Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43195.t1 | XP_013447749.1 | 93.1 | 175 | 12 | 0 | 1 | 175 | 29 | 203 | 8.10E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43195.t1 | A0A072TWG4 | 93.1 | 175 | 12 | 0 | 1 | 175 | 29 | 203 | 5.9e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene43195 | 0.820954 | 5.22E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene43195 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene43195 | 0.840097 | 1.07E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene43195 | 0.800195 | 1.61E-48 | -1.69E-46 |
| MS.gene052077 | MS.gene43195 | 0.813251 | 2.81E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene43195 | 0.809223 | 2.10E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene43195 | 0.823523 | 1.32E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene43195 | 0.824285 | 8.77E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene43195 | 0.851804 | 6.99E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene43195 | 0.802246 | 6.14E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene43195 | 0.817732 | 2.83E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene43195 | 0.81621 | 6.22E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene43195 | 0.807891 | 4.05E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene43195 | 0.805733 | 1.16E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene43195 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene43195 | 0.813188 | 2.90E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene43195 | 0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene43195 | 0.838348 | 3.03E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene43195 | 0.810735 | 9.94E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene43195 | 0.830425 | 2.96E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene43195 | 0.803381 | 3.58E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene43195 | 0.816148 | 6.42E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene43195 | 0.811273 | 7.60E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene43195 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene43195 | 0.822619 | 2.15E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene43195 | 0.805871 | 1.08E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene43195 | 0.816445 | 5.51E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene43195 | 0.829998 | 3.76E-55 | -1.69E-46 |
| MS.gene059899 | MS.gene43195 | 0.8201 | 8.20E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene43195 | 0.868909 | 4.60E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCCCCTGGCTTGATTGC+AGG | 0.284009 | 7.2:+78752245 | None:intergenic |
| TTAGAAGAAGAGGTAGAAAA+TGG | 0.284315 | 7.2:-78754912 | MS.gene43195:CDS |
| GTCTTTCCCCGTCCATTTGT+GGG | 0.335427 | 7.2:-78754706 | MS.gene43195:CDS |
| GTTGGAGTGACCTGCCATTT+AGG | 0.345270 | 7.2:-78754498 | MS.gene43195:intron |
| GAATTTGTAATGCACCTAAA+TGG | 0.347451 | 7.2:+78754484 | None:intergenic |
| TGTCTTTCCCCGTCCATTTG+TGG | 0.377359 | 7.2:-78754707 | MS.gene43195:CDS |
| AGTTCAGTTACTAACTTTGT+TGG | 0.394090 | 7.2:-78754937 | MS.gene43195:CDS |
| TGTAGAGATTTCGCTATAAT+CGG | 0.426685 | 7.2:+78752036 | None:intergenic |
| AAACTGCATCCTTTGCTAAA+GGG | 0.439731 | 7.2:+78753611 | None:intergenic |
| CAAGCCAGGGGATGCAACTT+TGG | 0.445702 | 7.2:-78752237 | MS.gene43195:intron |
| CATCCTTTGCTAAAGGGAAA+AGG | 0.457962 | 7.2:+78753617 | None:intergenic |
| AAAACTGCATCCTTTGCTAA+AGG | 0.460379 | 7.2:+78753610 | None:intergenic |
| AATACCTTACGACCCACAAA+TGG | 0.461991 | 7.2:+78754694 | None:intergenic |
| CTCTGAAAATTGTGTGTATG+AGG | 0.478927 | 7.2:-78754734 | MS.gene43195:CDS |
| TTTGTTGGAGTTAGAAGAAG+AGG | 0.501192 | 7.2:-78754922 | MS.gene43195:CDS |
| CCGTCCATTTGTGGGTCGTA+AGG | 0.502954 | 7.2:-78754698 | MS.gene43195:intron |
| GTTGAACCTGCAATCAAGCC+AGG | 0.510194 | 7.2:-78752251 | MS.gene43195:CDS |
| GTGGTGAGAAATTTCTATGA+AGG | 0.510587 | 7.2:-78754796 | MS.gene43195:CDS |
| ACAAAGTTAGTAACTGAACT+TGG | 0.518227 | 7.2:+78754940 | None:intergenic |
| TGTTATTGATGATTTGTCTA+CGG | 0.524833 | 7.2:-78754535 | MS.gene43195:CDS |
| CATACCAAAGTTGCATCCCC+TGG | 0.535620 | 7.2:+78752233 | None:intergenic |
| CTTACGACCCACAAATGGAC+GGG | 0.539846 | 7.2:+78754699 | None:intergenic |
| TTGTAATGCACCTAAATGGC+AGG | 0.539899 | 7.2:+78754488 | None:intergenic |
| CCTGATAAACAGATATGGAC+GGG | 0.569528 | 7.2:-78752279 | MS.gene43195:intron |
| ACGGAGGACACATCATCTGT+TGG | 0.576554 | 7.2:-78754516 | MS.gene43195:CDS |
| GTTCACTGATTCTACAAGCA+AGG | 0.580496 | 7.2:-78754568 | MS.gene43195:CDS |
| TATCGTTTGGAGGTGATCAA+CGG | 0.583745 | 7.2:-78753587 | MS.gene43195:CDS |
| CCTTACGACCCACAAATGGA+CGG | 0.594292 | 7.2:+78754698 | None:intergenic |
| TTGAACCTGCAATCAAGCCA+GGG | 0.605419 | 7.2:-78752250 | MS.gene43195:CDS |
| TCCTGATAAACAGATATGGA+CGG | 0.605638 | 7.2:-78752280 | MS.gene43195:intron |
| AGGAATCAATGCACATGATG+TGG | 0.614466 | 7.2:-78754776 | MS.gene43195:CDS |
| TGTAGATTTAGCTTCAACAG+TGG | 0.615254 | 7.2:-78754815 | MS.gene43195:CDS |
| TATTGATGATTTGTCTACGG+AGG | 0.643380 | 7.2:-78754532 | MS.gene43195:CDS |
| TTACTGAGTGCAGAATGGAA+AGG | 0.655983 | 7.2:-78753644 | MS.gene43195:intron |
| GTTGTTATCATCAAAGTGTG+TGG | 0.656507 | 7.2:+78754840 | None:intergenic |
| TTACGACCCACAAATGGACG+GGG | 0.673345 | 7.2:+78754700 | None:intergenic |
| CAAATGGACGGGGAAAGACA+AGG | 0.690999 | 7.2:+78754710 | None:intergenic |
| TGAACCTGCAATCAAGCCAG+GGG | 0.698730 | 7.2:-78752249 | MS.gene43195:CDS |
| AATATGACAGTTAATAACAA+CGG | 0.699079 | 7.2:-78754889 | MS.gene43195:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAAGTAAATTTCAAA+AGG | - | chr7.2:78753314-78753333 | MS.gene43195:intron | 10.0% |
| !!! | ATTTTTTTAGTAATTCATAT+CGG | - | chr7.2:78754440-78754459 | MS.gene43195:intron | 10.0% |
| !! | AAATGTTAAAGACAATATAT+TGG | + | chr7.2:78754654-78754673 | None:intergenic | 15.0% |
| !! | AGAAGTTTAACAAAATTATT+TGG | - | chr7.2:78753837-78753856 | MS.gene43195:intron | 15.0% |
| !! | AGTTAGAAGTTTATAAAAAT+TGG | - | chr7.2:78752360-78752379 | MS.gene43195:intron | 15.0% |
| !! | AAACTACTTACTACTAAATA+AGG | + | chr7.2:78752843-78752862 | None:intergenic | 20.0% |
| !! | AAATAAGATAAAATGAGACA+TGG | + | chr7.2:78753298-78753317 | None:intergenic | 20.0% |
| !! | AACTACTTACTACTAAATAA+GGG | + | chr7.2:78752842-78752861 | None:intergenic | 20.0% |
| !! | AATATGACAGTTAATAACAA+CGG | - | chr7.2:78752113-78752132 | MS.gene43195:intron | 20.0% |
| !! | AATATTAATTGAGTGATACT+CGG | - | chr7.2:78752806-78752825 | MS.gene43195:intron | 20.0% |
| !! | TGTTTAGATTATATTCTTGT+TGG | - | chr7.2:78753587-78753606 | MS.gene43195:CDS | 20.0% |
| !!! | AAAGTGTTAAATTCTAAGTA+TGG | - | chr7.2:78753644-78753663 | MS.gene43195:intron | 20.0% |
| !!! | AATTACTAGTACTATTTTAC+AGG | - | chr7.2:78752389-78752408 | MS.gene43195:intron | 20.0% |
| !!! | ATTTAGTAGTAAGTAGTTTT+TGG | - | chr7.2:78752844-78752863 | MS.gene43195:intron | 20.0% |
| !!! | TTATTTGTTCTATTTCTCAA+TGG | - | chr7.2:78754310-78754329 | MS.gene43195:intron | 20.0% |
| ! | ACTACTTACTACTAAATAAG+GGG | + | chr7.2:78752841-78752860 | None:intergenic | 25.0% |
| ! | AGTTAAAATTCGTAACAGTA+TGG | - | chr7.2:78754146-78754165 | MS.gene43195:intron | 25.0% |
| ! | ATATTAATTGAGTGATACTC+GGG | - | chr7.2:78752807-78752826 | MS.gene43195:intron | 25.0% |
| ! | GATGTCAAAGTAATTAAGAA+AGG | - | chr7.2:78752755-78752774 | MS.gene43195:intron | 25.0% |
| ! | TATTTCCTGATAAACAGATA+TGG | - | chr7.2:78754718-78754737 | MS.gene43195:CDS | 25.0% |
| ! | TTAGATTATATTCTTGTTGG+AGG | - | chr7.2:78753590-78753609 | MS.gene43195:CDS | 25.0% |
| ! | TTCTGTATGCATTAATTCAA+TGG | - | chr7.2:78754500-78754519 | MS.gene43195:CDS | 25.0% |
| !! | AATATAATGTTGTCTGAAAC+TGG | - | chr7.2:78753509-78753528 | MS.gene43195:intron | 25.0% |
| !! | TGTTATTGATGATTTGTCTA+CGG | - | chr7.2:78752467-78752486 | MS.gene43195:intron | 25.0% |
| AAAGACAACATTGTTAAGCA+TGG | - | chr7.2:78753922-78753941 | MS.gene43195:intron | 30.0% | |
| AAGACAACATTGTTAAGCAT+GGG | - | chr7.2:78753923-78753942 | MS.gene43195:intron | 30.0% | |
| ACAAAGTTAGTAACTGAACT+TGG | + | chr7.2:78752065-78752084 | None:intergenic | 30.0% | |
| AGATTTCTATGCATTCTTCA+GGG | - | chr7.2:78753756-78753775 | MS.gene43195:intron | 30.0% | |
| AGTTCAGTTACTAACTTTGT+TGG | - | chr7.2:78752065-78752084 | MS.gene43195:intron | 30.0% | |
| ATGCTTAACAATGTTGTCTT+TGG | + | chr7.2:78753923-78753942 | None:intergenic | 30.0% | |
| ATTAAGAAAGGATGAAGATC+AGG | - | chr7.2:78752767-78752786 | MS.gene43195:intron | 30.0% | |
| ATTGTTAAGCATGGGATAAT+TGG | - | chr7.2:78753931-78753950 | MS.gene43195:intron | 30.0% | |
| CTTGGAAAATGATACGAAAT+TGG | - | chr7.2:78753894-78753913 | MS.gene43195:intron | 30.0% | |
| GAATTTGTAATGCACCTAAA+TGG | + | chr7.2:78752521-78752540 | None:intergenic | 30.0% | |
| GAGATGCAGGAAAAATAAAT+TGG | + | chr7.2:78754382-78754401 | None:intergenic | 30.0% | |
| TATTAATTGAGTGATACTCG+GGG | - | chr7.2:78752808-78752827 | MS.gene43195:intron | 30.0% | |
| TGAATGGAAAAATTGCTTGA+AGG | + | chr7.2:78754597-78754616 | None:intergenic | 30.0% | |
| TGTTGAGAGTGAAATTAGAA+CGG | - | chr7.2:78753670-78753689 | MS.gene43195:intron | 30.0% | |
| TTAACTTTGTGTTTCAATGC+AGG | + | chr7.2:78752675-78752694 | None:intergenic | 30.0% | |
| TTAAGAAAGGATGAAGATCA+GGG | - | chr7.2:78752768-78752787 | MS.gene43195:intron | 30.0% | |
| TTAGAAGAAGAGGTAGAAAA+TGG | - | chr7.2:78752090-78752109 | MS.gene43195:intron | 30.0% | |
| TTCAAAAAACAAGTGAGACA+CGG | + | chr7.2:78753998-78754017 | None:intergenic | 30.0% | |
| TTTGGAAACAATTAACATGC+AGG | - | chr7.2:78754891-78754910 | MS.gene43195:CDS | 30.0% | |
| ! | AACTCTGATTTGTGTAGTAA+GGG | - | chr7.2:78753958-78753977 | MS.gene43195:intron | 30.0% |
| ! | CAAGTGATTTTTCATGACAA+AGG | - | chr7.2:78754213-78754232 | MS.gene43195:intron | 30.0% |
| ! | GAATGTCTGATTTTCTCTTA+AGG | - | chr7.2:78754015-78754034 | MS.gene43195:intron | 30.0% |
| ! | GATTTTTCCCAGTGTATTAA+AGG | - | chr7.2:78754109-78754128 | MS.gene43195:intron | 30.0% |
| ! | TCTGATTTTCTCTTAAGGTT+TGG | - | chr7.2:78754020-78754039 | MS.gene43195:intron | 30.0% |
| ! | TTCAAGCAATTTTTCCATTC+AGG | - | chr7.2:78754596-78754615 | MS.gene43195:intron | 30.0% |
| ! | TTGTACTGTTTTATCAGTTG+AGG | - | chr7.2:78754526-78754545 | MS.gene43195:CDS | 30.0% |
| !! | TTTATTTTTCCTGCATCTCT+AGG | - | chr7.2:78754383-78754402 | MS.gene43195:intron | 30.0% |
| AAAACTGCATCCTTTGCTAA+AGG | + | chr7.2:78753395-78753414 | None:intergenic | 35.0% | |
| AAACTGCATCCTTTGCTAAA+GGG | + | chr7.2:78753394-78753413 | None:intergenic | 35.0% | |
| AAATTGAGAAAAGCAGCTTG+TGG | - | chr7.2:78753617-78753636 | MS.gene43195:CDS | 35.0% | |
| AAGATAGAGAGGTTAGAGAA+GGG | - | chr7.2:78753722-78753741 | MS.gene43195:intron | 35.0% | |
| AATAGCAAAATGGTTGGGTT+TGG | - | chr7.2:78754048-78754067 | MS.gene43195:intron | 35.0% | |
| ACAAAGTTAATCACCTGAGT+TGG | - | chr7.2:78752685-78752704 | MS.gene43195:intron | 35.0% | |
| ACTCAATAGCATCACTGATA+AGG | + | chr7.2:78754804-78754823 | None:intergenic | 35.0% | |
| CAGGTGACTATTAACATTGT+TGG | + | chr7.2:78754086-78754105 | None:intergenic | 35.0% | |
| GAGATTTCTATGCATTCTTC+AGG | - | chr7.2:78753755-78753774 | MS.gene43195:intron | 35.0% | |
| GATTTCGGCAGAATAGTTTA+TGG | - | chr7.2:78754554-78754573 | MS.gene43195:CDS | 35.0% | |
| GTGGTGAGAAATTTCTATGA+AGG | - | chr7.2:78752206-78752225 | MS.gene43195:intron | 35.0% | |
| GTTGTTATCATCAAAGTGTG+TGG | + | chr7.2:78752165-78752184 | None:intergenic | 35.0% | |
| TACACTGGGAAAAATCAAAC+AGG | + | chr7.2:78754105-78754124 | None:intergenic | 35.0% | |
| TCCTGATAAACAGATATGGA+CGG | - | chr7.2:78754722-78754741 | MS.gene43195:CDS | 35.0% | |
| TCTTCCTCCTTTAATACACT+GGG | + | chr7.2:78754119-78754138 | None:intergenic | 35.0% | |
| TGAGCTAGCAAATCTAAACA+TGG | + | chr7.2:78753096-78753115 | None:intergenic | 35.0% | |
| TTACTGAGATACTAGCAGAA+AGG | + | chr7.2:78753042-78753061 | None:intergenic | 35.0% | |
| TTAGAGACTTAGCATGTGTT+CGG | - | chr7.2:78754169-78754188 | MS.gene43195:intron | 35.0% | |
| TTGATTCCTAACTCTCCAAA+TGG | + | chr7.2:78754196-78754215 | None:intergenic | 35.0% | |
| TTTGTTGGAGTTAGAAGAAG+AGG | - | chr7.2:78752080-78752099 | MS.gene43195:intron | 35.0% | |
| ! | AATTGGTGTTCCAGAATACT+CGG | + | chr7.2:78754365-78754384 | None:intergenic | 35.0% |
| ! | AGCTATCAGTCTGATCTTTT+TGG | - | chr7.2:78754873-78754892 | MS.gene43195:CDS | 35.0% |
| ! | AGGATGCAGTTTTTATCGTT+TGG | - | chr7.2:78753402-78753421 | MS.gene43195:intron | 35.0% |
| ! | ATGAGCAATTTTGTCAGGAT+GGG | - | chr7.2:78753812-78753831 | MS.gene43195:intron | 35.0% |
| ! | ATGCAGTTTTTATCGTTTGG+AGG | - | chr7.2:78753405-78753424 | MS.gene43195:intron | 35.0% |
| ! | CTCTGAAAATTGTGTGTATG+AGG | - | chr7.2:78752268-78752287 | MS.gene43195:CDS | 35.0% |
| ! | GAACTCTGATTTGTGTAGTA+AGG | - | chr7.2:78753957-78753976 | MS.gene43195:intron | 35.0% |
| ! | TATTGATGATTTGTCTACGG+AGG | - | chr7.2:78752470-78752489 | MS.gene43195:intron | 35.0% |
| ! | TGTAGATTTAGCTTCAACAG+TGG | - | chr7.2:78752187-78752206 | MS.gene43195:intron | 35.0% |
| ! | TTTTCCCAGTGTATTAAAGG+AGG | - | chr7.2:78754112-78754131 | MS.gene43195:intron | 35.0% |
| !! | ATCTGATTGGGCCATTTTAT+TGG | - | chr7.2:78753121-78753140 | MS.gene43195:intron | 35.0% |
| !! | TCTGATTGGGCCATTTTATT+GGG | - | chr7.2:78753122-78753141 | MS.gene43195:intron | 35.0% |
| !! | TGTTTAGGTTTGGTGTGTAA+TGG | - | chr7.2:78754339-78754358 | MS.gene43195:intron | 35.0% |
| !! | TTTTCTCTTAAGGTTTGGTC+CGG | - | chr7.2:78754025-78754044 | MS.gene43195:intron | 35.0% |
| AAAATGGTTGGGTTTGGAAG+TGG | - | chr7.2:78754054-78754073 | MS.gene43195:intron | 40.0% | |
| AACAGACTAAAATGCTTCCG+TGG | - | chr7.2:78754259-78754278 | MS.gene43195:intron | 40.0% | |
| AATACCTTACGACCCACAAA+TGG | + | chr7.2:78752311-78752330 | None:intergenic | 40.0% | |
| AGGAATCAATGCACATGATG+TGG | - | chr7.2:78752226-78752245 | MS.gene43195:intron | 40.0% | |
| ATAGGATCAGGTCAATCACT+CGG | + | chr7.2:78752898-78752917 | None:intergenic | 40.0% | |
| CAGTGATAAAGACTGTCACA+TGG | - | chr7.2:78754914-78754933 | MS.gene43195:CDS | 40.0% | |
| CATCCTTTGCTAAAGGGAAA+AGG | + | chr7.2:78753388-78753407 | None:intergenic | 40.0% | |
| CCTGATAAACAGATATGGAC+GGG | - | chr7.2:78754723-78754742 | MS.gene43195:CDS | 40.0% | |
| CTAAAATGCTTCCGTGGAAT+TGG | - | chr7.2:78754265-78754284 | MS.gene43195:intron | 40.0% | |
| CTCTTCCTCCTTTAATACAC+TGG | + | chr7.2:78754120-78754139 | None:intergenic | 40.0% | |
| GAAGATAGAGAGGTTAGAGA+AGG | - | chr7.2:78753721-78753740 | MS.gene43195:intron | 40.0% | |
| GAGAAACACATTCAATCCCA+AGG | + | chr7.2:78754626-78754645 | None:intergenic | 40.0% | |
| GAGAGTGAAATTAGAACGGT+TGG | - | chr7.2:78753674-78753693 | MS.gene43195:intron | 40.0% | |
| GTCCTCGATCTGTACATATT+GGG | - | chr7.2:78753148-78753167 | MS.gene43195:intron | 40.0% | |
| GTGTATTAAAGGAGGAAGAG+TGG | - | chr7.2:78754120-78754139 | MS.gene43195:intron | 40.0% | |
| TAAAATGGCCCAATCAGATG+AGG | + | chr7.2:78753120-78753139 | None:intergenic | 40.0% | |
| TAGCTCATCCTCATCTGATT+GGG | - | chr7.2:78753109-78753128 | MS.gene43195:intron | 40.0% | |
| TATCGTTTGGAGGTGATCAA+CGG | - | chr7.2:78753415-78753434 | MS.gene43195:intron | 40.0% | |
| TCAGTTGAGGTTGCAGATTT+CGG | - | chr7.2:78754539-78754558 | MS.gene43195:CDS | 40.0% | |
| TCCGGAATAGCAAAATGGTT+GGG | - | chr7.2:78754043-78754062 | MS.gene43195:intron | 40.0% | |
| TCTCAATGGTTCGCTTGTTT+AGG | - | chr7.2:78754324-78754343 | MS.gene43195:intron | 40.0% | |
| TCTTCAACGATTTCCTCAGT+TGG | - | chr7.2:78754939-78754958 | MS.gene43195:CDS | 40.0% | |
| TGTCCTCGATCTGTACATAT+TGG | - | chr7.2:78753147-78753166 | MS.gene43195:intron | 40.0% | |
| TTACTGAGTGCAGAATGGAA+AGG | - | chr7.2:78753358-78753377 | MS.gene43195:intron | 40.0% | |
| TTGAAAACTCAGCATGGAGA+CGG | + | chr7.2:78753072-78753091 | None:intergenic | 40.0% | |
| TTGTAATGCACCTAAATGGC+AGG | + | chr7.2:78752517-78752536 | None:intergenic | 40.0% | |
| TTTCCATTCAGGCATTCCTT+GGG | - | chr7.2:78754607-78754626 | MS.gene43195:intron | 40.0% | |
| TTTGGTCCGGAATAGCAAAA+TGG | - | chr7.2:78754038-78754057 | MS.gene43195:intron | 40.0% | |
| ! | AAGCCTTTTCCCTTTAGCAA+AGG | - | chr7.2:78753382-78753401 | MS.gene43195:intron | 40.0% |
| ! | AATTAGAACGGTTGGCTGTT+TGG | - | chr7.2:78753682-78753701 | MS.gene43195:intron | 40.0% |
| ! | ATGGTTCGCTTGTTTAGGTT+TGG | - | chr7.2:78754329-78754348 | MS.gene43195:intron | 40.0% |
| ! | CATGGATTGAAAACTCAGCA+TGG | + | chr7.2:78753078-78753097 | None:intergenic | 40.0% |
| ! | CTTTGACATCAGAGTGTCTT+TGG | + | chr7.2:78752745-78752764 | None:intergenic | 40.0% |
| ! | GATGAGCAATTTTGTCAGGA+TGG | - | chr7.2:78753811-78753830 | MS.gene43195:intron | 40.0% |
| ! | GTTTGTTACTGAGTGCAGAA+TGG | - | chr7.2:78753353-78753372 | MS.gene43195:intron | 40.0% |
| ! | TGCTGATGAGCAATTTTGTC+AGG | - | chr7.2:78753807-78753826 | MS.gene43195:intron | 40.0% |
| ! | TGGAGCATTTGAGGTGTAAT+CGG | - | chr7.2:78752930-78752949 | MS.gene43195:intron | 40.0% |
| ! | TTTTCCATTCAGGCATTCCT+TGG | - | chr7.2:78754606-78754625 | MS.gene43195:intron | 40.0% |
| !! | GTGGGTCGTAAGGTATTTTA+AGG | - | chr7.2:78752314-78752333 | MS.gene43195:intron | 40.0% |
| !! | GTTCACTGATTCTACAAGCA+AGG | - | chr7.2:78752434-78752453 | MS.gene43195:intron | 40.0% |
| !! | TTAGCTTGCAACCAATTCCA+CGG | + | chr7.2:78754279-78754298 | None:intergenic | 40.0% |
| !!! | ACCCAACCATTTTGCTATTC+CGG | + | chr7.2:78754047-78754066 | None:intergenic | 40.0% |
| AACCACCTTCAAAGGACTGA+TGG | + | chr7.2:78753867-78753886 | None:intergenic | 45.0% | |
| AATCCCAAGGAATGCCTGAA+TGG | + | chr7.2:78754613-78754632 | None:intergenic | 45.0% | |
| AGCCCAATATGTACAGATCG+AGG | + | chr7.2:78753153-78753172 | None:intergenic | 45.0% | |
| AGGTCAATCACTCGGAATAG+AGG | + | chr7.2:78752890-78752909 | None:intergenic | 45.0% | |
| CCCGTCCATATCTGTTTATC+AGG | + | chr7.2:78754726-78754745 | None:intergenic | 45.0% | |
| CGAGGACAGACCCAATAAAA+TGG | + | chr7.2:78753135-78753154 | None:intergenic | 45.0% | |
| CTAGCTCATCCTCATCTGAT+TGG | - | chr7.2:78753108-78753127 | MS.gene43195:intron | 45.0% | |
| GAGGGTTATATCACCAACTC+AGG | + | chr7.2:78752701-78752720 | None:intergenic | 45.0% | |
| GCGAACAAAACCACCTTCAA+AGG | + | chr7.2:78753875-78753894 | None:intergenic | 45.0% | |
| GTCCGGAATAGCAAAATGGT+TGG | - | chr7.2:78754042-78754061 | MS.gene43195:intron | 45.0% | |
| TAGCATGTGTTCGGTCCATT+TGG | - | chr7.2:78754178-78754197 | MS.gene43195:intron | 45.0% | |
| TATAATCGGTCTGCCAACTG+AGG | + | chr7.2:78754955-78754974 | None:intergenic | 45.0% | |
| TGTGTAATGGCCGAGTATTC+TGG | - | chr7.2:78754352-78754371 | MS.gene43195:intron | 45.0% | |
| TTCGGTCCATTTGGAGAGTT+AGG | - | chr7.2:78754187-78754206 | MS.gene43195:intron | 45.0% | |
| TTGAACCTGCAATCAAGCCA+GGG | - | chr7.2:78754752-78754771 | MS.gene43195:CDS | 45.0% | |
| ! | GAGCATTTGAGGTGTAATCG+GGG | - | chr7.2:78752932-78752951 | MS.gene43195:intron | 45.0% |
| ! | GGAGCATTTGAGGTGTAATC+GGG | - | chr7.2:78752931-78752950 | MS.gene43195:intron | 45.0% |
| ! | GTGCATTGATGAGAGTAGCA+TGG | - | chr7.2:78753480-78753499 | MS.gene43195:intron | 45.0% |
| ! | TGACATCAGAGTGTCTTTGG+TGG | + | chr7.2:78752742-78752761 | None:intergenic | 45.0% |
| !! | AGGTTAGAGAAGGGTGTTGA+GGG | - | chr7.2:78753731-78753750 | MS.gene43195:intron | 45.0% |
| !!! | TGAAGGTGGTTTTGTTCGCT+TGG | - | chr7.2:78753876-78753895 | MS.gene43195:intron | 45.0% |
| !! | AATATTAAACTAATTTATAA+TGG | + | chr7.2:78752649-78752668 | None:intergenic | 5.0% |
| ACCTCAAATGCTCCAAGAGC+GGG | + | chr7.2:78752925-78752944 | None:intergenic | 50.0% | |
| ACGGAGGACACATCATCTGT+TGG | - | chr7.2:78752486-78752505 | MS.gene43195:intron | 50.0% | |
| AGAGCGGGATACATAGGATC+AGG | + | chr7.2:78752910-78752929 | None:intergenic | 50.0% | |
| CAAATGGACGGGGAAAGACA+AGG | + | chr7.2:78752295-78752314 | None:intergenic | 50.0% | |
| CACCTCAAATGCTCCAAGAG+CGG | + | chr7.2:78752926-78752945 | None:intergenic | 50.0% | |
| CATACCAAAGTTGCATCCCC+TGG | + | chr7.2:78754772-78754791 | None:intergenic | 50.0% | |
| CCATGTGTACCTAGAGATGC+AGG | + | chr7.2:78754395-78754414 | None:intergenic | 50.0% | |
| CCTGCATCTCTAGGTACACA+TGG | - | chr7.2:78754392-78754411 | MS.gene43195:intron | 50.0% | |
| CCTTACGACCCACAAATGGA+CGG | + | chr7.2:78752307-78752326 | None:intergenic | 50.0% | |
| CTTACGACCCACAAATGGAC+GGG | + | chr7.2:78752306-78752325 | None:intergenic | 50.0% | |
| GATCCTATGTATCCCGCTCT+TGG | - | chr7.2:78752910-78752929 | MS.gene43195:intron | 50.0% | |
| GCATCTCTAGGTACACATGG+TGG | - | chr7.2:78754395-78754414 | MS.gene43195:intron | 50.0% | |
| GCATGCCATCAGTCCTTTGA+AGG | - | chr7.2:78753859-78753878 | MS.gene43195:intron | 50.0% | |
| GTCTTTCCCCGTCCATTTGT+GGG | - | chr7.2:78752296-78752315 | MS.gene43195:intron | 50.0% | |
| GTTGAACCTGCAATCAAGCC+AGG | - | chr7.2:78754751-78754770 | MS.gene43195:CDS | 50.0% | |
| TGAACCTGCAATCAAGCCAG+GGG | - | chr7.2:78754753-78754772 | MS.gene43195:CDS | 50.0% | |
| TGTCTTTCCCCGTCCATTTG+TGG | - | chr7.2:78752295-78752314 | MS.gene43195:intron | 50.0% | |
| TTACGACCCACAAATGGACG+GGG | + | chr7.2:78752305-78752324 | None:intergenic | 50.0% | |
| TTGAGTGATACTCGGGGAGT+CGG | - | chr7.2:78752814-78752833 | MS.gene43195:intron | 50.0% | |
| TTGGCTGTTTGGATTCACCG+TGG | - | chr7.2:78753693-78753712 | MS.gene43195:intron | 50.0% | |
| ! | AGCATACTAGAAGCGCAGGA+GGG | + | chr7.2:78752719-78752738 | None:intergenic | 50.0% |
| ! | GTTGGAGTGACCTGCCATTT+AGG | - | chr7.2:78752504-78752523 | MS.gene43195:intron | 50.0% |
| ! | GTTTAAGACGCTGCAGTGCA+AGG | - | chr7.2:78754469-78754488 | MS.gene43195:intron | 50.0% |
| ! | TGCCATCAGTCCTTTGAAGG+TGG | - | chr7.2:78753862-78753881 | MS.gene43195:intron | 50.0% |
| !! | GAGGTTAGAGAAGGGTGTTG+AGG | - | chr7.2:78753730-78753749 | MS.gene43195:intron | 50.0% |
| !! | GGTTAGAGAAGGGTGTTGAG+GGG | - | chr7.2:78753732-78753751 | MS.gene43195:intron | 50.0% |
| !! | GTTAGAGAAGGGTGTTGAGG+GGG | - | chr7.2:78753733-78753752 | MS.gene43195:intron | 50.0% |
| AGCCAAGTGCACAACCACGA+TGG | + | chr7.2:78752988-78753007 | None:intergenic | 55.0% | |
| CAAGCCAGGGGATGCAACTT+TGG | - | chr7.2:78754765-78754784 | MS.gene43195:CDS | 55.0% | |
| CAAGTGCACAACCACGATGG+CGG | + | chr7.2:78752985-78753004 | None:intergenic | 55.0% | |
| CCGTCCATTTGTGGGTCGTA+AGG | - | chr7.2:78752304-78752323 | MS.gene43195:intron | 55.0% | |
| CTCTCTATCTTCCGCCACCA+CGG | + | chr7.2:78753713-78753732 | None:intergenic | 55.0% | |
| GCTCCAAGAGCGGGATACAT+AGG | + | chr7.2:78752916-78752935 | None:intergenic | 55.0% | |
| GCTGTTTGGATTCACCGTGG+TGG | - | chr7.2:78753696-78753715 | MS.gene43195:intron | 55.0% | |
| GTTTGGATTCACCGTGGTGG+CGG | - | chr7.2:78753699-78753718 | MS.gene43195:intron | 55.0% | |
| TGAGTGATACTCGGGGAGTC+GGG | - | chr7.2:78752815-78752834 | MS.gene43195:intron | 55.0% | |
| ! | GAGCATACTAGAAGCGCAGG+AGG | + | chr7.2:78752720-78752739 | None:intergenic | 55.0% |
| ! | GTGGAGCATACTAGAAGCGC+AGG | + | chr7.2:78752723-78752742 | None:intergenic | 55.0% |
| ! | TCCCGCTCTTGGAGCATTTG+AGG | - | chr7.2:78752921-78752940 | MS.gene43195:intron | 55.0% |
| CGCCATCGTGGTTGTGCACT+TGG | - | chr7.2:78752983-78753002 | MS.gene43195:intron | 60.0% | |
| GTTCCTGACATCCGCCATCG+TGG | - | chr7.2:78752971-78752990 | MS.gene43195:intron | 60.0% | |
| ! | GCATCCCCTGGCTTGATTGC+AGG | + | chr7.2:78754760-78754779 | None:intergenic | 60.0% |
| !! | CAACCACGATGGCGGATGTC+AGG | + | chr7.2:78752977-78752996 | None:intergenic | 60.0% |
| !! | CGTGGTGGCGGAAGATAGAG+AGG | - | chr7.2:78753711-78753730 | MS.gene43195:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 78752049 | 78754975 | 78752049 | ID=MS.gene43195 |
| chr7.2 | mRNA | 78752049 | 78754975 | 78752049 | ID=MS.gene43195.t1;Parent=MS.gene43195 |
| chr7.2 | exon | 78754699 | 78754975 | 78754699 | ID=MS.gene43195.t1.exon1;Parent=MS.gene43195.t1 |
| chr7.2 | CDS | 78754699 | 78754975 | 78754699 | ID=cds.MS.gene43195.t1;Parent=MS.gene43195.t1 |
| chr7.2 | exon | 78754499 | 78754613 | 78754499 | ID=MS.gene43195.t1.exon2;Parent=MS.gene43195.t1 |
| chr7.2 | CDS | 78754499 | 78754613 | 78754499 | ID=cds.MS.gene43195.t1;Parent=MS.gene43195.t1 |
| chr7.2 | exon | 78753572 | 78753653 | 78753572 | ID=MS.gene43195.t1.exon3;Parent=MS.gene43195.t1 |
| chr7.2 | CDS | 78753572 | 78753653 | 78753572 | ID=cds.MS.gene43195.t1;Parent=MS.gene43195.t1 |
| chr7.2 | exon | 78752238 | 78752289 | 78752238 | ID=MS.gene43195.t1.exon4;Parent=MS.gene43195.t1 |
| chr7.2 | CDS | 78752238 | 78752289 | 78752238 | ID=cds.MS.gene43195.t1;Parent=MS.gene43195.t1 |
| chr7.2 | exon | 78752049 | 78752066 | 78752049 | ID=MS.gene43195.t1.exon5;Parent=MS.gene43195.t1 |
| chr7.2 | CDS | 78752049 | 78752066 | 78752049 | ID=cds.MS.gene43195.t1;Parent=MS.gene43195.t1 |
| Gene Sequence |
| Protein sequence |
