT+TGG | + | chr3.3:84677181-84677200 | None:intergenic | 25.0% |
| !!! | GTTTTGGATAATAACTTGTT+GGG | - | chr3.3:84677584-84677603 | MS.gene38680:intron | 25.0% |
| !!! | TAAACCAATCTAAGACATTT+TGG | - | chr3.3:84678380-84678399 | MS.gene38680:CDS | 25.0% |
| !!! | TTCTGTAAAGCTTTATTATC+CGG | - | chr3.3:84680040-84680059 | MS.gene38680:intron | 25.0% |
| !!! | TTTTGTTTTCGTAACTCTAA+GGG | - | chr3.3:84676683-84676702 | MS.gene38680:CDS | 25.0% |
| AAAACGAAAGAATGATTCTC+TGG | - | chr3.3:84678432-84678451 | MS.gene38680:intron | 30.0% | |
| AAACACAAGTATTAGAAGTC+CGG | + | chr3.3:84680062-84680081 | None:intergenic | 30.0% | |
| AAAGAATGATTCTCTGGTTA+AGG | - | chr3.3:84678438-84678457 | MS.gene38680:intron | 30.0% | |
| AAAGGAAAGAAAAACGAGAA+AGG | + | chr3.3:84676508-84676527 | None:intergenic | 30.0% | |
| AACACAAAGCTTAAATATGG+AGG | + | chr3.3:84679090-84679109 | None:intergenic | 30.0% | |
| AACATACTGAGGAAAATATG+CGG | - | chr3.3:84676861-84676880 | MS.gene38680:intron | 30.0% | |
| AACTCACTGTTTCATAGATA+AGG | - | chr3.3:84678025-84678044 | MS.gene38680:CDS | 30.0% | |
| AATGAAATAACCATCTTGTC+TGG | + | chr3.3:84679768-84679787 | None:intergenic | 30.0% | |
| AATTGCTTCTTTAGTGTTAG+TGG | + | chr3.3:84678761-84678780 | None:intergenic | 30.0% | |
| AATTGGCTGTAAAGAAAATG+AGG | + | chr3.3:84678879-84678898 | None:intergenic | 30.0% | |
| ACACAAAGCTTAAATATGGA+GGG | + | chr3.3:84679089-84679108 | None:intergenic | 30.0% | |
| ATAATATCACATAGCTTCTG+CGG | - | chr3.3:84680425-84680444 | MS.gene38680:CDS | 30.0% | |
| ATGAAATAACCATCTTGTCT+GGG | + | chr3.3:84679767-84679786 | None:intergenic | 30.0% | |
| ATTGGAACTTTCTATCAACT+GGG | + | chr3.3:84679382-84679401 | None:intergenic | 30.0% | |
| CATAGATAAGGATGTTATGA+TGG | - | chr3.3:84678037-84678056 | MS.gene38680:CDS | 30.0% | |
| CATCACAAGTGGAAATATAA+AGG | + | chr3.3:84679521-84679540 | None:intergenic | 30.0% | |
| CATGCTATAAAAAACAAGGA+AGG | + | chr3.3:84677023-84677042 | None:intergenic | 30.0% | |
| GACGAAATCAACGAATAATT+TGG | - | chr3.3:84677882-84677901 | MS.gene38680:intron | 30.0% | |
| GATTACAGATTGAAGAAAAG+TGG | - | chr3.3:84679041-84679060 | MS.gene38680:intron | 30.0% | |
| GCCATAAAAAGTTTAATAGG+AGG | + | chr3.3:84677706-84677725 | None:intergenic | 30.0% | |
| GTAACAATTGTACTGTTGTA+TGG | - | chr3.3:84677964-84677983 | MS.gene38680:intron | 30.0% | |
| GTAATAATAAGCATCACAAG+TGG | + | chr3.3:84679532-84679551 | None:intergenic | 30.0% | |
| TAGTTATGTGGTAAAGTAAG+AGG | - | chr3.3:84678324-84678343 | MS.gene38680:intron | 30.0% | |
| TATTGGAACTTTCTATCAAC+TGG | + | chr3.3:84679383-84679402 | None:intergenic | 30.0% | |
| TCAATATAAGCAGAAAAACC+AGG | + | chr3.3:84679451-84679470 | None:intergenic | 30.0% | |
| TCCGTTGAAGAAATTATGAA+AGG | - | chr3.3:84679586-84679605 | MS.gene38680:intron | 30.0% | |
| TGAACACAAAAACAGATTTC+AGG | + | chr3.3:84679419-84679438 | None:intergenic | 30.0% | |
| TTGAATATGTCGTTCACATT+AGG | + | chr3.3:84679011-84679030 | None:intergenic | 30.0% | |
| TTTCAATGCTTTAACTACTC+AGG | - | chr3.3:84676976-84676995 | MS.gene38680:intron | 30.0% | |
| TTTCCCAAAATGTCTTAGAT+TGG | + | chr3.3:84678387-84678406 | None:intergenic | 30.0% | |
| ! | AAGATAATAGGTATTGTCCT+AGG | - | chr3.3:84678142-84678161 | MS.gene38680:intron | 30.0% |
| ! | ACCTCCTATTAAACTTTTGA+TGG | - | chr3.3:84677645-84677664 | MS.gene38680:intron | 30.0% |
| ! | TTTGAAAACAGTTTTCTGCT+TGG | + | chr3.3:84679234-84679253 | None:intergenic | 30.0% |
| !! | AACTCTAAGGGATTCAATTT+TGG | - | chr3.3:84676695-84676714 | MS.gene38680:CDS | 30.0% |
| !! | CAATTTGATATAGCTTTGGA+CGG | - | chr3.3:84678894-84678913 | MS.gene38680:intron | 30.0% |
| !! | TAGTATTATTTTCAGGGGAA+GGG | - | chr3.3:84677544-84677563 | MS.gene38680:intron | 30.0% |
| !! | TTAGTATTATTTTCAGGGGA+AGG | - | chr3.3:84677543-84677562 | MS.gene38680:intron | 30.0% |
| !!! | GATTCAATTTTGGTTGTTTC+AGG | - | chr3.3:84676705-84676724 | MS.gene38680:intron | 30.0% |
| !!! | GTTTTGTTTTCGTAACTCTA+AGG | - | chr3.3:84676682-84676701 | MS.gene38680:CDS | 30.0% |
| AAATGTAATGCAGTAGCAAG+AGG | - | chr3.3:84678406-84678425 | MS.gene38680:intron | 35.0% | |
| AACATCCGTATTTCCATAAC+AGG | + | chr3.3:84679903-84679922 | None:intergenic | 35.0% | |
| AACTATCTATTTCATGGTGC+AGG | - | chr3.3:84680308-84680327 | MS.gene38680:intron | 35.0% | |
| AATAGGAGGTCAAACACATA+AGG | + | chr3.3:84677692-84677711 | None:intergenic | 35.0% | |
| ACATCCGTATTTCCATAACA+GGG | + | chr3.3:84679902-84679921 | None:intergenic | 35.0% | |
| ACATGATTGGGCGAATTAAT+TGG | - | chr3.3:84677501-84677520 | MS.gene38680:intron | 35.0% | |
| AGTTACGAAAACAAAACGAG+AGG | + | chr3.3:84676679-84676698 | None:intergenic | 35.0% | |
| ATCTAGTCAAAGCTTCACAT+AGG | + | chr3.3:84678204-84678223 | None:intergenic | 35.0% | |
| CACAAATACTTGACTTTCTC+AGG | - | chr3.3:84680179-84680198 | MS.gene38680:intron | 35.0% | |
| CAGCCAATTTGATATAGCTT+TGG | - | chr3.3:84678890-84678909 | MS.gene38680:intron | 35.0% | |
| CGTCCAAAGCTATATCAAAT+TGG | + | chr3.3:84678896-84678915 | None:intergenic | 35.0% | |
| CTTCATAAAGACAAGAAGTG+TGG | + | chr3.3:84676472-84676491 | None:intergenic | 35.0% | |
| CTTGCACTTGATGAGAAATA+TGG | - | chr3.3:84676890-84676909 | MS.gene38680:intron | 35.0% | |
| CTTGGACATGATAAGAAGAA+AGG | + | chr3.3:84680363-84680382 | None:intergenic | 35.0% | |
| GCCATCAAAAGTTTAATAGG+AGG | + | chr3.3:84677649-84677668 | None:intergenic | 35.0% | |
| GGTAAAGTAAGAGGACTTTA+TGG | - | chr3.3:84678333-84678352 | MS.gene38680:intron | 35.0% | |
| GTATCAAAAACACAGCTGAA+GGG | + | chr3.3:84679496-84679515 | None:intergenic | 35.0% | |
| TAAGCAGAAAAACCAGGTAA+AGG | + | chr3.3:84679445-84679464 | None:intergenic | 35.0% | |
| TATCAAAAACACAGCTGAAG+GGG | + | chr3.3:84679495-84679514 | None:intergenic | 35.0% | |
| TATCCAAAACTTGGAGAAGA+TGG | + | chr3.3:84677574-84677593 | None:intergenic | 35.0% | |
| TCCAAAAGAGTTTGAACACT+GGG | - | chr3.3:84677745-84677764 | MS.gene38680:intron | 35.0% | |
| TCGATTGATGAAACATACTG+AGG | - | chr3.3:84676850-84676869 | MS.gene38680:intron | 35.0% | |
| TGAATGTTGACAAGTTTGTC+CGG | + | chr3.3:84678734-84678753 | None:intergenic | 35.0% | |
| TGCAAGTGCAACAATTAAGT+CGG | + | chr3.3:84679879-84679898 | None:intergenic | 35.0% | |
| TGTATCAAAAACACAGCTGA+AGG | + | chr3.3:84679497-84679516 | None:intergenic | 35.0% | |
| TGTTATGGAAATACGGATGT+TGG | - | chr3.3:84679902-84679921 | MS.gene38680:CDS | 35.0% | |
| TTAGCATGGAACAATAACTC+TGG | + | chr3.3:84680127-84680146 | None:intergenic | 35.0% | |
| TTCTTGTCTTTATGAAGCCA+AGG | - | chr3.3:84676475-84676494 | MS.gene38680:intron | 35.0% | |
| TTGATTGTGTTGAGAACTGT+GGG | - | chr3.3:84676767-84676786 | MS.gene38680:intron | 35.0% | |
| TTGGAACTTTCTATCAACTG+GGG | + | chr3.3:84679381-84679400 | None:intergenic | 35.0% | |
| TTGTTCCATGCTAACATTGA+AGG | - | chr3.3:84680133-84680152 | MS.gene38680:intron | 35.0% | |
| TTTCGTAAGCTCTCCAAAAT+AGG | - | chr3.3:84677165-84677184 | MS.gene38680:CDS | 35.0% | |
| ! | AGAATGCTTGTTACAAATGC+AGG | - | chr3.3:84680452-84680471 | MS.gene38680:CDS | 35.0% |
| ! | CATAAGTGTCTTAGCTCTTA+AGG | - | chr3.3:84679826-84679845 | MS.gene38680:intron | 35.0% |
| ! | CGAATGTTTTGTAGAGCTTA+TGG | - | chr3.3:84677102-84677121 | MS.gene38680:CDS | 35.0% |
| ! | GAATGCTTGTTACAAATGCA+GGG | - | chr3.3:84680453-84680472 | MS.gene38680:CDS | 35.0% |
| ! | TATCCATCTTCTCCAAGTTT+TGG | - | chr3.3:84677568-84677587 | MS.gene38680:intron | 35.0% |
| ! | TATGTGAAGCTTTGACTAGA+TGG | - | chr3.3:84678203-84678222 | MS.gene38680:intron | 35.0% |
| ! | TTGAAATACTCCAGTCTTGT+GGG | - | chr3.3:84679108-84679127 | MS.gene38680:intron | 35.0% |
| ! | TTGTGTGTTTTACTGCAGTT+GGG | - | chr3.3:84676808-84676827 | MS.gene38680:intron | 35.0% |
| ! | TTTGTGTGTTTTACTGCAGT+TGG | - | chr3.3:84676807-84676826 | MS.gene38680:intron | 35.0% |
| !! | AGAGTTGTTTTGCAAAATGC+TGG | - | chr3.3:84679926-84679945 | MS.gene38680:CDS | 35.0% |
| !! | TTATTGTACAAGAGCATCAC+TGG | + | chr3.3:84679640-84679659 | None:intergenic | 35.0% |
| !!! | AATTTTGGTTGTTTCAGGGT+TGG | - | chr3.3:84676710-84676729 | MS.gene38680:intron | 35.0% |
| !!! | ACTGTGGGTTTTGATTTGTT+AGG | - | chr3.3:84676782-84676801 | MS.gene38680:intron | 35.0% |
| !!! | ATGCATGTGTTGTTTTGCAA+GGG | - | chr3.3:84679795-84679814 | MS.gene38680:intron | 35.0% |
| !!! | CTGTGGGTTTTGATTTGTTA+GGG | - | chr3.3:84676783-84676802 | MS.gene38680:intron | 35.0% |
| !!! | TATGCATGTGTTGTTTTGCA+AGG | - | chr3.3:84679794-84679813 | MS.gene38680:intron | 35.0% |
| AATAACCATCTTGTCTGGGA+AGG | + | chr3.3:84679763-84679782 | None:intergenic | 40.0% | |
| ACACAAGTCAAGATAGGCTT+AGG | - | chr3.3:84678074-84678093 | MS.gene38680:CDS | 40.0% | |
| ACACTTATTTCCCACAAGAC+TGG | + | chr3.3:84679121-84679140 | None:intergenic | 40.0% | |
| ACATGAACTTCAAAGACGCA+TGG | + | chr3.3:84678521-84678540 | None:intergenic | 40.0% | |
| ACTTTCTCTCCTTCATCGTA+AGG | + | chr3.3:84676440-84676459 | None:intergenic | 40.0% | |
| AGGATAGTCCATATCTAGAG+GGG | - | chr3.3:84678226-84678245 | MS.gene38680:intron | 40.0% | |
| ATAACCATCTTGTCTGGGAA+GGG | + | chr3.3:84679762-84679781 | None:intergenic | 40.0% | |
| ATCGCTCCTTCTGCTATATA+TGG | - | chr3.3:84679697-84679716 | MS.gene38680:intron | 40.0% | |
| CAAAAACAGATTTCAGGCAC+AGG | + | chr3.3:84679413-84679432 | None:intergenic | 40.0% | |
| CATGAACTTCAAAGACGCAT+GGG | + | chr3.3:84678520-84678539 | None:intergenic | 40.0% | |
| CATTCACATTGTTCAGGAAC+TGG | - | chr3.3:84677457-84677476 | MS.gene38680:intron | 40.0% | |
| CCAAAAGAGTTTGAACACTG+GGG | - | chr3.3:84677746-84677765 | MS.gene38680:intron | 40.0% | |
| CCTGTTTGGATAAACAGCTA+AGG | + | chr3.3:84677339-84677358 | None:intergenic | 40.0% | |
| CCTTAGCTGTTTATCCAAAC+AGG | - | chr3.3:84677336-84677355 | MS.gene38680:intron | 40.0% | |
| CTTCCATGTTCAACTTGTAG+AGG | - | chr3.3:84677383-84677402 | MS.gene38680:intron | 40.0% | |
| GAAAGTCAAGTATTTGTGCC+TGG | + | chr3.3:84680177-84680196 | None:intergenic | 40.0% | |
| GAGGATAGTCCATATCTAGA+GGG | - | chr3.3:84678225-84678244 | MS.gene38680:intron | 40.0% | |
| GCAAGACATTCACATTGTTC+AGG | - | chr3.3:84677451-84677470 | MS.gene38680:intron | 40.0% | |
| GTCCAAAAGAGTTTGAACAC+TGG | - | chr3.3:84677744-84677763 | MS.gene38680:intron | 40.0% | |
| GTGAGTTTAGATCAGAAGTG+TGG | + | chr3.3:84678278-84678297 | None:intergenic | 40.0% | |
| GTTGAAATACTCCAGTCTTG+TGG | - | chr3.3:84679107-84679126 | MS.gene38680:intron | 40.0% | |
| GTTGATTGTGTTGAGAACTG+TGG | - | chr3.3:84676766-84676785 | MS.gene38680:intron | 40.0% | |
| GTTTATTACTCATCTCGGCA+AGG | - | chr3.3:84678796-84678815 | MS.gene38680:intron | 40.0% | |
| TAGCAATAAACCCATGTGTG+AGG | + | chr3.3:84679966-84679985 | None:intergenic | 40.0% | |
| TATCGTTTGGACAAGCTTCT+TGG | + | chr3.3:84679678-84679697 | None:intergenic | 40.0% | |
| TATCTGACCATTCGAACTCT+TGG | + | chr3.3:84676951-84676970 | None:intergenic | 40.0% | |
| TCAGCACCATATATAGCAGA+AGG | + | chr3.3:84679706-84679725 | None:intergenic | 40.0% | |
| TCCTTCATCGTAAGGAGAAA+CGG | + | chr3.3:84676432-84676451 | None:intergenic | 40.0% | |
| TGCACCCTGTTATGGAAATA+CGG | - | chr3.3:84679895-84679914 | MS.gene38680:CDS | 40.0% | |
| TGCTGTTCTCAACATCTTCT+TGG | + | chr3.3:84680381-84680400 | None:intergenic | 40.0% | |
| TGGGCGAATTAATTGGTACT+TGG | - | chr3.3:84677508-84677527 | MS.gene38680:intron | 40.0% | |
| TTACTGCAGTTGGGATGAAT+GGG | - | chr3.3:84676817-84676836 | MS.gene38680:intron | 40.0% | |
| TTGATTTCGTCCACTCTAGT+TGG | + | chr3.3:84677873-84677892 | None:intergenic | 40.0% | |
| TTGTGTTCATGTCCTTTACC+TGG | - | chr3.3:84679430-84679449 | MS.gene38680:intron | 40.0% | |
| TTTACTGCAGTTGGGATGAA+TGG | - | chr3.3:84676816-84676835 | MS.gene38680:intron | 40.0% | |
| TTTGCAAAATGCTGGCCATT+TGG | - | chr3.3:84679934-84679953 | MS.gene38680:CDS | 40.0% | |
| ! | CATGTTTTGTCCCTTGTATG+AGG | - | chr3.3:84678614-84678633 | MS.gene38680:intron | 40.0% |
| ! | GAGCATTTGTTACGTCTCTT+TGG | - | chr3.3:84679724-84679743 | MS.gene38680:intron | 40.0% |
| ! | GATAAGGATGTTATGATGGG+TGG | - | chr3.3:84678041-84678060 | MS.gene38680:CDS | 40.0% |
| ACGAGAAAGGAAGAAGACCT+TGG | + | chr3.3:84676495-84676514 | None:intergenic | 45.0% | |
| ATCTCGGCAAGGTAGCAATA+TGG | - | chr3.3:84678807-84678826 | MS.gene38680:intron | 45.0% | |
| CAGGCACAGGCTAATCATAT+TGG | + | chr3.3:84679400-84679419 | None:intergenic | 45.0% | |
| CATTCCCTCACCTCATACAA+GGG | + | chr3.3:84678627-84678646 | None:intergenic | 45.0% | |
| CGACACATTGATAGAACTCC+AGG | - | chr3.3:84680156-84680175 | MS.gene38680:intron | 45.0% | |
| GGAAAAACTTGCGGTTCTTC+CGG | - | chr3.3:84678712-84678731 | MS.gene38680:intron | 45.0% | |
| GGAGGATAGTCCATATCTAG+AGG | - | chr3.3:84678224-84678243 | MS.gene38680:intron | 45.0% | |
| GGATAGTCCATATCTAGAGG+GGG | - | chr3.3:84678227-84678246 | MS.gene38680:intron | 45.0% | |
| GGTGGTACACAAGTCAAGAT+AGG | - | chr3.3:84678068-84678087 | MS.gene38680:CDS | 45.0% | |
| GTTGTATGGGAGTCAGTGTT+GGG | - | chr3.3:84677978-84677997 | MS.gene38680:intron | 45.0% | |
| TCCACTCTAGTTGGACTCTA+TGG | + | chr3.3:84677864-84677883 | None:intergenic | 45.0% | |
| TCCATAGAGTCCAACTAGAG+TGG | - | chr3.3:84677860-84677879 | MS.gene38680:intron | 45.0% | |
| TCCGTTTCTCCTTACGATGA+AGG | - | chr3.3:84676428-84676447 | MS.gene38680:intron | 45.0% | |
| TGGATCGTAAGTTCATGCTG+AGG | - | chr3.3:84679061-84679080 | MS.gene38680:intron | 45.0% | |
| TGTCGCCTTCAATGTTAGCA+TGG | + | chr3.3:84680141-84680160 | None:intergenic | 45.0% | |
| TGTTGTATGGGAGTCAGTGT+TGG | - | chr3.3:84677977-84677996 | MS.gene38680:intron | 45.0% | |
| TTGGAATCAGCCTCACACAT+GGG | - | chr3.3:84679953-84679972 | MS.gene38680:CDS | 45.0% | |
| TTGTCCCTTGTATGAGGTGA+GGG | - | chr3.3:84678620-84678639 | MS.gene38680:intron | 45.0% | |
| TTTGTCCCTTGTATGAGGTG+AGG | - | chr3.3:84678619-84678638 | MS.gene38680:intron | 45.0% | |
| ! | ACGCCTCTACAAGTTGAACA+TGG | + | chr3.3:84677389-84677408 | None:intergenic | 45.0% |
| ! | CCCCAGTGTTCAAACTCTTT+TGG | + | chr3.3:84677749-84677768 | None:intergenic | 45.0% |
| ! | GTGAAGCTTTGACTAGATGG+AGG | - | chr3.3:84678206-84678225 | MS.gene38680:intron | 45.0% |
| ! | TCAGAAGTGTGGTATGTGCT+AGG | + | chr3.3:84678267-84678286 | None:intergenic | 45.0% |
| ! | TCGTTCACATTAGGAGTACG+AGG | + | chr3.3:84679002-84679021 | None:intergenic | 45.0% |
| ! | TGTGTGAGGCTGATTCCAAA+TGG | + | chr3.3:84679952-84679971 | None:intergenic | 45.0% |
| ! | TTTGGAATCAGCCTCACACA+TGG | - | chr3.3:84679952-84679971 | MS.gene38680:CDS | 45.0% |
| !! | AAGGATGTTATGATGGGTGG+TGG | - | chr3.3:84678044-84678063 | MS.gene38680:CDS | 45.0% |
| !! | AAATAATTCAATAAATTATA+TGG | + | chr3.3:84677363-84677382 | None:intergenic | 5.0% |
| !!! | AATTATTATATATATCATTT+TGG | - | chr3.3:84679147-84679166 | MS.gene38680:intron | 5.0% |
| AAGAATGCCAGAAAGCCTCG+TGG | - | chr3.3:84676920-84676939 | MS.gene38680:intron | 50.0% | |
| CCATTCCCTCACCTCATACA+AGG | + | chr3.3:84678628-84678647 | None:intergenic | 50.0% | |
| CCTTGTATGAGGTGAGGGAA+TGG | - | chr3.3:84678625-84678644 | MS.gene38680:intron | 50.0% | |
| GAGCATGCAACGAGAAAGCT+TGG | - | chr3.3:84678171-84678190 | MS.gene38680:intron | 50.0% | |
| GCAGAAGGAGCGATATCGTT+TGG | + | chr3.3:84679691-84679710 | None:intergenic | 50.0% | |
| GGATCGTCCAAGAGTTCGAA+TGG | - | chr3.3:84676941-84676960 | MS.gene38680:intron | 50.0% | |
| GTTGCACTTGCACCCTGTTA+TGG | - | chr3.3:84679887-84679906 | MS.gene38680:CDS | 50.0% | |
| TAGTGTGCCCCCTCTAGATA+TGG | + | chr3.3:84678237-84678256 | None:intergenic | 50.0% | |
| TGCAGTTGGGATGAATGGGT+TGG | - | chr3.3:84676821-84676840 | MS.gene38680:intron | 50.0% | |
| TTAGCCCTTCCCAGACAAGA+TGG | - | chr3.3:84679755-84679774 | MS.gene38680:intron | 50.0% | |
| ! | GTTGCATGCTCGAAGTACCT+AGG | + | chr3.3:84678162-84678181 | None:intergenic | 50.0% |
| !! | GATGTTATGATGGGTGGTGG+TGG | - | chr3.3:84678047-84678066 | MS.gene38680:CDS | 50.0% |
| GAACTCTTGGACGATCCACG+AGG | + | chr3.3:84676938-84676957 | None:intergenic | 55.0% | |
| !! | GTTATGATGGGTGGTGGTGG+TGG | - | chr3.3:84678050-84678069 | MS.gene38680:CDS | 55.0% |
| GGACGATCCACGAGGCTTTC+TGG | + | chr3.3:84676930-84676949 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84676344 | 84680487 | 84676344 | ID=MS.gene38680 |
| chr3.3 | mRNA | 84676344 | 84680487 | 84676344 | ID=MS.gene38680.t1;Parent=MS.gene38680 |
| chr3.3 | exon | 84680335 | 84680487 | 84680335 | ID=MS.gene38680.t1.exon1;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84680335 | 84680487 | 84680335 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84680192 | 84680245 | 84680192 | ID=MS.gene38680.t1.exon2;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84680192 | 84680245 | 84680192 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84680091 | 84680104 | 84680091 | ID=MS.gene38680.t1.exon3;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84680091 | 84680104 | 84680091 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84679869 | 84680005 | 84679869 | ID=MS.gene38680.t1.exon4;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84679869 | 84680005 | 84679869 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84678372 | 84678412 | 84678372 | ID=MS.gene38680.t1.exon5;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84678372 | 84678412 | 84678372 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84678014 | 84678118 | 84678014 | ID=MS.gene38680.t1.exon6;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84678014 | 84678118 | 84678014 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84677765 | 84677844 | 84677765 | ID=MS.gene38680.t1.exon7;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84677765 | 84677844 | 84677765 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84677086 | 84677255 | 84677086 | ID=MS.gene38680.t1.exon8;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84677086 | 84677255 | 84677086 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84676631 | 84676715 | 84676631 | ID=MS.gene38680.t1.exon9;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84676631 | 84676715 | 84676631 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| chr3.3 | exon | 84676344 | 84676392 | 84676344 | ID=MS.gene38680.t1.exon10;Parent=MS.gene38680.t1 |
| chr3.3 | CDS | 84676344 | 84676392 | 84676344 | ID=cds.MS.gene38680.t1;Parent=MS.gene38680.t1 |
| Gene Sequence |
| Protein sequence |
