Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41622.t1 | XP_003602718.2 | 94.9 | 644 | 31 | 1 | 1 | 644 | 1 | 642 | 5.00E-307 | 1063.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41622.t1 | P0DH90 | 33.9 | 551 | 283 | 9 | 7 | 539 | 40 | 527 | 8.3e-69 | 263.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41622.t1 | G7J2Q4 | 94.9 | 644 | 31 | 1 | 1 | 644 | 1 | 642 | 3.6e-307 | 1063.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene41622 | 0.811603 | 6.45E-51 | -1.69E-46 |
MS.gene049159 | MS.gene41622 | 0.832346 | 9.96E-56 | -1.69E-46 |
MS.gene050689 | MS.gene41622 | 0.816268 | 6.04E-52 | -1.69E-46 |
MS.gene050815 | MS.gene41622 | 0.80192 | 7.17E-49 | -1.69E-46 |
MS.gene050941 | MS.gene41622 | 0.803386 | 3.57E-49 | -1.69E-46 |
MS.gene051328 | MS.gene41622 | 0.825898 | 3.65E-54 | -1.69E-46 |
MS.gene052012 | MS.gene41622 | 0.808216 | 3.45E-50 | -1.69E-46 |
MS.gene052516 | MS.gene41622 | 0.809817 | 1.57E-50 | -1.69E-46 |
MS.gene052863 | MS.gene41622 | 0.808234 | 3.42E-50 | -1.69E-46 |
MS.gene053008 | MS.gene41622 | 0.870828 | 1.09E-66 | -1.69E-46 |
MS.gene05517 | MS.gene41622 | 0.814697 | 1.35E-51 | -1.69E-46 |
MS.gene055623 | MS.gene41622 | 0.80592 | 1.06E-49 | -1.69E-46 |
MS.gene055926 | MS.gene41622 | 0.808824 | 2.56E-50 | -1.69E-46 |
MS.gene057140 | MS.gene41622 | 0.810774 | 9.75E-51 | -1.69E-46 |
MS.gene058646 | MS.gene41622 | 0.806123 | 9.58E-50 | -1.69E-46 |
MS.gene059283 | MS.gene41622 | 0.82238 | 2.44E-53 | -1.69E-46 |
MS.gene059842 | MS.gene41622 | 0.831707 | 1.43E-55 | -1.69E-46 |
MS.gene060296 | MS.gene41622 | 0.835216 | 1.91E-56 | -1.69E-46 |
MS.gene060802 | MS.gene41622 | 0.801991 | 6.93E-49 | -1.69E-46 |
MS.gene060803 | MS.gene41622 | 0.851297 | 9.73E-61 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41622.t1 | MTR_3g098290 | 93.789 | 644 | 38 | 1 | 1 | 644 | 1 | 642 | 0.0 | 1148 |
MS.gene41622.t1 | MTR_8g010170 | 26.715 | 277 | 194 | 6 | 157 | 427 | 175 | 448 | 3.81e-25 | 110 |
MS.gene41622.t1 | MTR_8g010160 | 25.806 | 279 | 194 | 7 | 157 | 427 | 175 | 448 | 1.31e-22 | 102 |
MS.gene41622.t1 | MTR_4g095080 | 23.040 | 421 | 270 | 10 | 44 | 427 | 36 | 439 | 4.72e-19 | 91.3 |
MS.gene41622.t1 | MTR_1g103710 | 25.568 | 352 | 208 | 10 | 127 | 464 | 106 | 417 | 1.27e-16 | 83.6 |
MS.gene41622.t1 | MTR_8g083500 | 22.738 | 409 | 266 | 11 | 26 | 428 | 17 | 381 | 4.53e-13 | 72.4 |
MS.gene41622.t1 | MTR_5g094400 | 22.807 | 285 | 194 | 7 | 156 | 435 | 127 | 390 | 3.03e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41622.t1 | AT4G00650 | 38.095 | 294 | 139 | 6 | 28 | 318 | 57 | 310 | 2.58e-54 | 188 |
MS.gene41622.t1 | AT5G48385 | 26.690 | 281 | 191 | 9 | 157 | 427 | 178 | 453 | 7.19e-22 | 100 |
MS.gene41622.t1 | AT3G22440 | 26.606 | 327 | 197 | 10 | 156 | 470 | 133 | 428 | 6.95e-15 | 78.2 |
MS.gene41622.t1 | AT4G14900 | 23.582 | 335 | 199 | 11 | 156 | 470 | 129 | 426 | 2.15e-12 | 70.5 |
Find 140 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGCACCTTCTTCGCGTTTC+TGG | -0.032627 | 3.4:-88227001 | MS.gene41622:CDS |
GCTACAGTGGAATAATTATT+TGG | 0.144942 | 3.4:+88224349 | None:intergenic |
GCACAAATTGAATCTGTTTC+AGG | 0.159070 | 3.4:-88224319 | MS.gene41622:CDS |
GCCATAGGTGGTCCACTTTC+TGG | 0.173688 | 3.4:-88224250 | MS.gene41622:CDS |
AGCCTTTCTAGCAGGGTTTC+AGG | 0.173796 | 3.4:-88226977 | MS.gene41622:intron |
ATTGATTTCGGTTTCGATTC+TGG | 0.251239 | 3.4:+88227664 | None:intergenic |
GGCGCCGGAACCGGCAAAAT+TGG | 0.253876 | 3.4:-88227365 | MS.gene41622:CDS |
TGCTCAGGGAATGATGAAAA+AGG | 0.258464 | 3.4:-88224981 | MS.gene41622:CDS |
TAAGGATACAATTCTCAAAT+TGG | 0.261873 | 3.4:-88224626 | MS.gene41622:CDS |
CGCACCTTCTTCGCGTTTCT+GGG | 0.272371 | 3.4:-88227000 | MS.gene41622:CDS |
CTTGACTTGGCTTATACCTT+TGG | 0.275542 | 3.4:-88224941 | MS.gene41622:CDS |
AATCCCGGTGGCACTGAAAA+AGG | 0.281228 | 3.4:-88227386 | MS.gene41622:CDS |
ACCTCCTCTTCTTCTTCTTC+CGG | 0.282624 | 3.4:+88227577 | None:intergenic |
GCCTAGGGCTTCGAGTTCTT+TGG | 0.284004 | 3.4:+88227741 | None:intergenic |
TGCGAGGCAAGCTTCAATTT+TGG | 0.288687 | 3.4:-88227272 | MS.gene41622:CDS |
TACAAAAGTCTAATGAAGTT+TGG | 0.294234 | 3.4:-88224874 | MS.gene41622:CDS |
CTTGCGTGCTTTGGGATTCA+TGG | 0.299912 | 3.4:-88227082 | MS.gene41622:CDS |
ATTCACCGATTTCGAAATAT+TGG | 0.300429 | 3.4:+88227864 | None:intergenic |
GGCTTCGAGTTCTTTGGTTC+TGG | 0.307735 | 3.4:+88227747 | None:intergenic |
CATCGGTGAGTTTGTTGTAT+AGG | 0.312668 | 3.4:+88227300 | None:intergenic |
TTCAACGTCCAAGAGAAAAT+TGG | 0.328833 | 3.4:-88224563 | MS.gene41622:CDS |
ATCTGAAACGCCGTCGCTTA+AGG | 0.331700 | 3.4:-88227413 | MS.gene41622:CDS |
TTGCAAAACTTCTTCCTGAT+TGG | 0.331985 | 3.4:-88224654 | MS.gene41622:CDS |
TCTTCCTGATTGGAAACTTA+AGG | 0.339306 | 3.4:-88224644 | MS.gene41622:CDS |
TTGACTTGGCTTATACCTTT+GGG | 0.342599 | 3.4:-88224940 | MS.gene41622:CDS |
CTTGGAAGGGGAGTGTCAAT+TGG | 0.364900 | 3.4:-88224277 | MS.gene41622:CDS |
TCGCCATCAGCAATTGATTT+CGG | 0.368516 | 3.4:+88227652 | None:intergenic |
TGGAACAATGTTACCGTTAT+CGG | 0.374770 | 3.4:+88227693 | None:intergenic |
TTGCGGCGGTGGTGGTGCCT+AGG | 0.376894 | 3.4:+88227725 | None:intergenic |
TTGCCAGATCATCACTCTAT+TGG | 0.377011 | 3.4:-88224031 | MS.gene41622:CDS |
TTGGAAGGGGAGTGTCAATT+GGG | 0.377474 | 3.4:-88224276 | MS.gene41622:CDS |
ACGTGATGTTCCTAGTTTGC+TGG | 0.396679 | 3.4:-88224834 | MS.gene41622:intron |
TCCCCTTCCAAGATAACCTT+CGG | 0.397061 | 3.4:+88224288 | None:intergenic |
TTGCAAAGGCAAAGGATTGC+TGG | 0.398329 | 3.4:-88224442 | MS.gene41622:CDS |
TCATTACCCGAAGGTTATCT+TGG | 0.398870 | 3.4:-88224295 | MS.gene41622:CDS |
GCACGAGTAAATCATATGTA+TGG | 0.400182 | 3.4:-88224082 | MS.gene41622:CDS |
GCAAAGGATTGCTGGTCATA+TGG | 0.409083 | 3.4:-88224434 | MS.gene41622:CDS |
CTACAGTGGAATAATTATTT+GGG | 0.411267 | 3.4:+88224350 | None:intergenic |
TTGGAATACTATCTGATGTC+TGG | 0.411562 | 3.4:-88227247 | MS.gene41622:CDS |
TTTCTGGGAGCCTTTCTAGC+AGG | 0.411656 | 3.4:-88226985 | MS.gene41622:CDS |
ATATTTATCTGATTTGAAAT+CGG | 0.414588 | 3.4:-88224710 | MS.gene41622:CDS |
GAAATGAATTCAGTACTGTC+TGG | 0.423324 | 3.4:+88224897 | None:intergenic |
GCAGAAGCTGCAGATGCAGC+GGG | 0.429489 | 3.4:-88227184 | MS.gene41622:CDS |
TATAGGCTTTGCTTCCTTGA+AGG | 0.429956 | 3.4:+88227317 | None:intergenic |
AATTGGAGCGTCGGAGGCTG+TGG | 0.434220 | 3.4:+88227915 | None:intergenic |
TTCTTTGGTTCTGGTTTCGA+TGG | 0.437893 | 3.4:+88227756 | None:intergenic |
GAAATCGGTTGTCAACTGTT+TGG | 0.439288 | 3.4:-88224695 | MS.gene41622:CDS |
GTTGTCCCAACATTATCAAT+TGG | 0.451819 | 3.4:+88224211 | None:intergenic |
AGAAGGTGCGAGATTTCTCC+AGG | 0.452247 | 3.4:+88227013 | None:intergenic |
CACAAATTGAATCTGTTTCA+GGG | 0.454248 | 3.4:-88224318 | MS.gene41622:CDS |
TTGGTTCGTTTGAGCAAACC+TGG | 0.457585 | 3.4:-88227031 | MS.gene41622:CDS |
CTGCAGATGCAGCGGGTGCA+TGG | 0.460899 | 3.4:-88227177 | MS.gene41622:CDS |
GTATCCTTAAGTTTCCAATC+AGG | 0.461156 | 3.4:+88224640 | None:intergenic |
GAATGAGGATATTGCCAACT+TGG | 0.462459 | 3.4:-88227050 | MS.gene41622:CDS |
CTTTGACAGAATAAAGCAAA+TGG | 0.469866 | 3.4:-88224736 | MS.gene41622:intron |
TTCTGGGAGCCTTTCTAGCA+GGG | 0.472211 | 3.4:-88226984 | MS.gene41622:CDS |
CGGCGCCAATATTTCGAAAT+CGG | 0.472556 | 3.4:-88227869 | MS.gene41622:CDS |
GCAAATGTGGTCACCGATAA+CGG | 0.474173 | 3.4:-88227706 | MS.gene41622:CDS |
TGCGGCGGTGGTGGTGCCTA+GGG | 0.474709 | 3.4:+88227726 | None:intergenic |
TTTCTGGAGGGTAGATCCTA+TGG | 0.476468 | 3.4:-88224376 | MS.gene41622:CDS |
TTGGAACATACCAGCAAACT+AGG | 0.480824 | 3.4:+88224824 | None:intergenic |
GGTGACCACATTTGCGGCGG+TGG | 0.481971 | 3.4:+88227714 | None:intergenic |
TGTGGCTATGGCAAGTGAAA+TGG | 0.488446 | 3.4:-88227128 | MS.gene41622:CDS |
CCCCTTCCAAGATAACCTTC+GGG | 0.489106 | 3.4:+88224289 | None:intergenic |
GCCAGAAAGTGGACCACCTA+TGG | 0.489341 | 3.4:+88224249 | None:intergenic |
AAAGATATTCGTGATGTCAC+TGG | 0.492624 | 3.4:-88224601 | MS.gene41622:CDS |
TATTGGCGCCGGCGTCGTGT+TGG | 0.494195 | 3.4:+88227881 | None:intergenic |
AGTTGTTGAAGCCCTTGACT+TGG | 0.495531 | 3.4:-88224954 | MS.gene41622:CDS |
TACCCGAAGGTTATCTTGGA+AGG | 0.496100 | 3.4:-88224291 | MS.gene41622:CDS |
GGTAGAAGAAGAAGTAGAAG+AGG | 0.496378 | 3.4:-88227557 | MS.gene41622:CDS |
TACCTGAAACCCTGCTAGAA+AGG | 0.500118 | 3.4:+88226975 | None:intergenic |
GACCACATTTGCGGCGGTGG+TGG | 0.501591 | 3.4:+88227717 | None:intergenic |
ACACCAATAGAGTGATGATC+TGG | 0.505806 | 3.4:+88224028 | None:intergenic |
TGATTTACTCGTGCCGATGA+AGG | 0.505880 | 3.4:+88224091 | None:intergenic |
TTTGGCCGCAGATATTGCTC+AGG | 0.505908 | 3.4:-88224996 | MS.gene41622:intron |
ACTGAAGGTGATGCCACATA+AGG | 0.506366 | 3.4:+88224472 | None:intergenic |
AAATGAATTCAGTACTGTCT+GGG | 0.506777 | 3.4:+88224898 | None:intergenic |
GGCTCCCAGAAACGCGAAGA+AGG | 0.514592 | 3.4:+88226996 | None:intergenic |
GTTATCGGTGACCACATTTG+CGG | 0.521066 | 3.4:+88227708 | None:intergenic |
TCACTCTGATAGCCAGAAAG+TGG | 0.522292 | 3.4:+88224238 | None:intergenic |
GATGAAGGGGCATTATCTTA+CGG | 0.524968 | 3.4:-88224145 | MS.gene41622:CDS |
AGGAAGAGACTCGTTGTTGA+AGG | 0.526162 | 3.4:-88227154 | MS.gene41622:CDS |
GGTTTCGATTCTGGTTCAGA+TGG | 0.528247 | 3.4:+88227673 | None:intergenic |
ACATCTGCAGAAGGTTATGC+AGG | 0.529507 | 3.4:-88224055 | MS.gene41622:CDS |
CCCGAAGGTTATCTTGGAAG+GGG | 0.529987 | 3.4:-88224289 | MS.gene41622:CDS |
AGATTGCATAGTGTAGATGA+AGG | 0.531493 | 3.4:-88224160 | MS.gene41622:CDS |
TGTTGAAGGTGGTGTGGCTA+TGG | 0.532741 | 3.4:-88227140 | MS.gene41622:CDS |
CGGCGGAATTGGAGCGTCGG+AGG | 0.537861 | 3.4:+88227909 | None:intergenic |
GGCAGAAGCTGCAGATGCAG+CGG | 0.539070 | 3.4:-88227185 | MS.gene41622:CDS |
ATAATTATTTGGGTAGCCAT+AGG | 0.541652 | 3.4:+88224360 | None:intergenic |
CGATTTCGAAATATTGGCGC+CGG | 0.545993 | 3.4:+88227870 | None:intergenic |
CTCCGACGCTCCAATTCCGC+CGG | 0.546387 | 3.4:-88227908 | MS.gene41622:CDS |
TTCCGGCGGAATTGGAGCGT+CGG | 0.547964 | 3.4:+88227906 | None:intergenic |
TCAGAACCTCCGCCGTGACT+AGG | 0.551721 | 3.4:+88224004 | None:intergenic |
ATATGCCAATTGATAATGTT+GGG | 0.551779 | 3.4:-88224216 | MS.gene41622:CDS |
GGTGTTCCTAGTCACGGCGG+AGG | 0.554778 | 3.4:-88224010 | MS.gene41622:CDS |
CTTTGCAAGGTAGTTACTGA+AGG | 0.554885 | 3.4:+88224457 | None:intergenic |
TCGGTTGTCAACTGTTTGGA+AGG | 0.557298 | 3.4:-88224691 | MS.gene41622:CDS |
ACCCGAAGGTTATCTTGGAA+GGG | 0.560476 | 3.4:-88224290 | MS.gene41622:CDS |
AGCAATCCTTTGCCTTTGCA+AGG | 0.561026 | 3.4:+88224444 | None:intergenic |
TTTGCTCAAACGAACCAAGT+TGG | 0.563876 | 3.4:+88227036 | None:intergenic |
CACGAGTAAATCATATGTAT+GGG | 0.568907 | 3.4:-88224081 | MS.gene41622:CDS |
AGATCCGGAAGAAGAAGAAG+AGG | 0.570044 | 3.4:-88227581 | MS.gene41622:CDS |
CAAAGGTATAAGCCAAGTCA+AGG | 0.575181 | 3.4:+88224942 | None:intergenic |
TCTATTGGTGTTCCTAGTCA+CGG | 0.581422 | 3.4:-88224016 | MS.gene41622:CDS |
CCGGAAAACCAACACGACGC+CGG | 0.582426 | 3.4:-88227889 | MS.gene41622:CDS |
TGGAAGGGGAGTGTCAATTG+GGG | 0.588303 | 3.4:-88224275 | MS.gene41622:CDS |
AGGATTGCTGGTCATATGGA+TGG | 0.590466 | 3.4:-88224430 | MS.gene41622:CDS |
CACCACCACCGCCGCAAATG+TGG | 0.597720 | 3.4:-88227719 | MS.gene41622:CDS |
AAACCGAAATCAATTGCTGA+TGG | 0.597725 | 3.4:-88227655 | MS.gene41622:CDS |
TCCGGAAGAAGAAGAAGAGG+AGG | 0.599057 | 3.4:-88227578 | MS.gene41622:CDS |
GATATGCCAATTGATAATGT+TGG | 0.599085 | 3.4:-88224217 | MS.gene41622:CDS |
CGCTGTGAGAGATCCTTATG+TGG | 0.599605 | 3.4:-88224485 | MS.gene41622:CDS |
GAAGGTTGTCCTACAAAACT+CGG | 0.601321 | 3.4:+88224109 | None:intergenic |
GCTTGCCTCGCAGTAATCAT+CGG | 0.602636 | 3.4:+88227283 | None:intergenic |
TAACTACCTTGCAAAGGCAA+AGG | 0.602902 | 3.4:-88224450 | MS.gene41622:CDS |
AAGAGACTCGTTGTTGAAGG+TGG | 0.604637 | 3.4:-88227151 | MS.gene41622:CDS |
TTGGCCGCAGATATTGCTCA+GGG | 0.605816 | 3.4:-88224995 | MS.gene41622:intron |
ATTGCATAGTGTAGATGAAG+GGG | 0.606146 | 3.4:-88224158 | MS.gene41622:CDS |
TTCCAGACACAAAACGAACA+AGG | 0.611479 | 3.4:-88224510 | MS.gene41622:CDS |
AAATTGGTGTTTGAATGCAT+TGG | 0.613256 | 3.4:-88227349 | MS.gene41622:CDS |
AAATTTCTCTTCAAACCCAA+AGG | 0.615925 | 3.4:+88224925 | None:intergenic |
GTTTCAGGGTCATTACCCGA+AGG | 0.622716 | 3.4:-88224304 | MS.gene41622:CDS |
GATTGCATAGTGTAGATGAA+GGG | 0.625547 | 3.4:-88224159 | MS.gene41622:CDS |
ACCAAAGAACTCGAAGCCCT+AGG | 0.627329 | 3.4:-88227742 | MS.gene41622:CDS |
TATGGGAGAACATCTGCAGA+AGG | 0.633484 | 3.4:-88224064 | MS.gene41622:CDS |
ATCGGTGACCACATTTGCGG+CGG | 0.637660 | 3.4:+88227711 | None:intergenic |
GGAAGGGGAGTGTCAATTGG+GGG | 0.638432 | 3.4:-88224274 | MS.gene41622:CDS |
AAAGGTATAAGCCAAGTCAA+GGG | 0.641496 | 3.4:+88224943 | None:intergenic |
TTGTGCAGCAGATGCTACAG+TGG | 0.649223 | 3.4:+88224336 | None:intergenic |
CTTCAGTAACTACCTTGCAA+AGG | 0.651442 | 3.4:-88224456 | MS.gene41622:CDS |
GCAAGTGAAATGGATGCAAG+AGG | 0.653741 | 3.4:-88227118 | MS.gene41622:CDS |
GAGCGTCGGAGGCTGTGGAG+TGG | 0.654775 | 3.4:+88227920 | None:intergenic |
GTATATACTTTCGCAAACCA+CGG | 0.657503 | 3.4:+88227446 | None:intergenic |
CAGATGCAGCGGGTGCATGG+AGG | 0.661767 | 3.4:-88227174 | MS.gene41622:CDS |
AATGAATTCAGTACTGTCTG+GGG | 0.662675 | 3.4:+88224899 | None:intergenic |
TGCAAAACGATGAATAGCCG+TGG | 0.664115 | 3.4:-88227463 | MS.gene41622:CDS |
ACTCGTTGTTGAAGGTGGTG+TGG | 0.682424 | 3.4:-88227146 | MS.gene41622:CDS |
ATTGGTGTTCCTAGTCACGG+CGG | 0.753888 | 3.4:-88224013 | MS.gene41622:CDS |
ACTCACCGATGATTACTGCG+AGG | 0.780604 | 3.4:-88227288 | MS.gene41622:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAAGTTTCAAAAATTA+GGG | + | chr3.4:88225474-88225493 | None:intergenic | 10.0% |
!! | TTTAAAAAGTTTCAAAAATT+AGG | + | chr3.4:88225475-88225494 | None:intergenic | 10.0% |
!!! | TAATTATTCAATTTTAATCA+TGG | - | chr3.4:88225251-88225270 | MS.gene41622:intron | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3.4:88225303-88225322 | None:intergenic | 100.0% |
!! | AGAAATATACACAAAATTAA+AGG | + | chr3.4:88226033-88226052 | None:intergenic | 15.0% |
!! | TAAAAAGTTTCAAAAATTAG+GGG | + | chr3.4:88225473-88225492 | None:intergenic | 15.0% |
!!! | AACTTTTTAAAATTTGTTGA+CGG | - | chr3.4:88225484-88225503 | MS.gene41622:intron | 15.0% |
!!! | ATATTTATCTGATTTGAAAT+CGG | - | chr3.4:88227191-88227210 | MS.gene41622:CDS | 15.0% |
!! | AACAAAATTAGCTACTTAAT+TGG | + | chr3.4:88227099-88227118 | None:intergenic | 20.0% |
!! | ATATTTATTTATGCCCAAAA+AGG | + | chr3.4:88226249-88226268 | None:intergenic | 20.0% |
!! | ATTCAATAGCTTAATCTAAA+AGG | - | chr3.4:88226524-88226543 | MS.gene41622:intron | 20.0% |
!! | TTTATAGCCAAAATATGAAT+CGG | + | chr3.4:88226302-88226321 | None:intergenic | 20.0% |
!!! | ACATTTAGAACTTATTTTGA+TGG | - | chr3.4:88225967-88225986 | MS.gene41622:intron | 20.0% |
!!! | ATTTTGAACTTGATTTTGAT+GGG | - | chr3.4:88225930-88225949 | MS.gene41622:intron | 20.0% |
!!! | CATTTAGAACTTATTTTGAT+GGG | - | chr3.4:88225968-88225987 | MS.gene41622:intron | 20.0% |
! | ACTGAAATAGATTATTTGAG+AGG | + | chr3.4:88226452-88226471 | None:intergenic | 25.0% |
! | AGCAAATGATCAGATATAAA+GGG | + | chr3.4:88226626-88226645 | None:intergenic | 25.0% |
! | ATGAAAACTCTTATGTAAGA+TGG | - | chr3.4:88225122-88225141 | MS.gene41622:intron | 25.0% |
! | ATGTTGTTAATCTTAGATAG+TGG | + | chr3.4:88226178-88226197 | None:intergenic | 25.0% |
! | CAAAAATATGAGAAAGCAAA+AGG | + | chr3.4:88226835-88226854 | None:intergenic | 25.0% |
! | CTACAGTGGAATAATTATTT+GGG | + | chr3.4:88227554-88227573 | None:intergenic | 25.0% |
! | GAACAAAAAGAAGAAGAAAA+AGG | - | chr3.4:88224399-88224418 | MS.gene41622:CDS | 25.0% |
! | TAAGGATACAATTCTCAAAT+TGG | - | chr3.4:88227275-88227294 | MS.gene41622:CDS | 25.0% |
! | TACAAAAGTCTAATGAAGTT+TGG | - | chr3.4:88227027-88227046 | MS.gene41622:CDS | 25.0% |
! | TCACAAATTTCAAATTGTAC+AGG | + | chr3.4:88225018-88225037 | None:intergenic | 25.0% |
! | TGTAGGATATATAATACTCA+TGG | - | chr3.4:88224974-88224993 | MS.gene41622:CDS | 25.0% |
! | TTATAGCCAAAATATGAATC+GGG | + | chr3.4:88226301-88226320 | None:intergenic | 25.0% |
!! | CATTTTGAACTTGATTTTGA+TGG | - | chr3.4:88225929-88225948 | MS.gene41622:intron | 25.0% |
!!! | AAAATTTGTTGACGGTATAT+TGG | - | chr3.4:88225492-88225511 | MS.gene41622:intron | 25.0% |
!!! | AATGTCACTGATTATTGTTT+TGG | - | chr3.4:88226887-88226906 | MS.gene41622:intron | 25.0% |
!!! | ATATGCCAATTGATAATGTT+GGG | - | chr3.4:88227685-88227704 | MS.gene41622:CDS | 25.0% |
!!! | TTTTTTGTTACGCTTCATAA+AGG | - | chr3.4:88227117-88227136 | MS.gene41622:CDS | 25.0% |
AAAAATGGAACGTAAACTGA+AGG | - | chr3.4:88224695-88224714 | MS.gene41622:CDS | 30.0% | |
AAAAGGAGGAAAAAATGCTT+TGG | - | chr3.4:88226541-88226560 | MS.gene41622:intron | 30.0% | |
AAATGAATTCAGTACTGTCT+GGG | + | chr3.4:88227006-88227025 | None:intergenic | 30.0% | |
AAATTTCTCTTCAAACCCAA+AGG | + | chr3.4:88226979-88226998 | None:intergenic | 30.0% | |
AACCATGCAATTGCTTAAAA+AGG | + | chr3.4:88226477-88226496 | None:intergenic | 30.0% | |
AATTGAATGATCAAACACGT+GGG | + | chr3.4:88225546-88225565 | None:intergenic | 30.0% | |
AGAAGAATAAACAGGAATAG+GGG | + | chr3.4:88226776-88226795 | None:intergenic | 30.0% | |
AGAGTTTGAATAACATGAGA+AGG | + | chr3.4:88226683-88226702 | None:intergenic | 30.0% | |
AGGCATTCATACAATCATTA+AGG | + | chr3.4:88226815-88226834 | None:intergenic | 30.0% | |
ATAATTATTTGGGTAGCCAT+AGG | + | chr3.4:88227544-88227563 | None:intergenic | 30.0% | |
ATGTATTGTATACATGCCTT+TGG | - | chr3.4:88224948-88224967 | MS.gene41622:CDS | 30.0% | |
CAAATGATCAGATATAAAGG+GGG | + | chr3.4:88226624-88226643 | None:intergenic | 30.0% | |
CAATAGCTTAATCTAAAAGG+AGG | - | chr3.4:88226527-88226546 | MS.gene41622:intron | 30.0% | |
CAATTCAAGCTTTCAAAAAC+AGG | - | chr3.4:88224082-88224101 | MS.gene41622:CDS | 30.0% | |
CACAAATTGAATCTGTTTCA+GGG | - | chr3.4:88227583-88227602 | MS.gene41622:CDS | 30.0% | |
CACGAGTAAATCATATGTAT+GGG | - | chr3.4:88227820-88227839 | MS.gene41622:CDS | 30.0% | |
CAGAAGAATAAACAGGAATA+GGG | + | chr3.4:88226777-88226796 | None:intergenic | 30.0% | |
CTCAGTTGACCTTAAATAAA+TGG | + | chr3.4:88226355-88226374 | None:intergenic | 30.0% | |
CTTTGACAGAATAAAGCAAA+TGG | - | chr3.4:88227165-88227184 | MS.gene41622:CDS | 30.0% | |
GAGCAAATGATCAGATATAA+AGG | + | chr3.4:88226627-88226646 | None:intergenic | 30.0% | |
GCAAATGATCAGATATAAAG+GGG | + | chr3.4:88226625-88226644 | None:intergenic | 30.0% | |
GCTACAGTGGAATAATTATT+TGG | + | chr3.4:88227555-88227574 | None:intergenic | 30.0% | |
GGCATTCATACAATCATTAA+GGG | + | chr3.4:88226814-88226833 | None:intergenic | 30.0% | |
TAGGATTCAGAAGAATAAAC+AGG | + | chr3.4:88226784-88226803 | None:intergenic | 30.0% | |
TATATATCCTACATTCCCAA+AGG | + | chr3.4:88224967-88224986 | None:intergenic | 30.0% | |
TCAGAAGAATAAACAGGAAT+AGG | + | chr3.4:88226778-88226797 | None:intergenic | 30.0% | |
TGAAAAACAAACCAACAGTA+TGG | + | chr3.4:88225151-88225170 | None:intergenic | 30.0% | |
TGATATGTTTGTAAGAGCAA+TGG | - | chr3.4:88225841-88225860 | MS.gene41622:intron | 30.0% | |
TGTATTGTATACATGCCTTT+GGG | - | chr3.4:88224949-88224968 | MS.gene41622:CDS | 30.0% | |
TGTTGAAAGTGAAGCAAAAA+TGG | - | chr3.4:88224680-88224699 | MS.gene41622:CDS | 30.0% | |
TTTATTTATGCCCAAAAAGG+AGG | + | chr3.4:88226246-88226265 | None:intergenic | 30.0% | |
! | AAATTGGTGTTTGAATGCAT+TGG | - | chr3.4:88224552-88224571 | MS.gene41622:CDS | 30.0% |
! | ATTGGTAGATTTTACCTTCA+AGG | - | chr3.4:88224570-88224589 | MS.gene41622:CDS | 30.0% |
! | CTATCCGCTATAACATTTTT+GGG | - | chr3.4:88226138-88226157 | MS.gene41622:intron | 30.0% |
! | TATCCGCTATAACATTTTTG+GGG | - | chr3.4:88226139-88226158 | MS.gene41622:intron | 30.0% |
! | TCAAAAATTAGGGGTTTTAC+AGG | + | chr3.4:88225464-88225483 | None:intergenic | 30.0% |
! | TGTATGATGTATCTACGTTT+TGG | - | chr3.4:88226653-88226672 | MS.gene41622:intron | 30.0% |
! | TTCATTAACAGCACATTTTC+TGG | - | chr3.4:88227509-88227528 | MS.gene41622:CDS | 30.0% |
!! | AAAAATGTTATAGCGGATAG+CGG | + | chr3.4:88226138-88226157 | None:intergenic | 30.0% |
!! | ACAATTTTAGGTCACTCAAA+GGG | + | chr3.4:88225521-88225540 | None:intergenic | 30.0% |
!! | ATTCACCGATTTCGAAATAT+TGG | + | chr3.4:88224040-88224059 | None:intergenic | 30.0% |
!! | GATATGCCAATTGATAATGT+TGG | - | chr3.4:88227684-88227703 | MS.gene41622:CDS | 30.0% |
!! | TACAATTTTAGGTCACTCAA+AGG | + | chr3.4:88225522-88225541 | None:intergenic | 30.0% |
AAACCGAAATCAATTGCTGA+TGG | - | chr3.4:88224246-88224265 | MS.gene41622:CDS | 35.0% | |
AAAGATATTCGTGATGTCAC+TGG | - | chr3.4:88227300-88227319 | MS.gene41622:CDS | 35.0% | |
AACAGAACAGAGCAAGAATA+AGG | + | chr3.4:88225816-88225835 | None:intergenic | 35.0% | |
AATAAATGGTCTGCGACAAA+TGG | + | chr3.4:88226341-88226360 | None:intergenic | 35.0% | |
AATGAATTCAGTACTGTCTG+GGG | + | chr3.4:88227005-88227024 | None:intergenic | 35.0% | |
ACAACAGTATGCTATACACA+GGG | + | chr3.4:88226384-88226403 | None:intergenic | 35.0% | |
AGAAGAAGAAGAAGAAGATC+CGG | - | chr3.4:88224305-88224324 | MS.gene41622:CDS | 35.0% | |
AGATTGCATAGTGTAGATGA+AGG | - | chr3.4:88227741-88227760 | MS.gene41622:CDS | 35.0% | |
AGGTTCGAAATAAGTATGAG+GGG | - | chr3.4:88225214-88225233 | MS.gene41622:intron | 35.0% | |
ATTGCATAGTGTAGATGAAG+GGG | - | chr3.4:88227743-88227762 | MS.gene41622:CDS | 35.0% | |
ATTTCGAACCTGATGTTAGT+AGG | + | chr3.4:88225205-88225224 | None:intergenic | 35.0% | |
CAATTGAATGATCAAACACG+TGG | + | chr3.4:88225547-88225566 | None:intergenic | 35.0% | |
CAGGTTCGAAATAAGTATGA+GGG | - | chr3.4:88225213-88225232 | MS.gene41622:intron | 35.0% | |
CCATTAAAGTCACGTTCTAA+AGG | + | chr3.4:88225893-88225912 | None:intergenic | 35.0% | |
CGTGTTTGATCATTCAATTG+TGG | - | chr3.4:88225547-88225566 | MS.gene41622:intron | 35.0% | |
GAAATGAATTCAGTACTGTC+TGG | + | chr3.4:88227007-88227026 | None:intergenic | 35.0% | |
GATTGCATAGTGTAGATGAA+GGG | - | chr3.4:88227742-88227761 | MS.gene41622:CDS | 35.0% | |
GCACAAATTGAATCTGTTTC+AGG | - | chr3.4:88227582-88227601 | MS.gene41622:CDS | 35.0% | |
GCACGAGTAAATCATATGTA+TGG | - | chr3.4:88227819-88227838 | MS.gene41622:CDS | 35.0% | |
GCATACTGTTGTATTGTCTT+AGG | - | chr3.4:88226392-88226411 | MS.gene41622:intron | 35.0% | |
GTATATACTTTCGCAAACCA+CGG | + | chr3.4:88224458-88224477 | None:intergenic | 35.0% | |
GTATCCTTAAGTTTCCAATC+AGG | + | chr3.4:88227264-88227283 | None:intergenic | 35.0% | |
GTGATCAGTGAAATAAGCTA+GGG | - | chr3.4:88225040-88225059 | MS.gene41622:intron | 35.0% | |
GTTGTCCCAACATTATCAAT+TGG | + | chr3.4:88227693-88227712 | None:intergenic | 35.0% | |
TAAGATGGAATCCATACTGT+TGG | - | chr3.4:88225137-88225156 | MS.gene41622:intron | 35.0% | |
TACAACAGTATGCTATACAC+AGG | + | chr3.4:88226385-88226404 | None:intergenic | 35.0% | |
TATGGTTGGAAACATGTCTA+GGG | + | chr3.4:88226719-88226738 | None:intergenic | 35.0% | |
TCAGGTTCGAAATAAGTATG+AGG | - | chr3.4:88225212-88225231 | MS.gene41622:intron | 35.0% | |
TCTTCCTGATTGGAAACTTA+AGG | - | chr3.4:88227257-88227276 | MS.gene41622:CDS | 35.0% | |
TCTTCTTCTTCTTCTTCTTC+AGG | + | chr3.4:88224294-88224313 | None:intergenic | 35.0% | |
TGAGTATGTATGTATTCTGC+TGG | - | chr3.4:88226058-88226077 | MS.gene41622:intron | 35.0% | |
TGGAACAATGTTACCGTTAT+CGG | + | chr3.4:88224211-88224230 | None:intergenic | 35.0% | |
TGTCGCAGACCATTTATTTA+AGG | - | chr3.4:88226343-88226362 | MS.gene41622:intron | 35.0% | |
TGTGATCAGTGAAATAAGCT+AGG | - | chr3.4:88225039-88225058 | MS.gene41622:intron | 35.0% | |
TTATGGTTGGAAACATGTCT+AGG | + | chr3.4:88226720-88226739 | None:intergenic | 35.0% | |
TTCAACGTCCAAGAGAAAAT+TGG | - | chr3.4:88227338-88227357 | MS.gene41622:CDS | 35.0% | |
TTGCAAAACTTCTTCCTGAT+TGG | - | chr3.4:88227247-88227266 | MS.gene41622:CDS | 35.0% | |
TTGGAATACTATCTGATGTC+TGG | - | chr3.4:88224654-88224673 | MS.gene41622:CDS | 35.0% | |
TTTCCCCAAAATTGCAATAG+CGG | + | chr3.4:88225439-88225458 | None:intergenic | 35.0% | |
! | AAAGGTATAAGCCAAGTCAA+GGG | + | chr3.4:88226961-88226980 | None:intergenic | 35.0% |
! | AATCATTAAGGGTGTGTGAT+AGG | + | chr3.4:88226803-88226822 | None:intergenic | 35.0% |
! | ATGATATCAGTCCTCCTTTT+TGG | - | chr3.4:88226232-88226251 | MS.gene41622:intron | 35.0% |
! | ATTAACAGCACATTTTCTGG+AGG | - | chr3.4:88227512-88227531 | MS.gene41622:CDS | 35.0% |
! | ATTGATTTCGGTTTCGATTC+TGG | + | chr3.4:88224240-88224259 | None:intergenic | 35.0% |
! | CATTCAAACACCAATTTTGC+CGG | + | chr3.4:88224549-88224568 | None:intergenic | 35.0% |
! | GCTATCCGCTATAACATTTT+TGG | - | chr3.4:88226137-88226156 | MS.gene41622:intron | 35.0% |
! | GCTTTTGTCCAATTTTCTCT+TGG | + | chr3.4:88227349-88227368 | None:intergenic | 35.0% |
! | TGATATCAGTCCTCCTTTTT+GGG | - | chr3.4:88226233-88226252 | MS.gene41622:intron | 35.0% |
! | TTAACAGCACATTTTCTGGA+GGG | - | chr3.4:88227513-88227532 | MS.gene41622:CDS | 35.0% |
! | TTGGGATTCATGGTGTTTTT+AGG | - | chr3.4:88224829-88224848 | MS.gene41622:intron | 35.0% |
! | TTTTGTAGGACAACCTTCAT+CGG | - | chr3.4:88227797-88227816 | MS.gene41622:CDS | 35.0% |
!! | AAAATGTTATAGCGGATAGC+GGG | + | chr3.4:88226137-88226156 | None:intergenic | 35.0% |
!! | AACACGTGGGTTACAATTTT+AGG | + | chr3.4:88225533-88225552 | None:intergenic | 35.0% |
!! | AATTTTAGGTCACTCAAAGG+GGG | + | chr3.4:88225519-88225538 | None:intergenic | 35.0% |
!! | CAATTTTAGGTCACTCAAAG+GGG | + | chr3.4:88225520-88225539 | None:intergenic | 35.0% |
!! | CCTTTAGAACGTGACTTTAA+TGG | - | chr3.4:88225890-88225909 | MS.gene41622:intron | 35.0% |
!! | GACCTTTTTAAGCAATTGCA+TGG | - | chr3.4:88226472-88226491 | MS.gene41622:intron | 35.0% |
!! | TTGACTTGGCTTATACCTTT+GGG | - | chr3.4:88226961-88226980 | MS.gene41622:intron | 35.0% |
!!! | GCAAGCTTCAATTTTGGTTT+TGG | - | chr3.4:88224635-88224654 | MS.gene41622:CDS | 35.0% |
!!! | TCATGGTGTTTTTAGGAATG+AGG | - | chr3.4:88224836-88224855 | MS.gene41622:CDS | 35.0% |
!!! | TTTTTTAGTCTTCACAGCAC+CGG | - | chr3.4:88226107-88226126 | MS.gene41622:intron | 35.0% |
ACACCAATAGAGTGATGATC+TGG | + | chr3.4:88227876-88227895 | None:intergenic | 40.0% | |
ACACTGTATCACGCTATTGA+CGG | + | chr3.4:88225283-88225302 | None:intergenic | 40.0% | |
ACTGTTGTATTGTCTTAGGC+TGG | - | chr3.4:88226396-88226415 | MS.gene41622:intron | 40.0% | |
ATGGTTGGAAACATGTCTAG+GGG | + | chr3.4:88226718-88226737 | None:intergenic | 40.0% | |
CAGATATAAAGGGGGAATCT+TGG | + | chr3.4:88226616-88226635 | None:intergenic | 40.0% | |
CCAACCATAACTAACTGAAC+TGG | - | chr3.4:88226730-88226749 | MS.gene41622:intron | 40.0% | |
CCAGTTCAGTTAGTTATGGT+TGG | + | chr3.4:88226733-88226752 | None:intergenic | 40.0% | |
CGACCCCAAAAATGTTATAG+CGG | + | chr3.4:88226145-88226164 | None:intergenic | 40.0% | |
CTTCAGTAACTACCTTGCAA+AGG | - | chr3.4:88227445-88227464 | MS.gene41622:CDS | 40.0% | |
CTTTGCAAGGTAGTTACTGA+AGG | + | chr3.4:88227447-88227466 | None:intergenic | 40.0% | |
GAAATCGGTTGTCAACTGTT+TGG | - | chr3.4:88227206-88227225 | MS.gene41622:CDS | 40.0% | |
GAAGGTTGTCCTACAAAACT+CGG | + | chr3.4:88227795-88227814 | None:intergenic | 40.0% | |
GAATGAGGATATTGCCAACT+TGG | - | chr3.4:88224851-88224870 | MS.gene41622:CDS | 40.0% | |
GATGCCAGTTCAGTTAGTTA+TGG | + | chr3.4:88226737-88226756 | None:intergenic | 40.0% | |
GCTCAGGGAATGATGAAAAA+GGG | - | chr3.4:88226921-88226940 | MS.gene41622:intron | 40.0% | |
GGTAGAAGAAGAAGTAGAAG+AGG | - | chr3.4:88224344-88224363 | MS.gene41622:CDS | 40.0% | |
GTCGCTTAAGGAAAAAATCC+CGG | - | chr3.4:88224500-88224519 | MS.gene41622:CDS | 40.0% | |
TAACTACCTTGCAAAGGCAA+AGG | - | chr3.4:88227451-88227470 | MS.gene41622:CDS | 40.0% | |
TATAGGCTTTGCTTCCTTGA+AGG | + | chr3.4:88224587-88224606 | None:intergenic | 40.0% | |
TCATTACCCGAAGGTTATCT+TGG | - | chr3.4:88227606-88227625 | MS.gene41622:CDS | 40.0% | |
TCTCCTTGATCGTTCAATTG+TGG | - | chr3.4:88225702-88225721 | MS.gene41622:intron | 40.0% | |
TGCTCAGGGAATGATGAAAA+AGG | - | chr3.4:88226920-88226939 | MS.gene41622:intron | 40.0% | |
TTCCAGACACAAAACGAACA+AGG | - | chr3.4:88227391-88227410 | MS.gene41622:CDS | 40.0% | |
TTGCCAGATCATCACTCTAT+TGG | - | chr3.4:88227870-88227889 | MS.gene41622:CDS | 40.0% | |
TTGGAACATACCAGCAAACT+AGG | + | chr3.4:88227080-88227099 | None:intergenic | 40.0% | |
TTTGCTCAAACGAACCAAGT+TGG | + | chr3.4:88224868-88224887 | None:intergenic | 40.0% | |
! | ACTCTTTTTCTTGCGTGCTT+TGG | - | chr3.4:88224810-88224829 | MS.gene41622:intron | 40.0% |
! | ATACATGCCTTTGGGAATGT+AGG | - | chr3.4:88224957-88224976 | MS.gene41622:CDS | 40.0% |
! | ATGGCCGCTATTGCAATTTT+GGG | - | chr3.4:88225432-88225451 | MS.gene41622:intron | 40.0% |
! | ATGGTTCTGCAGTTTATGGT+GGG | - | chr3.4:88226491-88226510 | MS.gene41622:intron | 40.0% |
! | CAAAGGTATAAGCCAAGTCA+AGG | + | chr3.4:88226962-88226981 | None:intergenic | 40.0% |
! | CTACTCTAAAGGTGATTCAC+GGG | + | chr3.4:88225382-88225401 | None:intergenic | 40.0% |
! | CTCTTTTTCTTGCGTGCTTT+GGG | - | chr3.4:88224811-88224830 | MS.gene41622:intron | 40.0% |
! | GCTACTCTAAAGGTGATTCA+CGG | + | chr3.4:88225383-88225402 | None:intergenic | 40.0% |
! | TAAAGGTACACTTGCAGAAC+CGG | + | chr3.4:88225876-88225895 | None:intergenic | 40.0% |
! | TAGGGGTACAATCAGATAGT+TGG | + | chr3.4:88226759-88226778 | None:intergenic | 40.0% |
! | TCGCCATCAGCAATTGATTT+CGG | + | chr3.4:88224252-88224271 | None:intergenic | 40.0% |
! | TCTATTGGTGTTCCTAGTCA+CGG | - | chr3.4:88227885-88227904 | MS.gene41622:CDS | 40.0% |
! | TCTGAGCCCGATTCATATTT+TGG | - | chr3.4:88226292-88226311 | MS.gene41622:intron | 40.0% |
! | TTGCATGGTTCTGCAGTTTA+TGG | - | chr3.4:88226487-88226506 | MS.gene41622:intron | 40.0% |
!! | CATCGGTGAGTTTGTTGTAT+AGG | + | chr3.4:88224604-88224623 | None:intergenic | 40.0% |
!! | CTTGACTTGGCTTATACCTT+TGG | - | chr3.4:88226960-88226979 | MS.gene41622:intron | 40.0% |
!! | GATGAAGGGGCATTATCTTA+CGG | - | chr3.4:88227756-88227775 | MS.gene41622:CDS | 40.0% |
!! | GTGAATCACCTTTAGAGTAG+CGG | - | chr3.4:88225382-88225401 | MS.gene41622:intron | 40.0% |
!! | TTCTTTGGTTCTGGTTTCGA+TGG | + | chr3.4:88224148-88224167 | None:intergenic | 40.0% |
!!! | CGCTATAACATTTTTGGGGT+CGG | - | chr3.4:88226143-88226162 | MS.gene41622:intron | 40.0% |
!!! | GGGATTTTTTCCTTAAGCGA+CGG | + | chr3.4:88224501-88224520 | None:intergenic | 40.0% |
AAACATGTCTAGGGGTGGTT+AGG | + | chr3.4:88226710-88226729 | None:intergenic | 45.0% | |
AACCCTAAACAGAGCAACGA+TGG | + | chr3.4:88225761-88225780 | None:intergenic | 45.0% | |
AAGAGACTCGTTGTTGAAGG+TGG | - | chr3.4:88224750-88224769 | MS.gene41622:intron | 45.0% | |
ACATCTGCAGAAGGTTATGC+AGG | - | chr3.4:88227846-88227865 | MS.gene41622:CDS | 45.0% | |
ACCCGAAGGTTATCTTGGAA+GGG | - | chr3.4:88227611-88227630 | MS.gene41622:CDS | 45.0% | |
ACCTCCTCTTCTTCTTCTTC+CGG | + | chr3.4:88224327-88224346 | None:intergenic | 45.0% | |
ACTGAAGGTGATGCCACATA+AGG | + | chr3.4:88227432-88227451 | None:intergenic | 45.0% | |
AGATCCGGAAGAAGAAGAAG+AGG | - | chr3.4:88224320-88224339 | MS.gene41622:CDS | 45.0% | |
AGCAATCCTTTGCCTTTGCA+AGG | + | chr3.4:88227460-88227479 | None:intergenic | 45.0% | |
AGGAAGAGACTCGTTGTTGA+AGG | - | chr3.4:88224747-88224766 | MS.gene41622:intron | 45.0% | |
AGGATTGCTGGTCATATGGA+TGG | - | chr3.4:88227471-88227490 | MS.gene41622:CDS | 45.0% | |
AGGCCACAATTGAACGATCA+AGG | + | chr3.4:88225708-88225727 | None:intergenic | 45.0% | |
AGTTGTTGAAGCCCTTGACT+TGG | - | chr3.4:88226947-88226966 | MS.gene41622:intron | 45.0% | |
ATAAAGGGGGAATCTTGGCA+AGG | + | chr3.4:88226611-88226630 | None:intergenic | 45.0% | |
CAAAACAGAGCACGAACAAG+AGG | + | chr3.4:88225728-88225747 | None:intergenic | 45.0% | |
CAATTGCACCGCTACTCTAA+AGG | + | chr3.4:88225393-88225412 | None:intergenic | 45.0% | |
CATTCCCTGAGCAATATCTG+CGG | + | chr3.4:88226913-88226932 | None:intergenic | 45.0% | |
CGATTTCGAAATATTGGCGC+CGG | + | chr3.4:88224034-88224053 | None:intergenic | 45.0% | |
CGGCGCCAATATTTCGAAAT+CGG | - | chr3.4:88224032-88224051 | MS.gene41622:CDS | 45.0% | |
GAAGAACTCAAACGAGAGCA+AGG | + | chr3.4:88225653-88225672 | None:intergenic | 45.0% | |
GAATCGGGCTCAGAAATAAC+AGG | + | chr3.4:88226286-88226305 | None:intergenic | 45.0% | |
GCAAAGGATTGCTGGTCATA+TGG | - | chr3.4:88227467-88227486 | MS.gene41622:CDS | 45.0% | |
GCAAATGTGGTCACCGATAA+CGG | - | chr3.4:88224195-88224214 | MS.gene41622:CDS | 45.0% | |
GCAAGTGAAATGGATGCAAG+AGG | - | chr3.4:88224783-88224802 | MS.gene41622:intron | 45.0% | |
GCTTAAGGAAAAAATCCCGG+TGG | - | chr3.4:88224503-88224522 | MS.gene41622:CDS | 45.0% | |
GTCTGCGACAAATGGTTAGT+GGG | + | chr3.4:88226333-88226352 | None:intergenic | 45.0% | |
GTTACCAGCCTACTAACATC+AGG | - | chr3.4:88225194-88225213 | MS.gene41622:intron | 45.0% | |
GTTATCGGTGACCACATTTG+CGG | + | chr3.4:88224196-88224215 | None:intergenic | 45.0% | |
TACCCGAAGGTTATCTTGGA+AGG | - | chr3.4:88227610-88227629 | MS.gene41622:CDS | 45.0% | |
TACCTGAAACCCTGCTAGAA+AGG | + | chr3.4:88224929-88224948 | None:intergenic | 45.0% | |
TATGGGAGAACATCTGCAGA+AGG | - | chr3.4:88227837-88227856 | MS.gene41622:CDS | 45.0% | |
TCACTCTGATAGCCAGAAAG+TGG | + | chr3.4:88227666-88227685 | None:intergenic | 45.0% | |
TCCCCTTCCAAGATAACCTT+CGG | + | chr3.4:88227616-88227635 | None:intergenic | 45.0% | |
TCGGTTGTCAACTGTTTGGA+AGG | - | chr3.4:88227210-88227229 | MS.gene41622:CDS | 45.0% | |
TCTGCGACAAATGGTTAGTG+GGG | + | chr3.4:88226332-88226351 | None:intergenic | 45.0% | |
TGCAAAACGATGAATAGCCG+TGG | - | chr3.4:88224438-88224457 | MS.gene41622:CDS | 45.0% | |
TGCCATCGTTGCTCTGTTTA+GGG | - | chr3.4:88225756-88225775 | MS.gene41622:intron | 45.0% | |
TGTGGCTATGGCAAGTGAAA+TGG | - | chr3.4:88224773-88224792 | MS.gene41622:intron | 45.0% | |
TTAGAGTAGCGGTGCAATTG+TGG | - | chr3.4:88225393-88225412 | MS.gene41622:intron | 45.0% | |
TTGCAAAGGCAAAGGATTGC+TGG | - | chr3.4:88227459-88227478 | MS.gene41622:CDS | 45.0% | |
! | ACGTGATGTTCCTAGTTTGC+TGG | - | chr3.4:88227067-88227086 | MS.gene41622:CDS | 45.0% |
! | CATGGTTCTGCAGTTTATGG+TGG | - | chr3.4:88226490-88226509 | MS.gene41622:intron | 45.0% |
! | CGTTGCTCTGTTTAGGGTTA+GGG | - | chr3.4:88225762-88225781 | MS.gene41622:intron | 45.0% |
! | GATGGCCGCTATTGCAATTT+TGG | - | chr3.4:88225431-88225450 | MS.gene41622:intron | 45.0% |
! | TCGTTGCTCTGTTTAGGGTT+AGG | - | chr3.4:88225761-88225780 | MS.gene41622:intron | 45.0% |
! | TGATTTACTCGTGCCGATGA+AGG | + | chr3.4:88227813-88227832 | None:intergenic | 45.0% |
! | TGCGAGGCAAGCTTCAATTT+TGG | - | chr3.4:88224629-88224648 | MS.gene41622:CDS | 45.0% |
! | TGGCCGCTATTGCAATTTTG+GGG | - | chr3.4:88225433-88225452 | MS.gene41622:intron | 45.0% |
! | TTGGTTCGTTTGAGCAAACC+TGG | - | chr3.4:88224870-88224889 | MS.gene41622:CDS | 45.0% |
! | TTTCTGGAGGGTAGATCCTA+TGG | - | chr3.4:88227525-88227544 | MS.gene41622:CDS | 45.0% |
!! | GGTTTCGATTCTGGTTCAGA+TGG | + | chr3.4:88224231-88224250 | None:intergenic | 45.0% |
!! | TGCCTTGTTCGTTTTGTGTC+TGG | + | chr3.4:88227396-88227415 | None:intergenic | 45.0% |
!! | TTGGAAGGGGAGTGTCAATT+GGG | - | chr3.4:88227625-88227644 | MS.gene41622:CDS | 45.0% |
!!! | AACACCAATTTTGCCGGTTC+CGG | + | chr3.4:88224543-88224562 | None:intergenic | 45.0% |
AACAACAATGCCAGCAGAGC+AGG | + | chr3.4:88225683-88225702 | None:intergenic | 50.0% | |
AACGAGAGCAGAGAAGAACG+AGG | + | chr3.4:88225592-88225611 | None:intergenic | 50.0% | |
AAGGTGATTCACGGGCCTAA+TGG | + | chr3.4:88225374-88225393 | None:intergenic | 50.0% | |
ACCAAAGAACTCGAAGCCCT+AGG | - | chr3.4:88224159-88224178 | MS.gene41622:CDS | 50.0% | |
ACGAGAGCAGAGAAGAACGA+GGG | + | chr3.4:88225591-88225610 | None:intergenic | 50.0% | |
ACTCACCGATGATTACTGCG+AGG | - | chr3.4:88224613-88224632 | MS.gene41622:CDS | 50.0% | |
ACTCGTTGTTGAAGGTGGTG+TGG | - | chr3.4:88224755-88224774 | MS.gene41622:intron | 50.0% | |
AGAGCAATGGCATCATCCTC+CGG | - | chr3.4:88225854-88225873 | MS.gene41622:intron | 50.0% | |
CCCCTTCCAAGATAACCTTC+GGG | + | chr3.4:88227615-88227634 | None:intergenic | 50.0% | |
CCCGAAGGTTATCTTGGAAG+GGG | - | chr3.4:88227612-88227631 | MS.gene41622:CDS | 50.0% | |
CGAACCTGATGTTAGTAGGC+TGG | + | chr3.4:88225201-88225220 | None:intergenic | 50.0% | |
CGCTGTGAGAGATCCTTATG+TGG | - | chr3.4:88227416-88227435 | MS.gene41622:CDS | 50.0% | |
CGGGCTCAGAAATAACAGGT+GGG | + | chr3.4:88226282-88226301 | None:intergenic | 50.0% | |
CTGCCATCGTTGCTCTGTTT+AGG | - | chr3.4:88225755-88225774 | MS.gene41622:intron | 50.0% | |
GCTTGCCTCGCAGTAATCAT+CGG | + | chr3.4:88224621-88224640 | None:intergenic | 50.0% | |
GGTCTGCGACAAATGGTTAG+TGG | + | chr3.4:88226334-88226353 | None:intergenic | 50.0% | |
GTTGGAAACATGTCTAGGGG+TGG | + | chr3.4:88226715-88226734 | None:intergenic | 50.0% | |
GTTTCAGGGTCATTACCCGA+AGG | - | chr3.4:88227597-88227616 | MS.gene41622:CDS | 50.0% | |
TCCGGAAGAAGAAGAAGAGG+AGG | - | chr3.4:88224323-88224342 | MS.gene41622:CDS | 50.0% | |
TCGGGCTCAGAAATAACAGG+TGG | + | chr3.4:88226283-88226302 | None:intergenic | 50.0% | |
TGCAATTGTGGCGCCATACT+CGG | - | chr3.4:88225405-88225424 | MS.gene41622:intron | 50.0% | |
TGTTGAAGGTGGTGTGGCTA+TGG | - | chr3.4:88224761-88224780 | MS.gene41622:intron | 50.0% | |
TTCTCTGTTTCCTGCTCTGC+TGG | - | chr3.4:88225670-88225689 | MS.gene41622:intron | 50.0% | |
TTGGCCGCAGATATTGCTCA+GGG | - | chr3.4:88226906-88226925 | MS.gene41622:intron | 50.0% | |
TTGTGCAGCAGATGCTACAG+TGG | + | chr3.4:88227568-88227587 | None:intergenic | 50.0% | |
TTTGGCCGCAGATATTGCTC+AGG | - | chr3.4:88226905-88226924 | MS.gene41622:intron | 50.0% | |
! | AATCCCGGTGGCACTGAAAA+AGG | - | chr3.4:88224515-88224534 | MS.gene41622:CDS | 50.0% |
! | AGAAGGTGCGAGATTTCTCC+AGG | + | chr3.4:88224891-88224910 | None:intergenic | 50.0% |
! | AGCCTTTCTAGCAGGGTTTC+AGG | - | chr3.4:88224924-88224943 | MS.gene41622:CDS | 50.0% |
! | ATCGTTTTGCACAGCGAGTG+AGG | + | chr3.4:88224429-88224448 | None:intergenic | 50.0% |
! | ATCTGAAACGCCGTCGCTTA+AGG | - | chr3.4:88224488-88224507 | MS.gene41622:CDS | 50.0% |
! | ATTGGTGTTCCTAGTCACGG+CGG | - | chr3.4:88227888-88227907 | MS.gene41622:CDS | 50.0% |
! | GGCTTCGAGTTCTTTGGTTC+TGG | + | chr3.4:88224157-88224176 | None:intergenic | 50.0% |
! | TTCTGGGAGCCTTTCTAGCA+GGG | - | chr3.4:88224917-88224936 | MS.gene41622:CDS | 50.0% |
! | TTTCTGGGAGCCTTTCTAGC+AGG | - | chr3.4:88224916-88224935 | MS.gene41622:CDS | 50.0% |
!! | CTTGCGTGCTTTGGGATTCA+TGG | - | chr3.4:88224819-88224838 | MS.gene41622:intron | 50.0% |
!! | CTTGGAAGGGGAGTGTCAAT+TGG | - | chr3.4:88227624-88227643 | MS.gene41622:CDS | 50.0% |
!! | TCAGTCGAGCCGAGTTTTGT+AGG | - | chr3.4:88227783-88227802 | MS.gene41622:CDS | 50.0% |
!! | TGGAAGGGGAGTGTCAATTG+GGG | - | chr3.4:88227626-88227645 | MS.gene41622:CDS | 50.0% |
!!! | TGTTGGTTTTCCGGCGGAAT+TGG | + | chr3.4:88224006-88224025 | None:intergenic | 50.0% |
AGCGGCCATCAAACCGAGTA+TGG | + | chr3.4:88225421-88225440 | None:intergenic | 55.0% | |
AGGTACACTTGCAGAACCGG+AGG | + | chr3.4:88225873-88225892 | None:intergenic | 55.0% | |
ATCGGTGACCACATTTGCGG+CGG | + | chr3.4:88224193-88224212 | None:intergenic | 55.0% | |
CGCACCTTCTTCGCGTTTCT+GGG | - | chr3.4:88224901-88224920 | MS.gene41622:CDS | 55.0% | |
GATTCACGGGCCTAATGGCA+TGG | + | chr3.4:88225369-88225388 | None:intergenic | 55.0% | |
GCCAGAAAGTGGACCACCTA+TGG | + | chr3.4:88227655-88227674 | None:intergenic | 55.0% | |
GCCATAGGTGGTCCACTTTC+TGG | - | chr3.4:88227651-88227670 | MS.gene41622:CDS | 55.0% | |
GGGTGTGTGTGTGTGTGTGT+GGG | + | chr3.4:88225332-88225351 | None:intergenic | 55.0% | |
GGTGTGTGTGTGTGTGTGTG+GGG | + | chr3.4:88225331-88225350 | None:intergenic | 55.0% | |
GTGTCAATTGGGGGAGCCAT+AGG | - | chr3.4:88227636-88227655 | MS.gene41622:CDS | 55.0% | |
GTGTGTGTGTGTGTGTGTGG+GGG | + | chr3.4:88225330-88225349 | None:intergenic | 55.0% | |
TCAATTGGGGGAGCCATAGG+TGG | - | chr3.4:88227639-88227658 | MS.gene41622:CDS | 55.0% | |
TCGCACCTTCTTCGCGTTTC+TGG | - | chr3.4:88224900-88224919 | MS.gene41622:CDS | 55.0% | |
TGTGTGTGTGTGTGTGTGGG+GGG | + | chr3.4:88225329-88225348 | None:intergenic | 55.0% | |
! | GCCTAGGGCTTCGAGTTCTT+TGG | + | chr3.4:88224163-88224182 | None:intergenic | 55.0% |
! | TGGCGCCATACTCGGTTTGA+TGG | - | chr3.4:88225413-88225432 | MS.gene41622:intron | 55.0% |
!! | ACTGAAAAAGGCGCCGGAAC+CGG | - | chr3.4:88224527-88224546 | MS.gene41622:CDS | 55.0% |
!! | GGAAGGGGAGTGTCAATTGG+GGG | - | chr3.4:88227627-88227646 | MS.gene41622:CDS | 55.0% |
AATGGCATGGCCGTGGAGGA+GGG | + | chr3.4:88225356-88225375 | None:intergenic | 60.0% | |
CCGGAAAACCAACACGACGC+CGG | - | chr3.4:88224012-88224031 | MS.gene41622:CDS | 60.0% | |
GCAGAAGCTGCAGATGCAGC+GGG | - | chr3.4:88224717-88224736 | MS.gene41622:CDS | 60.0% | |
GGCAGAAGCTGCAGATGCAG+CGG | - | chr3.4:88224716-88224735 | MS.gene41622:CDS | 60.0% | |
GGCTCCCAGAAACGCGAAGA+AGG | + | chr3.4:88224908-88224927 | None:intergenic | 60.0% | |
GGGGTGTGTGTGTGTGTGTG+TGG | + | chr3.4:88225333-88225352 | None:intergenic | 60.0% | |
GTGTGTGTGTGTGTGTGGGG+GGG | + | chr3.4:88225328-88225347 | None:intergenic | 60.0% | |
TAATGGCATGGCCGTGGAGG+AGG | + | chr3.4:88225357-88225376 | None:intergenic | 60.0% | |
TCAGAACCTCCGCCGTGACT+AGG | + | chr3.4:88227900-88227919 | None:intergenic | 60.0% | |
TCCTCCACGGCCATGCCATT+AGG | - | chr3.4:88225356-88225375 | MS.gene41622:intron | 60.0% | |
TGTGTGTGTGTGTGTGGGGG+GGG | + | chr3.4:88225327-88225346 | None:intergenic | 60.0% | |
TTCCGGCGGAATTGGAGCGT+CGG | + | chr3.4:88223998-88224017 | None:intergenic | 60.0% | |
! | GAAGAACGAGGGCACGACGA+TGG | + | chr3.4:88225580-88225599 | None:intergenic | 60.0% |
! | GGTGGCACTGAAAAAGGCGC+CGG | - | chr3.4:88224521-88224540 | MS.gene41622:CDS | 60.0% |
!! | AATTGGAGCGTCGGAGGCTG+TGG | + | chr3.4:88223989-88224008 | None:intergenic | 60.0% |
!! | ATAGCGGATAGCGGGATCGC+CGG | + | chr3.4:88226129-88226148 | None:intergenic | 60.0% |
!!! | CCGGCGTCGTGTTGGTTTTC+CGG | + | chr3.4:88224015-88224034 | None:intergenic | 60.0% |
!!! | GCGCCTTTTTCAGTGCCACC+GGG | + | chr3.4:88224521-88224540 | None:intergenic | 60.0% |
!!! | GCGTCGTGTTGGTTTTCCGG+CGG | + | chr3.4:88224012-88224031 | None:intergenic | 60.0% |
!!! | GGCGCCTTTTTCAGTGCCAC+CGG | + | chr3.4:88224522-88224541 | None:intergenic | 60.0% |
ATGGCATGGCCGTGGAGGAG+GGG | + | chr3.4:88225355-88225374 | None:intergenic | 65.0% | |
CACCACCACCGCCGCAAATG+TGG | - | chr3.4:88224182-88224201 | MS.gene41622:CDS | 65.0% | |
CAGATGCAGCGGGTGCATGG+AGG | - | chr3.4:88224727-88224746 | MS.gene41622:CDS | 65.0% | |
CTCCGACGCTCCAATTCCGC+CGG | - | chr3.4:88223993-88224012 | MS.gene41622:CDS | 65.0% | |
CTGCAGATGCAGCGGGTGCA+TGG | - | chr3.4:88224724-88224743 | MS.gene41622:CDS | 65.0% | |
GACCACATTTGCGGCGGTGG+TGG | + | chr3.4:88224187-88224206 | None:intergenic | 65.0% | |
GCCTAATGGCATGGCCGTGG+AGG | + | chr3.4:88225360-88225379 | None:intergenic | 65.0% | |
GGTGACCACATTTGCGGCGG+TGG | + | chr3.4:88224190-88224209 | None:intergenic | 65.0% | |
GGTGTTCCTAGTCACGGCGG+AGG | - | chr3.4:88227891-88227910 | MS.gene41622:CDS | 65.0% | |
GTGTGTGTGTGTGTGGGGGG+GGG | + | chr3.4:88225326-88225345 | None:intergenic | 65.0% | |
TGTGTGTGTGTGTGGGGGGG+GGG | + | chr3.4:88225325-88225344 | None:intergenic | 65.0% | |
! | GAGGGCACGACGATGGAGAG+AGG | + | chr3.4:88225573-88225592 | None:intergenic | 65.0% |
! | GGCGCCGGAACCGGCAAAAT+TGG | - | chr3.4:88224536-88224555 | MS.gene41622:CDS | 65.0% |
!! | TATTGGCGCCGGCGTCGTGT+TGG | + | chr3.4:88224023-88224042 | None:intergenic | 65.0% |
CACACACCCCCCCTCCTCCA+CGG | - | chr3.4:88225343-88225362 | MS.gene41622:intron | 70.0% | |
CGGGCCTAATGGCATGGCCG+TGG | + | chr3.4:88225363-88225382 | None:intergenic | 70.0% | |
GTGTGTGTGTGTGGGGGGGG+GGG | + | chr3.4:88225324-88225343 | None:intergenic | 70.0% | |
TGGCATGGCCGTGGAGGAGG+GGG | + | chr3.4:88225354-88225373 | None:intergenic | 70.0% | |
TGTGTGTGTGTGGGGGGGGG+GGG | + | chr3.4:88225323-88225342 | None:intergenic | 70.0% | |
! | TGCGGCGGTGGTGGTGCCTA+GGG | + | chr3.4:88224178-88224197 | None:intergenic | 70.0% |
! | TTGCGGCGGTGGTGGTGCCT+AGG | + | chr3.4:88224179-88224198 | None:intergenic | 70.0% |
!! | CGGCGGAATTGGAGCGTCGG+AGG | + | chr3.4:88223995-88224014 | None:intergenic | 70.0% |
!! | GAGCGTCGGAGGCTGTGGAG+TGG | + | chr3.4:88223984-88224003 | None:intergenic | 70.0% |
GCATGGCCGTGGAGGAGGGG+GGG | + | chr3.4:88225352-88225371 | None:intergenic | 75.0% | |
GGCATGGCCGTGGAGGAGGG+GGG | + | chr3.4:88225353-88225372 | None:intergenic | 75.0% | |
GTGTGTGTGTGGGGGGGGGG+GGG | + | chr3.4:88225322-88225341 | None:intergenic | 75.0% | |
TGTGTGTGTGGGGGGGGGGG+GGG | + | chr3.4:88225321-88225340 | None:intergenic | 75.0% | |
! | GTGTGTGTGGGGGGGGGGGG+GGG | + | chr3.4:88225320-88225339 | None:intergenic | 80.0% |
! | TGTGTGTGGGGGGGGGGGGG+GGG | + | chr3.4:88225319-88225338 | None:intergenic | 80.0% |
! | GTGTGTGGGGGGGGGGGGGG+GGG | + | chr3.4:88225318-88225337 | None:intergenic | 85.0% |
! | TGTGTGGGGGGGGGGGGGGG+GGG | + | chr3.4:88225317-88225336 | None:intergenic | 85.0% |
! | GTGTGGGGGGGGGGGGGGGG+GGG | + | chr3.4:88225316-88225335 | None:intergenic | 90.0% |
! | TGTGGGGGGGGGGGGGGGGG+GGG | + | chr3.4:88225315-88225334 | None:intergenic | 90.0% |
! | GTGGGGGGGGGGGGGGGGGG+GGG | + | chr3.4:88225314-88225333 | None:intergenic | 95.0% |
! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr3.4:88225313-88225332 | None:intergenic | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 88223967 | 88227956 | 88223967 | ID=MS.gene41622 |
chr3.4 | mRNA | 88223967 | 88227956 | 88223967 | ID=MS.gene41622.t1;Parent=MS.gene41622 |
chr3.4 | exon | 88226978 | 88227956 | 88226978 | ID=MS.gene41622.t1.exon1;Parent=MS.gene41622.t1 |
chr3.4 | CDS | 88226978 | 88227956 | 88226978 | ID=cds.MS.gene41622.t1;Parent=MS.gene41622.t1 |
chr3.4 | exon | 88224835 | 88225007 | 88224835 | ID=MS.gene41622.t1.exon2;Parent=MS.gene41622.t1 |
chr3.4 | CDS | 88224835 | 88225007 | 88224835 | ID=cds.MS.gene41622.t1;Parent=MS.gene41622.t1 |
chr3.4 | exon | 88223967 | 88224749 | 88223967 | ID=MS.gene41622.t1.exon3;Parent=MS.gene41622.t1 |
chr3.4 | CDS | 88223967 | 88224749 | 88223967 | ID=cds.MS.gene41622.t1;Parent=MS.gene41622.t1 |
Gene Sequence |
Protein sequence |