AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41622


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41622.t1 MTR_3g098290 93.789 644 38 1 1 644 1 642 0.0 1148
MS.gene41622.t1 MTR_8g010170 26.715 277 194 6 157 427 175 448 3.81e-25 110
MS.gene41622.t1 MTR_8g010160 25.806 279 194 7 157 427 175 448 1.31e-22 102
MS.gene41622.t1 MTR_4g095080 23.040 421 270 10 44 427 36 439 4.72e-19 91.3
MS.gene41622.t1 MTR_1g103710 25.568 352 208 10 127 464 106 417 1.27e-16 83.6
MS.gene41622.t1 MTR_8g083500 22.738 409 266 11 26 428 17 381 4.53e-13 72.4
MS.gene41622.t1 MTR_5g094400 22.807 285 194 7 156 435 127 390 3.03e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41622.t1 AT4G00650 38.095 294 139 6 28 318 57 310 2.58e-54 188
MS.gene41622.t1 AT5G48385 26.690 281 191 9 157 427 178 453 7.19e-22 100
MS.gene41622.t1 AT3G22440 26.606 327 197 10 156 470 133 428 6.95e-15 78.2
MS.gene41622.t1 AT4G14900 23.582 335 199 11 156 470 129 426 2.15e-12 70.5

Find 140 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCACCTTCTTCGCGTTTC+TGG -0.032627 3.4:-88227001 MS.gene41622:CDS
GCTACAGTGGAATAATTATT+TGG 0.144942 3.4:+88224349 None:intergenic
GCACAAATTGAATCTGTTTC+AGG 0.159070 3.4:-88224319 MS.gene41622:CDS
GCCATAGGTGGTCCACTTTC+TGG 0.173688 3.4:-88224250 MS.gene41622:CDS
AGCCTTTCTAGCAGGGTTTC+AGG 0.173796 3.4:-88226977 MS.gene41622:intron
ATTGATTTCGGTTTCGATTC+TGG 0.251239 3.4:+88227664 None:intergenic
GGCGCCGGAACCGGCAAAAT+TGG 0.253876 3.4:-88227365 MS.gene41622:CDS
TGCTCAGGGAATGATGAAAA+AGG 0.258464 3.4:-88224981 MS.gene41622:CDS
TAAGGATACAATTCTCAAAT+TGG 0.261873 3.4:-88224626 MS.gene41622:CDS
CGCACCTTCTTCGCGTTTCT+GGG 0.272371 3.4:-88227000 MS.gene41622:CDS
CTTGACTTGGCTTATACCTT+TGG 0.275542 3.4:-88224941 MS.gene41622:CDS
AATCCCGGTGGCACTGAAAA+AGG 0.281228 3.4:-88227386 MS.gene41622:CDS
ACCTCCTCTTCTTCTTCTTC+CGG 0.282624 3.4:+88227577 None:intergenic
GCCTAGGGCTTCGAGTTCTT+TGG 0.284004 3.4:+88227741 None:intergenic
TGCGAGGCAAGCTTCAATTT+TGG 0.288687 3.4:-88227272 MS.gene41622:CDS
TACAAAAGTCTAATGAAGTT+TGG 0.294234 3.4:-88224874 MS.gene41622:CDS
CTTGCGTGCTTTGGGATTCA+TGG 0.299912 3.4:-88227082 MS.gene41622:CDS
ATTCACCGATTTCGAAATAT+TGG 0.300429 3.4:+88227864 None:intergenic
GGCTTCGAGTTCTTTGGTTC+TGG 0.307735 3.4:+88227747 None:intergenic
CATCGGTGAGTTTGTTGTAT+AGG 0.312668 3.4:+88227300 None:intergenic
TTCAACGTCCAAGAGAAAAT+TGG 0.328833 3.4:-88224563 MS.gene41622:CDS
ATCTGAAACGCCGTCGCTTA+AGG 0.331700 3.4:-88227413 MS.gene41622:CDS
TTGCAAAACTTCTTCCTGAT+TGG 0.331985 3.4:-88224654 MS.gene41622:CDS
TCTTCCTGATTGGAAACTTA+AGG 0.339306 3.4:-88224644 MS.gene41622:CDS
TTGACTTGGCTTATACCTTT+GGG 0.342599 3.4:-88224940 MS.gene41622:CDS
CTTGGAAGGGGAGTGTCAAT+TGG 0.364900 3.4:-88224277 MS.gene41622:CDS
TCGCCATCAGCAATTGATTT+CGG 0.368516 3.4:+88227652 None:intergenic
TGGAACAATGTTACCGTTAT+CGG 0.374770 3.4:+88227693 None:intergenic
TTGCGGCGGTGGTGGTGCCT+AGG 0.376894 3.4:+88227725 None:intergenic
TTGCCAGATCATCACTCTAT+TGG 0.377011 3.4:-88224031 MS.gene41622:CDS
TTGGAAGGGGAGTGTCAATT+GGG 0.377474 3.4:-88224276 MS.gene41622:CDS
ACGTGATGTTCCTAGTTTGC+TGG 0.396679 3.4:-88224834 MS.gene41622:intron
TCCCCTTCCAAGATAACCTT+CGG 0.397061 3.4:+88224288 None:intergenic
TTGCAAAGGCAAAGGATTGC+TGG 0.398329 3.4:-88224442 MS.gene41622:CDS
TCATTACCCGAAGGTTATCT+TGG 0.398870 3.4:-88224295 MS.gene41622:CDS
GCACGAGTAAATCATATGTA+TGG 0.400182 3.4:-88224082 MS.gene41622:CDS
GCAAAGGATTGCTGGTCATA+TGG 0.409083 3.4:-88224434 MS.gene41622:CDS
CTACAGTGGAATAATTATTT+GGG 0.411267 3.4:+88224350 None:intergenic
TTGGAATACTATCTGATGTC+TGG 0.411562 3.4:-88227247 MS.gene41622:CDS
TTTCTGGGAGCCTTTCTAGC+AGG 0.411656 3.4:-88226985 MS.gene41622:CDS
ATATTTATCTGATTTGAAAT+CGG 0.414588 3.4:-88224710 MS.gene41622:CDS
GAAATGAATTCAGTACTGTC+TGG 0.423324 3.4:+88224897 None:intergenic
GCAGAAGCTGCAGATGCAGC+GGG 0.429489 3.4:-88227184 MS.gene41622:CDS
TATAGGCTTTGCTTCCTTGA+AGG 0.429956 3.4:+88227317 None:intergenic
AATTGGAGCGTCGGAGGCTG+TGG 0.434220 3.4:+88227915 None:intergenic
TTCTTTGGTTCTGGTTTCGA+TGG 0.437893 3.4:+88227756 None:intergenic
GAAATCGGTTGTCAACTGTT+TGG 0.439288 3.4:-88224695 MS.gene41622:CDS
GTTGTCCCAACATTATCAAT+TGG 0.451819 3.4:+88224211 None:intergenic
AGAAGGTGCGAGATTTCTCC+AGG 0.452247 3.4:+88227013 None:intergenic
CACAAATTGAATCTGTTTCA+GGG 0.454248 3.4:-88224318 MS.gene41622:CDS
TTGGTTCGTTTGAGCAAACC+TGG 0.457585 3.4:-88227031 MS.gene41622:CDS
CTGCAGATGCAGCGGGTGCA+TGG 0.460899 3.4:-88227177 MS.gene41622:CDS
GTATCCTTAAGTTTCCAATC+AGG 0.461156 3.4:+88224640 None:intergenic
GAATGAGGATATTGCCAACT+TGG 0.462459 3.4:-88227050 MS.gene41622:CDS
CTTTGACAGAATAAAGCAAA+TGG 0.469866 3.4:-88224736 MS.gene41622:intron
TTCTGGGAGCCTTTCTAGCA+GGG 0.472211 3.4:-88226984 MS.gene41622:CDS
CGGCGCCAATATTTCGAAAT+CGG 0.472556 3.4:-88227869 MS.gene41622:CDS
GCAAATGTGGTCACCGATAA+CGG 0.474173 3.4:-88227706 MS.gene41622:CDS
TGCGGCGGTGGTGGTGCCTA+GGG 0.474709 3.4:+88227726 None:intergenic
TTTCTGGAGGGTAGATCCTA+TGG 0.476468 3.4:-88224376 MS.gene41622:CDS
TTGGAACATACCAGCAAACT+AGG 0.480824 3.4:+88224824 None:intergenic
GGTGACCACATTTGCGGCGG+TGG 0.481971 3.4:+88227714 None:intergenic
TGTGGCTATGGCAAGTGAAA+TGG 0.488446 3.4:-88227128 MS.gene41622:CDS
CCCCTTCCAAGATAACCTTC+GGG 0.489106 3.4:+88224289 None:intergenic
GCCAGAAAGTGGACCACCTA+TGG 0.489341 3.4:+88224249 None:intergenic
AAAGATATTCGTGATGTCAC+TGG 0.492624 3.4:-88224601 MS.gene41622:CDS
TATTGGCGCCGGCGTCGTGT+TGG 0.494195 3.4:+88227881 None:intergenic
AGTTGTTGAAGCCCTTGACT+TGG 0.495531 3.4:-88224954 MS.gene41622:CDS
TACCCGAAGGTTATCTTGGA+AGG 0.496100 3.4:-88224291 MS.gene41622:CDS
GGTAGAAGAAGAAGTAGAAG+AGG 0.496378 3.4:-88227557 MS.gene41622:CDS
TACCTGAAACCCTGCTAGAA+AGG 0.500118 3.4:+88226975 None:intergenic
GACCACATTTGCGGCGGTGG+TGG 0.501591 3.4:+88227717 None:intergenic
ACACCAATAGAGTGATGATC+TGG 0.505806 3.4:+88224028 None:intergenic
TGATTTACTCGTGCCGATGA+AGG 0.505880 3.4:+88224091 None:intergenic
TTTGGCCGCAGATATTGCTC+AGG 0.505908 3.4:-88224996 MS.gene41622:intron
ACTGAAGGTGATGCCACATA+AGG 0.506366 3.4:+88224472 None:intergenic
AAATGAATTCAGTACTGTCT+GGG 0.506777 3.4:+88224898 None:intergenic
GGCTCCCAGAAACGCGAAGA+AGG 0.514592 3.4:+88226996 None:intergenic
GTTATCGGTGACCACATTTG+CGG 0.521066 3.4:+88227708 None:intergenic
TCACTCTGATAGCCAGAAAG+TGG 0.522292 3.4:+88224238 None:intergenic
GATGAAGGGGCATTATCTTA+CGG 0.524968 3.4:-88224145 MS.gene41622:CDS
AGGAAGAGACTCGTTGTTGA+AGG 0.526162 3.4:-88227154 MS.gene41622:CDS
GGTTTCGATTCTGGTTCAGA+TGG 0.528247 3.4:+88227673 None:intergenic
ACATCTGCAGAAGGTTATGC+AGG 0.529507 3.4:-88224055 MS.gene41622:CDS
CCCGAAGGTTATCTTGGAAG+GGG 0.529987 3.4:-88224289 MS.gene41622:CDS
AGATTGCATAGTGTAGATGA+AGG 0.531493 3.4:-88224160 MS.gene41622:CDS
TGTTGAAGGTGGTGTGGCTA+TGG 0.532741 3.4:-88227140 MS.gene41622:CDS
CGGCGGAATTGGAGCGTCGG+AGG 0.537861 3.4:+88227909 None:intergenic
GGCAGAAGCTGCAGATGCAG+CGG 0.539070 3.4:-88227185 MS.gene41622:CDS
ATAATTATTTGGGTAGCCAT+AGG 0.541652 3.4:+88224360 None:intergenic
CGATTTCGAAATATTGGCGC+CGG 0.545993 3.4:+88227870 None:intergenic
CTCCGACGCTCCAATTCCGC+CGG 0.546387 3.4:-88227908 MS.gene41622:CDS
TTCCGGCGGAATTGGAGCGT+CGG 0.547964 3.4:+88227906 None:intergenic
TCAGAACCTCCGCCGTGACT+AGG 0.551721 3.4:+88224004 None:intergenic
ATATGCCAATTGATAATGTT+GGG 0.551779 3.4:-88224216 MS.gene41622:CDS
GGTGTTCCTAGTCACGGCGG+AGG 0.554778 3.4:-88224010 MS.gene41622:CDS
CTTTGCAAGGTAGTTACTGA+AGG 0.554885 3.4:+88224457 None:intergenic
TCGGTTGTCAACTGTTTGGA+AGG 0.557298 3.4:-88224691 MS.gene41622:CDS
ACCCGAAGGTTATCTTGGAA+GGG 0.560476 3.4:-88224290 MS.gene41622:CDS
AGCAATCCTTTGCCTTTGCA+AGG 0.561026 3.4:+88224444 None:intergenic
TTTGCTCAAACGAACCAAGT+TGG 0.563876 3.4:+88227036 None:intergenic
CACGAGTAAATCATATGTAT+GGG 0.568907 3.4:-88224081 MS.gene41622:CDS
AGATCCGGAAGAAGAAGAAG+AGG 0.570044 3.4:-88227581 MS.gene41622:CDS
CAAAGGTATAAGCCAAGTCA+AGG 0.575181 3.4:+88224942 None:intergenic
TCTATTGGTGTTCCTAGTCA+CGG 0.581422 3.4:-88224016 MS.gene41622:CDS
CCGGAAAACCAACACGACGC+CGG 0.582426 3.4:-88227889 MS.gene41622:CDS
TGGAAGGGGAGTGTCAATTG+GGG 0.588303 3.4:-88224275 MS.gene41622:CDS
AGGATTGCTGGTCATATGGA+TGG 0.590466 3.4:-88224430 MS.gene41622:CDS
CACCACCACCGCCGCAAATG+TGG 0.597720 3.4:-88227719 MS.gene41622:CDS
AAACCGAAATCAATTGCTGA+TGG 0.597725 3.4:-88227655 MS.gene41622:CDS
TCCGGAAGAAGAAGAAGAGG+AGG 0.599057 3.4:-88227578 MS.gene41622:CDS
GATATGCCAATTGATAATGT+TGG 0.599085 3.4:-88224217 MS.gene41622:CDS
CGCTGTGAGAGATCCTTATG+TGG 0.599605 3.4:-88224485 MS.gene41622:CDS
GAAGGTTGTCCTACAAAACT+CGG 0.601321 3.4:+88224109 None:intergenic
GCTTGCCTCGCAGTAATCAT+CGG 0.602636 3.4:+88227283 None:intergenic
TAACTACCTTGCAAAGGCAA+AGG 0.602902 3.4:-88224450 MS.gene41622:CDS
AAGAGACTCGTTGTTGAAGG+TGG 0.604637 3.4:-88227151 MS.gene41622:CDS
TTGGCCGCAGATATTGCTCA+GGG 0.605816 3.4:-88224995 MS.gene41622:intron
ATTGCATAGTGTAGATGAAG+GGG 0.606146 3.4:-88224158 MS.gene41622:CDS
TTCCAGACACAAAACGAACA+AGG 0.611479 3.4:-88224510 MS.gene41622:CDS
AAATTGGTGTTTGAATGCAT+TGG 0.613256 3.4:-88227349 MS.gene41622:CDS
AAATTTCTCTTCAAACCCAA+AGG 0.615925 3.4:+88224925 None:intergenic
GTTTCAGGGTCATTACCCGA+AGG 0.622716 3.4:-88224304 MS.gene41622:CDS
GATTGCATAGTGTAGATGAA+GGG 0.625547 3.4:-88224159 MS.gene41622:CDS
ACCAAAGAACTCGAAGCCCT+AGG 0.627329 3.4:-88227742 MS.gene41622:CDS
TATGGGAGAACATCTGCAGA+AGG 0.633484 3.4:-88224064 MS.gene41622:CDS
ATCGGTGACCACATTTGCGG+CGG 0.637660 3.4:+88227711 None:intergenic
GGAAGGGGAGTGTCAATTGG+GGG 0.638432 3.4:-88224274 MS.gene41622:CDS
AAAGGTATAAGCCAAGTCAA+GGG 0.641496 3.4:+88224943 None:intergenic
TTGTGCAGCAGATGCTACAG+TGG 0.649223 3.4:+88224336 None:intergenic
CTTCAGTAACTACCTTGCAA+AGG 0.651442 3.4:-88224456 MS.gene41622:CDS
GCAAGTGAAATGGATGCAAG+AGG 0.653741 3.4:-88227118 MS.gene41622:CDS
GAGCGTCGGAGGCTGTGGAG+TGG 0.654775 3.4:+88227920 None:intergenic
GTATATACTTTCGCAAACCA+CGG 0.657503 3.4:+88227446 None:intergenic
CAGATGCAGCGGGTGCATGG+AGG 0.661767 3.4:-88227174 MS.gene41622:CDS
AATGAATTCAGTACTGTCTG+GGG 0.662675 3.4:+88224899 None:intergenic
TGCAAAACGATGAATAGCCG+TGG 0.664115 3.4:-88227463 MS.gene41622:CDS
ACTCGTTGTTGAAGGTGGTG+TGG 0.682424 3.4:-88227146 MS.gene41622:CDS
ATTGGTGTTCCTAGTCACGG+CGG 0.753888 3.4:-88224013 MS.gene41622:CDS
ACTCACCGATGATTACTGCG+AGG 0.780604 3.4:-88227288 MS.gene41622:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAGTTTCAAAAATTA+GGG + chr3.4:88225474-88225493 None:intergenic 10.0%
!! TTTAAAAAGTTTCAAAAATT+AGG + chr3.4:88225475-88225494 None:intergenic 10.0%
!!! TAATTATTCAATTTTAATCA+TGG - chr3.4:88225251-88225270 MS.gene41622:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3.4:88225303-88225322 None:intergenic 100.0%
!! AGAAATATACACAAAATTAA+AGG + chr3.4:88226033-88226052 None:intergenic 15.0%
!! TAAAAAGTTTCAAAAATTAG+GGG + chr3.4:88225473-88225492 None:intergenic 15.0%
!!! AACTTTTTAAAATTTGTTGA+CGG - chr3.4:88225484-88225503 MS.gene41622:intron 15.0%
!!! ATATTTATCTGATTTGAAAT+CGG - chr3.4:88227191-88227210 MS.gene41622:CDS 15.0%
!! AACAAAATTAGCTACTTAAT+TGG + chr3.4:88227099-88227118 None:intergenic 20.0%
!! ATATTTATTTATGCCCAAAA+AGG + chr3.4:88226249-88226268 None:intergenic 20.0%
!! ATTCAATAGCTTAATCTAAA+AGG - chr3.4:88226524-88226543 MS.gene41622:intron 20.0%
!! TTTATAGCCAAAATATGAAT+CGG + chr3.4:88226302-88226321 None:intergenic 20.0%
!!! ACATTTAGAACTTATTTTGA+TGG - chr3.4:88225967-88225986 MS.gene41622:intron 20.0%
!!! ATTTTGAACTTGATTTTGAT+GGG - chr3.4:88225930-88225949 MS.gene41622:intron 20.0%
!!! CATTTAGAACTTATTTTGAT+GGG - chr3.4:88225968-88225987 MS.gene41622:intron 20.0%
! ACTGAAATAGATTATTTGAG+AGG + chr3.4:88226452-88226471 None:intergenic 25.0%
! AGCAAATGATCAGATATAAA+GGG + chr3.4:88226626-88226645 None:intergenic 25.0%
! ATGAAAACTCTTATGTAAGA+TGG - chr3.4:88225122-88225141 MS.gene41622:intron 25.0%
! ATGTTGTTAATCTTAGATAG+TGG + chr3.4:88226178-88226197 None:intergenic 25.0%
! CAAAAATATGAGAAAGCAAA+AGG + chr3.4:88226835-88226854 None:intergenic 25.0%
! CTACAGTGGAATAATTATTT+GGG + chr3.4:88227554-88227573 None:intergenic 25.0%
! GAACAAAAAGAAGAAGAAAA+AGG - chr3.4:88224399-88224418 MS.gene41622:CDS 25.0%
! TAAGGATACAATTCTCAAAT+TGG - chr3.4:88227275-88227294 MS.gene41622:CDS 25.0%
! TACAAAAGTCTAATGAAGTT+TGG - chr3.4:88227027-88227046 MS.gene41622:CDS 25.0%
! TCACAAATTTCAAATTGTAC+AGG + chr3.4:88225018-88225037 None:intergenic 25.0%
! TGTAGGATATATAATACTCA+TGG - chr3.4:88224974-88224993 MS.gene41622:CDS 25.0%
! TTATAGCCAAAATATGAATC+GGG + chr3.4:88226301-88226320 None:intergenic 25.0%
!! CATTTTGAACTTGATTTTGA+TGG - chr3.4:88225929-88225948 MS.gene41622:intron 25.0%
!!! AAAATTTGTTGACGGTATAT+TGG - chr3.4:88225492-88225511 MS.gene41622:intron 25.0%
!!! AATGTCACTGATTATTGTTT+TGG - chr3.4:88226887-88226906 MS.gene41622:intron 25.0%
!!! ATATGCCAATTGATAATGTT+GGG - chr3.4:88227685-88227704 MS.gene41622:CDS 25.0%
!!! TTTTTTGTTACGCTTCATAA+AGG - chr3.4:88227117-88227136 MS.gene41622:CDS 25.0%
AAAAATGGAACGTAAACTGA+AGG - chr3.4:88224695-88224714 MS.gene41622:CDS 30.0%
AAAAGGAGGAAAAAATGCTT+TGG - chr3.4:88226541-88226560 MS.gene41622:intron 30.0%
AAATGAATTCAGTACTGTCT+GGG + chr3.4:88227006-88227025 None:intergenic 30.0%
AAATTTCTCTTCAAACCCAA+AGG + chr3.4:88226979-88226998 None:intergenic 30.0%
AACCATGCAATTGCTTAAAA+AGG + chr3.4:88226477-88226496 None:intergenic 30.0%
AATTGAATGATCAAACACGT+GGG + chr3.4:88225546-88225565 None:intergenic 30.0%
AGAAGAATAAACAGGAATAG+GGG + chr3.4:88226776-88226795 None:intergenic 30.0%
AGAGTTTGAATAACATGAGA+AGG + chr3.4:88226683-88226702 None:intergenic 30.0%
AGGCATTCATACAATCATTA+AGG + chr3.4:88226815-88226834 None:intergenic 30.0%
ATAATTATTTGGGTAGCCAT+AGG + chr3.4:88227544-88227563 None:intergenic 30.0%
ATGTATTGTATACATGCCTT+TGG - chr3.4:88224948-88224967 MS.gene41622:CDS 30.0%
CAAATGATCAGATATAAAGG+GGG + chr3.4:88226624-88226643 None:intergenic 30.0%
CAATAGCTTAATCTAAAAGG+AGG - chr3.4:88226527-88226546 MS.gene41622:intron 30.0%
CAATTCAAGCTTTCAAAAAC+AGG - chr3.4:88224082-88224101 MS.gene41622:CDS 30.0%
CACAAATTGAATCTGTTTCA+GGG - chr3.4:88227583-88227602 MS.gene41622:CDS 30.0%
CACGAGTAAATCATATGTAT+GGG - chr3.4:88227820-88227839 MS.gene41622:CDS 30.0%
CAGAAGAATAAACAGGAATA+GGG + chr3.4:88226777-88226796 None:intergenic 30.0%
CTCAGTTGACCTTAAATAAA+TGG + chr3.4:88226355-88226374 None:intergenic 30.0%
CTTTGACAGAATAAAGCAAA+TGG - chr3.4:88227165-88227184 MS.gene41622:CDS 30.0%
GAGCAAATGATCAGATATAA+AGG + chr3.4:88226627-88226646 None:intergenic 30.0%
GCAAATGATCAGATATAAAG+GGG + chr3.4:88226625-88226644 None:intergenic 30.0%
GCTACAGTGGAATAATTATT+TGG + chr3.4:88227555-88227574 None:intergenic 30.0%
GGCATTCATACAATCATTAA+GGG + chr3.4:88226814-88226833 None:intergenic 30.0%
TAGGATTCAGAAGAATAAAC+AGG + chr3.4:88226784-88226803 None:intergenic 30.0%
TATATATCCTACATTCCCAA+AGG + chr3.4:88224967-88224986 None:intergenic 30.0%
TCAGAAGAATAAACAGGAAT+AGG + chr3.4:88226778-88226797 None:intergenic 30.0%
TGAAAAACAAACCAACAGTA+TGG + chr3.4:88225151-88225170 None:intergenic 30.0%
TGATATGTTTGTAAGAGCAA+TGG - chr3.4:88225841-88225860 MS.gene41622:intron 30.0%
TGTATTGTATACATGCCTTT+GGG - chr3.4:88224949-88224968 MS.gene41622:CDS 30.0%
TGTTGAAAGTGAAGCAAAAA+TGG - chr3.4:88224680-88224699 MS.gene41622:CDS 30.0%
TTTATTTATGCCCAAAAAGG+AGG + chr3.4:88226246-88226265 None:intergenic 30.0%
! AAATTGGTGTTTGAATGCAT+TGG - chr3.4:88224552-88224571 MS.gene41622:CDS 30.0%
! ATTGGTAGATTTTACCTTCA+AGG - chr3.4:88224570-88224589 MS.gene41622:CDS 30.0%
! CTATCCGCTATAACATTTTT+GGG - chr3.4:88226138-88226157 MS.gene41622:intron 30.0%
! TATCCGCTATAACATTTTTG+GGG - chr3.4:88226139-88226158 MS.gene41622:intron 30.0%
! TCAAAAATTAGGGGTTTTAC+AGG + chr3.4:88225464-88225483 None:intergenic 30.0%
! TGTATGATGTATCTACGTTT+TGG - chr3.4:88226653-88226672 MS.gene41622:intron 30.0%
! TTCATTAACAGCACATTTTC+TGG - chr3.4:88227509-88227528 MS.gene41622:CDS 30.0%
!! AAAAATGTTATAGCGGATAG+CGG + chr3.4:88226138-88226157 None:intergenic 30.0%
!! ACAATTTTAGGTCACTCAAA+GGG + chr3.4:88225521-88225540 None:intergenic 30.0%
!! ATTCACCGATTTCGAAATAT+TGG + chr3.4:88224040-88224059 None:intergenic 30.0%
!! GATATGCCAATTGATAATGT+TGG - chr3.4:88227684-88227703 MS.gene41622:CDS 30.0%
!! TACAATTTTAGGTCACTCAA+AGG + chr3.4:88225522-88225541 None:intergenic 30.0%
AAACCGAAATCAATTGCTGA+TGG - chr3.4:88224246-88224265 MS.gene41622:CDS 35.0%
AAAGATATTCGTGATGTCAC+TGG - chr3.4:88227300-88227319 MS.gene41622:CDS 35.0%
AACAGAACAGAGCAAGAATA+AGG + chr3.4:88225816-88225835 None:intergenic 35.0%
AATAAATGGTCTGCGACAAA+TGG + chr3.4:88226341-88226360 None:intergenic 35.0%
AATGAATTCAGTACTGTCTG+GGG + chr3.4:88227005-88227024 None:intergenic 35.0%
ACAACAGTATGCTATACACA+GGG + chr3.4:88226384-88226403 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGATC+CGG - chr3.4:88224305-88224324 MS.gene41622:CDS 35.0%
AGATTGCATAGTGTAGATGA+AGG - chr3.4:88227741-88227760 MS.gene41622:CDS 35.0%
AGGTTCGAAATAAGTATGAG+GGG - chr3.4:88225214-88225233 MS.gene41622:intron 35.0%
ATTGCATAGTGTAGATGAAG+GGG - chr3.4:88227743-88227762 MS.gene41622:CDS 35.0%
ATTTCGAACCTGATGTTAGT+AGG + chr3.4:88225205-88225224 None:intergenic 35.0%
CAATTGAATGATCAAACACG+TGG + chr3.4:88225547-88225566 None:intergenic 35.0%
CAGGTTCGAAATAAGTATGA+GGG - chr3.4:88225213-88225232 MS.gene41622:intron 35.0%
CCATTAAAGTCACGTTCTAA+AGG + chr3.4:88225893-88225912 None:intergenic 35.0%
CGTGTTTGATCATTCAATTG+TGG - chr3.4:88225547-88225566 MS.gene41622:intron 35.0%
GAAATGAATTCAGTACTGTC+TGG + chr3.4:88227007-88227026 None:intergenic 35.0%
GATTGCATAGTGTAGATGAA+GGG - chr3.4:88227742-88227761 MS.gene41622:CDS 35.0%
GCACAAATTGAATCTGTTTC+AGG - chr3.4:88227582-88227601 MS.gene41622:CDS 35.0%
GCACGAGTAAATCATATGTA+TGG - chr3.4:88227819-88227838 MS.gene41622:CDS 35.0%
GCATACTGTTGTATTGTCTT+AGG - chr3.4:88226392-88226411 MS.gene41622:intron 35.0%
GTATATACTTTCGCAAACCA+CGG + chr3.4:88224458-88224477 None:intergenic 35.0%
GTATCCTTAAGTTTCCAATC+AGG + chr3.4:88227264-88227283 None:intergenic 35.0%
GTGATCAGTGAAATAAGCTA+GGG - chr3.4:88225040-88225059 MS.gene41622:intron 35.0%
GTTGTCCCAACATTATCAAT+TGG + chr3.4:88227693-88227712 None:intergenic 35.0%
TAAGATGGAATCCATACTGT+TGG - chr3.4:88225137-88225156 MS.gene41622:intron 35.0%
TACAACAGTATGCTATACAC+AGG + chr3.4:88226385-88226404 None:intergenic 35.0%
TATGGTTGGAAACATGTCTA+GGG + chr3.4:88226719-88226738 None:intergenic 35.0%
TCAGGTTCGAAATAAGTATG+AGG - chr3.4:88225212-88225231 MS.gene41622:intron 35.0%
TCTTCCTGATTGGAAACTTA+AGG - chr3.4:88227257-88227276 MS.gene41622:CDS 35.0%
TCTTCTTCTTCTTCTTCTTC+AGG + chr3.4:88224294-88224313 None:intergenic 35.0%
TGAGTATGTATGTATTCTGC+TGG - chr3.4:88226058-88226077 MS.gene41622:intron 35.0%
TGGAACAATGTTACCGTTAT+CGG + chr3.4:88224211-88224230 None:intergenic 35.0%
TGTCGCAGACCATTTATTTA+AGG - chr3.4:88226343-88226362 MS.gene41622:intron 35.0%
TGTGATCAGTGAAATAAGCT+AGG - chr3.4:88225039-88225058 MS.gene41622:intron 35.0%
TTATGGTTGGAAACATGTCT+AGG + chr3.4:88226720-88226739 None:intergenic 35.0%
TTCAACGTCCAAGAGAAAAT+TGG - chr3.4:88227338-88227357 MS.gene41622:CDS 35.0%
TTGCAAAACTTCTTCCTGAT+TGG - chr3.4:88227247-88227266 MS.gene41622:CDS 35.0%
TTGGAATACTATCTGATGTC+TGG - chr3.4:88224654-88224673 MS.gene41622:CDS 35.0%
TTTCCCCAAAATTGCAATAG+CGG + chr3.4:88225439-88225458 None:intergenic 35.0%
! AAAGGTATAAGCCAAGTCAA+GGG + chr3.4:88226961-88226980 None:intergenic 35.0%
! AATCATTAAGGGTGTGTGAT+AGG + chr3.4:88226803-88226822 None:intergenic 35.0%
! ATGATATCAGTCCTCCTTTT+TGG - chr3.4:88226232-88226251 MS.gene41622:intron 35.0%
! ATTAACAGCACATTTTCTGG+AGG - chr3.4:88227512-88227531 MS.gene41622:CDS 35.0%
! ATTGATTTCGGTTTCGATTC+TGG + chr3.4:88224240-88224259 None:intergenic 35.0%
! CATTCAAACACCAATTTTGC+CGG + chr3.4:88224549-88224568 None:intergenic 35.0%
! GCTATCCGCTATAACATTTT+TGG - chr3.4:88226137-88226156 MS.gene41622:intron 35.0%
! GCTTTTGTCCAATTTTCTCT+TGG + chr3.4:88227349-88227368 None:intergenic 35.0%
! TGATATCAGTCCTCCTTTTT+GGG - chr3.4:88226233-88226252 MS.gene41622:intron 35.0%
! TTAACAGCACATTTTCTGGA+GGG - chr3.4:88227513-88227532 MS.gene41622:CDS 35.0%
! TTGGGATTCATGGTGTTTTT+AGG - chr3.4:88224829-88224848 MS.gene41622:intron 35.0%
! TTTTGTAGGACAACCTTCAT+CGG - chr3.4:88227797-88227816 MS.gene41622:CDS 35.0%
!! AAAATGTTATAGCGGATAGC+GGG + chr3.4:88226137-88226156 None:intergenic 35.0%
!! AACACGTGGGTTACAATTTT+AGG + chr3.4:88225533-88225552 None:intergenic 35.0%
!! AATTTTAGGTCACTCAAAGG+GGG + chr3.4:88225519-88225538 None:intergenic 35.0%
!! CAATTTTAGGTCACTCAAAG+GGG + chr3.4:88225520-88225539 None:intergenic 35.0%
!! CCTTTAGAACGTGACTTTAA+TGG - chr3.4:88225890-88225909 MS.gene41622:intron 35.0%
!! GACCTTTTTAAGCAATTGCA+TGG - chr3.4:88226472-88226491 MS.gene41622:intron 35.0%
!! TTGACTTGGCTTATACCTTT+GGG - chr3.4:88226961-88226980 MS.gene41622:intron 35.0%
!!! GCAAGCTTCAATTTTGGTTT+TGG - chr3.4:88224635-88224654 MS.gene41622:CDS 35.0%
!!! TCATGGTGTTTTTAGGAATG+AGG - chr3.4:88224836-88224855 MS.gene41622:CDS 35.0%
!!! TTTTTTAGTCTTCACAGCAC+CGG - chr3.4:88226107-88226126 MS.gene41622:intron 35.0%
ACACCAATAGAGTGATGATC+TGG + chr3.4:88227876-88227895 None:intergenic 40.0%
ACACTGTATCACGCTATTGA+CGG + chr3.4:88225283-88225302 None:intergenic 40.0%
ACTGTTGTATTGTCTTAGGC+TGG - chr3.4:88226396-88226415 MS.gene41622:intron 40.0%
ATGGTTGGAAACATGTCTAG+GGG + chr3.4:88226718-88226737 None:intergenic 40.0%
CAGATATAAAGGGGGAATCT+TGG + chr3.4:88226616-88226635 None:intergenic 40.0%
CCAACCATAACTAACTGAAC+TGG - chr3.4:88226730-88226749 MS.gene41622:intron 40.0%
CCAGTTCAGTTAGTTATGGT+TGG + chr3.4:88226733-88226752 None:intergenic 40.0%
CGACCCCAAAAATGTTATAG+CGG + chr3.4:88226145-88226164 None:intergenic 40.0%
CTTCAGTAACTACCTTGCAA+AGG - chr3.4:88227445-88227464 MS.gene41622:CDS 40.0%
CTTTGCAAGGTAGTTACTGA+AGG + chr3.4:88227447-88227466 None:intergenic 40.0%
GAAATCGGTTGTCAACTGTT+TGG - chr3.4:88227206-88227225 MS.gene41622:CDS 40.0%
GAAGGTTGTCCTACAAAACT+CGG + chr3.4:88227795-88227814 None:intergenic 40.0%
GAATGAGGATATTGCCAACT+TGG - chr3.4:88224851-88224870 MS.gene41622:CDS 40.0%
GATGCCAGTTCAGTTAGTTA+TGG + chr3.4:88226737-88226756 None:intergenic 40.0%
GCTCAGGGAATGATGAAAAA+GGG - chr3.4:88226921-88226940 MS.gene41622:intron 40.0%
GGTAGAAGAAGAAGTAGAAG+AGG - chr3.4:88224344-88224363 MS.gene41622:CDS 40.0%
GTCGCTTAAGGAAAAAATCC+CGG - chr3.4:88224500-88224519 MS.gene41622:CDS 40.0%
TAACTACCTTGCAAAGGCAA+AGG - chr3.4:88227451-88227470 MS.gene41622:CDS 40.0%
TATAGGCTTTGCTTCCTTGA+AGG + chr3.4:88224587-88224606 None:intergenic 40.0%
TCATTACCCGAAGGTTATCT+TGG - chr3.4:88227606-88227625 MS.gene41622:CDS 40.0%
TCTCCTTGATCGTTCAATTG+TGG - chr3.4:88225702-88225721 MS.gene41622:intron 40.0%
TGCTCAGGGAATGATGAAAA+AGG - chr3.4:88226920-88226939 MS.gene41622:intron 40.0%
TTCCAGACACAAAACGAACA+AGG - chr3.4:88227391-88227410 MS.gene41622:CDS 40.0%
TTGCCAGATCATCACTCTAT+TGG - chr3.4:88227870-88227889 MS.gene41622:CDS 40.0%
TTGGAACATACCAGCAAACT+AGG + chr3.4:88227080-88227099 None:intergenic 40.0%
TTTGCTCAAACGAACCAAGT+TGG + chr3.4:88224868-88224887 None:intergenic 40.0%
! ACTCTTTTTCTTGCGTGCTT+TGG - chr3.4:88224810-88224829 MS.gene41622:intron 40.0%
! ATACATGCCTTTGGGAATGT+AGG - chr3.4:88224957-88224976 MS.gene41622:CDS 40.0%
! ATGGCCGCTATTGCAATTTT+GGG - chr3.4:88225432-88225451 MS.gene41622:intron 40.0%
! ATGGTTCTGCAGTTTATGGT+GGG - chr3.4:88226491-88226510 MS.gene41622:intron 40.0%
! CAAAGGTATAAGCCAAGTCA+AGG + chr3.4:88226962-88226981 None:intergenic 40.0%
! CTACTCTAAAGGTGATTCAC+GGG + chr3.4:88225382-88225401 None:intergenic 40.0%
! CTCTTTTTCTTGCGTGCTTT+GGG - chr3.4:88224811-88224830 MS.gene41622:intron 40.0%
! GCTACTCTAAAGGTGATTCA+CGG + chr3.4:88225383-88225402 None:intergenic 40.0%
! TAAAGGTACACTTGCAGAAC+CGG + chr3.4:88225876-88225895 None:intergenic 40.0%
! TAGGGGTACAATCAGATAGT+TGG + chr3.4:88226759-88226778 None:intergenic 40.0%
! TCGCCATCAGCAATTGATTT+CGG + chr3.4:88224252-88224271 None:intergenic 40.0%
! TCTATTGGTGTTCCTAGTCA+CGG - chr3.4:88227885-88227904 MS.gene41622:CDS 40.0%
! TCTGAGCCCGATTCATATTT+TGG - chr3.4:88226292-88226311 MS.gene41622:intron 40.0%
! TTGCATGGTTCTGCAGTTTA+TGG - chr3.4:88226487-88226506 MS.gene41622:intron 40.0%
!! CATCGGTGAGTTTGTTGTAT+AGG + chr3.4:88224604-88224623 None:intergenic 40.0%
!! CTTGACTTGGCTTATACCTT+TGG - chr3.4:88226960-88226979 MS.gene41622:intron 40.0%
!! GATGAAGGGGCATTATCTTA+CGG - chr3.4:88227756-88227775 MS.gene41622:CDS 40.0%
!! GTGAATCACCTTTAGAGTAG+CGG - chr3.4:88225382-88225401 MS.gene41622:intron 40.0%
!! TTCTTTGGTTCTGGTTTCGA+TGG + chr3.4:88224148-88224167 None:intergenic 40.0%
!!! CGCTATAACATTTTTGGGGT+CGG - chr3.4:88226143-88226162 MS.gene41622:intron 40.0%
!!! GGGATTTTTTCCTTAAGCGA+CGG + chr3.4:88224501-88224520 None:intergenic 40.0%
AAACATGTCTAGGGGTGGTT+AGG + chr3.4:88226710-88226729 None:intergenic 45.0%
AACCCTAAACAGAGCAACGA+TGG + chr3.4:88225761-88225780 None:intergenic 45.0%
AAGAGACTCGTTGTTGAAGG+TGG - chr3.4:88224750-88224769 MS.gene41622:intron 45.0%
ACATCTGCAGAAGGTTATGC+AGG - chr3.4:88227846-88227865 MS.gene41622:CDS 45.0%
ACCCGAAGGTTATCTTGGAA+GGG - chr3.4:88227611-88227630 MS.gene41622:CDS 45.0%
ACCTCCTCTTCTTCTTCTTC+CGG + chr3.4:88224327-88224346 None:intergenic 45.0%
ACTGAAGGTGATGCCACATA+AGG + chr3.4:88227432-88227451 None:intergenic 45.0%
AGATCCGGAAGAAGAAGAAG+AGG - chr3.4:88224320-88224339 MS.gene41622:CDS 45.0%
AGCAATCCTTTGCCTTTGCA+AGG + chr3.4:88227460-88227479 None:intergenic 45.0%
AGGAAGAGACTCGTTGTTGA+AGG - chr3.4:88224747-88224766 MS.gene41622:intron 45.0%
AGGATTGCTGGTCATATGGA+TGG - chr3.4:88227471-88227490 MS.gene41622:CDS 45.0%
AGGCCACAATTGAACGATCA+AGG + chr3.4:88225708-88225727 None:intergenic 45.0%
AGTTGTTGAAGCCCTTGACT+TGG - chr3.4:88226947-88226966 MS.gene41622:intron 45.0%
ATAAAGGGGGAATCTTGGCA+AGG + chr3.4:88226611-88226630 None:intergenic 45.0%
CAAAACAGAGCACGAACAAG+AGG + chr3.4:88225728-88225747 None:intergenic 45.0%
CAATTGCACCGCTACTCTAA+AGG + chr3.4:88225393-88225412 None:intergenic 45.0%
CATTCCCTGAGCAATATCTG+CGG + chr3.4:88226913-88226932 None:intergenic 45.0%
CGATTTCGAAATATTGGCGC+CGG + chr3.4:88224034-88224053 None:intergenic 45.0%
CGGCGCCAATATTTCGAAAT+CGG - chr3.4:88224032-88224051 MS.gene41622:CDS 45.0%
GAAGAACTCAAACGAGAGCA+AGG + chr3.4:88225653-88225672 None:intergenic 45.0%
GAATCGGGCTCAGAAATAAC+AGG + chr3.4:88226286-88226305 None:intergenic 45.0%
GCAAAGGATTGCTGGTCATA+TGG - chr3.4:88227467-88227486 MS.gene41622:CDS 45.0%
GCAAATGTGGTCACCGATAA+CGG - chr3.4:88224195-88224214 MS.gene41622:CDS 45.0%
GCAAGTGAAATGGATGCAAG+AGG - chr3.4:88224783-88224802 MS.gene41622:intron 45.0%
GCTTAAGGAAAAAATCCCGG+TGG - chr3.4:88224503-88224522 MS.gene41622:CDS 45.0%
GTCTGCGACAAATGGTTAGT+GGG + chr3.4:88226333-88226352 None:intergenic 45.0%
GTTACCAGCCTACTAACATC+AGG - chr3.4:88225194-88225213 MS.gene41622:intron 45.0%
GTTATCGGTGACCACATTTG+CGG + chr3.4:88224196-88224215 None:intergenic 45.0%
TACCCGAAGGTTATCTTGGA+AGG - chr3.4:88227610-88227629 MS.gene41622:CDS 45.0%
TACCTGAAACCCTGCTAGAA+AGG + chr3.4:88224929-88224948 None:intergenic 45.0%
TATGGGAGAACATCTGCAGA+AGG - chr3.4:88227837-88227856 MS.gene41622:CDS 45.0%
TCACTCTGATAGCCAGAAAG+TGG + chr3.4:88227666-88227685 None:intergenic 45.0%
TCCCCTTCCAAGATAACCTT+CGG + chr3.4:88227616-88227635 None:intergenic 45.0%
TCGGTTGTCAACTGTTTGGA+AGG - chr3.4:88227210-88227229 MS.gene41622:CDS 45.0%
TCTGCGACAAATGGTTAGTG+GGG + chr3.4:88226332-88226351 None:intergenic 45.0%
TGCAAAACGATGAATAGCCG+TGG - chr3.4:88224438-88224457 MS.gene41622:CDS 45.0%
TGCCATCGTTGCTCTGTTTA+GGG - chr3.4:88225756-88225775 MS.gene41622:intron 45.0%
TGTGGCTATGGCAAGTGAAA+TGG - chr3.4:88224773-88224792 MS.gene41622:intron 45.0%
TTAGAGTAGCGGTGCAATTG+TGG - chr3.4:88225393-88225412 MS.gene41622:intron 45.0%
TTGCAAAGGCAAAGGATTGC+TGG - chr3.4:88227459-88227478 MS.gene41622:CDS 45.0%
! ACGTGATGTTCCTAGTTTGC+TGG - chr3.4:88227067-88227086 MS.gene41622:CDS 45.0%
! CATGGTTCTGCAGTTTATGG+TGG - chr3.4:88226490-88226509 MS.gene41622:intron 45.0%
! CGTTGCTCTGTTTAGGGTTA+GGG - chr3.4:88225762-88225781 MS.gene41622:intron 45.0%
! GATGGCCGCTATTGCAATTT+TGG - chr3.4:88225431-88225450 MS.gene41622:intron 45.0%
! TCGTTGCTCTGTTTAGGGTT+AGG - chr3.4:88225761-88225780 MS.gene41622:intron 45.0%
! TGATTTACTCGTGCCGATGA+AGG + chr3.4:88227813-88227832 None:intergenic 45.0%
! TGCGAGGCAAGCTTCAATTT+TGG - chr3.4:88224629-88224648 MS.gene41622:CDS 45.0%
! TGGCCGCTATTGCAATTTTG+GGG - chr3.4:88225433-88225452 MS.gene41622:intron 45.0%
! TTGGTTCGTTTGAGCAAACC+TGG - chr3.4:88224870-88224889 MS.gene41622:CDS 45.0%
! TTTCTGGAGGGTAGATCCTA+TGG - chr3.4:88227525-88227544 MS.gene41622:CDS 45.0%
!! GGTTTCGATTCTGGTTCAGA+TGG + chr3.4:88224231-88224250 None:intergenic 45.0%
!! TGCCTTGTTCGTTTTGTGTC+TGG + chr3.4:88227396-88227415 None:intergenic 45.0%
!! TTGGAAGGGGAGTGTCAATT+GGG - chr3.4:88227625-88227644 MS.gene41622:CDS 45.0%
!!! AACACCAATTTTGCCGGTTC+CGG + chr3.4:88224543-88224562 None:intergenic 45.0%
AACAACAATGCCAGCAGAGC+AGG + chr3.4:88225683-88225702 None:intergenic 50.0%
AACGAGAGCAGAGAAGAACG+AGG + chr3.4:88225592-88225611 None:intergenic 50.0%
AAGGTGATTCACGGGCCTAA+TGG + chr3.4:88225374-88225393 None:intergenic 50.0%
ACCAAAGAACTCGAAGCCCT+AGG - chr3.4:88224159-88224178 MS.gene41622:CDS 50.0%
ACGAGAGCAGAGAAGAACGA+GGG + chr3.4:88225591-88225610 None:intergenic 50.0%
ACTCACCGATGATTACTGCG+AGG - chr3.4:88224613-88224632 MS.gene41622:CDS 50.0%
ACTCGTTGTTGAAGGTGGTG+TGG - chr3.4:88224755-88224774 MS.gene41622:intron 50.0%
AGAGCAATGGCATCATCCTC+CGG - chr3.4:88225854-88225873 MS.gene41622:intron 50.0%
CCCCTTCCAAGATAACCTTC+GGG + chr3.4:88227615-88227634 None:intergenic 50.0%
CCCGAAGGTTATCTTGGAAG+GGG - chr3.4:88227612-88227631 MS.gene41622:CDS 50.0%
CGAACCTGATGTTAGTAGGC+TGG + chr3.4:88225201-88225220 None:intergenic 50.0%
CGCTGTGAGAGATCCTTATG+TGG - chr3.4:88227416-88227435 MS.gene41622:CDS 50.0%
CGGGCTCAGAAATAACAGGT+GGG + chr3.4:88226282-88226301 None:intergenic 50.0%
CTGCCATCGTTGCTCTGTTT+AGG - chr3.4:88225755-88225774 MS.gene41622:intron 50.0%
GCTTGCCTCGCAGTAATCAT+CGG + chr3.4:88224621-88224640 None:intergenic 50.0%
GGTCTGCGACAAATGGTTAG+TGG + chr3.4:88226334-88226353 None:intergenic 50.0%
GTTGGAAACATGTCTAGGGG+TGG + chr3.4:88226715-88226734 None:intergenic 50.0%
GTTTCAGGGTCATTACCCGA+AGG - chr3.4:88227597-88227616 MS.gene41622:CDS 50.0%
TCCGGAAGAAGAAGAAGAGG+AGG - chr3.4:88224323-88224342 MS.gene41622:CDS 50.0%
TCGGGCTCAGAAATAACAGG+TGG + chr3.4:88226283-88226302 None:intergenic 50.0%
TGCAATTGTGGCGCCATACT+CGG - chr3.4:88225405-88225424 MS.gene41622:intron 50.0%
TGTTGAAGGTGGTGTGGCTA+TGG - chr3.4:88224761-88224780 MS.gene41622:intron 50.0%
TTCTCTGTTTCCTGCTCTGC+TGG - chr3.4:88225670-88225689 MS.gene41622:intron 50.0%
TTGGCCGCAGATATTGCTCA+GGG - chr3.4:88226906-88226925 MS.gene41622:intron 50.0%
TTGTGCAGCAGATGCTACAG+TGG + chr3.4:88227568-88227587 None:intergenic 50.0%
TTTGGCCGCAGATATTGCTC+AGG - chr3.4:88226905-88226924 MS.gene41622:intron 50.0%
! AATCCCGGTGGCACTGAAAA+AGG - chr3.4:88224515-88224534 MS.gene41622:CDS 50.0%
! AGAAGGTGCGAGATTTCTCC+AGG + chr3.4:88224891-88224910 None:intergenic 50.0%
! AGCCTTTCTAGCAGGGTTTC+AGG - chr3.4:88224924-88224943 MS.gene41622:CDS 50.0%
! ATCGTTTTGCACAGCGAGTG+AGG + chr3.4:88224429-88224448 None:intergenic 50.0%
! ATCTGAAACGCCGTCGCTTA+AGG - chr3.4:88224488-88224507 MS.gene41622:CDS 50.0%
! ATTGGTGTTCCTAGTCACGG+CGG - chr3.4:88227888-88227907 MS.gene41622:CDS 50.0%
! GGCTTCGAGTTCTTTGGTTC+TGG + chr3.4:88224157-88224176 None:intergenic 50.0%
! TTCTGGGAGCCTTTCTAGCA+GGG - chr3.4:88224917-88224936 MS.gene41622:CDS 50.0%
! TTTCTGGGAGCCTTTCTAGC+AGG - chr3.4:88224916-88224935 MS.gene41622:CDS 50.0%
!! CTTGCGTGCTTTGGGATTCA+TGG - chr3.4:88224819-88224838 MS.gene41622:intron 50.0%
!! CTTGGAAGGGGAGTGTCAAT+TGG - chr3.4:88227624-88227643 MS.gene41622:CDS 50.0%
!! TCAGTCGAGCCGAGTTTTGT+AGG - chr3.4:88227783-88227802 MS.gene41622:CDS 50.0%
!! TGGAAGGGGAGTGTCAATTG+GGG - chr3.4:88227626-88227645 MS.gene41622:CDS 50.0%
!!! TGTTGGTTTTCCGGCGGAAT+TGG + chr3.4:88224006-88224025 None:intergenic 50.0%
AGCGGCCATCAAACCGAGTA+TGG + chr3.4:88225421-88225440 None:intergenic 55.0%
AGGTACACTTGCAGAACCGG+AGG + chr3.4:88225873-88225892 None:intergenic 55.0%
ATCGGTGACCACATTTGCGG+CGG + chr3.4:88224193-88224212 None:intergenic 55.0%
CGCACCTTCTTCGCGTTTCT+GGG - chr3.4:88224901-88224920 MS.gene41622:CDS 55.0%
GATTCACGGGCCTAATGGCA+TGG + chr3.4:88225369-88225388 None:intergenic 55.0%
GCCAGAAAGTGGACCACCTA+TGG + chr3.4:88227655-88227674 None:intergenic 55.0%
GCCATAGGTGGTCCACTTTC+TGG - chr3.4:88227651-88227670 MS.gene41622:CDS 55.0%
GGGTGTGTGTGTGTGTGTGT+GGG + chr3.4:88225332-88225351 None:intergenic 55.0%
GGTGTGTGTGTGTGTGTGTG+GGG + chr3.4:88225331-88225350 None:intergenic 55.0%
GTGTCAATTGGGGGAGCCAT+AGG - chr3.4:88227636-88227655 MS.gene41622:CDS 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG + chr3.4:88225330-88225349 None:intergenic 55.0%
TCAATTGGGGGAGCCATAGG+TGG - chr3.4:88227639-88227658 MS.gene41622:CDS 55.0%
TCGCACCTTCTTCGCGTTTC+TGG - chr3.4:88224900-88224919 MS.gene41622:CDS 55.0%
TGTGTGTGTGTGTGTGTGGG+GGG + chr3.4:88225329-88225348 None:intergenic 55.0%
! GCCTAGGGCTTCGAGTTCTT+TGG + chr3.4:88224163-88224182 None:intergenic 55.0%
! TGGCGCCATACTCGGTTTGA+TGG - chr3.4:88225413-88225432 MS.gene41622:intron 55.0%
!! ACTGAAAAAGGCGCCGGAAC+CGG - chr3.4:88224527-88224546 MS.gene41622:CDS 55.0%
!! GGAAGGGGAGTGTCAATTGG+GGG - chr3.4:88227627-88227646 MS.gene41622:CDS 55.0%
AATGGCATGGCCGTGGAGGA+GGG + chr3.4:88225356-88225375 None:intergenic 60.0%
CCGGAAAACCAACACGACGC+CGG - chr3.4:88224012-88224031 MS.gene41622:CDS 60.0%
GCAGAAGCTGCAGATGCAGC+GGG - chr3.4:88224717-88224736 MS.gene41622:CDS 60.0%
GGCAGAAGCTGCAGATGCAG+CGG - chr3.4:88224716-88224735 MS.gene41622:CDS 60.0%
GGCTCCCAGAAACGCGAAGA+AGG + chr3.4:88224908-88224927 None:intergenic 60.0%
GGGGTGTGTGTGTGTGTGTG+TGG + chr3.4:88225333-88225352 None:intergenic 60.0%
GTGTGTGTGTGTGTGTGGGG+GGG + chr3.4:88225328-88225347 None:intergenic 60.0%
TAATGGCATGGCCGTGGAGG+AGG + chr3.4:88225357-88225376 None:intergenic 60.0%
TCAGAACCTCCGCCGTGACT+AGG + chr3.4:88227900-88227919 None:intergenic 60.0%
TCCTCCACGGCCATGCCATT+AGG - chr3.4:88225356-88225375 MS.gene41622:intron 60.0%
TGTGTGTGTGTGTGTGGGGG+GGG + chr3.4:88225327-88225346 None:intergenic 60.0%
TTCCGGCGGAATTGGAGCGT+CGG + chr3.4:88223998-88224017 None:intergenic 60.0%
! GAAGAACGAGGGCACGACGA+TGG + chr3.4:88225580-88225599 None:intergenic 60.0%
! GGTGGCACTGAAAAAGGCGC+CGG - chr3.4:88224521-88224540 MS.gene41622:CDS 60.0%
!! AATTGGAGCGTCGGAGGCTG+TGG + chr3.4:88223989-88224008 None:intergenic 60.0%
!! ATAGCGGATAGCGGGATCGC+CGG + chr3.4:88226129-88226148 None:intergenic 60.0%
!!! CCGGCGTCGTGTTGGTTTTC+CGG + chr3.4:88224015-88224034 None:intergenic 60.0%
!!! GCGCCTTTTTCAGTGCCACC+GGG + chr3.4:88224521-88224540 None:intergenic 60.0%
!!! GCGTCGTGTTGGTTTTCCGG+CGG + chr3.4:88224012-88224031 None:intergenic 60.0%
!!! GGCGCCTTTTTCAGTGCCAC+CGG + chr3.4:88224522-88224541 None:intergenic 60.0%
ATGGCATGGCCGTGGAGGAG+GGG + chr3.4:88225355-88225374 None:intergenic 65.0%
CACCACCACCGCCGCAAATG+TGG - chr3.4:88224182-88224201 MS.gene41622:CDS 65.0%
CAGATGCAGCGGGTGCATGG+AGG - chr3.4:88224727-88224746 MS.gene41622:CDS 65.0%
CTCCGACGCTCCAATTCCGC+CGG - chr3.4:88223993-88224012 MS.gene41622:CDS 65.0%
CTGCAGATGCAGCGGGTGCA+TGG - chr3.4:88224724-88224743 MS.gene41622:CDS 65.0%
GACCACATTTGCGGCGGTGG+TGG + chr3.4:88224187-88224206 None:intergenic 65.0%
GCCTAATGGCATGGCCGTGG+AGG + chr3.4:88225360-88225379 None:intergenic 65.0%
GGTGACCACATTTGCGGCGG+TGG + chr3.4:88224190-88224209 None:intergenic 65.0%
GGTGTTCCTAGTCACGGCGG+AGG - chr3.4:88227891-88227910 MS.gene41622:CDS 65.0%
GTGTGTGTGTGTGTGGGGGG+GGG + chr3.4:88225326-88225345 None:intergenic 65.0%
TGTGTGTGTGTGTGGGGGGG+GGG + chr3.4:88225325-88225344 None:intergenic 65.0%
! GAGGGCACGACGATGGAGAG+AGG + chr3.4:88225573-88225592 None:intergenic 65.0%
! GGCGCCGGAACCGGCAAAAT+TGG - chr3.4:88224536-88224555 MS.gene41622:CDS 65.0%
!! TATTGGCGCCGGCGTCGTGT+TGG + chr3.4:88224023-88224042 None:intergenic 65.0%
CACACACCCCCCCTCCTCCA+CGG - chr3.4:88225343-88225362 MS.gene41622:intron 70.0%
CGGGCCTAATGGCATGGCCG+TGG + chr3.4:88225363-88225382 None:intergenic 70.0%
GTGTGTGTGTGTGGGGGGGG+GGG + chr3.4:88225324-88225343 None:intergenic 70.0%
TGGCATGGCCGTGGAGGAGG+GGG + chr3.4:88225354-88225373 None:intergenic 70.0%
TGTGTGTGTGTGGGGGGGGG+GGG + chr3.4:88225323-88225342 None:intergenic 70.0%
! TGCGGCGGTGGTGGTGCCTA+GGG + chr3.4:88224178-88224197 None:intergenic 70.0%
! TTGCGGCGGTGGTGGTGCCT+AGG + chr3.4:88224179-88224198 None:intergenic 70.0%
!! CGGCGGAATTGGAGCGTCGG+AGG + chr3.4:88223995-88224014 None:intergenic 70.0%
!! GAGCGTCGGAGGCTGTGGAG+TGG + chr3.4:88223984-88224003 None:intergenic 70.0%
GCATGGCCGTGGAGGAGGGG+GGG + chr3.4:88225352-88225371 None:intergenic 75.0%
GGCATGGCCGTGGAGGAGGG+GGG + chr3.4:88225353-88225372 None:intergenic 75.0%
GTGTGTGTGTGGGGGGGGGG+GGG + chr3.4:88225322-88225341 None:intergenic 75.0%
TGTGTGTGTGGGGGGGGGGG+GGG + chr3.4:88225321-88225340 None:intergenic 75.0%
! GTGTGTGTGGGGGGGGGGGG+GGG + chr3.4:88225320-88225339 None:intergenic 80.0%
! TGTGTGTGGGGGGGGGGGGG+GGG + chr3.4:88225319-88225338 None:intergenic 80.0%
! GTGTGTGGGGGGGGGGGGGG+GGG + chr3.4:88225318-88225337 None:intergenic 85.0%
! TGTGTGGGGGGGGGGGGGGG+GGG + chr3.4:88225317-88225336 None:intergenic 85.0%
! GTGTGGGGGGGGGGGGGGGG+GGG + chr3.4:88225316-88225335 None:intergenic 90.0%
! TGTGGGGGGGGGGGGGGGGG+GGG + chr3.4:88225315-88225334 None:intergenic 90.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr3.4:88225314-88225333 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr3.4:88225313-88225332 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 88223967 88227956 88223967 ID=MS.gene41622
chr3.4 mRNA 88223967 88227956 88223967 ID=MS.gene41622.t1;Parent=MS.gene41622
chr3.4 exon 88226978 88227956 88226978 ID=MS.gene41622.t1.exon1;Parent=MS.gene41622.t1
chr3.4 CDS 88226978 88227956 88226978 ID=cds.MS.gene41622.t1;Parent=MS.gene41622.t1
chr3.4 exon 88224835 88225007 88224835 ID=MS.gene41622.t1.exon2;Parent=MS.gene41622.t1
chr3.4 CDS 88224835 88225007 88224835 ID=cds.MS.gene41622.t1;Parent=MS.gene41622.t1
chr3.4 exon 88223967 88224749 88223967 ID=MS.gene41622.t1.exon3;Parent=MS.gene41622.t1
chr3.4 CDS 88223967 88224749 88223967 ID=cds.MS.gene41622.t1;Parent=MS.gene41622.t1
Gene Sequence

>MS.gene41622

ATGGAAGAAAATAACCACTCCACAGCCTCCGACGCTCCAATTCCGCCGGAAAACCAACACGACGCCGGCGCCAATATTTCGAAATCGGTGAATGAACTCAACGATTTGTCAATTTCAATTCAAGCTTTCAAAAACAGGTACGATGAACTTCAAAATCATCTCAATTTCATTCAACACGCCATCGAAACCAGAACCAAAGAACTCGAAGCCCTAGGCACCACCACCGCCGCAAATGTGGTCACCGATAACGGTAACATTGTTCCATCTGAACCAGAATCGAAACCGAAATCAATTGCTGATGGCGAAGAAATAGAAGAAGAAGATCCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCCGGAAGAAGAAGAAGAGGAGGTAGAAGAAGAAGTAGAAGAGGTTGAAGAAGAAGTGAAAAAAGAAGAACAACAAGAACAAAAAGAAGAAGAAAAAGGTGAGCCTCACTCGCTGTGCAAAACGATGAATAGCCGTGGTTTGCGAAAGTATATACTTACGCATCTATCTGAAACGCCGTCGCTTAAGGAAAAAATCCCGGTGGCACTGAAAAAGGCGCCGGAACCGGCAAAATTGGTGTTTGAATGCATTGGTAGATTTTACCTTCAAGGAAGCAAAGCCTATACAACAAACTCACCGATGATTACTGCGAGGCAAGCTTCAATTTTGGTTTTGGAATACTATCTGATGTCTGGCTGTGTTGAAAGTGAAGCAAAAATGGAACGTAAACTGAAGGCAGAAGCTGCAGATGCAGCGGGTGCATGGAGGAAGAGACTCGTTGTTGAAGGTGGTGTGGCTATGGCAAGTGAAATGGATGCAAGAGGTTTGACTCTTTTTCTTGCGTGCTTTGGGATTCATGGTGTTTTTAGGAATGAGGATATTGCCAACTTGGTTCGTTTGAGCAAACCTGGAGAAATCTCGCACCTTCTTCGCGTTTCTGGGAGCCTTTCTAGCAGGGTTTCAGGTATGTATTGTATACATGCCTTTGGGAATGTAGGATATATAATACTCATGGTTATGCTTGATCGTTTTACCTGTACAATTTGAAATTTGTGATTGTGATCAGTGAAATAAGCTAGGGCATTTCATTCAAGTAAAAGTCAGAACACTGAAAACAAACTCTTTCGTGTTGAGACTTGAATGAAAACTCTTATGTAAGATGGAATCCATACTGTTGGTTTGTTTTTCATATTTTATGAAACAAGACTCTCTGTTACCAGCCTACTAACATCAGGTTCGAAATAAGTATGAGGGGACTTTCATGACACATAATTATTCAATTTTAATCATGGTCTATGCCGTCAATAGCGTGATACAGTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACACACACACACACACCCCCCCTCCTCCACGGCCATGCCATTAGGCCCGTGAATCACCTTTAGAGTAGCGGTGCAATTGTGGCGCCATACTCGGTTTGATGGCCGCTATTGCAATTTTGGGGAAAATCCTGTAAAACCCCTAATTTTTGAAACTTTTTAAAATTTGTTGACGGTATATTGGTCCCCCTTTGAGTGACCTAAAATTGTAACCCACGTGTTTGATCATTCAATTGTGGCCTCTCTCCATCGTCGTGCCCTCGTTCTTCTCTGCTCTCGTTTCACTATTTCTTTGCTTTGCTCGAGTTCTGCTTTGTTGCCTTGCTCTCGTTTGAGTTCTTCTCTGTTTCCTGCTCTGCTGGCATTGTTGTTCTCCTTGATCGTTCAATTGTGGCCTCTTGTTCGTGCTCTGTTTTGTGTTCTGCTGCCATCGTTGCTCTGTTTAGGGTTAGGGTTTGTGCTTCTTCTGCGTGTTCTGTTTGCCTTATTCTTGCTCTGTTCTGTTTGCTCTGATATGTTTGTAAGAGCAATGGCATCATCCTCCGGTTCTGCAAGTGTACCTTTAGAACGTGACTTTAATGGAATGCTATTTAGATTACATTTTGAACTTGATTTTGATGGGATGTCATTTTGATTACATTTAGAACTTATTTTGATGGGAATTGACAAAGTTAATTATAATTATTAAGTATGATTGTACCTTTAATTTTGTGTATATTTCTATTTTTGAGTATGTATGTATTCTGCTGGAATATTTATATTTACTTTGCACATTGTTTTTTAGTCTTCACAGCACCGGCGATCCCGCTATCCGCTATAACATTTTTGGGGTCGGCGCTACATGCCACTATCTAAGATTAACAACATTGATTATGCTGATGTTGTATTGATTGTTACATATATGATATCAGTCCTCCTTTTTGGGCATAAATAAATATCTCATAAATGCCCACCTGTTATTTCTGAGCCCGATTCATATTTTGGCTATAAATTACACTCCCCACTAACCATTTGTCGCAGACCATTTATTTAAGGTCAACTGAGACAGTTCCCTGTGTATAGCATACTGTTGTATTGTCTTAGGCTGGTAGCTGCTTATCGTAAAATTGATGCTATATCCTCTCAAATAATCTATTTCAGTGACCTTTTTAAGCAATTGCATGGTTCTGCAGTTTATGGTGGGTTTAGAGTCTATTCAATAGCTTAATCTAAAAGGAGGAAAAAATGCTTTGGTCGTGTTTATTTTATTAAAATGAAGAAACTAAGATGAAAAGTTTCCTTGCCAAGATTCCCCCTTTATATCTGATCATTTGCTCAATTCATGTATGATGTATCTACGTTTTGGAATGCCTTCTCATGTTATTCAAACTCTAGTACCTAACCACCCCTAGACATGTTTCCAACCATAACTAACTGAACTGGCATCCAACTATCTGATTGTACCCCTATTCCTGTTTATTCTTCTGAATCCTATCACACACCCTTAATGATTGTATGAATGCCTTTTGCTTTCTCATATTTTTGCTTTCTCATATTTTGAAACATAAGTTTTTCTTAATGTCACTGATTATTGTTTTGGCCGCAGATATTGCTCAGGGAATGATGAAAAAGGGCAAAGTTGTTGAAGCCCTTGACTTGGCTTATACCTTTGGGTTTGAAGAGAAATTTTCTCCCCAGACAGTACTGAATTCATTTCTACAAAAGTCTAATGAAGTTTGGAAGAAAGCAAAACAAGCACGTGATGTTCCTAGTTTGCTGGTATGTTCCAATTAAGTAGCTAATTTTGTTTTTTGTTACGCTTCATAAAGGACATTGATATTTATTATATATTGATCTTTGACAGAATAAAGCAAATGGAAAATATTTATCTGATTTGAAATCGGTTGTCAACTGTTTGGAAGGTCACAAAGTTGATTTTGCAAAACTTCTTCCTGATTGGAAACTTAAGGATACAATTCTCAAATTGGAGAAAGATATTCGTGATGTCACTGGAAAAATTGAAGACAATTCAACGTCCAAGAGAAAATTGGACAAAAGCAGTGCATCAAAGAAAGTGAGTGTTCCAGACACAAAACGAACAAGGCACGCTGTGAGAGATCCTTATGTGGCATCACCTTCAGTAACTACCTTGCAAAGGCAAAGGATTGCTGGTCATATGGATGGCAGTTCATATGATAGTTCATTAACAGCACATTTTCTGGAGGGTAGATCCTATGGCTACCCAAATAATTATTCCACTGTAGCATCTGCTGCACAAATTGAATCTGTTTCAGGGTCATTACCCGAAGGTTATCTTGGAAGGGGAGTGTCAATTGGGGGAGCCATAGGTGGTCCACTTTCTGGCTATCAGAGTGATATGCCAATTGATAATGTTGGGACAACGCTGAATAGCAGTAGCTCTCTGTATAGTAGATTGCATAGTGTAGATGAAGGGGCATTATCTTACGGTAGATCAGTCGAGCCGAGTTTTGTAGGACAACCTTCATCGGCACGAGTAAATCATATGTATGGGAGAACATCTGCAGAAGGTTATGCAGGTTTGCCAGATCATCACTCTATTGGTGTTCCTAGTCACGGCGGAGGTTCTGATTTGTATAGCTTTGCTGATTCTGTATTCGATGTGTAG

Protein sequence

>MS.gene41622.t1

MEENNHSTASDAPIPPENQHDAGANISKSVNELNDLSISIQAFKNRYDELQNHLNFIQHAIETRTKELEALGTTTAANVVTDNGNIVPSEPESKPKSIADGEEIEEEDPEEEEEEEEEDPEEEEEEVEEEVEEVEEEVKKEEQQEQKEEEKGEPHSLCKTMNSRGLRKYILTHLSETPSLKEKIPVALKKAPEPAKLVFECIGRFYLQGSKAYTTNSPMITARQASILVLEYYLMSGCVESEAKMERKLKAEAADAAGAWRKRLVVEGGVAMASEMDARGLTLFLACFGIHGVFRNEDIANLVRLSKPGEISHLLRVSGSLSSRVSDIAQGMMKKGKVVEALDLAYTFGFEEKFSPQTVLNSFLQKSNEVWKKAKQARDVPSLLNKANGKYLSDLKSVVNCLEGHKVDFAKLLPDWKLKDTILKLEKDIRDVTGKIEDNSTSKRKLDKSSASKKVSVPDTKRTRHAVRDPYVASPSVTTLQRQRIAGHMDGSSYDSSLTAHFLEGRSYGYPNNYSTVASAAQIESVSGSLPEGYLGRGVSIGGAIGGPLSGYQSDMPIDNVGTTLNSSSSLYSRLHSVDEGALSYGRSVEPSFVGQPSSARVNHMYGRTSAEGYAGLPDHHSIGVPSHGGGSDLYSFADSVFDV