Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38719.t1 | XP_024633407.1 | 96.8 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 1.20E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38719.t1 | Q9ZST9 | 84.5 | 252 | 39 | 0 | 1 | 252 | 1 | 252 | 2.9e-118 | 426.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38719.t1 | G7J6C8 | 96.8 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 8.6e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049627 | MS.gene38719 | 0.825362 | 4.88E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene38719 | 0.81221 | 4.75E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene38719 | 0.834431 | 3.01E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene38719 | 0.831187 | 1.92E-55 | -1.69E-46 |
| MS.gene050518 | MS.gene38719 | 0.842875 | 1.98E-58 | -1.69E-46 |
| MS.gene050876 | MS.gene38719 | 0.835009 | 2.15E-56 | -1.69E-46 |
| MS.gene05087 | MS.gene38719 | 0.89116 | 5.12E-74 | -1.69E-46 |
| MS.gene050904 | MS.gene38719 | 0.813093 | 3.05E-51 | -1.69E-46 |
| MS.gene054638 | MS.gene38719 | 0.973602 | 1.05E-136 | -1.69E-46 |
| MS.gene055634 | MS.gene38719 | 0.841292 | 5.19E-58 | -1.69E-46 |
| MS.gene055849 | MS.gene38719 | 0.824793 | 6.66E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene38719 | 0.831735 | 1.41E-55 | -1.69E-46 |
| MS.gene057148 | MS.gene38719 | 0.815259 | 1.01E-51 | -1.69E-46 |
| MS.gene057872 | MS.gene38719 | 0.801043 | 1.08E-48 | -1.69E-46 |
| MS.gene058335 | MS.gene38719 | 0.824056 | 9.93E-54 | -1.69E-46 |
| MS.gene058719 | MS.gene38719 | 0.814534 | 1.47E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene38719 | 0.801809 | 7.56E-49 | -1.69E-46 |
| MS.gene059026 | MS.gene38719 | 0.838468 | 2.82E-57 | -1.69E-46 |
| MS.gene059079 | MS.gene38719 | 0.810176 | 1.31E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene38719 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene38719 | 0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene061171 | MS.gene38719 | 0.807064 | 6.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38719.t1 | MTR_3g101630 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| MS.gene38719.t1 | MTR_3g101630 | 96.257 | 187 | 7 | 0 | 1 | 187 | 1 | 187 | 1.08e-133 | 375 |
| MS.gene38719.t1 | MTR_8g081030 | 40.254 | 236 | 111 | 7 | 20 | 240 | 16 | 236 | 6.80e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38719.t1 | AT4G33350 | 64.552 | 268 | 74 | 5 | 1 | 250 | 1 | 265 | 1.15e-119 | 342 |
| MS.gene38719.t1 | AT4G33350 | 57.836 | 268 | 66 | 5 | 1 | 250 | 1 | 239 | 1.40e-101 | 295 |
| MS.gene38719.t1 | AT3G23710 | 42.211 | 199 | 101 | 6 | 52 | 240 | 109 | 303 | 3.79e-44 | 151 |
| MS.gene38719.t1 | AT3G23710 | 42.143 | 140 | 77 | 2 | 52 | 187 | 109 | 248 | 2.48e-30 | 114 |
Find 63 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACCTGTTCAAGAGTTAT+TGG | 0.204138 | 3.3:-84159932 | None:intergenic |
| TACCAGATCCACTTCAAATA+AGG | 0.261652 | 3.3:+84160590 | MS.gene38719:CDS |
| TCAACATATACAAGAAATTA+AGG | 0.262989 | 3.3:+84162751 | MS.gene38719:CDS |
| TTGCTTACAGTCAGAACTTT+TGG | 0.296051 | 3.3:+84161285 | MS.gene38719:intron |
| TGCGAGTGTGAGATTGAATT+AGG | 0.307685 | 3.3:-84159591 | None:intergenic |
| GGAAAGCTTCAGCGTCTTCT+TGG | 0.311162 | 3.3:-84159765 | None:intergenic |
| GGAGGTTCCGGCGAGGGATT+TGG | 0.319748 | 3.3:-84159656 | None:intergenic |
| TATTGAACAGGAACTATCTA+AGG | 0.328688 | 3.3:+84161977 | MS.gene38719:CDS |
| AGGAACTATCTAAGGTTTCC+AGG | 0.374565 | 3.3:+84161985 | MS.gene38719:CDS |
| TCCATCAAAACCTTCCTTGC+TGG | 0.381167 | 3.3:-84160900 | None:intergenic |
| CAGATGAGTGAAAAGAATTC+CGG | 0.382067 | 3.3:+84162686 | MS.gene38719:intron |
| TTGCCCTGTATATTTCTCTA+AGG | 0.385806 | 3.3:+84161333 | MS.gene38719:CDS |
| ATTCTATACCATTATTTGCT+TGG | 0.386433 | 3.3:-84162030 | None:intergenic |
| TTCCTTATTTGAAGTGGATC+TGG | 0.389220 | 3.3:-84160592 | None:intergenic |
| CAAGGTGGTTACAGTGTTGA+TGG | 0.389724 | 3.3:-84159531 | None:intergenic |
| CGCTGAAGCTTTCCTTGCTC+AGG | 0.397790 | 3.3:+84159774 | MS.gene38719:CDS |
| CAAACCTTAGAGAAATATAC+AGG | 0.430319 | 3.3:-84161337 | None:intergenic |
| GTTAAAGCGGCGGCGAAAGC+GGG | 0.432701 | 3.3:-84159619 | None:intergenic |
| TGTTCCAATAACTCTTGAAC+AGG | 0.433983 | 3.3:+84159928 | MS.gene38719:CDS |
| GTGAGATTGAATTAGGGTTC+CGG | 0.435865 | 3.3:-84159584 | None:intergenic |
| TGGAGTTTCCAAGCAAATAA+TGG | 0.452005 | 3.3:+84162022 | MS.gene38719:CDS |
| GACGGTGTAAACGGAGGTTC+CGG | 0.452524 | 3.3:-84159668 | None:intergenic |
| GCGAGTGTGAGATTGAATTA+GGG | 0.455909 | 3.3:-84159590 | None:intergenic |
| AGCGGCGGCGAAAGCGGGGT+TGG | 0.456106 | 3.3:-84159614 | None:intergenic |
| CTCAGAGCCGCCAGCAAGGA+AGG | 0.460599 | 3.3:+84160890 | MS.gene38719:CDS |
| GAGGGATTTGGCGACGTTGT+TGG | 0.462263 | 3.3:-84159644 | None:intergenic |
| GGAACTACTGACGGTGTAAA+CGG | 0.467319 | 3.3:-84159677 | None:intergenic |
| GTATACTTGTTGAAGGTTGA+AGG | 0.475034 | 3.3:+84160550 | MS.gene38719:CDS |
| AGTGCATTCCTTATTTGAAG+TGG | 0.479288 | 3.3:-84160598 | None:intergenic |
| GTTATAGGTATACTTGTTGA+AGG | 0.482950 | 3.3:+84160543 | MS.gene38719:intron |
| CATCAGAACGAATTCATTGT+TGG | 0.485434 | 3.3:-84159698 | None:intergenic |
| TGGACAGGAAGATATTGAAC+AGG | 0.507901 | 3.3:+84161965 | MS.gene38719:intron |
| GAAGTGGATCTGGTAAGAAT+CGG | 0.513973 | 3.3:-84160582 | None:intergenic |
| ATTATTTGCTTGGAAACTCC+AGG | 0.515291 | 3.3:-84162020 | None:intergenic |
| GCTGAAGGTGCTAAGTCCAT+TGG | 0.515881 | 3.3:+84159727 | MS.gene38719:CDS |
| TTCATTGTTGGAACTACTGA+CGG | 0.538242 | 3.3:-84159686 | None:intergenic |
| TTTCTTGTATATGTTGAGAA+CGG | 0.540120 | 3.3:-84162745 | None:intergenic |
| TCCAGGGTATCTAAAAGTCC+TGG | 0.546198 | 3.3:+84162002 | MS.gene38719:CDS |
| ACTTCAAATAAGGAATGCAC+TGG | 0.568685 | 3.3:+84160600 | MS.gene38719:CDS |
| GTAAACGGAGGTTCCGGCGA+GGG | 0.577581 | 3.3:-84159662 | None:intergenic |
| GCGAAAGCAAAGCAATCCAA+TGG | 0.584246 | 3.3:-84159743 | None:intergenic |
| TGAATTTCGAGGCAATGCTA+AGG | 0.584914 | 3.3:+84159904 | MS.gene38719:CDS |
| TGTCTTCAAAACGAGTTGCA+AGG | 0.588693 | 3.3:-84159549 | None:intergenic |
| AGTTAAAGCGGCGGCGAAAG+CGG | 0.589283 | 3.3:-84159620 | None:intergenic |
| GGACTTAGCACCTTCAGCAT+CGG | 0.600686 | 3.3:-84159722 | None:intergenic |
| GACGTTGTTGGAAGTTAAAG+CGG | 0.609660 | 3.3:-84159632 | None:intergenic |
| GGAACTATCTAAGGTTTCCA+GGG | 0.610500 | 3.3:+84161986 | MS.gene38719:CDS |
| TCAGCTCAGAGCCGCCAGCA+AGG | 0.614025 | 3.3:+84160886 | MS.gene38719:intron |
| TCAAATAAGGAATGCACTGG+AGG | 0.614598 | 3.3:+84160603 | MS.gene38719:CDS |
| AGAGGAACGTTACCTGAGCA+AGG | 0.617638 | 3.3:-84159786 | None:intergenic |
| AACGTCGCCAAATCCCTCGC+CGG | 0.619652 | 3.3:+84159649 | MS.gene38719:CDS |
| AACCGCGAAAATGATAGAAG+CGG | 0.620119 | 3.3:-84159505 | None:intergenic |
| TTAAAGCGGCGGCGAAAGCG+GGG | 0.621674 | 3.3:-84159618 | None:intergenic |
| GAGTGAAAAGAATTCCGGAT+GGG | 0.636301 | 3.3:+84162691 | MS.gene38719:CDS |
| ATCAAAACCTTCCTTGCTGG+CGG | 0.637557 | 3.3:-84160897 | None:intergenic |
| TGAGTGAAAAGAATTCCGGA+TGG | 0.637585 | 3.3:+84162690 | MS.gene38719:CDS |
| AAATGGAGTCACAAGGACAG+TGG | 0.653796 | 3.3:+84159479 | None:intergenic |
| TGTAAACGGAGGTTCCGGCG+AGG | 0.668767 | 3.3:-84159663 | None:intergenic |
| GTTCTGATGTCCGATGCTGA+AGG | 0.674395 | 3.3:+84159712 | MS.gene38719:CDS |
| GTTGTTGGAAGTTAAAGCGG+CGG | 0.684073 | 3.3:-84159629 | None:intergenic |
| CTTCAAAACGAGTTGCAAGG+TGG | 0.698132 | 3.3:-84159546 | None:intergenic |
| AAACCTTAGAGAAATATACA+GGG | 0.722468 | 3.3:-84161336 | None:intergenic |
| ACTACTGACGGTGTAAACGG+AGG | 0.722610 | 3.3:-84159674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTAAATTAAAAATAG+AGG | - | chr3.3:84161429-84161448 | None:intergenic | 10.0% |
| !! | ATTTCTAAATTAAAAATAGA+GGG | - | chr3.3:84161428-84161447 | None:intergenic | 10.0% |
| !!! | AATAAAGTTAAATTGTTTTT+TGG | - | chr3.3:84160198-84160217 | None:intergenic | 10.0% |
| !!! | TTTATGTTTCTTTAATTTTA+TGG | + | chr3.3:84162182-84162201 | MS.gene38719:intron | 10.0% |
| !! | ATAATTTATCATTCATTTGA+AGG | + | chr3.3:84162497-84162516 | MS.gene38719:intron | 15.0% |
| !! | ATTGGTATAGTTAATAATAT+AGG | + | chr3.3:84162619-84162638 | MS.gene38719:intron | 15.0% |
| !! | ATTTCATTGATACATAAATT+AGG | - | chr3.3:84160311-84160330 | None:intergenic | 15.0% |
| !! | TTCAATTATGATAATTAAAC+AGG | + | chr3.3:84162539-84162558 | MS.gene38719:intron | 15.0% |
| !!! | TATTTTTAATTACGCAATTT+TGG | + | chr3.3:84161460-84161479 | MS.gene38719:intron | 15.0% |
| !! | AAAATTGAAATCAGAACATA+AGG | - | chr3.3:84162402-84162421 | None:intergenic | 20.0% |
| !! | AAATGTGATTATTAGTCAAT+AGG | - | chr3.3:84161267-84161286 | None:intergenic | 20.0% |
| !! | ATATAGATATGAATTCAAAG+GGG | - | chr3.3:84160348-84160367 | None:intergenic | 20.0% |
| !! | ATCTTCATTGTTAAACATTT+AGG | + | chr3.3:84161781-84161800 | MS.gene38719:intron | 20.0% |
| !! | ATTATGATAATTAAACAGGT+TGG | + | chr3.3:84162543-84162562 | MS.gene38719:intron | 20.0% |
| !! | CATATAGATATGAATTCAAA+GGG | - | chr3.3:84160349-84160368 | None:intergenic | 20.0% |
| !! | CTTTGAATTCATATCTATAT+GGG | + | chr3.3:84160348-84160367 | MS.gene38719:intron | 20.0% |
| !! | TAATAATATAGGAAGCAATT+CGG | + | chr3.3:84162630-84162649 | MS.gene38719:intron | 20.0% |
| !! | TCAACATATACAAGAAATTA+AGG | + | chr3.3:84162751-84162770 | MS.gene38719:CDS | 20.0% |
| !! | TCATCATCATAGTTAAAAAT+TGG | - | chr3.3:84161506-84161525 | None:intergenic | 20.0% |
| !! | TCTTCATTGTTAAACATTTA+GGG | + | chr3.3:84161782-84161801 | MS.gene38719:intron | 20.0% |
| !!! | ATAAAAACACATTTTTGGAT+GGG | + | chr3.3:84162205-84162224 | MS.gene38719:intron | 20.0% |
| !!! | ATAAATTTTGTTAAACCGTT+TGG | + | chr3.3:84160092-84160111 | MS.gene38719:intron | 20.0% |
| !!! | TAAATTTTGTTAAACCGTTT+GGG | + | chr3.3:84160093-84160112 | MS.gene38719:intron | 20.0% |
| !!! | TAATAGTAAAGTTTGCTTAT+TGG | + | chr3.3:84162601-84162620 | MS.gene38719:intron | 20.0% |
| !!! | TATGGATAAAAACACATTTT+TGG | + | chr3.3:84162200-84162219 | MS.gene38719:intron | 20.0% |
| !!! | TCAGTTTTAAATGTAAATCA+TGG | + | chr3.3:84160734-84160753 | MS.gene38719:intron | 20.0% |
| !!! | TTTTTGAAGCATAATAAGTA+TGG | + | chr3.3:84160484-84160503 | MS.gene38719:intron | 20.0% |
| ! | AAAAAACAAATTACTGAGAG+AGG | - | chr3.3:84159807-84159826 | None:intergenic | 25.0% |
| ! | AAACCTTAGAGAAATATACA+GGG | - | chr3.3:84161339-84161358 | None:intergenic | 25.0% |
| ! | ATACATAAATTAGGCACTTA+TGG | - | chr3.3:84160302-84160321 | None:intergenic | 25.0% |
| ! | ATTAACCCTAAATCTTAGTT+AGG | + | chr3.3:84161890-84161909 | MS.gene38719:intron | 25.0% |
| ! | ATTCTATACCATTATTTGCT+TGG | - | chr3.3:84162033-84162052 | None:intergenic | 25.0% |
| ! | CAGATACTAAAATAGTTTGA+TGG | - | chr3.3:84161180-84161199 | None:intergenic | 25.0% |
| ! | CCATATAGATATGAATTCAA+AGG | - | chr3.3:84160350-84160369 | None:intergenic | 25.0% |
| ! | CCTTTGAATTCATATCTATA+TGG | + | chr3.3:84160347-84160366 | MS.gene38719:intron | 25.0% |
| ! | GCTAGAATGAAATGAAAAAT+AGG | + | chr3.3:84161821-84161840 | MS.gene38719:intron | 25.0% |
| ! | TAACATATAAATTCCAAGAC+TGG | + | chr3.3:84161139-84161158 | MS.gene38719:intron | 25.0% |
| ! | TATAGATATGAATTCAAAGG+GGG | - | chr3.3:84160347-84160366 | None:intergenic | 25.0% |
| ! | TATATCAGTAGCTATAAGTT+TGG | + | chr3.3:84161049-84161068 | MS.gene38719:intron | 25.0% |
| ! | TGCGTAATTAAAAATATCGA+GGG | - | chr3.3:84161456-84161475 | None:intergenic | 25.0% |
| ! | TGTGTAATACAAAAAACACT+CGG | + | chr3.3:84161704-84161723 | MS.gene38719:intron | 25.0% |
| ! | TTCAAAAAATATCTGATTGC+AGG | - | chr3.3:84160472-84160491 | None:intergenic | 25.0% |
| ! | TTGCGTAATTAAAAATATCG+AGG | - | chr3.3:84161457-84161476 | None:intergenic | 25.0% |
| ! | TTTCTTGTATATGTTGAGAA+CGG | - | chr3.3:84162748-84162767 | None:intergenic | 25.0% |
| !! | ACATGTTTTCTTGAATAAAC+AGG | + | chr3.3:84162338-84162357 | MS.gene38719:intron | 25.0% |
| !! | ACTGTTTTCATAAACTATCT+TGG | - | chr3.3:84160140-84160159 | None:intergenic | 25.0% |
| !! | ATATGATAGTTTTCGTTTGT+TGG | + | chr3.3:84161937-84161956 | MS.gene38719:intron | 25.0% |
| !! | CATGTTTTCTTGAATAAACA+GGG | + | chr3.3:84162339-84162358 | MS.gene38719:intron | 25.0% |
| !!! | ATTTGTTTTAGTGCTATAAG+TGG | + | chr3.3:84162150-84162169 | MS.gene38719:intron | 25.0% |
| !!! | GATAAAAACACATTTTTGGA+TGG | + | chr3.3:84162204-84162223 | MS.gene38719:intron | 25.0% |
| !!! | GATGATGAAAATACTAGTTT+TGG | - | chr3.3:84160672-84160691 | None:intergenic | 25.0% |
| !!! | GATTGCTTTTAATTCACTAA+GGG | + | chr3.3:84160046-84160065 | MS.gene38719:intron | 25.0% |
| !!! | GTTTTAAATGTAAATCATGG+AGG | + | chr3.3:84160737-84160756 | MS.gene38719:intron | 25.0% |
| !!! | TTCAAATTGTTATTTTCGCA+TGG | - | chr3.3:84162237-84162256 | None:intergenic | 25.0% |
| !!! | TTTTAACTATGATGATGATG+TGG | + | chr3.3:84161508-84161527 | MS.gene38719:intron | 25.0% |
| AAAAATCAAATCATCCCATC+CGG | - | chr3.3:84162708-84162727 | None:intergenic | 30.0% | |
| AACAACTACACCAACTTAAT+GGG | + | chr3.3:84161647-84161666 | MS.gene38719:intron | 30.0% | |
| AACAAGTATACCTATAACAC+AGG | - | chr3.3:84160541-84160560 | None:intergenic | 30.0% | |
| ACATGCCTAACTAAGATTTA+GGG | - | chr3.3:84161898-84161917 | None:intergenic | 30.0% | |
| AGAAAACATACCTGAAAAAC+AGG | - | chr3.3:84160929-84160948 | None:intergenic | 30.0% | |
| AGAAAAGTTGTTACAGATAC+AGG | - | chr3.3:84160517-84160536 | None:intergenic | 30.0% | |
| AGATGTACTGAAAAAAATGG+AGG | + | chr3.3:84162575-84162594 | MS.gene38719:CDS | 30.0% | |
| ATATGTTACATACCATGCAT+TGG | - | chr3.3:84161127-84161146 | None:intergenic | 30.0% | |
| ATGAAATAAGTTCTCCCAAA+CGG | - | chr3.3:84160110-84160129 | None:intergenic | 30.0% | |
| ATGGAAAATGTTAGGAGAAA+AGG | + | chr3.3:84162310-84162329 | MS.gene38719:intron | 30.0% | |
| ATTTATATCAGACTCCAGAT+GGG | - | chr3.3:84161203-84161222 | None:intergenic | 30.0% | |
| CAAACCTTAGAGAAATATAC+AGG | - | chr3.3:84161340-84161359 | None:intergenic | 30.0% | |
| CAGGGAAATATTTATGTTTG+TGG | + | chr3.3:84162357-84162376 | MS.gene38719:intron | 30.0% | |
| CATAATATGCATGATAGTTG+CGG | + | chr3.3:84160772-84160791 | MS.gene38719:intron | 30.0% | |
| CGAAGATGTACTGAAAAAAA+TGG | + | chr3.3:84162572-84162591 | MS.gene38719:CDS | 30.0% | |
| GAACTATAGTCTCATACATA+GGG | - | chr3.3:84162261-84162280 | None:intergenic | 30.0% | |
| GTTTAACAATGAAGATGATG+CGG | - | chr3.3:84161777-84161796 | None:intergenic | 30.0% | |
| TAACAACTACACCAACTTAA+TGG | + | chr3.3:84161646-84161665 | MS.gene38719:intron | 30.0% | |
| TACATGCCTAACTAAGATTT+AGG | - | chr3.3:84161899-84161918 | None:intergenic | 30.0% | |
| TATTGAACAGGAACTATCTA+AGG | + | chr3.3:84161977-84161996 | MS.gene38719:CDS | 30.0% | |
| TATTTATATCAGACTCCAGA+TGG | - | chr3.3:84161204-84161223 | None:intergenic | 30.0% | |
| TGAACTATAGTCTCATACAT+AGG | - | chr3.3:84162262-84162281 | None:intergenic | 30.0% | |
| TGCATATTGACCATAATAGA+GGG | - | chr3.3:84161398-84161417 | None:intergenic | 30.0% | |
| TGGAAAATGTTAGGAGAAAA+GGG | + | chr3.3:84162311-84162330 | MS.gene38719:intron | 30.0% | |
| TGTAAATCATGGAGGAAAAT+AGG | + | chr3.3:84160745-84160764 | MS.gene38719:intron | 30.0% | |
| TTACCCGTTGTTAAAAGTAA+AGG | - | chr3.3:84160442-84160461 | None:intergenic | 30.0% | |
| TTGCATATTGACCATAATAG+AGG | - | chr3.3:84161399-84161418 | None:intergenic | 30.0% | |
| TTGTGTGCAACAATTATAAC+CGG | - | chr3.3:84160635-84160654 | None:intergenic | 30.0% | |
| TTTCTTCCATGGAAAATGTT+AGG | + | chr3.3:84162302-84162321 | MS.gene38719:intron | 30.0% | |
| ! | AGTTCTTTAGAGGACTAATT+GGG | + | chr3.3:84160965-84160984 | MS.gene38719:intron | 30.0% |
| ! | CTTCAGCATAATTGTTTTCA+AGG | - | chr3.3:84162125-84162144 | None:intergenic | 30.0% |
| ! | GTTATAGGTATACTTGTTGA+AGG | + | chr3.3:84160543-84160562 | MS.gene38719:intron | 30.0% |
| ! | TCAGGTATGTTTTCTTACTT+TGG | + | chr3.3:84160934-84160953 | MS.gene38719:intron | 30.0% |
| ! | TTTAGGGTTAATTGCACTTA+TGG | - | chr3.3:84161882-84161901 | None:intergenic | 30.0% |
| ! | TTTTCTCCTAACATTTTCCA+TGG | - | chr3.3:84162311-84162330 | None:intergenic | 30.0% |
| !! | AATGTTTTGCTCGTTGTTTT+AGG | + | chr3.3:84159865-84159884 | MS.gene38719:intron | 30.0% |
| !! | ACACCTTTACTTTTAACAAC+GGG | + | chr3.3:84160436-84160455 | MS.gene38719:intron | 30.0% |
| !! | CACACCTTTACTTTTAACAA+CGG | + | chr3.3:84160435-84160454 | MS.gene38719:intron | 30.0% |
| !! | CGATTGCTTTTAATTCACTA+AGG | + | chr3.3:84160045-84160064 | MS.gene38719:intron | 30.0% |
| !! | GTTTTCGTTTGTTGGTTAAA+TGG | + | chr3.3:84161945-84161964 | MS.gene38719:intron | 30.0% |
| !! | TTACTTTTAACAACGGGTAA+GGG | + | chr3.3:84160442-84160461 | MS.gene38719:intron | 30.0% |
| !! | TTTACTTTTAACAACGGGTA+AGG | + | chr3.3:84160441-84160460 | MS.gene38719:intron | 30.0% |
| ACTACCTGTTCAAGAGTTAT+TGG | - | chr3.3:84159935-84159954 | None:intergenic | 35.0% | |
| ACTTCAAATAAGGAATGCAC+TGG | + | chr3.3:84160600-84160619 | MS.gene38719:CDS | 35.0% | |
| ATCGAGTACGAAATACAGAT+TGG | - | chr3.3:84160029-84160048 | None:intergenic | 35.0% | |
| ATTATTTGCTTGGAAACTCC+AGG | - | chr3.3:84162023-84162042 | None:intergenic | 35.0% | |
| ATTGAATACGTGAAACGACA+TGG | + | chr3.3:84161547-84161566 | MS.gene38719:intron | 35.0% | |
| ATTGCAGTTAAAGAGACCAA+TGG | - | chr3.3:84161369-84161388 | None:intergenic | 35.0% | |
| ATTGGCTGCAGTTAATTACT+TGG | - | chr3.3:84161109-84161128 | None:intergenic | 35.0% | |
| CAGATGAGTGAAAAGAATTC+CGG | + | chr3.3:84162686-84162705 | MS.gene38719:intron | 35.0% | |
| CATCAGAACGAATTCATTGT+TGG | - | chr3.3:84159701-84159720 | None:intergenic | 35.0% | |
| GCTTATCTGAGCTTATTTAG+TGG | + | chr3.3:84160068-84160087 | MS.gene38719:intron | 35.0% | |
| GTAATACAAAAAACACTCGG+TGG | + | chr3.3:84161707-84161726 | MS.gene38719:intron | 35.0% | |
| TAATTATCTCCTGCTAATGC+TGG | + | chr3.3:84159970-84159989 | MS.gene38719:intron | 35.0% | |
| TACCAGATCCACTTCAAATA+AGG | + | chr3.3:84160590-84160609 | MS.gene38719:CDS | 35.0% | |
| TCACGGAAAAATGAATTTCG+AGG | + | chr3.3:84159893-84159912 | MS.gene38719:CDS | 35.0% | |
| TGGAGTTTCCAAGCAAATAA+TGG | + | chr3.3:84162022-84162041 | MS.gene38719:CDS | 35.0% | |
| TGTTCCAATAACTCTTGAAC+AGG | + | chr3.3:84159928-84159947 | MS.gene38719:CDS | 35.0% | |
| TTAGGGACAACTTGACTAAT+GGG | + | chr3.3:84161799-84161818 | MS.gene38719:intron | 35.0% | |
| TTCATTGTTGGAACTACTGA+CGG | - | chr3.3:84159689-84159708 | None:intergenic | 35.0% | |
| TTGAACATGTGAAGCTAAGA+CGG | - | chr3.3:84161733-84161752 | None:intergenic | 35.0% | |
| TTGCAGTTAAAGAGACCAAT+GGG | - | chr3.3:84161368-84161387 | None:intergenic | 35.0% | |
| TTGCCCTGTATATTTCTCTA+AGG | + | chr3.3:84161333-84161352 | MS.gene38719:CDS | 35.0% | |
| TTTAGGGACAACTTGACTAA+TGG | + | chr3.3:84161798-84161817 | MS.gene38719:intron | 35.0% | |
| TTTGAAAACTCTGACAAACC+AGG | - | chr3.3:84162441-84162460 | None:intergenic | 35.0% | |
| ! | AACTTTTCTGCCTGTGTTAT+AGG | + | chr3.3:84160528-84160547 | MS.gene38719:intron | 35.0% |
| ! | AAGTAAAGGTGTGACATTCA+TGG | - | chr3.3:84160428-84160447 | None:intergenic | 35.0% |
| ! | AGTGCATTCCTTATTTGAAG+TGG | - | chr3.3:84160601-84160620 | None:intergenic | 35.0% |
| ! | CAATTAGTCCTCTAAAGAAC+TGG | - | chr3.3:84160966-84160985 | None:intergenic | 35.0% |
| ! | CAGTTCTTTAGAGGACTAAT+TGG | + | chr3.3:84160964-84160983 | MS.gene38719:intron | 35.0% |
| ! | CTTTTGTGATCTTTCTTCCA+TGG | + | chr3.3:84162291-84162310 | MS.gene38719:intron | 35.0% |
| ! | GTATACTTGTTGAAGGTTGA+AGG | + | chr3.3:84160550-84160569 | MS.gene38719:CDS | 35.0% |
| ! | GTTCTTTAGAGGACTAATTG+GGG | + | chr3.3:84160966-84160985 | MS.gene38719:intron | 35.0% |
| ! | TAACTATGATGATGATGTGG+CGG | + | chr3.3:84161511-84161530 | MS.gene38719:intron | 35.0% |
| ! | TACTTTTAACAACGGGTAAG+GGG | + | chr3.3:84160443-84160462 | MS.gene38719:intron | 35.0% |
| ! | TTCCTTATTTGAAGTGGATC+TGG | - | chr3.3:84160595-84160614 | None:intergenic | 35.0% |
| ! | TTGCTTACAGTCAGAACTTT+TGG | + | chr3.3:84161285-84161304 | MS.gene38719:intron | 35.0% |
| !! | AATTAGTTCTGTGACTGAAC+AGG | + | chr3.3:84160801-84160820 | MS.gene38719:intron | 35.0% |
| !! | CATCCATACTTGCTATATTC+CGG | - | chr3.3:84161676-84161695 | None:intergenic | 35.0% |
| !! | GATTTGATTTTTATTCCCCC+TGG | + | chr3.3:84162716-84162735 | MS.gene38719:CDS | 35.0% |
| !!! | TATTTTAGTATCTGCCCATC+TGG | + | chr3.3:84161186-84161205 | MS.gene38719:intron | 35.0% |
| AAATTCCAAGACTGGCAAAC+AGG | + | chr3.3:84161147-84161166 | MS.gene38719:intron | 40.0% | |
| AACCGCGAAAATGATAGAAG+CGG | - | chr3.3:84159508-84159527 | None:intergenic | 40.0% | |
| AATTAACTGCAGCCAATGCA+TGG | + | chr3.3:84161112-84161131 | MS.gene38719:intron | 40.0% | |
| ATTGGATGACAACTTGACAG+AGG | - | chr3.3:84161488-84161507 | None:intergenic | 40.0% | |
| CAATTCTGGTCCCTCTATTA+TGG | + | chr3.3:84161385-84161404 | MS.gene38719:intron | 40.0% | |
| CTAAGGTTTGTCTAACCCAT+TGG | + | chr3.3:84161350-84161369 | MS.gene38719:intron | 40.0% | |
| CTACCGGAATATAGCAAGTA+TGG | + | chr3.3:84161670-84161689 | MS.gene38719:intron | 40.0% | |
| GAAGACACAAAAAAACTCGC+CGG | + | chr3.3:84159565-84159584 | MS.gene38719:CDS | 40.0% | |
| GAAGTGGATCTGGTAAGAAT+CGG | - | chr3.3:84160585-84160604 | None:intergenic | 40.0% | |
| GACGTTGTTGGAAGTTAAAG+CGG | - | chr3.3:84159635-84159654 | None:intergenic | 40.0% | |
| GACTAATTGGGGAATGTTGA+GGG | + | chr3.3:84160977-84160996 | MS.gene38719:intron | 40.0% | |
| GAGTGAAAAGAATTCCGGAT+GGG | + | chr3.3:84162691-84162710 | MS.gene38719:CDS | 40.0% | |
| GCGAGTGTGAGATTGAATTA+GGG | - | chr3.3:84159593-84159612 | None:intergenic | 40.0% | |
| GGTCTCTTTAACTGCAATTC+TGG | + | chr3.3:84161371-84161390 | MS.gene38719:intron | 40.0% | |
| GTGAGATTGAATTAGGGTTC+CGG | - | chr3.3:84159587-84159606 | None:intergenic | 40.0% | |
| GTGATAAAACCAGCATTAGC+AGG | - | chr3.3:84159982-84160001 | None:intergenic | 40.0% | |
| TAGTTAGGCATGTAGCTTGA+TGG | + | chr3.3:84161905-84161924 | MS.gene38719:intron | 40.0% | |
| TCAAATAAGGAATGCACTGG+AGG | + | chr3.3:84160603-84160622 | MS.gene38719:CDS | 40.0% | |
| TGAATTTCGAGGCAATGCTA+AGG | + | chr3.3:84159904-84159923 | MS.gene38719:CDS | 40.0% | |
| TGAGTGAAAAGAATTCCGGA+TGG | + | chr3.3:84162690-84162709 | MS.gene38719:CDS | 40.0% | |
| TGCGAGTGTGAGATTGAATT+AGG | - | chr3.3:84159594-84159613 | None:intergenic | 40.0% | |
| TGCTATATGTCAGTAGCACA+TGG | - | chr3.3:84160398-84160417 | None:intergenic | 40.0% | |
| TGGACAGGAAGATATTGAAC+AGG | + | chr3.3:84161965-84161984 | MS.gene38719:intron | 40.0% | |
| TGTCTTCAAAACGAGTTGCA+AGG | - | chr3.3:84159552-84159571 | None:intergenic | 40.0% | |
| TTCCATAGTGACACTGCTAT+AGG | - | chr3.3:84160700-84160719 | None:intergenic | 40.0% | |
| TTTAACCTGTTTGCCAGTCT+TGG | - | chr3.3:84161155-84161174 | None:intergenic | 40.0% | |
| ! | ACTTTTAACAACGGGTAAGG+GGG | + | chr3.3:84160444-84160463 | MS.gene38719:intron | 40.0% |
| ! | AGGAACTATCTAAGGTTTCC+AGG | + | chr3.3:84161985-84162004 | MS.gene38719:CDS | 40.0% |
| ! | ATCCGCTTCTATCATTTTCG+CGG | + | chr3.3:84159503-84159522 | MS.gene38719:CDS | 40.0% |
| ! | CGTTTGTTGGTTAAATGGAC+AGG | + | chr3.3:84161950-84161969 | MS.gene38719:intron | 40.0% |
| ! | CTTTTCACTCATCTGCAATG+TGG | - | chr3.3:84162681-84162700 | None:intergenic | 40.0% |
| ! | GGAACTATCTAAGGTTTCCA+GGG | + | chr3.3:84161986-84162005 | MS.gene38719:CDS | 40.0% |
| ! | TTACTGCCAATCTGCACTTT+TGG | - | chr3.3:84161851-84161870 | None:intergenic | 40.0% |
| ! | TTGTTAGTCTGCTTGATACC+TGG | + | chr3.3:84162420-84162439 | MS.gene38719:intron | 40.0% |
| !! | ATGGCTATAGAGTGCTGATA+TGG | + | chr3.3:84161566-84161585 | MS.gene38719:intron | 40.0% |
| !! | TGATGGAGTTCCTGTTTTTC+AGG | + | chr3.3:84160916-84160935 | MS.gene38719:CDS | 40.0% |
| !!! | CGTTGTTTTAGGTTCGATCA+CGG | + | chr3.3:84159876-84159895 | MS.gene38719:intron | 40.0% |
| ATCAAAACCTTCCTTGCTGG+CGG | - | chr3.3:84160900-84160919 | None:intergenic | 45.0% | |
| ATTCCGGTAGCCCATTAAGT+TGG | - | chr3.3:84161660-84161679 | None:intergenic | 45.0% | |
| CTTCAAAACGAGTTGCAAGG+TGG | - | chr3.3:84159549-84159568 | None:intergenic | 45.0% | |
| GCGAAAGCAAAGCAATCCAA+TGG | - | chr3.3:84159746-84159765 | None:intergenic | 45.0% | |
| GGAACTACTGACGGTGTAAA+CGG | - | chr3.3:84159680-84159699 | None:intergenic | 45.0% | |
| GGACTAATTGGGGAATGTTG+AGG | + | chr3.3:84160976-84160995 | MS.gene38719:intron | 45.0% | |
| GGTGTGACATTCATGGTTGT+AGG | - | chr3.3:84160421-84160440 | None:intergenic | 45.0% | |
| GTTGTTGGAAGTTAAAGCGG+CGG | - | chr3.3:84159632-84159651 | None:intergenic | 45.0% | |
| TCCATCAAAACCTTCCTTGC+TGG | - | chr3.3:84160903-84160922 | None:intergenic | 45.0% | |
| TGCAGATTGGCAGTAAGAGA+GGG | + | chr3.3:84161855-84161874 | MS.gene38719:intron | 45.0% | |
| ! | AATGCACTGGAGGTTAGTTC+CGG | + | chr3.3:84160613-84160632 | MS.gene38719:intron | 45.0% |
| ! | CAAGGTGGTTACAGTGTTGA+TGG | - | chr3.3:84159534-84159553 | None:intergenic | 45.0% |
| ! | GGATGACCAAAAGTGCAGAT+TGG | + | chr3.3:84161842-84161861 | MS.gene38719:intron | 45.0% |
| ! | GTCCTATAGCAGTGTCACTA+TGG | + | chr3.3:84160695-84160714 | MS.gene38719:intron | 45.0% |
| ! | TCCAGGACTTTTAGATACCC+TGG | - | chr3.3:84162006-84162025 | None:intergenic | 45.0% |
| ! | TCCAGGGTATCTAAAAGTCC+TGG | + | chr3.3:84162002-84162021 | MS.gene38719:CDS | 45.0% |
| !! | ACACCAACTTAATGGGCTAC+CGG | + | chr3.3:84161654-84161673 | MS.gene38719:intron | 45.0% |
| !! | GTTGAGAACGGCTTTTTCCA+GGG | - | chr3.3:84162736-84162755 | None:intergenic | 45.0% |
| !! | TGTTGAGAACGGCTTTTTCC+AGG | - | chr3.3:84162737-84162756 | None:intergenic | 45.0% |
| !! | TTGAGAACGGCTTTTTCCAG+GGG | - | chr3.3:84162735-84162754 | None:intergenic | 45.0% |
| ACTACTGACGGTGTAAACGG+AGG | - | chr3.3:84159677-84159696 | None:intergenic | 50.0% | |
| AGAGGAACGTTACCTGAGCA+AGG | - | chr3.3:84159789-84159808 | None:intergenic | 50.0% | |
| ATGCATGATAGTTGCGGCGT+GGG | + | chr3.3:84160778-84160797 | MS.gene38719:intron | 50.0% | |
| ATTGGGGAATGTTGAGGGTG+TGG | + | chr3.3:84160982-84161001 | MS.gene38719:intron | 50.0% | |
| GGAAAGCTTCAGCGTCTTCT+TGG | - | chr3.3:84159768-84159787 | None:intergenic | 50.0% | |
| GGACTTAGCACCTTCAGCAT+CGG | - | chr3.3:84159725-84159744 | None:intergenic | 50.0% | |
| GGCAGTCTCCAGTTCTTTAG+AGG | + | chr3.3:84160955-84160974 | MS.gene38719:intron | 50.0% | |
| GTGCAGATTGGCAGTAAGAG+AGG | + | chr3.3:84161854-84161873 | MS.gene38719:intron | 50.0% | |
| GTTCTGATGTCCGATGCTGA+AGG | + | chr3.3:84159712-84159731 | MS.gene38719:CDS | 50.0% | |
| TATGCATGATAGTTGCGGCG+TGG | + | chr3.3:84160777-84160796 | MS.gene38719:intron | 50.0% | |
| ! | TTGGGGAATGTTGAGGGTGT+GGG | + | chr3.3:84160983-84161002 | MS.gene38719:intron | 50.0% |
| !! | GCCAGCAAGGAAGGTTTTGA+TGG | + | chr3.3:84160899-84160918 | MS.gene38719:CDS | 50.0% |
| !! | GCTGAAGGTGCTAAGTCCAT+TGG | + | chr3.3:84159727-84159746 | MS.gene38719:CDS | 50.0% |
| !! | TGAGAACGGCTTTTTCCAGG+GGG | - | chr3.3:84162734-84162753 | None:intergenic | 50.0% |
| AGTTAAAGCGGCGGCGAAAG+CGG | - | chr3.3:84159623-84159642 | None:intergenic | 55.0% | |
| CGCTGAAGCTTTCCTTGCTC+AGG | + | chr3.3:84159774-84159793 | MS.gene38719:CDS | 55.0% | |
| GACGGTGTAAACGGAGGTTC+CGG | - | chr3.3:84159671-84159690 | None:intergenic | 55.0% | |
| GAGGGATTTGGCGACGTTGT+TGG | - | chr3.3:84159647-84159666 | None:intergenic | 55.0% | |
| AACGTCGCCAAATCCCTCGC+CGG | + | chr3.3:84159649-84159668 | MS.gene38719:CDS | 60.0% | |
| GTAAACGGAGGTTCCGGCGA+GGG | - | chr3.3:84159665-84159684 | None:intergenic | 60.0% | |
| GTTAAAGCGGCGGCGAAAGC+GGG | - | chr3.3:84159622-84159641 | None:intergenic | 60.0% | |
| TGTAAACGGAGGTTCCGGCG+AGG | - | chr3.3:84159666-84159685 | None:intergenic | 60.0% | |
| TTAAAGCGGCGGCGAAAGCG+GGG | - | chr3.3:84159621-84159640 | None:intergenic | 60.0% | |
| ! | GGAATGTTGAGGGTGTGGGC+AGG | + | chr3.3:84160987-84161006 | MS.gene38719:intron | 60.0% |
| CTCAGAGCCGCCAGCAAGGA+AGG | + | chr3.3:84160890-84160909 | MS.gene38719:CDS | 65.0% | |
| GGAGGTTCCGGCGAGGGATT+TGG | - | chr3.3:84159659-84159678 | None:intergenic | 65.0% | |
| TCAGCTCAGAGCCGCCAGCA+AGG | + | chr3.3:84160886-84160905 | MS.gene38719:intron | 65.0% | |
| AGCGGCGGCGAAAGCGGGGT+TGG | - | chr3.3:84159617-84159636 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84159481 | 84162778 | 84159481 | ID=MS.gene38719 |
| chr3.3 | mRNA | 84159481 | 84162778 | 84159481 | ID=MS.gene38719.t1;Parent=MS.gene38719 |
| chr3.3 | exon | 84159481 | 84159795 | 84159481 | ID=MS.gene38719.t1.exon1;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84159481 | 84159795 | 84159481 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84159887 | 84159949 | 84159887 | ID=MS.gene38719.t1.exon2;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84159887 | 84159949 | 84159887 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84160550 | 84160624 | 84160550 | ID=MS.gene38719.t1.exon3;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84160550 | 84160624 | 84160550 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84160890 | 84160937 | 84160890 | ID=MS.gene38719.t1.exon4;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84160890 | 84160937 | 84160890 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84161295 | 84161354 | 84161295 | ID=MS.gene38719.t1.exon5;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84161295 | 84161354 | 84161295 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84161972 | 84162043 | 84161972 | ID=MS.gene38719.t1.exon6;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84161972 | 84162043 | 84161972 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84162561 | 84162596 | 84162561 | ID=MS.gene38719.t1.exon7;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84162561 | 84162596 | 84162561 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| chr3.3 | exon | 84162689 | 84162778 | 84162689 | ID=MS.gene38719.t1.exon8;Parent=MS.gene38719.t1 |
| chr3.3 | CDS | 84162689 | 84162778 | 84162689 | ID=cds.MS.gene38719.t1;Parent=MS.gene38719.t1 |
| Gene Sequence |
| Protein sequence |
