Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39139.t1 | XP_003625031.1 | 98.8 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 1.30E-86 | 328.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39139.t1 | Q9M1J1 | 65.1 | 169 | 56 | 1 | 1 | 166 | 1 | 169 | 2.9e-58 | 226.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39139.t1 | A2Q2Z4 | 98.8 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 9.6e-87 | 328.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene39139 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene051756 | MS.gene39139 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene39139 | 0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene39139 | -0.80708 | 6.02E-50 | -1.69E-46 |
| MS.gene054536 | MS.gene39139 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene39139 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene39139 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene39139 | 0.814733 | 1.33E-51 | -1.69E-46 |
| MS.gene057452 | MS.gene39139 | -0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene39139 | 0.832781 | 7.77E-56 | -1.69E-46 |
| MS.gene058054 | MS.gene39139 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene058074 | MS.gene39139 | 0.827995 | 1.15E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene39139 | 0.812202 | 4.77E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene39139 | -0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene39139 | 0.805278 | 1.44E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene39139 | 0.805382 | 1.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39139.t1 | MTR_7g090210 | 98.802 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 8.77e-122 | 340 |
| MS.gene39139.t1 | MTR_7g090210 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 1.55e-85 | 247 |
| MS.gene39139.t1 | MTR_5g090010 | 63.095 | 168 | 61 | 1 | 1 | 167 | 4 | 171 | 2.13e-75 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39139.t1 | AT3G57090 | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.39e-80 | 234 |
| MS.gene39139.t1 | AT3G57090 | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.39e-80 | 234 |
| MS.gene39139.t1 | AT5G12390 | 55.357 | 168 | 67 | 2 | 1 | 163 | 1 | 165 | 1.55e-63 | 193 |
Find 47 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAGGAGTCGGCAGCTTC+TGG | 0.252357 | 7.4:-18654785 | MS.gene39139:CDS |
| ATGTATAGATTCAATTCTTT+CGG | 0.289178 | 7.4:+18653434 | None:intergenic |
| TGTATAGATTCAATTCTTTC+GGG | 0.299564 | 7.4:+18653435 | None:intergenic |
| ATTATGATTCGCAGCTTCTT+TGG | 0.302296 | 7.4:-18654884 | MS.gene39139:intron |
| TTCTTGCTGTTGGGTACTAC+AGG | 0.348000 | 7.4:-18654819 | MS.gene39139:CDS |
| GGCATCACTGCAACAGCTGC+AGG | 0.350680 | 7.4:-18653490 | MS.gene39139:CDS |
| AGCTTTATCTTCTTGCTGTT+GGG | 0.356980 | 7.4:-18654828 | MS.gene39139:CDS |
| GCAGCTTCTGGAGCAATGTT+TGG | 0.361994 | 7.4:-18654773 | MS.gene39139:CDS |
| TTATGATTCGCAGCTTCTTT+GGG | 0.372741 | 7.4:-18654883 | MS.gene39139:intron |
| CCTTGCAGATTGCACCTGAT+TGG | 0.393005 | 7.4:-18653645 | MS.gene39139:intron |
| CATGGGCACTTGTTCATTCA+AGG | 0.399932 | 7.4:-18655768 | MS.gene39139:CDS |
| GCAGATGGTGTAATAGGAAT+TGG | 0.406309 | 7.4:-18653511 | MS.gene39139:intron |
| AAGCTTTATCTTCTTGCTGT+TGG | 0.416064 | 7.4:-18654829 | MS.gene39139:CDS |
| AGCTTCTCTCTTTGATGTAA+AGG | 0.431754 | 7.4:+18654847 | None:intergenic |
| GCTCATGCAGATGGTGTAAT+AGG | 0.436512 | 7.4:-18653517 | MS.gene39139:intron |
| TCGTCAATGGAGGCTAAAAT+CGG | 0.438554 | 7.4:-18656293 | None:intergenic |
| GACAATGCCTGCCTCCAATC+AGG | 0.442415 | 7.4:+18653631 | None:intergenic |
| GCTTCTGGAGCAATGTTTGG+AGG | 0.445797 | 7.4:-18654770 | MS.gene39139:intron |
| TCCCTCGGAAACTTCTTTAC+CGG | 0.457316 | 7.4:-18656257 | MS.gene39139:CDS |
| GAAGTTGCAGAGGCTTCTAA+TGG | 0.471526 | 7.4:-18655832 | MS.gene39139:CDS |
| GGAAGCTTCTTTGAATCCCT+CGG | 0.481996 | 7.4:-18656272 | MS.gene39139:CDS |
| TGCAGATTGCACCTGATTGG+AGG | 0.488276 | 7.4:-18653642 | MS.gene39139:intron |
| TGGTGTCATTGCTGCAGCAT+TGG | 0.513273 | 7.4:-18653458 | MS.gene39139:CDS |
| TCCAGAAGCTGCCGACTCCT+AGG | 0.515588 | 7.4:+18654784 | None:intergenic |
| AGTAATTATACTTTCGAGCA+TGG | 0.516555 | 7.4:+18655717 | None:intergenic |
| CCGGCGGCGATCAGATCCCT+TGG | 0.523323 | 7.4:-18656238 | MS.gene39139:CDS |
| AGAGCATAATGAGGTTGTCA+TGG | 0.535428 | 7.4:-18655786 | MS.gene39139:CDS |
| ACAGGGCTACTGATTATCCT+AGG | 0.548719 | 7.4:-18654801 | MS.gene39139:CDS |
| GTCGAAGAACGAATTGCAAA+GGG | 0.553821 | 7.4:-18653595 | MS.gene39139:intron |
| GATTGCACCTGATTGGAGGC+AGG | 0.564228 | 7.4:-18653638 | MS.gene39139:CDS |
| CCAAGGGATCTGATCGCCGC+CGG | 0.574729 | 7.4:+18656238 | None:intergenic |
| TCTTGCTGTTGGGTACTACA+GGG | 0.577328 | 7.4:-18654818 | MS.gene39139:CDS |
| GAGCATAATGAGGTTGTCAT+GGG | 0.590973 | 7.4:-18655785 | MS.gene39139:CDS |
| AGTCGAAGAACGAATTGCAA+AGG | 0.598958 | 7.4:-18653596 | MS.gene39139:CDS |
| CTGTGAAAGAGAAGTTGCAG+AGG | 0.603501 | 7.4:-18655842 | MS.gene39139:CDS |
| GCATCACTGCAACAGCTGCA+GGG | 0.604640 | 7.4:-18653489 | MS.gene39139:CDS |
| TGACATCACGGTCGCACCAA+GGG | 0.605500 | 7.4:+18656222 | None:intergenic |
| CTACTGATTATCCTAGGAGT+CGG | 0.615715 | 7.4:-18654795 | MS.gene39139:CDS |
| CGCCGGTAAAGAAGTTTCCG+AGG | 0.620017 | 7.4:+18656255 | None:intergenic |
| GCCGGTAAAGAAGTTTCCGA+GGG | 0.620980 | 7.4:+18656256 | None:intergenic |
| CTCGGAAACTTCTTTACCGG+CGG | 0.628306 | 7.4:-18656254 | MS.gene39139:CDS |
| ATGACATCACGGTCGCACCA+AGG | 0.644581 | 7.4:+18656221 | None:intergenic |
| GTAAGAATGAGAGCATAATG+AGG | 0.656100 | 7.4:-18655795 | MS.gene39139:CDS |
| TTTCGAGCATGGCAATCCCA+CGG | 0.664812 | 7.4:+18655728 | None:intergenic |
| AACAAGAAGATATTCACCGT+GGG | 0.666532 | 7.4:-18655744 | MS.gene39139:CDS |
| AAGTTACAGAGATGACATCA+CGG | 0.723970 | 7.4:+18656210 | None:intergenic |
| CAACAAGAAGATATTCACCG+TGG | 0.736975 | 7.4:-18655745 | MS.gene39139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATATAAGAAAAAATATT+GGG | + | chr7.4:18654042-18654061 | None:intergenic | 10.0% |
| !! | CAGAATATAAGAAAAAATAT+TGG | + | chr7.4:18654043-18654062 | None:intergenic | 15.0% |
| !! | AAACAGTAATAAGAAAAAAC+CGG | + | chr7.4:18655817-18655836 | None:intergenic | 20.0% |
| !! | AATCATATTCATATGTTCAT+TGG | - | chr7.4:18654141-18654160 | MS.gene39139:intron | 20.0% |
| !! | ATAATAATTATGGATGTACA+AGG | + | chr7.4:18654832-18654851 | None:intergenic | 20.0% |
| !! | ATGCAATACAACTAAAATAA+TGG | - | chr7.4:18654409-18654428 | MS.gene39139:intron | 20.0% |
| !! | TCAAAAAAGCTATTAATTTC+CGG | + | chr7.4:18653626-18653645 | None:intergenic | 20.0% |
| !! | TGGATCAAAATAAAATCAAT+GGG | + | chr7.4:18655874-18655893 | None:intergenic | 20.0% |
| !! | TTCTGATTATTATTCTGTAT+AGG | - | chr7.4:18654058-18654077 | MS.gene39139:intron | 20.0% |
| !!! | ATTTTGATTTGTTTGAGTTT+AGG | - | chr7.4:18653746-18653765 | MS.gene39139:intron | 20.0% |
| !!! | TCTTTTATCTCTAAATTTTG+AGG | - | chr7.4:18656055-18656074 | MS.gene39139:intron | 20.0% |
| !!! | TTTGTTTTGATTTTCTCTTT+GGG | - | chr7.4:18655103-18655122 | MS.gene39139:intron | 20.0% |
| !!! | TTTTGATTTGTTTGAGTTTA+GGG | - | chr7.4:18653747-18653766 | MS.gene39139:intron | 20.0% |
| ! | AACATCAATCATATCTCTTT+AGG | + | chr7.4:18654778-18654797 | None:intergenic | 25.0% |
| ! | AAGAAATAACATGAATTGAG+AGG | + | chr7.4:18653565-18653584 | None:intergenic | 25.0% |
| ! | ACATCAATCATATCTCTTTA+GGG | + | chr7.4:18654777-18654796 | None:intergenic | 25.0% |
| ! | ACTCAAACAAATCAAAATTG+AGG | + | chr7.4:18653744-18653763 | None:intergenic | 25.0% |
| ! | AGAAATAACATGAATTGAGA+GGG | + | chr7.4:18653564-18653583 | None:intergenic | 25.0% |
| ! | ATAACAAATTCCTTCAGAAA+CGG | - | chr7.4:18655510-18655529 | MS.gene39139:intron | 25.0% |
| ! | ATCGCATTAACATTAACTAA+TGG | - | chr7.4:18656184-18656203 | MS.gene39139:intron | 25.0% |
| ! | ATTATTCTGTATAGGTTCAT+TGG | - | chr7.4:18654066-18654085 | MS.gene39139:intron | 25.0% |
| ! | CAAATTAATGTAACTTCTCT+TGG | - | chr7.4:18654296-18654315 | MS.gene39139:intron | 25.0% |
| ! | CTCAAACAAATCAAAATTGA+GGG | + | chr7.4:18653743-18653762 | None:intergenic | 25.0% |
| ! | GAACTAATTGTTGAAAAAAC+AGG | + | chr7.4:18655192-18655211 | None:intergenic | 25.0% |
| ! | GTGGATCAAAATAAAATCAA+TGG | + | chr7.4:18655875-18655894 | None:intergenic | 25.0% |
| ! | TAACAATATGAACATACACT+GGG | + | chr7.4:18655074-18655093 | None:intergenic | 25.0% |
| ! | TATAGAACACAATGATTCTT+CGG | - | chr7.4:18655699-18655718 | MS.gene39139:intron | 25.0% |
| ! | TATCACACAAACTTTAATGT+AGG | - | chr7.4:18654486-18654505 | MS.gene39139:intron | 25.0% |
| ! | TATTCACAAATATCAGCATA+AGG | + | chr7.4:18655907-18655926 | None:intergenic | 25.0% |
| !! | ACCAGATTGAAAATTTTATC+TGG | - | chr7.4:18653781-18653800 | MS.gene39139:intron | 25.0% |
| !! | ATTTTCAATCTGGTTATGAA+AGG | + | chr7.4:18653775-18653794 | None:intergenic | 25.0% |
| !! | CCAGATTGAAAATTTTATCT+GGG | - | chr7.4:18653782-18653801 | MS.gene39139:intron | 25.0% |
| !! | TATATTTTTCTTGCCTTTTC+TGG | - | chr7.4:18655023-18655042 | MS.gene39139:intron | 25.0% |
| !!! | CTTTGTTTTGATTTTCTCTT+TGG | - | chr7.4:18655102-18655121 | MS.gene39139:intron | 25.0% |
| !!! | TTTCATTGCATTGTTTTGAA+GGG | - | chr7.4:18653866-18653885 | MS.gene39139:intron | 25.0% |
| !!! | TTTTCATTGCATTGTTTTGA+AGG | - | chr7.4:18653865-18653884 | MS.gene39139:intron | 25.0% |
| AAAAAAACACATAGCACGAA+AGG | + | chr7.4:18654748-18654767 | None:intergenic | 30.0% | |
| ACAAACTTTAATGTAGGAGT+AGG | - | chr7.4:18654492-18654511 | MS.gene39139:intron | 30.0% | |
| ACTGCTAATAACAAAGGAAA+GGG | + | chr7.4:18655367-18655386 | None:intergenic | 30.0% | |
| AGTAATTATACTTTCGAGCA+TGG | + | chr7.4:18654017-18654036 | None:intergenic | 30.0% | |
| ATTACTGTTTGTATGTGAGT+GGG | - | chr7.4:18655827-18655846 | MS.gene39139:CDS | 30.0% | |
| ATTGTGTTCTATAGGAAATG+TGG | + | chr7.4:18655692-18655711 | None:intergenic | 30.0% | |
| GAAGAATCATTGTGTTCTAT+AGG | + | chr7.4:18655700-18655719 | None:intergenic | 30.0% | |
| GCTGCGAATCATAATAATTA+TGG | + | chr7.4:18654842-18654861 | None:intergenic | 30.0% | |
| GGAAAGAGATCTCAAATTAT+AGG | + | chr7.4:18655315-18655334 | None:intergenic | 30.0% | |
| GTAACAATATGAACATACAC+TGG | + | chr7.4:18655075-18655094 | None:intergenic | 30.0% | |
| TATTACTGTTTGTATGTGAG+TGG | - | chr7.4:18655826-18655845 | MS.gene39139:CDS | 30.0% | |
| TATTATGCCCTTTATATGCA+TGG | - | chr7.4:18654802-18654821 | MS.gene39139:CDS | 30.0% | |
| TATTCAAGATGCTATCAGTT+AGG | - | chr7.4:18655339-18655358 | MS.gene39139:intron | 30.0% | |
| TGAATTGCAAATACACTGTT+TGG | - | chr7.4:18653829-18653848 | MS.gene39139:intron | 30.0% | |
| TGATAGCATCTTGAATAACA+AGG | + | chr7.4:18655336-18655355 | None:intergenic | 30.0% | |
| TTACTAAATTAGCGTGTGAA+GGG | - | chr7.4:18654524-18654543 | MS.gene39139:intron | 30.0% | |
| TTTACTAAATTAGCGTGTGA+AGG | - | chr7.4:18654523-18654542 | MS.gene39139:intron | 30.0% | |
| TTTGTGACTGCTAATAACAA+AGG | + | chr7.4:18655373-18655392 | None:intergenic | 30.0% | |
| ! | CCCAGATAAAATTTTCAATC+TGG | + | chr7.4:18653785-18653804 | None:intergenic | 30.0% |
| ! | TACATTAATTTGAGCACAAC+AGG | + | chr7.4:18654288-18654307 | None:intergenic | 30.0% |
| ! | TTCTTCGACTGTTTTCTTAA+GGG | + | chr7.4:18656125-18656144 | None:intergenic | 30.0% |
| ! | TTGTTATTAGCAGTCACAAA+AGG | - | chr7.4:18655373-18655392 | MS.gene39139:intron | 30.0% |
| !! | AACGGTTTTATATCGTTGAT+TGG | - | chr7.4:18655528-18655547 | MS.gene39139:intron | 30.0% |
| !! | AAGGAATTTGTTATCCACAA+AGG | + | chr7.4:18655504-18655523 | None:intergenic | 30.0% |
| !! | ATTTTATCTGGGATTATTGC+TGG | - | chr7.4:18653793-18653812 | MS.gene39139:intron | 30.0% |
| !! | GTTTTATATCGTTGATTGGT+CGG | - | chr7.4:18655532-18655551 | MS.gene39139:intron | 30.0% |
| !! | TTTTAGAAGTAGATCTGTCA+AGG | - | chr7.4:18655652-18655671 | MS.gene39139:intron | 30.0% |
| AACAAGAAGATATTCACCGT+GGG | - | chr7.4:18653987-18654006 | MS.gene39139:intron | 35.0% | |
| AAGTTACAGAGATGACATCA+CGG | + | chr7.4:18653524-18653543 | None:intergenic | 35.0% | |
| ACAACTAGCAATGAAGACAT+TGG | + | chr7.4:18654334-18654353 | None:intergenic | 35.0% | |
| ACTCAGAATTTCAATTGTGC+CGG | - | chr7.4:18653604-18653623 | MS.gene39139:CDS | 35.0% | |
| ACTTTAATGTAGGAGTAGGA+CGG | - | chr7.4:18654496-18654515 | MS.gene39139:intron | 35.0% | |
| AGCTTCTCTCTTTGATGTAA+AGG | + | chr7.4:18654887-18654906 | None:intergenic | 35.0% | |
| AGCTTGAGAGGAAAATCTAA+CGG | - | chr7.4:18654565-18654584 | MS.gene39139:intron | 35.0% | |
| AGTCCTTTGTCTAACATGAA+CGG | - | chr7.4:18656017-18656036 | MS.gene39139:intron | 35.0% | |
| ATCACAAGACGTAGAATAGA+CGG | + | chr7.4:18654172-18654191 | None:intergenic | 35.0% | |
| ATTATGATTCGCAGCTTCTT+TGG | - | chr7.4:18654847-18654866 | MS.gene39139:CDS | 35.0% | |
| CCATGCCTGTTATTACATAT+GGG | - | chr7.4:18655725-18655744 | MS.gene39139:intron | 35.0% | |
| CGATATAAAACCGTTTCTGA+AGG | + | chr7.4:18655523-18655542 | None:intergenic | 35.0% | |
| CTTCTTAGTGAGAGGTTTAT+TGG | - | chr7.4:18655473-18655492 | MS.gene39139:intron | 35.0% | |
| GACTGCTAATAACAAAGGAA+AGG | + | chr7.4:18655368-18655387 | None:intergenic | 35.0% | |
| GATACATTGTCTATGTGATG+TGG | - | chr7.4:18655230-18655249 | MS.gene39139:intron | 35.0% | |
| GCAGTTCGAATTATTCATTC+AGG | + | chr7.4:18654373-18654392 | None:intergenic | 35.0% | |
| GCTTTCCCATATGTAATAAC+AGG | + | chr7.4:18655733-18655752 | None:intergenic | 35.0% | |
| GTTTATTGGACAATCCTTTG+TGG | - | chr7.4:18655487-18655506 | MS.gene39139:intron | 35.0% | |
| TATAGGAAATGTGGAGAATC+AGG | + | chr7.4:18655683-18655702 | None:intergenic | 35.0% | |
| TCAACGCTATATTGCATACT+CGG | - | chr7.4:18654203-18654222 | MS.gene39139:intron | 35.0% | |
| TCAAGCTGGTCCAATTATAA+TGG | + | chr7.4:18654552-18654571 | None:intergenic | 35.0% | |
| TCCATGCCTGTTATTACATA+TGG | - | chr7.4:18655724-18655743 | MS.gene39139:intron | 35.0% | |
| TGGATATTGGATACTTCACA+AGG | + | chr7.4:18655137-18655156 | None:intergenic | 35.0% | |
| TTATGATTCGCAGCTTCTTT+GGG | - | chr7.4:18654848-18654867 | MS.gene39139:CDS | 35.0% | |
| TTCGAATTATTCATTCAGGC+TGG | + | chr7.4:18654369-18654388 | None:intergenic | 35.0% | |
| TTCTACGTCTTGTGATTTCT+TGG | - | chr7.4:18654176-18654195 | MS.gene39139:intron | 35.0% | |
| TTTAATAAACCCAGCTGGAT+TGG | - | chr7.4:18655399-18655418 | MS.gene39139:intron | 35.0% | |
| ! | AAAAAACCGGCTCTCTAATA+TGG | + | chr7.4:18655804-18655823 | None:intergenic | 35.0% |
| ! | AAAATTGAGGGCGCAAAATA+TGG | + | chr7.4:18653731-18653750 | None:intergenic | 35.0% |
| ! | AAGCTTTATCTTCTTGCTGT+TGG | - | chr7.4:18654902-18654921 | MS.gene39139:intron | 35.0% |
| ! | GTAAGAATGAGAGCATAATG+AGG | - | chr7.4:18653936-18653955 | MS.gene39139:intron | 35.0% |
| ! | GTTCTTCGACTGTTTTCTTA+AGG | + | chr7.4:18656126-18656145 | None:intergenic | 35.0% |
| !! | AGCTTTATCTTCTTGCTGTT+GGG | - | chr7.4:18654903-18654922 | MS.gene39139:intron | 35.0% |
| AAAACACATAGCACGAAAGG+AGG | + | chr7.4:18654745-18654764 | None:intergenic | 40.0% | |
| AAACACATAGCACGAAAGGA+GGG | + | chr7.4:18654744-18654763 | None:intergenic | 40.0% | |
| AAGGTCAGCCATGCATATAA+AGG | + | chr7.4:18654813-18654832 | None:intergenic | 40.0% | |
| ACGTGATTGTTTACGAAAGC+AGG | - | chr7.4:18655561-18655580 | MS.gene39139:intron | 40.0% | |
| AGAGCATAATGAGGTTGTCA+TGG | - | chr7.4:18653945-18653964 | MS.gene39139:intron | 40.0% | |
| AGAGTCAACACAGTGGATAT+TGG | + | chr7.4:18655150-18655169 | None:intergenic | 40.0% | |
| AGGTCAGCCATGCATATAAA+GGG | + | chr7.4:18654812-18654831 | None:intergenic | 40.0% | |
| AGTCGAAGAACGAATTGCAA+AGG | - | chr7.4:18656135-18656154 | MS.gene39139:intron | 40.0% | |
| ATGGGAAAGCTGATAACACT+AGG | - | chr7.4:18655743-18655762 | MS.gene39139:CDS | 40.0% | |
| CAACAAGAAGATATTCACCG+TGG | - | chr7.4:18653986-18654005 | MS.gene39139:intron | 40.0% | |
| CAGACATACTTCTTAGTGAG+AGG | - | chr7.4:18655465-18655484 | MS.gene39139:intron | 40.0% | |
| CAGCATAAGGTCATTAGTAG+TGG | + | chr7.4:18655894-18655913 | None:intergenic | 40.0% | |
| CCCATATGTAATAACAGGCA+TGG | + | chr7.4:18655728-18655747 | None:intergenic | 40.0% | |
| GAACCGTTCATGTTAGACAA+AGG | + | chr7.4:18656023-18656042 | None:intergenic | 40.0% | |
| GAGCATAATGAGGTTGTCAT+GGG | - | chr7.4:18653946-18653965 | MS.gene39139:intron | 40.0% | |
| GCAGATGGTGTAATAGGAAT+TGG | - | chr7.4:18656220-18656239 | MS.gene39139:CDS | 40.0% | |
| GTCGAAGAACGAATTGCAAA+GGG | - | chr7.4:18656136-18656155 | MS.gene39139:intron | 40.0% | |
| GTTGGAGGAAGTTTAGATCA+TGG | + | chr7.4:18654601-18654620 | None:intergenic | 40.0% | |
| TAGCAGCTATATGTGACAGA+AGG | + | chr7.4:18654250-18654269 | None:intergenic | 40.0% | |
| TATAATTGGACCAGCTTGAG+AGG | - | chr7.4:18654553-18654572 | MS.gene39139:intron | 40.0% | |
| TCACAAGACGTAGAATAGAC+GGG | + | chr7.4:18654171-18654190 | None:intergenic | 40.0% | |
| TGATGATCTGACACCAGAAA+AGG | + | chr7.4:18655039-18655058 | None:intergenic | 40.0% | |
| TGATTGTTTACGAAAGCAGG+AGG | - | chr7.4:18655564-18655583 | MS.gene39139:intron | 40.0% | |
| TGGCTTAGTAGAAACATGCT+AGG | - | chr7.4:18655419-18655438 | MS.gene39139:intron | 40.0% | |
| TGTTCACCATATTAGAGAGC+CGG | - | chr7.4:18655795-18655814 | MS.gene39139:CDS | 40.0% | |
| ! | ATATCGTTGATTGGTCGGTA+TGG | - | chr7.4:18655537-18655556 | MS.gene39139:intron | 40.0% |
| ! | ATCTGGGATTATTGCTGGAA+TGG | - | chr7.4:18653798-18653817 | MS.gene39139:intron | 40.0% |
| ! | CTACTGATTATCCTAGGAGT+CGG | - | chr7.4:18654936-18654955 | MS.gene39139:intron | 40.0% |
| ! | GGACTTTTAATAAACCCAGC+TGG | - | chr7.4:18655394-18655413 | MS.gene39139:intron | 40.0% |
| ! | GTGATGTGGATGCTTTTGTT+GGG | - | chr7.4:18655244-18655263 | MS.gene39139:intron | 40.0% |
| ! | GTTAGATTTTCCTCTCAAGC+TGG | + | chr7.4:18654566-18654585 | None:intergenic | 40.0% |
| ! | TGTGATGTGGATGCTTTTGT+TGG | - | chr7.4:18655243-18655262 | MS.gene39139:intron | 40.0% |
| !! | GTGAAGGGCACCATTATAAT+TGG | - | chr7.4:18654539-18654558 | MS.gene39139:intron | 40.0% |
| AGAAGTCTGCTTTGCATCGT+TGG | + | chr7.4:18654619-18654638 | None:intergenic | 45.0% | |
| CATGGGCACTTGTTCATTCA+AGG | - | chr7.4:18653963-18653982 | MS.gene39139:intron | 45.0% | |
| CTGTGAAAGAGAAGTTGCAG+AGG | - | chr7.4:18653889-18653908 | MS.gene39139:intron | 45.0% | |
| GAAGTTGCAGAGGCTTCTAA+TGG | - | chr7.4:18653899-18653918 | MS.gene39139:intron | 45.0% | |
| GCTCATGCAGATGGTGTAAT+AGG | - | chr7.4:18656214-18656233 | MS.gene39139:intron | 45.0% | |
| GGAAGCTTCTTTGAATCCCT+CGG | - | chr7.4:18653459-18653478 | MS.gene39139:CDS | 45.0% | |
| TAGACAACTTCCTCGCCTTA+GGG | - | chr7.4:18654708-18654727 | MS.gene39139:intron | 45.0% | |
| TCCCTCGGAAACTTCTTTAC+CGG | - | chr7.4:18653474-18653493 | MS.gene39139:CDS | 45.0% | |
| TCTACTAAGCCAATCCAGCT+GGG | + | chr7.4:18655411-18655430 | None:intergenic | 45.0% | |
| TTAATGTAGGAGTAGGACGG+TGG | - | chr7.4:18654499-18654518 | MS.gene39139:intron | 45.0% | |
| TTAGACAACTTCCTCGCCTT+AGG | - | chr7.4:18654707-18654726 | MS.gene39139:intron | 45.0% | |
| TTCTACTAAGCCAATCCAGC+TGG | + | chr7.4:18655412-18655431 | None:intergenic | 45.0% | |
| ! | ACAGGGCTACTGATTATCCT+AGG | - | chr7.4:18654930-18654949 | MS.gene39139:intron | 45.0% |
| ! | AGATCAGCCTGAGATGCTTT+TGG | - | chr7.4:18654677-18654696 | MS.gene39139:intron | 45.0% |
| !! | ATTCACGCCAAAAGCATCTC+AGG | + | chr7.4:18654687-18654706 | None:intergenic | 45.0% |
| !! | TCTTGCTGTTGGGTACTACA+GGG | - | chr7.4:18654913-18654932 | MS.gene39139:intron | 45.0% |
| !! | TTCTTGCTGTTGGGTACTAC+AGG | - | chr7.4:18654912-18654931 | MS.gene39139:intron | 45.0% |
| AACATGCTAGGTCTGCGAGT+AGG | - | chr7.4:18655431-18655450 | MS.gene39139:intron | 50.0% | |
| AGTCTGCTTTGCATCGTTGG+AGG | + | chr7.4:18654616-18654635 | None:intergenic | 50.0% | |
| CAGGTGCAATCTGCAAGGAT+AGG | + | chr7.4:18656084-18656103 | None:intergenic | 50.0% | |
| CCAATCAGGTGCAATCTGCA+AGG | + | chr7.4:18656089-18656108 | None:intergenic | 50.0% | |
| CCTTGCAGATTGCACCTGAT+TGG | - | chr7.4:18656086-18656105 | MS.gene39139:intron | 50.0% | |
| CGAAAGCAGGAGGATACATG+TGG | - | chr7.4:18655574-18655593 | MS.gene39139:intron | 50.0% | |
| CTCGGAAACTTCTTTACCGG+CGG | - | chr7.4:18653477-18653496 | MS.gene39139:CDS | 50.0% | |
| GCCGGTAAAGAAGTTTCCGA+GGG | + | chr7.4:18653478-18653497 | None:intergenic | 50.0% | |
| TGCAGATTGCACCTGATTGG+AGG | - | chr7.4:18656089-18656108 | MS.gene39139:intron | 50.0% | |
| TTTCGAGCATGGCAATCCCA+CGG | + | chr7.4:18654006-18654025 | None:intergenic | 50.0% | |
| ! | ACAGCTGCAGGGCTTTTAGT+TGG | - | chr7.4:18656253-18656272 | MS.gene39139:CDS | 50.0% |
| ! | CCAGTCTAGAGTCAACACAG+TGG | + | chr7.4:18655157-18655176 | None:intergenic | 50.0% |
| ! | GGATGCTTTTGTTGGGCGTT+GGG | - | chr7.4:18655251-18655270 | MS.gene39139:intron | 50.0% |
| ! | TGGATGCTTTTGTTGGGCGT+TGG | - | chr7.4:18655250-18655269 | MS.gene39139:intron | 50.0% |
| !! | CCACTGTGTTGACTCTAGAC+TGG | - | chr7.4:18655154-18655173 | MS.gene39139:intron | 50.0% |
| !! | GCAGCTTCTGGAGCAATGTT+TGG | - | chr7.4:18654958-18654977 | MS.gene39139:intron | 50.0% |
| !! | GCTTCTGGAGCAATGTTTGG+AGG | - | chr7.4:18654961-18654980 | MS.gene39139:intron | 50.0% |
| !! | TGGTGTCATTGCTGCAGCAT+TGG | - | chr7.4:18656273-18656292 | MS.gene39139:CDS | 50.0% |
| ATGACATCACGGTCGCACCA+AGG | + | chr7.4:18653513-18653532 | None:intergenic | 55.0% | |
| CAATGACCCCAGAGCCACTT+CGG | + | chr7.4:18654450-18654469 | None:intergenic | 55.0% | |
| CCTTCAAAACGCCACCGAAG+TGG | - | chr7.4:18654433-18654452 | MS.gene39139:intron | 55.0% | |
| CGCCGGTAAAGAAGTTTCCG+AGG | + | chr7.4:18653479-18653498 | None:intergenic | 55.0% | |
| GACAATGCCTGCCTCCAATC+AGG | + | chr7.4:18656103-18656122 | None:intergenic | 55.0% | |
| GATTGCACCTGATTGGAGGC+AGG | - | chr7.4:18656093-18656112 | MS.gene39139:intron | 55.0% | |
| GCATCACTGCAACAGCTGCA+GGG | - | chr7.4:18656242-18656261 | MS.gene39139:CDS | 55.0% | |
| GGCTTGTGTGCTCATGCAGA+TGG | - | chr7.4:18656205-18656224 | MS.gene39139:intron | 55.0% | |
| TGACATCACGGTCGCACCAA+GGG | + | chr7.4:18653512-18653531 | None:intergenic | 55.0% | |
| ! | CCACTTCGGTGGCGTTTTGA+AGG | + | chr7.4:18654436-18654455 | None:intergenic | 55.0% |
| AAACGCCACCGAAGTGGCTC+TGG | - | chr7.4:18654439-18654458 | MS.gene39139:intron | 60.0% | |
| AACGCCACCGAAGTGGCTCT+GGG | - | chr7.4:18654440-18654459 | MS.gene39139:intron | 60.0% | |
| CACGAAAGGAGGGACTGCAG+TGG | + | chr7.4:18654734-18654753 | None:intergenic | 60.0% | |
| GGCATCACTGCAACAGCTGC+AGG | - | chr7.4:18656241-18656260 | MS.gene39139:CDS | 60.0% | |
| TCCTAGGAGTCGGCAGCTTC+TGG | - | chr7.4:18654946-18654965 | MS.gene39139:intron | 60.0% | |
| !! | TCCAGAAGCTGCCGACTCCT+AGG | + | chr7.4:18654950-18654969 | None:intergenic | 60.0% |
| ACTGCAGTGGCCCTAAGGCG+AGG | + | chr7.4:18654721-18654740 | None:intergenic | 65.0% | |
| CCAAGGGATCTGATCGCCGC+CGG | + | chr7.4:18653496-18653515 | None:intergenic | 65.0% | |
| GAGGGACTGCAGTGGCCCTA+AGG | + | chr7.4:18654726-18654745 | None:intergenic | 65.0% | |
| TGACCCCAGAGCCACTTCGG+TGG | + | chr7.4:18654447-18654466 | None:intergenic | 65.0% | |
| ! | ACGCCACCGAAGTGGCTCTG+GGG | - | chr7.4:18654441-18654460 | MS.gene39139:intron | 65.0% |
| CCGGCGGCGATCAGATCCCT+TGG | - | chr7.4:18653493-18653512 | MS.gene39139:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18653444 | 18656309 | 18653444 | ID=MS.gene39139 |
| chr7.4 | mRNA | 18653444 | 18656309 | 18653444 | ID=MS.gene39139.t1;Parent=MS.gene39139 |
| chr7.4 | exon | 18656217 | 18656309 | 18656217 | ID=MS.gene39139.t1.exon1;Parent=MS.gene39139.t1 |
| chr7.4 | CDS | 18656217 | 18656309 | 18656217 | ID=cds.MS.gene39139.t1;Parent=MS.gene39139.t1 |
| chr7.4 | exon | 18655728 | 18655866 | 18655728 | ID=MS.gene39139.t1.exon2;Parent=MS.gene39139.t1 |
| chr7.4 | CDS | 18655728 | 18655866 | 18655728 | ID=cds.MS.gene39139.t1;Parent=MS.gene39139.t1 |
| chr7.4 | exon | 18654771 | 18654892 | 18654771 | ID=MS.gene39139.t1.exon3;Parent=MS.gene39139.t1 |
| chr7.4 | CDS | 18654771 | 18654892 | 18654771 | ID=cds.MS.gene39139.t1;Parent=MS.gene39139.t1 |
| chr7.4 | exon | 18653596 | 18653659 | 18653596 | ID=MS.gene39139.t1.exon4;Parent=MS.gene39139.t1 |
| chr7.4 | CDS | 18653596 | 18653659 | 18653596 | ID=cds.MS.gene39139.t1;Parent=MS.gene39139.t1 |
| chr7.4 | exon | 18653444 | 18653529 | 18653444 | ID=MS.gene39139.t1.exon5;Parent=MS.gene39139.t1 |
| chr7.4 | CDS | 18653444 | 18653529 | 18653444 | ID=cds.MS.gene39139.t1;Parent=MS.gene39139.t1 |
| Gene Sequence |
| Protein sequence |
