Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40321.t1 | XP_013461988.1 | 99.4 | 511 | 3 | 0 | 1 | 511 | 1 | 511 | 1.30E-297 | 1031.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40321.t1 | A7SDW5 | 45.1 | 503 | 250 | 8 | 20 | 508 | 35 | 525 | 1.8e-127 | 457.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40321.t1 | G7ZWE0 | 99.4 | 511 | 3 | 0 | 1 | 511 | 1 | 511 | 9.1e-298 | 1031.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene40321 | 0.88577 | 6.11E-72 | -1.69E-46 |
| MS.gene049376 | MS.gene40321 | 0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene051925 | MS.gene40321 | 0.877352 | 6.73E-69 | -1.69E-46 |
| MS.gene051927 | MS.gene40321 | 0.878746 | 2.19E-69 | -1.69E-46 |
| MS.gene052666 | MS.gene40321 | 0.816248 | 6.10E-52 | -1.69E-46 |
| MS.gene054624 | MS.gene40321 | 0.830884 | 2.28E-55 | -1.69E-46 |
| MS.gene057321 | MS.gene40321 | 0.864966 | 8.31E-65 | -1.69E-46 |
| MS.gene060483 | MS.gene40321 | 0.820633 | 6.19E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40321 | MS.gene031205 | PPI |
| MS.gene75309 | MS.gene40321 | PPI |
| MS.gene40321 | MS.gene014663 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40321.t1 | MTR_3g110068 | 99.413 | 511 | 3 | 0 | 1 | 511 | 1 | 511 | 0.0 | 1064 |
| MS.gene40321.t1 | MTR_3g109300 | 43.066 | 137 | 45 | 5 | 255 | 378 | 107 | 223 | 1.68e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40321.t1 | AT5G25757 | 82.677 | 508 | 86 | 2 | 5 | 511 | 8 | 514 | 0.0 | 877 |
| MS.gene40321.t1 | AT5G25754 | 82.677 | 508 | 86 | 2 | 5 | 511 | 8 | 514 | 0.0 | 877 |
Find 104 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCAGGTGGTTCTTCA+TGG | 0.182026 | 3.4:-94960270 | MS.gene40321:CDS |
| TAATTACTGCAGTCTCTTTC+AGG | 0.198149 | 3.4:-94960283 | MS.gene40321:CDS |
| GAATCAATGGCTTTGGGATA+TGG | 0.229252 | 3.4:-94960226 | MS.gene40321:CDS |
| AAGTAGATGAACCAACTTTA+AGG | 0.240848 | 3.4:-94956496 | MS.gene40321:intron |
| TACTAGAGGCTCTTCAAAAC+TGG | 0.270914 | 3.4:+94957300 | None:intergenic |
| TAGCAATGTCTTGAAAGTTT+TGG | 0.293530 | 3.4:-94959101 | MS.gene40321:CDS |
| TTCATCAACAAGCCTGCTTT+GGG | 0.303001 | 3.4:+94957456 | None:intergenic |
| GGTGTTTACACCATTGTTAT+TGG | 0.316510 | 3.4:-94958980 | MS.gene40321:CDS |
| CGCTGAAGGGGTAATAAACT+TGG | 0.322037 | 3.4:+94957324 | None:intergenic |
| CTGAGGGTTCATTGTCTCTT+GGG | 0.323751 | 3.4:-94959055 | MS.gene40321:CDS |
| GCTGAGGGTTCATTGTCTCT+TGG | 0.330424 | 3.4:-94959056 | MS.gene40321:CDS |
| ATTACCACCATTTACCACTA+TGG | 0.330766 | 3.4:-94958950 | MS.gene40321:CDS |
| AGCTTCCGAATCAATGGCTT+TGG | 0.332438 | 3.4:-94960233 | MS.gene40321:CDS |
| TTTCATCAACAAGCCTGCTT+TGG | 0.334356 | 3.4:+94957455 | None:intergenic |
| GGAAAGAAGTTTCGTACATT+TGG | 0.342653 | 3.4:+94960475 | None:intergenic |
| GGCAAAACCATAGTGGTAAA+TGG | 0.355256 | 3.4:+94958943 | None:intergenic |
| CTTCTTGCGTCAGGTTGTTA+AGG | 0.370724 | 3.4:-94955851 | MS.gene40321:intron |
| AAGCAACAACAGTTGTTATC+AGG | 0.387793 | 3.4:-94956581 | MS.gene40321:CDS |
| CCTATCTGACCGTTTCTTCA+AGG | 0.387841 | 3.4:-94960448 | MS.gene40321:CDS |
| AGAAACGGTCAGATAGGGTT+TGG | 0.394229 | 3.4:+94960454 | None:intergenic |
| TGAACAAATGTATGCGTTGC+TGG | 0.399391 | 3.4:-94957500 | MS.gene40321:CDS |
| GTTGTTGCTTTGCTTCATAA+AGG | 0.402516 | 3.4:+94956594 | None:intergenic |
| CCTGACTGACTAATATCAAT+AGG | 0.413043 | 3.4:+94959001 | None:intergenic |
| TTCAATATCTGTTCATATTG+TGG | 0.422018 | 3.4:+94957529 | None:intergenic |
| ACTGGATCGGGAACGAAGTT+GGG | 0.422123 | 3.4:+94960558 | None:intergenic |
| CTTGTACATCTTTAAGTACA+AGG | 0.428339 | 3.4:-94957569 | MS.gene40321:CDS |
| TCTCAGTTGCGAGAGAAGTA+TGG | 0.431894 | 3.4:-94957424 | MS.gene40321:CDS |
| CCTATTGATATTAGTCAGTC+AGG | 0.436140 | 3.4:-94959001 | MS.gene40321:CDS |
| TTGGGGTATTTCAGTATGGT+TGG | 0.437805 | 3.4:-94959082 | MS.gene40321:CDS |
| GACTGGATCGGGAACGAAGT+TGG | 0.438328 | 3.4:+94960557 | None:intergenic |
| GAAGTAATCTCCATACCGTT+TGG | 0.439729 | 3.4:+94955870 | None:intergenic |
| GCTTCCGAATCAATGGCTTT+GGG | 0.440244 | 3.4:-94960232 | MS.gene40321:CDS |
| TGCAAAACTTGCAAGTTACA+TGG | 0.442232 | 3.4:-94956519 | MS.gene40321:CDS |
| GTCTTGTTTGCAGCTTGAAA+AGG | 0.447914 | 3.4:-94955684 | MS.gene40321:intron |
| TCTTCAAAACTGGGCGCTGA+AGG | 0.452512 | 3.4:+94957310 | None:intergenic |
| CCTTGAAGAAACGGTCAGAT+AGG | 0.454544 | 3.4:+94960448 | None:intergenic |
| TGGAGATTACTTCTTGCGTC+AGG | 0.454633 | 3.4:-94955860 | MS.gene40321:CDS |
| AAGAAGTTTCGTACATTTGG+TGG | 0.477971 | 3.4:+94960478 | None:intergenic |
| AATATACTTTCAAGAAGGTC+CGG | 0.484004 | 3.4:+94956555 | None:intergenic |
| CAGTATGGTTGGTTTGCTGA+GGG | 0.489529 | 3.4:-94959071 | MS.gene40321:CDS |
| TCTCTTGAAACAGTTCGATC+AGG | 0.490945 | 3.4:-94960124 | MS.gene40321:intron |
| TGACCTGCGGAGCATAAGAT+TGG | 0.496399 | 3.4:+94958922 | None:intergenic |
| TCAGTATGGTTGGTTTGCTG+AGG | 0.497191 | 3.4:-94959072 | MS.gene40321:CDS |
| AAGTCTTGCAACCTTAAAGT+TGG | 0.500427 | 3.4:+94956485 | None:intergenic |
| ATATGCAGCTTCCGAATCAA+TGG | 0.505365 | 3.4:-94960239 | MS.gene40321:CDS |
| CTTCAAAACTGGGCGCTGAA+GGG | 0.514443 | 3.4:+94957311 | None:intergenic |
| ACTCATGCTGTTGATAGTGC+TGG | 0.515009 | 3.4:-94956330 | MS.gene40321:CDS |
| CGAGATGGACAGTATAAAGC+TGG | 0.519050 | 3.4:-94955654 | MS.gene40321:CDS |
| CTCTTGGGTGATTATCACAC+TGG | 0.525249 | 3.4:-94959040 | MS.gene40321:CDS |
| GCTGAAGGGGTAATAAACTT+GGG | 0.527613 | 3.4:+94957325 | None:intergenic |
| TCACACTGGTCTCAAGTGCT+TGG | 0.527814 | 3.4:-94959026 | MS.gene40321:CDS |
| ATAGAAATCCACATCAGCAT+TGG | 0.528493 | 3.4:+94956296 | None:intergenic |
| TTGCCAATCTTATGCTCCGC+AGG | 0.528690 | 3.4:-94958925 | MS.gene40321:intron |
| ATATCCCAAAGCCATTGATT+CGG | 0.529948 | 3.4:+94960228 | None:intergenic |
| CTTGAAGAAACGGTCAGATA+GGG | 0.530479 | 3.4:+94960449 | None:intergenic |
| ATGGTGTGTCCTTGAAGAAA+CGG | 0.530687 | 3.4:+94960439 | None:intergenic |
| CATCAACAAGCCTGCTTTGG+GGG | 0.533539 | 3.4:+94957458 | None:intergenic |
| TAATCTCCATACCGTTTGGA+AGG | 0.533943 | 3.4:+94955874 | None:intergenic |
| AGTAATATCCAATGCTGATG+TGG | 0.534293 | 3.4:-94956304 | MS.gene40321:CDS |
| AACAGTTGTTATCAGGTCTC+CGG | 0.535364 | 3.4:-94956574 | MS.gene40321:CDS |
| TCTCTCTGATGTGACGGTAG+AGG | 0.537475 | 3.4:+94960517 | None:intergenic |
| TACTCGAGCAGGAGAAGGAA+GGG | 0.539087 | 3.4:-94959168 | MS.gene40321:CDS |
| CGAAGTTGGGATCGTAGCCT+AGG | 0.539968 | 3.4:+94960571 | None:intergenic |
| GTATTGAGCGACAGCGTCTA+CGG | 0.542427 | 3.4:+94960410 | None:intergenic |
| TGTTGAATATACTTTCAAGA+AGG | 0.551618 | 3.4:+94956550 | None:intergenic |
| TCTAAACCTTCCAAACGGTA+TGG | 0.552675 | 3.4:-94955880 | MS.gene40321:CDS |
| TCGATTCTCTGACGAAGCGT+AGG | 0.552849 | 3.4:+94960315 | None:intergenic |
| TTCAAAACTGGGCGCTGAAG+GGG | 0.556525 | 3.4:+94957312 | None:intergenic |
| CGTAGCCTAGGTCTTGAGCT+TGG | 0.560532 | 3.4:+94960583 | None:intergenic |
| TTCGTCAGAGAATCGATTCG+TGG | 0.564246 | 3.4:-94960308 | MS.gene40321:CDS |
| GTCTTCTCTACCGTGAGATG+TGG | 0.569636 | 3.4:-94960365 | MS.gene40321:CDS |
| TCAGATACTCGAGCAGGAGA+AGG | 0.571169 | 3.4:-94959173 | MS.gene40321:CDS |
| ACTAGAGGCTCTTCAAAACT+GGG | 0.572995 | 3.4:+94957301 | None:intergenic |
| ATACTCGAGCAGGAGAAGGA+AGG | 0.578832 | 3.4:-94959169 | MS.gene40321:CDS |
| CATTCTTCTCTCTGATGTGA+CGG | 0.584120 | 3.4:+94960511 | None:intergenic |
| GCAGGACACAATTCATGTTG+TGG | 0.584900 | 3.4:-94955905 | MS.gene40321:intron |
| ACAGCGTCTACGGAGGGCCA+TGG | 0.585469 | 3.4:+94960420 | None:intergenic |
| CGTCTCCAAGCTCAAGACCT+AGG | 0.590090 | 3.4:-94960588 | MS.gene40321:CDS |
| ACCTGGTTGTAATTTACTAG+AGG | 0.590170 | 3.4:+94957286 | None:intergenic |
| TAAGATTGGCAAAACCATAG+TGG | 0.590299 | 3.4:+94958936 | None:intergenic |
| AATTATTCAGATACTCGAGC+AGG | 0.592977 | 3.4:-94959179 | MS.gene40321:CDS |
| TTACTGCAGTCTCTTTCAGG+TGG | 0.600442 | 3.4:-94960280 | MS.gene40321:CDS |
| TGAAAAGGTGATCAACGAGA+TGG | 0.601494 | 3.4:-94955669 | MS.gene40321:CDS |
| TGGAGTCTAAACCTTCCAAA+CGG | 0.607048 | 3.4:-94955885 | MS.gene40321:CDS |
| CATATTGTGGAGACTTCTGA+TGG | 0.618356 | 3.4:+94957542 | None:intergenic |
| TAGGAGTGAGACGAGCATAG+AGG | 0.619056 | 3.4:+94960334 | None:intergenic |
| TCGTCAGAGAATCGATTCGT+GGG | 0.622796 | 3.4:-94960307 | MS.gene40321:CDS |
| GAGTGAGACGAGCATAGAGG+TGG | 0.627092 | 3.4:+94960337 | None:intergenic |
| GCCTCTAGTAAATTACAACC+AGG | 0.628196 | 3.4:-94957287 | MS.gene40321:intron |
| GATGGCTATGATTACAATGG+TGG | 0.631082 | 3.4:-94959124 | MS.gene40321:CDS |
| TGAGCGACAGCGTCTACGGA+GGG | 0.640297 | 3.4:+94960414 | None:intergenic |
| GGTGGCGAAACCACATCTCA+CGG | 0.647100 | 3.4:+94960355 | None:intergenic |
| GAGCAATTCACTGCAAACGA+TGG | 0.649501 | 3.4:-94959142 | MS.gene40321:CDS |
| TCATCAACAAGCCTGCTTTG+GGG | 0.650115 | 3.4:+94957457 | None:intergenic |
| AGTGGTAAATGGTGGTAATG+TGG | 0.651980 | 3.4:+94958954 | None:intergenic |
| AATGCAACGATATGATGATG+AGG | 0.655375 | 3.4:-94957386 | MS.gene40321:CDS |
| CTGAAGGGGTAATAAACTTG+GGG | 0.662460 | 3.4:+94957326 | None:intergenic |
| TTGAGCGACAGCGTCTACGG+AGG | 0.671373 | 3.4:+94960413 | None:intergenic |
| GTTTCTTCAAGGACACACCA+TGG | 0.673800 | 3.4:-94960437 | MS.gene40321:CDS |
| AAAACCATAGTGGTAAATGG+TGG | 0.678504 | 3.4:+94958946 | None:intergenic |
| GGTAGAGAAGACAGAAGACA+TGG | 0.688600 | 3.4:+94960376 | None:intergenic |
| ACGGTAGAGGTGAACAACGA+AGG | 0.689816 | 3.4:+94960530 | None:intergenic |
| AACGATGGCTATGATTACAA+TGG | 0.723830 | 3.4:-94959127 | MS.gene40321:CDS |
| AATGTGGCATCCAATAACAA+TGG | 0.744265 | 3.4:+94958970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAAAAAAAATTATTG+AGG | + | chr3.4:94957971-94957990 | None:intergenic | 10.0% |
| !! | AGTAATTTATATATTAAAAG+GGG | + | chr3.4:94959591-94959610 | None:intergenic | 10.0% |
| !! | AGTATTTATTTATGTTAAAA+TGG | - | chr3.4:94958340-94958359 | MS.gene40321:intron | 10.0% |
| !! | GAAATAAAAAAAATTATTGA+GGG | + | chr3.4:94957970-94957989 | None:intergenic | 10.0% |
| !! | TTATAAATTATTACATTACA+TGG | - | chr3.4:94958603-94958622 | MS.gene40321:intron | 10.0% |
| !!! | AAAATTTTTAAATAGTTTCT+GGG | - | chr3.4:94960065-94960084 | MS.gene40321:intron | 10.0% |
| !!! | TAAAATTTTTAAATAGTTTC+TGG | - | chr3.4:94960064-94960083 | MS.gene40321:intron | 10.0% |
| !!! | TCACATTTTAATTTTATTTT+GGG | + | chr3.4:94958153-94958172 | None:intergenic | 10.0% |
| !!! | TTCACATTTTAATTTTATTT+TGG | + | chr3.4:94958154-94958173 | None:intergenic | 10.0% |
| !!! | TTGTTTCATATTTTATAATA+GGG | + | chr3.4:94958130-94958149 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATATTGATCCA+AGG | + | chr3.4:94959814-94959833 | None:intergenic | 15.0% |
| !! | GTAATTTATATATTAAAAGG+GGG | + | chr3.4:94959590-94959609 | None:intergenic | 15.0% |
| !! | TTTAAATAACCATACTTAAT+CGG | + | chr3.4:94958189-94958208 | None:intergenic | 15.0% |
| !!! | AGATTTTATTTTAACATAAG+AGG | + | chr3.4:94957937-94957956 | None:intergenic | 15.0% |
| !!! | AGTATAAATTTTACTTTTCA+AGG | - | chr3.4:94958432-94958451 | MS.gene40321:intron | 15.0% |
| !!! | ATTTTATTTTAACATAAGAG+GGG | + | chr3.4:94957935-94957954 | None:intergenic | 15.0% |
| !!! | CTAATATGTTTTGAATAAAA+GGG | + | chr3.4:94957863-94957882 | None:intergenic | 15.0% |
| !!! | GATTTTATTTTAACATAAGA+GGG | + | chr3.4:94957936-94957955 | None:intergenic | 15.0% |
| !!! | GTATAAATTTTACTTTTCAA+GGG | - | chr3.4:94958433-94958452 | MS.gene40321:intron | 15.0% |
| !!! | GTTGTTTCATATTTTATAAT+AGG | + | chr3.4:94958131-94958150 | None:intergenic | 15.0% |
| !!! | TAATATGTTTTGAATAAAAG+GGG | + | chr3.4:94957862-94957881 | None:intergenic | 15.0% |
| !!! | TCTAATATGTTTTGAATAAA+AGG | + | chr3.4:94957864-94957883 | None:intergenic | 15.0% |
| !!! | TTTATTATCTATTTTATCAG+AGG | - | chr3.4:94956225-94956244 | MS.gene40321:intron | 15.0% |
| !!! | TTTGAAATATAATTCTACAA+TGG | + | chr3.4:94957759-94957778 | None:intergenic | 15.0% |
| !! | AAATAAGGTAAAAACAGTTA+TGG | + | chr3.4:94956840-94956859 | None:intergenic | 20.0% |
| !! | AATAATTTATAACCCATGAA+GGG | + | chr3.4:94958595-94958614 | None:intergenic | 20.0% |
| !! | CAACTAAACTAATTTATTTG+AGG | - | chr3.4:94957478-94957497 | MS.gene40321:CDS | 20.0% |
| !! | CTTATTTACTTATTAAAGGA+GGG | - | chr3.4:94958377-94958396 | MS.gene40321:intron | 20.0% |
| !! | CTTGACAAATCTAAATAATA+TGG | + | chr3.4:94960453-94960472 | None:intergenic | 20.0% |
| !! | TAATAATTTATAACCCATGA+AGG | + | chr3.4:94958596-94958615 | None:intergenic | 20.0% |
| !! | TATAGAAATAGCTTATACTT+AGG | - | chr3.4:94956754-94956773 | MS.gene40321:intron | 20.0% |
| !! | TGTTTATGCTAGTATATAAA+GGG | + | chr3.4:94956521-94956540 | None:intergenic | 20.0% |
| !! | TTATTTACTTATTAAAGGAG+GGG | - | chr3.4:94958378-94958397 | MS.gene40321:intron | 20.0% |
| !!! | AACTTCAAATTTGAAATGTT+TGG | + | chr3.4:94959065-94959084 | None:intergenic | 20.0% |
| !!! | AATTCAAATTTGAAGCTAAT+TGG | + | chr3.4:94959092-94959111 | None:intergenic | 20.0% |
| !!! | ACTTCAAATTTGAAATGTTT+GGG | + | chr3.4:94959064-94959083 | None:intergenic | 20.0% |
| !!! | AGTCCTTATTTACTTATTAA+AGG | - | chr3.4:94958373-94958392 | MS.gene40321:intron | 20.0% |
| !!! | AGTGTATATTTTAACATAAG+AGG | + | chr3.4:94957834-94957853 | None:intergenic | 20.0% |
| !!! | ATAAGCTATTTCTATAACAA+AGG | + | chr3.4:94956750-94956769 | None:intergenic | 20.0% |
| !!! | ATATTTTACATAAGCACTTA+AGG | - | chr3.4:94956946-94956965 | MS.gene40321:intron | 20.0% |
| !!! | ATTTAGGATTCATTAGAAAT+TGG | - | chr3.4:94957698-94957717 | MS.gene40321:intron | 20.0% |
| !!! | CTCAAATAAATTAGTTTAGT+TGG | + | chr3.4:94957480-94957499 | None:intergenic | 20.0% |
| !!! | GTGTATATTTTAACATAAGA+GGG | + | chr3.4:94957833-94957852 | None:intergenic | 20.0% |
| !!! | TGTATATTTTAACATAAGAG+GGG | + | chr3.4:94957832-94957851 | None:intergenic | 20.0% |
| ! | AAACCAGATTTATTTCAATC+TGG | + | chr3.4:94959196-94959215 | None:intergenic | 25.0% |
| ! | AATAAAGCCATTAACATAGA+AGG | + | chr3.4:94959487-94959506 | None:intergenic | 25.0% |
| ! | AGATTGAAATAAATCTGGTT+TGG | - | chr3.4:94959195-94959214 | MS.gene40321:CDS | 25.0% |
| ! | AGTGTATATTTCAACATAAG+AGG | - | chr3.4:94958461-94958480 | MS.gene40321:intron | 25.0% |
| ! | CCTCCTTTAATAAGTAAATA+AGG | + | chr3.4:94958379-94958398 | None:intergenic | 25.0% |
| ! | GTGTATATTTCAACATAAGA+GGG | - | chr3.4:94958462-94958481 | MS.gene40321:intron | 25.0% |
| ! | GTGTTTATGCTAGTATATAA+AGG | + | chr3.4:94956522-94956541 | None:intergenic | 25.0% |
| ! | TAATTAATCTAGCATTTCCT+TGG | - | chr3.4:94959794-94959813 | MS.gene40321:intron | 25.0% |
| ! | TATTTACTTATTAAAGGAGG+GGG | - | chr3.4:94958379-94958398 | MS.gene40321:intron | 25.0% |
| ! | TCAAAGAAAAATAGCATTGT+AGG | - | chr3.4:94958024-94958043 | MS.gene40321:intron | 25.0% |
| ! | TGAATTACAATTGAGCATTT+AGG | - | chr3.4:94957682-94957701 | MS.gene40321:intron | 25.0% |
| ! | TGTAATTCAAGCATCTTATA+GGG | - | chr3.4:94958403-94958422 | MS.gene40321:intron | 25.0% |
| ! | TGTAATTTAAGCATCTTTGA+GGG | + | chr3.4:94957802-94957821 | None:intergenic | 25.0% |
| ! | TGTATATTTCAACATAAGAG+GGG | - | chr3.4:94958463-94958482 | MS.gene40321:intron | 25.0% |
| ! | TGTTGAATATACTTTCAAGA+AGG | + | chr3.4:94959708-94959727 | None:intergenic | 25.0% |
| ! | TTATTAAAGCCGATTAAGTA+TGG | - | chr3.4:94958177-94958196 | MS.gene40321:intron | 25.0% |
| ! | TTCAATATCTGTTCATATTG+TGG | + | chr3.4:94958729-94958748 | None:intergenic | 25.0% |
| ! | TTGTAATTCAAGCATCTTAT+AGG | - | chr3.4:94958402-94958421 | MS.gene40321:intron | 25.0% |
| !! | AACATAATTAAGACCCTTTT+TGG | + | chr3.4:94956983-94957002 | None:intergenic | 25.0% |
| !! | ATGATGTTTTCATTTATTGC+AGG | - | chr3.4:94960332-94960351 | MS.gene40321:CDS | 25.0% |
| !! | CCTTATTTACTTATTAAAGG+AGG | - | chr3.4:94958376-94958395 | MS.gene40321:intron | 25.0% |
| !! | GGATTGATTTATTTGAGTTT+GGG | - | chr3.4:94956260-94956279 | MS.gene40321:intron | 25.0% |
| !! | TATCTATTTTATCAGAGGTA+GGG | - | chr3.4:94956230-94956249 | MS.gene40321:intron | 25.0% |
| !! | TGGATTGATTTATTTGAGTT+TGG | - | chr3.4:94956259-94956278 | MS.gene40321:intron | 25.0% |
| !! | TTATCTATTTTATCAGAGGT+AGG | - | chr3.4:94956229-94956248 | MS.gene40321:intron | 25.0% |
| !! | TTTTTGTTCAGTAGAACTTT+TGG | - | chr3.4:94956299-94956318 | MS.gene40321:CDS | 25.0% |
| !!! | AAATTTTACTTTTCAAGGGA+GGG | - | chr3.4:94958437-94958456 | MS.gene40321:intron | 25.0% |
| !!! | AGACAAAAACATTTGACTTT+TGG | - | chr3.4:94960492-94960511 | MS.gene40321:CDS | 25.0% |
| !!! | ATTGTTTTTGCAAATGCTAT+AGG | + | chr3.4:94956400-94956419 | None:intergenic | 25.0% |
| !!! | CTTGTTACCTGATTTTTTAT+GGG | - | chr3.4:94959372-94959391 | MS.gene40321:intron | 25.0% |
| !!! | TAAATTTTACTTTTCAAGGG+AGG | - | chr3.4:94958436-94958455 | MS.gene40321:intron | 25.0% |
| !!! | TATGTTAATGGCTTTATTTG+AGG | - | chr3.4:94959489-94959508 | MS.gene40321:intron | 25.0% |
| !!! | TATTTTTCTTTGAAGTGTGT+TGG | + | chr3.4:94958017-94958036 | None:intergenic | 25.0% |
| !!! | TTGTTACCTGATTTTTTATG+GGG | - | chr3.4:94959373-94959392 | MS.gene40321:intron | 25.0% |
| AAGTAGATGAACCAACTTTA+AGG | - | chr3.4:94959759-94959778 | MS.gene40321:intron | 30.0% | |
| AATATACTTTCAAGAAGGTC+CGG | + | chr3.4:94959703-94959722 | None:intergenic | 30.0% | |
| ACAAAATACCTGTGTTTATG+TGG | + | chr3.4:94960091-94960110 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCCAT+TGG | - | chr3.4:94956570-94956589 | MS.gene40321:CDS | 30.0% | |
| AGTAGTTGAGTATCATTTGA+AGG | - | chr3.4:94957723-94957742 | MS.gene40321:intron | 30.0% | |
| ATTTCTATCTCTGTTCTTTC+TGG | - | chr3.4:94957646-94957665 | MS.gene40321:intron | 30.0% | |
| CTTCCAGATTGAAATAAATC+TGG | - | chr3.4:94959190-94959209 | MS.gene40321:CDS | 30.0% | |
| CTTGTACATCTTTAAGTACA+AGG | - | chr3.4:94958686-94958705 | MS.gene40321:intron | 30.0% | |
| GTAATTTAAGCATCTTTGAG+GGG | + | chr3.4:94957801-94957820 | None:intergenic | 30.0% | |
| GTGTAATTTAAGCATCTTTG+AGG | + | chr3.4:94957803-94957822 | None:intergenic | 30.0% | |
| TATGTACCCCATAAAAAATC+AGG | + | chr3.4:94959382-94959401 | None:intergenic | 30.0% | |
| TATTAATTGTCCTAGCTTGA+AGG | - | chr3.4:94960239-94960258 | MS.gene40321:CDS | 30.0% | |
| TCAAATAAGTCCATTCAAAC+AGG | + | chr3.4:94956560-94956579 | None:intergenic | 30.0% | |
| TCTTCAAAGAGAAAAGGATT+AGG | + | chr3.4:94960020-94960039 | None:intergenic | 30.0% | |
| TGAATCTCTTCAAAGAGAAA+AGG | + | chr3.4:94960026-94960045 | None:intergenic | 30.0% | |
| TTAAAGTTATTTGTTTCCCC+AGG | - | chr3.4:94959610-94959629 | MS.gene40321:intron | 30.0% | |
| TTGGAAAACTTGTGGAAATA+AGG | + | chr3.4:94956855-94956874 | None:intergenic | 30.0% | |
| TTTCTATCTCTGTTCTTTCT+GGG | - | chr3.4:94957647-94957666 | MS.gene40321:intron | 30.0% | |
| ! | AGCAATGTCTTGAAAGTTTT+GGG | - | chr3.4:94957155-94957174 | MS.gene40321:intron | 30.0% |
| ! | AGTCTAAGATAAGATATACC+TGG | + | chr3.4:94958989-94959008 | None:intergenic | 30.0% |
| ! | TAGCAATGTCTTGAAAGTTT+TGG | - | chr3.4:94957154-94957173 | MS.gene40321:intron | 30.0% |
| ! | TAGTATATAAAGGGCTTGTT+TGG | + | chr3.4:94956512-94956531 | None:intergenic | 30.0% |
| ! | TATATATTAAAAGGGGGCAT+TGG | + | chr3.4:94959584-94959603 | None:intergenic | 30.0% |
| ! | TTCTCTTTATGCAGCTTTTT+GGG | + | chr3.4:94959238-94959257 | None:intergenic | 30.0% |
| ! | TTTCTCTTTATGCAGCTTTT+TGG | + | chr3.4:94959239-94959258 | None:intergenic | 30.0% |
| !! | AATTTTACTTTTCAAGGGAG+GGG | - | chr3.4:94958438-94958457 | MS.gene40321:intron | 30.0% |
| !! | ATGTTTTGAATAAAAGGGGA+GGG | + | chr3.4:94957858-94957877 | None:intergenic | 30.0% |
| !! | GAACTTTTGGAAACAACTTA+TGG | - | chr3.4:94956312-94956331 | MS.gene40321:CDS | 30.0% |
| !! | TATGTTTTGAATAAAAGGGG+AGG | + | chr3.4:94957859-94957878 | None:intergenic | 30.0% |
| !!! | ATATTTTAACATAAGAGGGG+AGG | + | chr3.4:94957829-94957848 | None:intergenic | 30.0% |
| !!! | GCTTGTTACCTGATTTTTTA+TGG | - | chr3.4:94959371-94959390 | MS.gene40321:intron | 30.0% |
| !!! | TATTTTAACATAAGAGGGGA+GGG | + | chr3.4:94957828-94957847 | None:intergenic | 30.0% |
| !!! | TTATTTTAACATAAGAGGGG+AGG | + | chr3.4:94957932-94957951 | None:intergenic | 30.0% |
| AAAACCATAGTGGTAAATGG+TGG | + | chr3.4:94957312-94957331 | None:intergenic | 35.0% | |
| AACGATGGCTATGATTACAA+TGG | - | chr3.4:94957128-94957147 | MS.gene40321:intron | 35.0% | |
| AAGAAGTTTCGTACATTTGG+TGG | + | chr3.4:94955780-94955799 | None:intergenic | 35.0% | |
| AAGCAACAACAGTTGTTATC+AGG | - | chr3.4:94959674-94959693 | MS.gene40321:intron | 35.0% | |
| AAGTCTTGCAACCTTAAAGT+TGG | + | chr3.4:94959773-94959792 | None:intergenic | 35.0% | |
| AATGTGGCATCCAATAACAA+TGG | + | chr3.4:94957288-94957307 | None:intergenic | 35.0% | |
| AATTATTCAGATACTCGAGC+AGG | - | chr3.4:94957076-94957095 | MS.gene40321:intron | 35.0% | |
| ACCAATATTATTTGAGCCTG+TGG | + | chr3.4:94957563-94957582 | None:intergenic | 35.0% | |
| ACCTGGTTGTAATTTACTAG+AGG | + | chr3.4:94958972-94958991 | None:intergenic | 35.0% | |
| AGTAATATCCAATGCTGATG+TGG | - | chr3.4:94959951-94959970 | MS.gene40321:intron | 35.0% | |
| AGTGTATTGTTTATGTCCAC+AGG | - | chr3.4:94957544-94957563 | MS.gene40321:CDS | 35.0% | |
| AGTTTAAACCTGTGTCTTGA+TGG | - | chr3.4:94960113-94960132 | MS.gene40321:intron | 35.0% | |
| ATAAACACTTACGAGACTCT+GGG | - | chr3.4:94956534-94956553 | MS.gene40321:CDS | 35.0% | |
| ATACACTGACAGAATAGAGA+CGG | + | chr3.4:94957531-94957550 | None:intergenic | 35.0% | |
| ATAGAAATCCACATCAGCAT+TGG | + | chr3.4:94959962-94959981 | None:intergenic | 35.0% | |
| ATATTTCAACATAAGAGGGG+AGG | - | chr3.4:94958466-94958485 | MS.gene40321:intron | 35.0% | |
| ATCTAAACAATGACAGCTGA+TGG | + | chr3.4:94959544-94959563 | None:intergenic | 35.0% | |
| ATTACCACCATTTACCACTA+TGG | - | chr3.4:94957305-94957324 | MS.gene40321:CDS | 35.0% | |
| ATTCAAGCATCTTATAGGGA+AGG | - | chr3.4:94958407-94958426 | MS.gene40321:intron | 35.0% | |
| CAGTTATGGAACACATCATA+AGG | + | chr3.4:94956826-94956845 | None:intergenic | 35.0% | |
| CCTATTGATATTAGTCAGTC+AGG | - | chr3.4:94957254-94957273 | MS.gene40321:intron | 35.0% | |
| CCTGACTGACTAATATCAAT+AGG | + | chr3.4:94957257-94957276 | None:intergenic | 35.0% | |
| CGTAACTAAATGCAAGCAAT+GGG | + | chr3.4:94960520-94960539 | None:intergenic | 35.0% | |
| CTAAATAATATGGACCGCAA+AGG | + | chr3.4:94960443-94960462 | None:intergenic | 35.0% | |
| GCTGTTGTCATAAACTATCT+TGG | + | chr3.4:94956690-94956709 | None:intergenic | 35.0% | |
| GGAAAGAAGTTTCGTACATT+TGG | + | chr3.4:94955783-94955802 | None:intergenic | 35.0% | |
| GGTGTTTACACCATTGTTAT+TGG | - | chr3.4:94957275-94957294 | MS.gene40321:intron | 35.0% | |
| GTAATTCAAGCTTCTCTCAA+GGG | + | chr3.4:94957904-94957923 | None:intergenic | 35.0% | |
| TAAGATTGGCAAAACCATAG+TGG | + | chr3.4:94957322-94957341 | None:intergenic | 35.0% | |
| TAATTACTGCAGTCTCTTTC+AGG | - | chr3.4:94955972-94955991 | MS.gene40321:intron | 35.0% | |
| TATTTCAACATAAGAGGGGA+GGG | - | chr3.4:94958467-94958486 | MS.gene40321:intron | 35.0% | |
| TCCACAGGCTCAAATAATAT+TGG | - | chr3.4:94957559-94957578 | MS.gene40321:CDS | 35.0% | |
| TCGTAACTAAATGCAAGCAA+TGG | + | chr3.4:94960521-94960540 | None:intergenic | 35.0% | |
| TCTAAACAATGACAGCTGAT+GGG | + | chr3.4:94959543-94959562 | None:intergenic | 35.0% | |
| TGCAAAACTTGCAAGTTACA+TGG | - | chr3.4:94959736-94959755 | MS.gene40321:intron | 35.0% | |
| TGTAATTCAAGCTTCTCTCA+AGG | + | chr3.4:94957905-94957924 | None:intergenic | 35.0% | |
| TGTAGAAAAGGCTACATTTC+AGG | + | chr3.4:94958629-94958648 | None:intergenic | 35.0% | |
| TGTAGTTCAAGCATCTTTGA+GGG | - | chr3.4:94958493-94958512 | MS.gene40321:intron | 35.0% | |
| TTATACTTAGGCGCTTATCA+TGG | - | chr3.4:94956766-94956785 | MS.gene40321:intron | 35.0% | |
| TTCAAGCATCTTATAGGGAA+GGG | - | chr3.4:94958408-94958427 | MS.gene40321:intron | 35.0% | |
| TTCTATCTCTGTTCTTTCTG+GGG | - | chr3.4:94957648-94957667 | MS.gene40321:intron | 35.0% | |
| TTGAGTATCATTTGAAGGTG+TGG | - | chr3.4:94957728-94957747 | MS.gene40321:intron | 35.0% | |
| TTTGCCTTGTATCACTTGAA+TGG | - | chr3.4:94957505-94957524 | MS.gene40321:CDS | 35.0% | |
| ! | AAACTATCTTGGAGTGCTTA+TGG | + | chr3.4:94956679-94956698 | None:intergenic | 35.0% |
| ! | AATGCAACGATATGATGATG+AGG | - | chr3.4:94958869-94958888 | MS.gene40321:intron | 35.0% |
| ! | ATATCCCAAAGCCATTGATT+CGG | + | chr3.4:94956030-94956049 | None:intergenic | 35.0% |
| ! | GCAATGTCTTGAAAGTTTTG+GGG | - | chr3.4:94957156-94957175 | MS.gene40321:intron | 35.0% |
| ! | TATTTGAGTTTGGGTCTGTT+TGG | - | chr3.4:94956269-94956288 | MS.gene40321:intron | 35.0% |
| ! | TCTTAGGCTTGGAATGTTTT+TGG | - | chr3.4:94957014-94957033 | MS.gene40321:intron | 35.0% |
| !! | ATGTTGTCTTTTGCTGTCTT+AGG | - | chr3.4:94956998-94957017 | MS.gene40321:intron | 35.0% |
| !! | ATTTTAACATAAGAGGGGAG+GGG | + | chr3.4:94957827-94957846 | None:intergenic | 35.0% |
| !! | GTAACTTGCAAGTTTTGCAA+GGG | + | chr3.4:94959735-94959754 | None:intergenic | 35.0% |
| !! | GTTGTTGCTTTGCTTCATAA+AGG | + | chr3.4:94959664-94959683 | None:intergenic | 35.0% |
| !! | GTTGTTTTCATGAGTCAAGT+TGG | + | chr3.4:94956874-94956893 | None:intergenic | 35.0% |
| !! | TGCATTTCCATTTTGATGCT+TGG | - | chr3.4:94959871-94959890 | MS.gene40321:intron | 35.0% |
| !! | TGTAACTTGCAAGTTTTGCA+AGG | + | chr3.4:94959736-94959755 | None:intergenic | 35.0% |
| !!! | AGTTTTGGGGTATTTCAGTA+TGG | - | chr3.4:94957169-94957188 | MS.gene40321:intron | 35.0% |
| AACAGTTGTTATCAGGTCTC+CGG | - | chr3.4:94959681-94959700 | MS.gene40321:intron | 40.0% | |
| ACCAAGAAGCGAGTTAACAA+TGG | + | chr3.4:94960209-94960228 | None:intergenic | 40.0% | |
| ACCATTGTTAACTCGCTTCT+TGG | - | chr3.4:94960205-94960224 | MS.gene40321:CDS | 40.0% | |
| ACTAGAGGCTCTTCAAAACT+GGG | + | chr3.4:94958957-94958976 | None:intergenic | 40.0% | |
| AGAGAAAAGGATTAGGCAAG+AGG | + | chr3.4:94960013-94960032 | None:intergenic | 40.0% | |
| AGGAAGCTGTTCATCCAAAA+AGG | - | chr3.4:94956966-94956985 | MS.gene40321:intron | 40.0% | |
| ATATGCAGCTTCCGAATCAA+TGG | - | chr3.4:94956016-94956035 | MS.gene40321:intron | 40.0% | |
| ATCTTGCACATATCCACACA+TGG | - | chr3.4:94957617-94957636 | MS.gene40321:intron | 40.0% | |
| ATGGTGTGTCCTTGAAGAAA+CGG | + | chr3.4:94955819-94955838 | None:intergenic | 40.0% | |
| ATTTCAACATAAGAGGGGAG+GGG | - | chr3.4:94958468-94958487 | MS.gene40321:intron | 40.0% | |
| CACATATCCACACATGGAAT+GGG | - | chr3.4:94957623-94957642 | MS.gene40321:intron | 40.0% | |
| CACTCACTCAAAATGCTCTA+TGG | + | chr3.4:94959035-94959054 | None:intergenic | 40.0% | |
| CATAAACACTTACGAGACTC+TGG | - | chr3.4:94956533-94956552 | MS.gene40321:CDS | 40.0% | |
| CATATTGTGGAGACTTCTGA+TGG | + | chr3.4:94958716-94958735 | None:intergenic | 40.0% | |
| CATCCACGTATCTGTAGAAA+AGG | + | chr3.4:94958641-94958660 | None:intergenic | 40.0% | |
| CATTCTTCTCTCTGATGTGA+CGG | + | chr3.4:94955747-94955766 | None:intergenic | 40.0% | |
| CTCTGAGCCTTCTATGTTAA+TGG | - | chr3.4:94959477-94959496 | MS.gene40321:intron | 40.0% | |
| CTGAAGGGGTAATAAACTTG+GGG | + | chr3.4:94958932-94958951 | None:intergenic | 40.0% | |
| CTTGAAGAAACGGTCAGATA+GGG | + | chr3.4:94955809-94955828 | None:intergenic | 40.0% | |
| GAAGTAATCTCCATACCGTT+TGG | + | chr3.4:94960388-94960407 | None:intergenic | 40.0% | |
| GATGGCTATGATTACAATGG+TGG | - | chr3.4:94957131-94957150 | MS.gene40321:intron | 40.0% | |
| GCAAGCAAGCAATTGATTAG+TGG | + | chr3.4:94957365-94957384 | None:intergenic | 40.0% | |
| GCCTCTAGTAAATTACAACC+AGG | - | chr3.4:94958968-94958987 | MS.gene40321:CDS | 40.0% | |
| GCTGAAGGGGTAATAAACTT+GGG | + | chr3.4:94958933-94958952 | None:intergenic | 40.0% | |
| GGAAGCTGTTCATCCAAAAA+GGG | - | chr3.4:94956967-94956986 | MS.gene40321:intron | 40.0% | |
| GGCAAAACCATAGTGGTAAA+TGG | + | chr3.4:94957315-94957334 | None:intergenic | 40.0% | |
| GTAGTTCAAGCATCTTTGAG+GGG | - | chr3.4:94958494-94958513 | MS.gene40321:intron | 40.0% | |
| GTCACAAGTGTTTATGCCAA+TGG | + | chr3.4:94956589-94956608 | None:intergenic | 40.0% | |
| GTGTAGTTCAAGCATCTTTG+AGG | - | chr3.4:94958492-94958511 | MS.gene40321:intron | 40.0% | |
| TAATCTCCATACCGTTTGGA+AGG | + | chr3.4:94960384-94960403 | None:intergenic | 40.0% | |
| TACTAGAGGCTCTTCAAAAC+TGG | + | chr3.4:94958958-94958977 | None:intergenic | 40.0% | |
| TACTGTTACCATCAAGACAC+AGG | + | chr3.4:94960124-94960143 | None:intergenic | 40.0% | |
| TAGAAATCCCATTCCATGTG+TGG | + | chr3.4:94957633-94957652 | None:intergenic | 40.0% | |
| TATGTGTGCTTTCCCTTCAT+GGG | - | chr3.4:94958580-94958599 | MS.gene40321:intron | 40.0% | |
| TCAAGCATCTTATAGGGAAG+GGG | - | chr3.4:94958409-94958428 | MS.gene40321:intron | 40.0% | |
| TCTAAACCTTCCAAACGGTA+TGG | - | chr3.4:94960375-94960394 | MS.gene40321:CDS | 40.0% | |
| TCTCTTGAAACAGTTCGATC+AGG | - | chr3.4:94956131-94956150 | MS.gene40321:intron | 40.0% | |
| TGAAAAGGTGATCAACGAGA+TGG | - | chr3.4:94960586-94960605 | MS.gene40321:CDS | 40.0% | |
| TGAACAAATGTATGCGTTGC+TGG | - | chr3.4:94958755-94958774 | MS.gene40321:intron | 40.0% | |
| TGGAGTCTAAACCTTCCAAA+CGG | - | chr3.4:94960370-94960389 | MS.gene40321:CDS | 40.0% | |
| TTAGACTCCATCTGTGATCT+TGG | - | chr3.4:94959002-94959021 | MS.gene40321:CDS | 40.0% | |
| TTATGTGTGCTTTCCCTTCA+TGG | - | chr3.4:94958579-94958598 | MS.gene40321:intron | 40.0% | |
| TTCATCAACAAGCCTGCTTT+GGG | + | chr3.4:94958802-94958821 | None:intergenic | 40.0% | |
| TTGAGAGAACACATGAAGAC+AGG | - | chr3.4:94956614-94956633 | MS.gene40321:CDS | 40.0% | |
| TTTCATCAACAAGCCTGCTT+TGG | + | chr3.4:94958803-94958822 | None:intergenic | 40.0% | |
| ! | AGTGGTAAATGGTGGTAATG+TGG | + | chr3.4:94957304-94957323 | None:intergenic | 40.0% |
| ! | ATTTAAGCATCTTTGAGGGG+AGG | + | chr3.4:94957798-94957817 | None:intergenic | 40.0% |
| ! | TAGCCTTTTCTACAGATACG+TGG | - | chr3.4:94958635-94958654 | MS.gene40321:intron | 40.0% |
| ! | TATCAGAGGTAGGGTTTGTT+TGG | - | chr3.4:94956239-94956258 | MS.gene40321:intron | 40.0% |
| ! | TTGGGGTATTTCAGTATGGT+TGG | - | chr3.4:94957173-94957192 | MS.gene40321:intron | 40.0% |
| ! | TTTAAGCATCTTTGAGGGGA+GGG | + | chr3.4:94957797-94957816 | None:intergenic | 40.0% |
| !! | ATTAAAAGGGGGCATTGGAA+AGG | + | chr3.4:94959579-94959598 | None:intergenic | 40.0% |
| !! | GAATCAATGGCTTTGGGATA+TGG | - | chr3.4:94956029-94956048 | MS.gene40321:intron | 40.0% |
| !! | GAGTCAAGTTGGAAAACTTG+TGG | + | chr3.4:94956863-94956882 | None:intergenic | 40.0% |
| !! | GTCTTGTTTGCAGCTTGAAA+AGG | - | chr3.4:94960571-94960590 | MS.gene40321:CDS | 40.0% |
| !! | TGAACAACGAAGGTTTTGAC+TGG | + | chr3.4:94955718-94955737 | None:intergenic | 40.0% |
| !! | TTATGCAGCTTTTTGGGAGA+TGG | + | chr3.4:94959232-94959251 | None:intergenic | 40.0% |
| !! | TTTCCATTTTGATGCTTGGC+AGG | - | chr3.4:94959875-94959894 | MS.gene40321:intron | 40.0% |
| !!! | AACGAAGGTTTTGACTGGAT+CGG | + | chr3.4:94955713-94955732 | None:intergenic | 40.0% |
| !!! | CTGTTCTTTCTGGGGTTTTT+AGG | - | chr3.4:94957656-94957675 | MS.gene40321:intron | 40.0% |
| ACGGCCATTCAAGTGATACA+AGG | + | chr3.4:94957512-94957531 | None:intergenic | 45.0% | |
| AGAAACGGTCAGATAGGGTT+TGG | + | chr3.4:94955804-94955823 | None:intergenic | 45.0% | |
| AGAAGGCTCAGAGTCAATAG+AGG | + | chr3.4:94959470-94959489 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAACA+AGG | + | chr3.4:94959122-94959141 | None:intergenic | 45.0% | |
| AGCTTCCGAATCAATGGCTT+TGG | - | chr3.4:94956022-94956041 | MS.gene40321:intron | 45.0% | |
| AGTCCTGCCAAGCATCAAAA+TGG | + | chr3.4:94959881-94959900 | None:intergenic | 45.0% | |
| ATTCAAGCTTCTCTCAAGGG+AGG | + | chr3.4:94957901-94957920 | None:intergenic | 45.0% | |
| CAAGCTGCAAACAAGACAGA+CGG | + | chr3.4:94960568-94960587 | None:intergenic | 45.0% | |
| CCTATCTGACCGTTTCTTCA+AGG | - | chr3.4:94955807-94955826 | MS.gene40321:intron | 45.0% | |
| CCTTGAAGAAACGGTCAGAT+AGG | + | chr3.4:94955810-94955829 | None:intergenic | 45.0% | |
| CGAGATGGACAGTATAAAGC+TGG | - | chr3.4:94960601-94960620 | MS.gene40321:CDS | 45.0% | |
| CGCTGAAGGGGTAATAAACT+TGG | + | chr3.4:94958934-94958953 | None:intergenic | 45.0% | |
| CTCTTGGGTGATTATCACAC+TGG | - | chr3.4:94957215-94957234 | MS.gene40321:intron | 45.0% | |
| CTGAGGGTTCATTGTCTCTT+GGG | - | chr3.4:94957200-94957219 | MS.gene40321:intron | 45.0% | |
| GAGCAATTCACTGCAAACGA+TGG | - | chr3.4:94957113-94957132 | MS.gene40321:intron | 45.0% | |
| GCACATATCCACACATGGAA+TGG | - | chr3.4:94957622-94957641 | MS.gene40321:intron | 45.0% | |
| GCAGGACACAATTCATGTTG+TGG | - | chr3.4:94960350-94960369 | MS.gene40321:CDS | 45.0% | |
| GCTTCCGAATCAATGGCTTT+GGG | - | chr3.4:94956023-94956042 | MS.gene40321:intron | 45.0% | |
| GGTAGAGAAGACAGAAGACA+TGG | + | chr3.4:94955882-94955901 | None:intergenic | 45.0% | |
| GTTTCTTCAAGGACACACCA+TGG | - | chr3.4:94955818-94955837 | MS.gene40321:intron | 45.0% | |
| TCATCAACAAGCCTGCTTTG+GGG | + | chr3.4:94958801-94958820 | None:intergenic | 45.0% | |
| TCCAGAACCAAGATCACAGA+TGG | + | chr3.4:94959012-94959031 | None:intergenic | 45.0% | |
| TCCATCTGTGATCTTGGTTC+TGG | - | chr3.4:94959008-94959027 | MS.gene40321:CDS | 45.0% | |
| TCTCAGTTGCGAGAGAAGTA+TGG | - | chr3.4:94958831-94958850 | MS.gene40321:intron | 45.0% | |
| TGAAGTCTATACGCATCCTG+GGG | + | chr3.4:94959629-94959648 | None:intergenic | 45.0% | |
| TGGAGATTACTTCTTGCGTC+AGG | - | chr3.4:94960395-94960414 | MS.gene40321:CDS | 45.0% | |
| TGTTAACTCGCTTCTTGGTC+AGG | - | chr3.4:94960210-94960229 | MS.gene40321:CDS | 45.0% | |
| TTACTGCAGTCTCTTTCAGG+TGG | - | chr3.4:94955975-94955994 | MS.gene40321:intron | 45.0% | |
| TTCAAGCTTCTCTCAAGGGA+GGG | + | chr3.4:94957900-94957919 | None:intergenic | 45.0% | |
| TTTCTGGGCCACATAAACAC+AGG | - | chr3.4:94960080-94960099 | MS.gene40321:intron | 45.0% | |
| ! | CTCTTTCAGGTGGTTCTTCA+TGG | - | chr3.4:94955985-94956004 | MS.gene40321:intron | 45.0% |
| ! | CTTCTTGCGTCAGGTTGTTA+AGG | - | chr3.4:94960404-94960423 | MS.gene40321:CDS | 45.0% |
| ! | TGCGTCAGGTTGTTAAGGTA+TGG | - | chr3.4:94960409-94960428 | MS.gene40321:CDS | 45.0% |
| ! | TTAAGCATCTTTGAGGGGAG+GGG | + | chr3.4:94957796-94957815 | None:intergenic | 45.0% |
| ! | TTCAAGCATCTTTGAGGGGA+GGG | - | chr3.4:94958498-94958517 | MS.gene40321:intron | 45.0% |
| !! | ACTCATGCTGTTGATAGTGC+TGG | - | chr3.4:94959925-94959944 | MS.gene40321:intron | 45.0% |
| !! | CAGTATGGTTGGTTTGCTGA+GGG | - | chr3.4:94957184-94957203 | MS.gene40321:intron | 45.0% |
| !! | GTCTTTTGCTGTCTTAGGCT+TGG | - | chr3.4:94957003-94957022 | MS.gene40321:intron | 45.0% |
| !! | TCAGTATGGTTGGTTTGCTG+AGG | - | chr3.4:94957183-94957202 | MS.gene40321:intron | 45.0% |
| !! | TCGTCAGAGAATCGATTCGT+GGG | - | chr3.4:94955948-94955967 | MS.gene40321:intron | 45.0% |
| !! | TTCGTCAGAGAATCGATTCG+TGG | - | chr3.4:94955947-94955966 | MS.gene40321:intron | 45.0% |
| !!! | ACGAAGGTTTTGACTGGATC+GGG | + | chr3.4:94955712-94955731 | None:intergenic | 45.0% |
| !! | AAGTAATTTATATATTAAAA+GGG | + | chr3.4:94959592-94959611 | None:intergenic | 5.0% |
| !! | TAAGTAATTTATATATTAAA+AGG | + | chr3.4:94959593-94959612 | None:intergenic | 5.0% |
| !! | TTGTTTATTAAATATATATT+TGG | - | chr3.4:94959833-94959852 | MS.gene40321:intron | 5.0% |
| !!! | AAGAATTTATATTTTTTAAA+TGG | - | chr3.4:94958290-94958309 | MS.gene40321:intron | 5.0% |
| ACGGTAGAGGTGAACAACGA+AGG | + | chr3.4:94955728-94955747 | None:intergenic | 50.0% | |
| ACTGGATCGGGAACGAAGTT+GGG | + | chr3.4:94955700-94955719 | None:intergenic | 50.0% | |
| AGACTCTGGGCCTGTTTGAA+TGG | - | chr3.4:94956547-94956566 | MS.gene40321:CDS | 50.0% | |
| ATACTCGAGCAGGAGAAGGA+AGG | - | chr3.4:94957086-94957105 | MS.gene40321:intron | 50.0% | |
| CATCAACAAGCCTGCTTTGG+GGG | + | chr3.4:94958800-94958819 | None:intergenic | 50.0% | |
| CTAGCTTGAAGGCGAGAATC+AGG | - | chr3.4:94960250-94960269 | MS.gene40321:CDS | 50.0% | |
| CTGATTCTCGCCTTCAAGCT+AGG | + | chr3.4:94960252-94960271 | None:intergenic | 50.0% | |
| GAAGGCGAGAATCAGGCTTT+AGG | - | chr3.4:94960257-94960276 | MS.gene40321:CDS | 50.0% | |
| GCTGAGGGTTCATTGTCTCT+TGG | - | chr3.4:94957199-94957218 | MS.gene40321:intron | 50.0% | |
| GTATGGTTGCGTCTCCTTTG+CGG | - | chr3.4:94960426-94960445 | MS.gene40321:CDS | 50.0% | |
| GTATTGAGCGACAGCGTCTA+CGG | + | chr3.4:94955848-94955867 | None:intergenic | 50.0% | |
| GTCTTCTCTACCGTGAGATG+TGG | - | chr3.4:94955890-94955909 | MS.gene40321:CDS | 50.0% | |
| TACTCGAGCAGGAGAAGGAA+GGG | - | chr3.4:94957087-94957106 | MS.gene40321:intron | 50.0% | |
| TAGGAGTGAGACGAGCATAG+AGG | + | chr3.4:94955924-94955943 | None:intergenic | 50.0% | |
| TCAAGCTTCTCTCAAGGGAG+GGG | + | chr3.4:94957899-94957918 | None:intergenic | 50.0% | |
| TCAGATACTCGAGCAGGAGA+AGG | - | chr3.4:94957082-94957101 | MS.gene40321:intron | 50.0% | |
| TCGATTCTCTGACGAAGCGT+AGG | + | chr3.4:94955943-94955962 | None:intergenic | 50.0% | |
| TCTCTCTGATGTGACGGTAG+AGG | + | chr3.4:94955741-94955760 | None:intergenic | 50.0% | |
| TGACCTGCGGAGCATAAGAT+TGG | + | chr3.4:94957336-94957355 | None:intergenic | 50.0% | |
| TTAGTGGAAGTCGTGACCTG+CGG | + | chr3.4:94957349-94957368 | None:intergenic | 50.0% | |
| TTGCCAATCTTATGCTCCGC+AGG | - | chr3.4:94957330-94957349 | MS.gene40321:CDS | 50.0% | |
| ! | GTTCAAGCATCTTTGAGGGG+AGG | - | chr3.4:94958497-94958516 | MS.gene40321:intron | 50.0% |
| ! | TCAAGCATCTTTGAGGGGAG+GGG | - | chr3.4:94958499-94958518 | MS.gene40321:intron | 50.0% |
| ! | TCACACTGGTCTCAAGTGCT+TGG | - | chr3.4:94957229-94957248 | MS.gene40321:intron | 50.0% |
| !! | CTTCAAAACTGGGCGCTGAA+GGG | + | chr3.4:94958947-94958966 | None:intergenic | 50.0% |
| !! | GCTTTTTGGGAGATGGAGCT+AGG | + | chr3.4:94959225-94959244 | None:intergenic | 50.0% |
| !! | TCTTCAAAACTGGGCGCTGA+AGG | + | chr3.4:94958948-94958967 | None:intergenic | 50.0% |
| !! | TTCAAAACTGGGCGCTGAAG+GGG | + | chr3.4:94958946-94958965 | None:intergenic | 50.0% |
| CGAAGTTGGGATCGTAGCCT+AGG | + | chr3.4:94955687-94955706 | None:intergenic | 55.0% | |
| CGTAGCCTAGGTCTTGAGCT+TGG | + | chr3.4:94955675-94955694 | None:intergenic | 55.0% | |
| CGTCTCCAAGCTCAAGACCT+AGG | - | chr3.4:94955667-94955686 | MS.gene40321:CDS | 55.0% | |
| GACTGGATCGGGAACGAAGT+TGG | + | chr3.4:94955701-94955720 | None:intergenic | 55.0% | |
| GAGTGAGACGAGCATAGAGG+TGG | + | chr3.4:94955921-94955940 | None:intergenic | 55.0% | |
| GGTGGCGAAACCACATCTCA+CGG | + | chr3.4:94955903-94955922 | None:intergenic | 55.0% | |
| TGAGCGACAGCGTCTACGGA+GGG | + | chr3.4:94955844-94955863 | None:intergenic | 60.0% | |
| TTGAGCGACAGCGTCTACGG+AGG | + | chr3.4:94955845-94955864 | None:intergenic | 60.0% | |
| ACAGCGTCTACGGAGGGCCA+TGG | + | chr3.4:94955838-94955857 | None:intergenic | 65.0% | |
| TCTCGCTCTGCCCCCAAAGC+AGG | - | chr3.4:94958787-94958806 | MS.gene40321:intron | 65.0% | |
| !! | GCTTTGGGGGCAGAGCGAGA+GGG | + | chr3.4:94958787-94958806 | None:intergenic | 65.0% |
| !! | TGCTTTGGGGGCAGAGCGAG+AGG | + | chr3.4:94958788-94958807 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94955649 | 94960628 | 94955649 | ID=MS.gene40321 |
| chr3.4 | mRNA | 94955649 | 94960628 | 94955649 | ID=MS.gene40321.t1;Parent=MS.gene40321 |
| chr3.4 | exon | 94960125 | 94960628 | 94960125 | ID=MS.gene40321.t1.exon1;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94960125 | 94960628 | 94960125 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| chr3.4 | exon | 94958926 | 94959257 | 94958926 | ID=MS.gene40321.t1.exon2;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94958926 | 94959257 | 94958926 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| chr3.4 | exon | 94957288 | 94957627 | 94957288 | ID=MS.gene40321.t1.exon3;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94957288 | 94957627 | 94957288 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| chr3.4 | exon | 94956497 | 94956645 | 94956497 | ID=MS.gene40321.t1.exon4;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94956497 | 94956645 | 94956497 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| chr3.4 | exon | 94956287 | 94956380 | 94956287 | ID=MS.gene40321.t1.exon5;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94956287 | 94956380 | 94956287 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| chr3.4 | exon | 94955852 | 94955923 | 94955852 | ID=MS.gene40321.t1.exon6;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94955852 | 94955923 | 94955852 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| chr3.4 | exon | 94955649 | 94955693 | 94955649 | ID=MS.gene40321.t1.exon7;Parent=MS.gene40321.t1 |
| chr3.4 | CDS | 94955649 | 94955693 | 94955649 | ID=cds.MS.gene40321.t1;Parent=MS.gene40321.t1 |
| Gene Sequence |
| Protein sequence |
