Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39916.t1 | AES60790.2 | 98.1 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 8.30E-103 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39916.t1 | A0A072VL99 | 98.1 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 6.0e-103 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene39916 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene39916 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene39916 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene39916 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene39916 | -0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene39916 | -0.815115 | 1.09E-51 | -1.69E-46 |
| MS.gene052108 | MS.gene39916 | 0.817193 | 3.74E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene39916 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene39916 | 0.817049 | 4.03E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene39916 | 0.832803 | 7.67E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene39916 | 0.805026 | 1.63E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene39916 | 0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene39916 | 0.834357 | 3.14E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene39916 | -0.81658 | 5.14E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene39916 | 0.806677 | 7.32E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene39916 | 0.807226 | 5.60E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene39916 | 0.841083 | 5.89E-58 | -1.69E-46 |
| MS.gene055926 | MS.gene39916 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene39916 | 0.805395 | 1.36E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene39916 | 0.805324 | 1.41E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene39916 | 0.812206 | 4.76E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene39916 | 0.838123 | 3.47E-57 | -1.69E-46 |
| MS.gene057208 | MS.gene39916 | 0.831273 | 1.83E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene39916 | 0.806522 | 7.90E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene39916 | 0.812696 | 3.72E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene39916 | 0.822964 | 1.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39916.t1 | MTR_1g070900 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 6.60e-150 | 416 |
| MS.gene39916.t1 | MTR_1g070900 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 9.80e-150 | 416 |
| MS.gene39916.t1 | MTR_1g070900 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 6.50e-138 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39916.t1 | AT5G43680 | 39.252 | 214 | 110 | 5 | 1 | 207 | 1 | 201 | 1.40e-39 | 136 |
| MS.gene39916.t1 | AT5G43680 | 39.252 | 214 | 110 | 5 | 1 | 207 | 1 | 201 | 1.40e-39 | 136 |
Find 60 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGATGAACCATTCTTTA+TGG | 0.158677 | 1.4:+58023729 | None:intergenic |
| CATAGTTCAAGAAGCAATTT+TGG | 0.174077 | 1.4:-58022867 | MS.gene39916:CDS |
| ACTTTGCATATTTAATGATT+TGG | 0.278446 | 1.4:+58023789 | None:intergenic |
| TTATTCACCCCAGCATATTC+AGG | 0.302866 | 1.4:+58023940 | None:intergenic |
| TTAGGTTCATAAGGAACTTC+AGG | 0.325877 | 1.4:-58024206 | MS.gene39916:intron |
| AGCAACTGCTTATGCAAGTT+TGG | 0.332765 | 1.4:-58023764 | MS.gene39916:CDS |
| GAGGCCATTCGTCATGAAAT+TGG | 0.333625 | 1.4:-58024166 | MS.gene39916:CDS |
| AGCTAGCCTCCCTGCTGTTC+TGG | 0.335117 | 1.4:+58024734 | None:intergenic |
| TGGAGAAATATTTCTGTTGC+TGG | 0.344609 | 1.4:-58024890 | MS.gene39916:CDS |
| GGAGCTACTGCTGCTGTGAT+TGG | 0.363534 | 1.4:-58024868 | MS.gene39916:intron |
| GATATCATTGGCAAATCCTT+TGG | 0.363620 | 1.4:+58024756 | None:intergenic |
| CCAGTTTCTGCTGAAAATAC+TGG | 0.392588 | 1.4:-58023655 | MS.gene39916:CDS |
| AGCAGGGAGGCTAGCTGGAC+GGG | 0.426637 | 1.4:-58024727 | MS.gene39916:CDS |
| GATGAACCATTCTTTATGGC+AGG | 0.436847 | 1.4:+58023733 | None:intergenic |
| AGGCTAGCTGGACGGGCAGT+TGG | 0.440898 | 1.4:-58024720 | MS.gene39916:CDS |
| TTATCATGCCTCCGAGTTGA+TGG | 0.457366 | 1.4:+58024118 | None:intergenic |
| GGCAGTTGGATATGTACAAT+TGG | 0.468263 | 1.4:-58024706 | MS.gene39916:CDS |
| AGAACAGCAGGGAGGCTAGC+TGG | 0.471150 | 1.4:-58024732 | MS.gene39916:CDS |
| TGCATATTTAATGATTTGGA+TGG | 0.478378 | 1.4:+58023793 | None:intergenic |
| CCTGCTGTTCTGGATATCAT+TGG | 0.485428 | 1.4:+58024744 | None:intergenic |
| AGCATATCATTCATAAATCC+TGG | 0.488462 | 1.4:-58024142 | MS.gene39916:CDS |
| GAAGTTGAGGATGTTAAAGT+TGG | 0.493213 | 1.4:-58023697 | MS.gene39916:CDS |
| GGAGAAATATTTCTGTTGCT+GGG | 0.498165 | 1.4:-58024889 | MS.gene39916:CDS |
| CCAATGATATCCAGAACAGC+AGG | 0.503283 | 1.4:-58024744 | MS.gene39916:CDS |
| TGCTTATGCAAGTTTGGCAC+AGG | 0.516642 | 1.4:-58023758 | MS.gene39916:CDS |
| GACAGAAAACCTGAATATGC+TGG | 0.517261 | 1.4:-58023949 | MS.gene39916:CDS |
| GGCAAATAGCACTGAAGTTG+AGG | 0.519368 | 1.4:-58023710 | MS.gene39916:CDS |
| CTGGACTCTTACCAAATCGC+GGG | 0.532450 | 1.4:-58023636 | MS.gene39916:CDS |
| CAAGAACACTGAACAATGCT+GGG | 0.533552 | 1.4:-58024922 | None:intergenic |
| TGCCTCCGAGTTGATGGGCC+AGG | 0.534429 | 1.4:+58024124 | None:intergenic |
| CTCAATATCCTCTCATACCA+AGG | 0.536160 | 1.4:-58023917 | MS.gene39916:intron |
| ATGAACCATTCTTTATGGCA+GGG | 0.539656 | 1.4:+58023734 | None:intergenic |
| CAGGCCCCTGCCATAAAGAA+TGG | 0.540758 | 1.4:-58023739 | MS.gene39916:CDS |
| ACAGAAAACCTGAATATGCT+GGG | 0.542451 | 1.4:-58023948 | MS.gene39916:CDS |
| TGAACCATTCTTTATGGCAG+GGG | 0.543010 | 1.4:+58023735 | None:intergenic |
| CAGCAGGGAGGCTAGCTGGA+CGG | 0.554377 | 1.4:-58024728 | MS.gene39916:CDS |
| TATCATGCCTCCGAGTTGAT+GGG | 0.558095 | 1.4:+58024119 | None:intergenic |
| GTATTAGGAGCTGATTTGAA+AGG | 0.559557 | 1.4:-58022896 | MS.gene39916:intron |
| GGAAACAATGGCACAGCTAG+AGG | 0.560838 | 1.4:-58024185 | MS.gene39916:CDS |
| GCTTCCAATTTCATGACGAA+TGG | 0.565267 | 1.4:+58024162 | None:intergenic |
| TGCCATAAAGAATGGTTCAT+CGG | 0.576466 | 1.4:-58023731 | MS.gene39916:CDS |
| TAACAGAATCAAACTGTCCA+CGG | 0.582925 | 1.4:+58024682 | None:intergenic |
| GACCAGGCATCTATCTCAGA+TGG | 0.583124 | 1.4:-58024091 | MS.gene39916:intron |
| TGAATGTGCAATAGGTCCAA+AGG | 0.583719 | 1.4:-58024772 | MS.gene39916:intron |
| TACCATCTGAGATAGATGCC+TGG | 0.593353 | 1.4:+58024089 | None:intergenic |
| TAAATCCTGGCCCATCAACT+CGG | 0.600125 | 1.4:-58024129 | MS.gene39916:CDS |
| TCAATAAACCTTGGTATGAG+AGG | 0.600322 | 1.4:+58023909 | None:intergenic |
| CTTCAGGACAGAAAATCTCA+AGG | 0.613401 | 1.4:-58022608 | MS.gene39916:intron |
| AACAGAATCAAACTGTCCAC+GGG | 0.614960 | 1.4:+58024683 | None:intergenic |
| TAAGGAACTTCAGGAAACAA+TGG | 0.628004 | 1.4:-58024197 | MS.gene39916:CDS |
| ACTGGACTCTTACCAAATCG+CGG | 0.630502 | 1.4:-58023637 | MS.gene39916:CDS |
| GCAGCGATCTCAAGTTAACC+AGG | 0.643061 | 1.4:-58024658 | MS.gene39916:intron |
| GAGGCATGATAATCTTGACC+AGG | 0.644493 | 1.4:-58024107 | MS.gene39916:CDS |
| TGGACTCTTACCAAATCGCG+GGG | 0.678679 | 1.4:-58023635 | MS.gene39916:CDS |
| CAATGATATCCAGAACAGCA+GGG | 0.689974 | 1.4:-58024743 | MS.gene39916:CDS |
| CAGAAAACCTGAATATGCTG+GGG | 0.698864 | 1.4:-58023947 | MS.gene39916:CDS |
| ATCCTGGCCCATCAACTCGG+AGG | 0.708372 | 1.4:-58024126 | MS.gene39916:CDS |
| GGATATGTACAATTGGCCCG+TGG | 0.725712 | 1.4:-58024699 | MS.gene39916:CDS |
| TGATATCCAGAACAGCAGGG+AGG | 0.762499 | 1.4:-58024740 | MS.gene39916:CDS |
| GGACTCTTACCAAATCGCGG+GGG | 0.774422 | 1.4:-58023634 | MS.gene39916:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAAAAAAAAA+TGG | + | chr1.4:58023210-58023191 | None:intergenic | 0.0% |
| !!! | AAAAAAGATTATGATTTTTT+TGG | - | chr1.4:58023034-58023053 | MS.gene39916:intron | 10.0% |
| !!! | TTTTTTAAAAAAAAAATGGA+AGG | + | chr1.4:58023187-58023206 | None:intergenic | 10.0% |
| !! | ACTAATAAATAATGAAAAGA+AGG | + | chr1.4:58024413-58024432 | None:intergenic | 15.0% |
| !! | AGTCATTAACAATTAATATT+AGG | + | chr1.4:58022893-58022912 | None:intergenic | 15.0% |
| !! | ATTATTTATTAGTAAATGCA+TGG | - | chr1.4:58024420-58024439 | MS.gene39916:intron | 15.0% |
| !!! | AAACAATTTTTATAATCTTC+TGG | + | chr1.4:58024364-58024383 | None:intergenic | 15.0% |
| !!! | ACTATATTTTGTTATTCAAA+AGG | - | chr1.4:58024265-58024284 | MS.gene39916:intron | 15.0% |
| !!! | GAAAAATTAAGGTATTATTT+AGG | + | chr1.4:58024679-58024698 | None:intergenic | 15.0% |
| !!! | TTTAAAATGAATTTTTTCCA+TGG | + | chr1.4:58022962-58022981 | None:intergenic | 15.0% |
| !! | AAAATCAAATATGAGTGATA+GGG | - | chr1.4:58024649-58024668 | MS.gene39916:intron | 20.0% |
| !! | ACTTTGCATATTTAATGATT+TGG | + | chr1.4:58023662-58023681 | None:intergenic | 20.0% |
| !! | CTGTAATCTAAATTATTGAT+GGG | - | chr1.4:58024483-58024502 | MS.gene39916:intron | 20.0% |
| !! | GTACATACTATAAAATTATC+AGG | + | chr1.4:58023575-58023594 | None:intergenic | 20.0% |
| !! | TTATTCTTCTGTTTATCATA+AGG | - | chr1.4:58022613-58022632 | MS.gene39916:intron | 20.0% |
| !! | TTTCTTCATTTAGAAATTTC+AGG | + | chr1.4:58022992-58023011 | None:intergenic | 20.0% |
| !!! | ACGTGTATATATTTATTTCT+AGG | - | chr1.4:58023618-58023637 | MS.gene39916:intron | 20.0% |
| !!! | CAAGTAAGATTTTAAAAGTT+AGG | - | chr1.4:58023112-58023131 | MS.gene39916:intron | 20.0% |
| !!! | TATCACTCATATTTGATTTT+GGG | + | chr1.4:58024649-58024668 | None:intergenic | 20.0% |
| !!! | TTATGATTTTTTTGGCATTT+TGG | - | chr1.4:58023042-58023061 | MS.gene39916:intron | 20.0% |
| ! | AAATTGGCAAAATATAACCA+TGG | - | chr1.4:58022942-58022961 | MS.gene39916:intron | 25.0% |
| ! | AACATGGTTATACAAAATCT+CGG | + | chr1.4:58023454-58023473 | None:intergenic | 25.0% |
| ! | ACCTAAAATACAACATATGT+TGG | + | chr1.4:58023228-58023247 | None:intergenic | 25.0% |
| ! | ATGACTTAATGTGTTACATT+TGG | - | chr1.4:58022907-58022926 | MS.gene39916:intron | 25.0% |
| ! | CAAAATCAAATATGAGTGAT+AGG | - | chr1.4:58024648-58024667 | MS.gene39916:intron | 25.0% |
| ! | CAATAATTTAGATTACAGCT+AGG | + | chr1.4:58024481-58024500 | None:intergenic | 25.0% |
| ! | GATATCAGACAATCATATTA+AGG | + | chr1.4:58023871-58023890 | None:intergenic | 25.0% |
| ! | GCTAACATCTAGAAAAATTA+AGG | + | chr1.4:58024690-58024709 | None:intergenic | 25.0% |
| ! | GCTGTAATCTAAATTATTGA+TGG | - | chr1.4:58024482-58024501 | MS.gene39916:intron | 25.0% |
| ! | TGCAACAATAAACAATAACA+TGG | + | chr1.4:58023470-58023489 | None:intergenic | 25.0% |
| ! | TTCGTTCATTGTTTATACTT+TGG | - | chr1.4:58024315-58024334 | MS.gene39916:intron | 25.0% |
| ! | TTGGTTTCTTGCTAAAAAAT+TGG | - | chr1.4:58022926-58022945 | MS.gene39916:intron | 25.0% |
| !! | AATGCTTTAAATTGCTTATC+CGG | - | chr1.4:58022649-58022668 | MS.gene39916:intron | 25.0% |
| !! | ACCAACATATGTTGTATTTT+AGG | - | chr1.4:58023224-58023243 | MS.gene39916:intron | 25.0% |
| !! | TAAAATTATCAGGTTGTATC+TGG | + | chr1.4:58023565-58023584 | None:intergenic | 25.0% |
| !! | TGCATATTTAATGATTTGGA+TGG | + | chr1.4:58023658-58023677 | None:intergenic | 25.0% |
| !!! | AATAATTTTTGCTGTGTAGT+TGG | - | chr1.4:58023841-58023860 | MS.gene39916:intron | 25.0% |
| !!! | ATATTTTAGCTTGAAGGTAT+TGG | - | chr1.4:58024743-58024762 | MS.gene39916:CDS | 25.0% |
| !!! | ATCACTCATATTTGATTTTG+GGG | + | chr1.4:58024648-58024667 | None:intergenic | 25.0% |
| !!! | ATTATAAGTTGATCGTAGAA+AGG | + | chr1.4:58022823-58022842 | None:intergenic | 25.0% |
| !!! | ATTTTGTTATTCAAAAGGTC+CGG | - | chr1.4:58024270-58024289 | MS.gene39916:intron | 25.0% |
| !!! | CTATCACTCATATTTGATTT+TGG | + | chr1.4:58024650-58024669 | None:intergenic | 25.0% |
| !!! | TAGTGTATATTTTAGCTTGA+AGG | - | chr1.4:58024737-58024756 | MS.gene39916:CDS | 25.0% |
| !!! | TGTTGTATTTTAGGTTCATA+AGG | - | chr1.4:58023233-58023252 | MS.gene39916:intron | 25.0% |
| !!! | TTATAAGTTGATCGTAGAAA+GGG | + | chr1.4:58022822-58022841 | None:intergenic | 25.0% |
| AGCATATCATTCATAAATCC+TGG | - | chr1.4:58023306-58023325 | MS.gene39916:intron | 30.0% | |
| CAAAATCTCGGTAATTGTAT+CGG | + | chr1.4:58023442-58023461 | None:intergenic | 30.0% | |
| CGATCAACTTATAATTCACA+TGG | - | chr1.4:58022828-58022847 | MS.gene39916:intron | 30.0% | |
| GTTGAGAAAAAATCTATCAC+AGG | + | chr1.4:58023966-58023985 | None:intergenic | 30.0% | |
| TTAGGAACATCATAACATCA+AGG | - | chr1.4:58023130-58023149 | MS.gene39916:intron | 30.0% | |
| TTCAATACATGCATATGTAC+AGG | - | chr1.4:58024175-58024194 | MS.gene39916:CDS | 30.0% | |
| TTTATAGTATGTACTGCTCT+AGG | - | chr1.4:58023581-58023600 | MS.gene39916:intron | 30.0% | |
| ! | AAACAAGCTTTGGTTGTATT+AGG | - | chr1.4:58024537-58024556 | MS.gene39916:intron | 30.0% |
| ! | ATCGCTACGTATATCATTTT+TGG | + | chr1.4:58024907-58024926 | None:intergenic | 30.0% |
| ! | ATCTGATTTGAAACAAGCTT+TGG | - | chr1.4:58024527-58024546 | MS.gene39916:intron | 30.0% |
| ! | CATAGTTCAAGAAGCAATTT+TGG | - | chr1.4:58024581-58024600 | MS.gene39916:intron | 30.0% |
| ! | TCACATGGATTTGTTTCATT+AGG | - | chr1.4:58022843-58022862 | MS.gene39916:intron | 30.0% |
| ! | TGTTTATACTTTGGCTCATT+TGG | - | chr1.4:58024324-58024343 | MS.gene39916:intron | 30.0% |
| !! | GAATGCTTGTGTTTTTAACT+AGG | - | chr1.4:58024862-58024881 | MS.gene39916:intron | 30.0% |
| AAAGTGAATCGCATGTAGTT+GGG | + | chr1.4:58023071-58023090 | None:intergenic | 35.0% | |
| AAGAAAGCCATAAACATCAC+AGG | + | chr1.4:58024024-58024043 | None:intergenic | 35.0% | |
| ACAGAAAACCTGAATATGCT+GGG | - | chr1.4:58023500-58023519 | MS.gene39916:intron | 35.0% | |
| ATGAACCATTCTTTATGGCA+GGG | + | chr1.4:58023717-58023736 | None:intergenic | 35.0% | |
| CAAGCAAAAACCTTAACTTC+CGG | + | chr1.4:58024292-58024311 | None:intergenic | 35.0% | |
| GAAGTTGAGGATGTTAAAGT+TGG | - | chr1.4:58023751-58023770 | MS.gene39916:CDS | 35.0% | |
| GATATCATTGGCAAATCCTT+TGG | + | chr1.4:58022695-58022714 | None:intergenic | 35.0% | |
| TAACAGAATCAAACTGTCCA+CGG | + | chr1.4:58022769-58022788 | None:intergenic | 35.0% | |
| TAAGGAACTTCAGGAAACAA+TGG | - | chr1.4:58023251-58023270 | MS.gene39916:intron | 35.0% | |
| TCAATAAACCTTGGTATGAG+AGG | + | chr1.4:58023542-58023561 | None:intergenic | 35.0% | |
| TGCCATAAAGAATGGTTCAT+CGG | - | chr1.4:58023717-58023736 | MS.gene39916:CDS | 35.0% | |
| TGTATCTGGTCAATAAACCT+TGG | + | chr1.4:58023551-58023570 | None:intergenic | 35.0% | |
| TTAGGTTCATAAGGAACTTC+AGG | - | chr1.4:58023242-58023261 | MS.gene39916:intron | 35.0% | |
| TTCGATACATGCATATGTAC+AGG | - | chr1.4:58024053-58024072 | MS.gene39916:intron | 35.0% | |
| TTGTGATCCTGTGATGTTTA+TGG | - | chr1.4:58024014-58024033 | MS.gene39916:intron | 35.0% | |
| ! | AGTTCAAGAAGCAATTTTGG+AGG | - | chr1.4:58024584-58024603 | MS.gene39916:intron | 35.0% |
| ! | CCTATTGCACATTCATTTTC+CGG | + | chr1.4:58022671-58022690 | None:intergenic | 35.0% |
| ! | GGAGAAATATTTCTGTTGCT+GGG | - | chr1.4:58022559-58022578 | MS.gene39916:CDS | 35.0% |
| ! | TGGAGAAATATTTCTGTTGC+TGG | - | chr1.4:58022558-58022577 | MS.gene39916:CDS | 35.0% |
| !! | GACTTTACCACGTTTTAGTA+TGG | + | chr1.4:58023165-58023184 | None:intergenic | 35.0% |
| !! | GTATTAGGAGCTGATTTGAA+AGG | - | chr1.4:58024552-58024571 | MS.gene39916:intron | 35.0% |
| AACAGAATCAAACTGTCCAC+GGG | + | chr1.4:58022768-58022787 | None:intergenic | 40.0% | |
| AGAGGTAGCTCATAATGCAA+AGG | - | chr1.4:58024608-58024627 | MS.gene39916:intron | 40.0% | |
| AGCAACTGCTTATGCAAGTT+TGG | - | chr1.4:58023684-58023703 | MS.gene39916:CDS | 40.0% | |
| CAAAGTGAATCGCATGTAGT+TGG | + | chr1.4:58023072-58023091 | None:intergenic | 40.0% | |
| CAATGATATCCAGAACAGCA+GGG | - | chr1.4:58022705-58022724 | MS.gene39916:intron | 40.0% | |
| CAGAAAACCTGAATATGCTG+GGG | - | chr1.4:58023501-58023520 | MS.gene39916:intron | 40.0% | |
| CCAGTTTCTGCTGAAAATAC+TGG | - | chr1.4:58023793-58023812 | MS.gene39916:CDS | 40.0% | |
| CCGGAAAATGAATGTGCAAT+AGG | - | chr1.4:58022668-58022687 | MS.gene39916:intron | 40.0% | |
| CTCAATATCCTCTCATACCA+AGG | - | chr1.4:58023531-58023550 | MS.gene39916:intron | 40.0% | |
| CTTCAGGACAGAAAATCTCA+AGG | - | chr1.4:58024840-58024859 | MS.gene39916:intron | 40.0% | |
| GACAGAAAACCTGAATATGC+TGG | - | chr1.4:58023499-58023518 | MS.gene39916:intron | 40.0% | |
| GATGAACCATTCTTTATGGC+AGG | + | chr1.4:58023718-58023737 | None:intergenic | 40.0% | |
| GCTTCCAATTTCATGACGAA+TGG | + | chr1.4:58023289-58023308 | None:intergenic | 40.0% | |
| GGCAGTTGGATATGTACAAT+TGG | - | chr1.4:58022742-58022761 | MS.gene39916:intron | 40.0% | |
| GTTACCAGTTCTTGTTCTTC+AGG | - | chr1.4:58024824-58024843 | MS.gene39916:intron | 40.0% | |
| TGAACCATTCTTTATGGCAG+GGG | + | chr1.4:58023716-58023735 | None:intergenic | 40.0% | |
| TGAATGTGCAATAGGTCCAA+AGG | - | chr1.4:58022676-58022695 | MS.gene39916:intron | 40.0% | |
| TGCCGATGAACCATTCTTTA+TGG | + | chr1.4:58023722-58023741 | None:intergenic | 40.0% | |
| TTATTATTACCCCCGCGATT+TGG | + | chr1.4:58023826-58023845 | None:intergenic | 40.0% | |
| TTATTCACCCCAGCATATTC+AGG | + | chr1.4:58023511-58023530 | None:intergenic | 40.0% | |
| TTCAAAAGGTCCGGAAGTTA+AGG | - | chr1.4:58024279-58024298 | MS.gene39916:intron | 40.0% | |
| ! | CCAGTATTTTCAGCAGAAAC+TGG | + | chr1.4:58023796-58023815 | None:intergenic | 40.0% |
| !! | TACCACGTTTTAGTATGGAC+AGG | + | chr1.4:58023160-58023179 | None:intergenic | 40.0% |
| ACTGGACTCTTACCAAATCG+CGG | - | chr1.4:58023811-58023830 | MS.gene39916:CDS | 45.0% | |
| CCAATGATATCCAGAACAGC+AGG | - | chr1.4:58022704-58022723 | MS.gene39916:intron | 45.0% | |
| CTGTCCTGAAGAACAAGAAC+TGG | + | chr1.4:58024831-58024850 | None:intergenic | 45.0% | |
| GAGGCATGATAATCTTGACC+AGG | - | chr1.4:58023341-58023360 | MS.gene39916:intron | 45.0% | |
| GAGGCCATTCGTCATGAAAT+TGG | - | chr1.4:58023282-58023301 | MS.gene39916:intron | 45.0% | |
| TAAATCCTGGCCCATCAACT+CGG | - | chr1.4:58023319-58023338 | MS.gene39916:intron | 45.0% | |
| TGCCTGTCCATACTAAAACG+TGG | - | chr1.4:58023155-58023174 | MS.gene39916:intron | 45.0% | |
| TGCTTATGCAAGTTTGGCAC+AGG | - | chr1.4:58023690-58023709 | MS.gene39916:CDS | 45.0% | |
| ! | CCTGCTGTTCTGGATATCAT+TGG | + | chr1.4:58022707-58022726 | None:intergenic | 45.0% |
| ! | GGCAAATAGCACTGAAGTTG+AGG | - | chr1.4:58023738-58023757 | MS.gene39916:CDS | 45.0% |
| ! | TACCATCTGAGATAGATGCC+TGG | + | chr1.4:58023362-58023381 | None:intergenic | 45.0% |
| ! | TTATCATGCCTCCGAGTTGA+TGG | + | chr1.4:58023333-58023352 | None:intergenic | 45.0% |
| !! | AGAAGCAATTTTGGAGGCAG+AGG | - | chr1.4:58024590-58024609 | MS.gene39916:intron | 45.0% |
| !! | TATCATGCCTCCGAGTTGAT+GGG | + | chr1.4:58023332-58023351 | None:intergenic | 45.0% |
| CTACTGCTGCTGTGATTGGT+TGG | - | chr1.4:58022584-58022603 | MS.gene39916:CDS | 50.0% | |
| CTGGACTCTTACCAAATCGC+GGG | - | chr1.4:58023812-58023831 | MS.gene39916:intron | 50.0% | |
| GACCAGGCATCTATCTCAGA+TGG | - | chr1.4:58023357-58023376 | MS.gene39916:intron | 50.0% | |
| GCAGCGATCTCAAGTTAACC+AGG | - | chr1.4:58022790-58022809 | MS.gene39916:intron | 50.0% | |
| GGAAACAATGGCACAGCTAG+AGG | - | chr1.4:58023263-58023282 | MS.gene39916:intron | 50.0% | |
| GGATATGTACAATTGGCCCG+TGG | - | chr1.4:58022749-58022768 | MS.gene39916:intron | 50.0% | |
| TGATATCCAGAACAGCAGGG+AGG | - | chr1.4:58022708-58022727 | MS.gene39916:intron | 50.0% | |
| TGGACTCTTACCAAATCGCG+GGG | - | chr1.4:58023813-58023832 | MS.gene39916:intron | 50.0% | |
| !! | TCGTAGAAAGGGAGAGTACC+TGG | + | chr1.4:58022811-58022830 | None:intergenic | 50.0% |
| CAGGCCCCTGCCATAAAGAA+TGG | - | chr1.4:58023709-58023728 | MS.gene39916:CDS | 55.0% | |
| GGACTCTTACCAAATCGCGG+GGG | - | chr1.4:58023814-58023833 | MS.gene39916:intron | 55.0% | |
| GGAGCTACTGCTGCTGTGAT+TGG | - | chr1.4:58022580-58022599 | MS.gene39916:CDS | 55.0% | |
| AGAACAGCAGGGAGGCTAGC+TGG | - | chr1.4:58022716-58022735 | MS.gene39916:intron | 60.0% | |
| ATCCTGGCCCATCAACTCGG+AGG | - | chr1.4:58023322-58023341 | MS.gene39916:intron | 60.0% | |
| ! | AGCTAGCCTCCCTGCTGTTC+TGG | + | chr1.4:58022717-58022736 | None:intergenic | 60.0% |
| ! | AGCAGGGAGGCTAGCTGGAC+GGG | - | chr1.4:58022721-58022740 | MS.gene39916:intron | 65.0% |
| ! | AGGCTAGCTGGACGGGCAGT+TGG | - | chr1.4:58022728-58022747 | MS.gene39916:intron | 65.0% |
| ! | CAGCAGGGAGGCTAGCTGGA+CGG | - | chr1.4:58022720-58022739 | MS.gene39916:intron | 65.0% |
| !! | TGCCTCCGAGTTGATGGGCC+AGG | + | chr1.4:58023327-58023346 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58022541 | 58024929 | 58022541 | ID=MS.gene39916 |
| chr1.4 | mRNA | 58022541 | 58024929 | 58022541 | ID=MS.gene39916.t1;Parent=MS.gene39916 |
| chr1.4 | exon | 58024869 | 58024929 | 58024869 | ID=MS.gene39916.t1.exon1;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58024869 | 58024929 | 58024869 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| chr1.4 | exon | 58024659 | 58024780 | 58024659 | ID=MS.gene39916.t1.exon2;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58024659 | 58024780 | 58024659 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| chr1.4 | exon | 58024092 | 58024224 | 58024092 | ID=MS.gene39916.t1.exon3;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58024092 | 58024224 | 58024092 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| chr1.4 | exon | 58023918 | 58023973 | 58023918 | ID=MS.gene39916.t1.exon4;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58023918 | 58023973 | 58023918 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| chr1.4 | exon | 58023635 | 58023830 | 58023635 | ID=MS.gene39916.t1.exon5;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58023635 | 58023830 | 58023635 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| chr1.4 | exon | 58022859 | 58022911 | 58022859 | ID=MS.gene39916.t1.exon6;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58022859 | 58022911 | 58022859 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| chr1.4 | exon | 58022541 | 58022624 | 58022541 | ID=MS.gene39916.t1.exon7;Parent=MS.gene39916.t1 |
| chr1.4 | CDS | 58022541 | 58022624 | 58022541 | ID=cds.MS.gene39916.t1;Parent=MS.gene39916.t1 |
| Gene Sequence |
| Protein sequence |
