Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43800.t1 | XP_003615635.1 | 99.1 | 435 | 3 | 1 | 1 | 434 | 1 | 435 | 2.30E-231 | 811.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43800.t1 | Q93Z81 | 69.3 | 417 | 117 | 5 | 26 | 433 | 33 | 447 | 1.6e-153 | 543.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43800.t1 | G7KE49 | 99.1 | 435 | 3 | 1 | 1 | 434 | 1 | 435 | 1.7e-231 | 811.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene43800 | 0.832371 | 9.82E-56 | -1.69E-46 |
| MS.gene053184 | MS.gene43800 | 0.80898 | 2.37E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene43800 | 0.816021 | 6.85E-52 | -1.69E-46 |
| MS.gene054185 | MS.gene43800 | 0.82024 | 7.62E-53 | -1.69E-46 |
| MS.gene054713 | MS.gene43800 | 0.846041 | 2.79E-59 | -1.69E-46 |
| MS.gene055860 | MS.gene43800 | 0.819463 | 1.15E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene43800 | 0.802257 | 6.11E-49 | -1.69E-46 |
| MS.gene058042 | MS.gene43800 | 0.856691 | 2.71E-62 | -1.69E-46 |
| MS.gene058168 | MS.gene43800 | 0.805165 | 1.52E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene43800 | 0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene43800 | 0.803738 | 3.02E-49 | -1.69E-46 |
| MS.gene059421 | MS.gene43800 | 0.803725 | 3.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43800.t1 | MTR_5g070330 | 99.080 | 435 | 3 | 1 | 1 | 434 | 1 | 435 | 0.0 | 873 |
| MS.gene43800.t1 | MTR_4g016720 | 69.880 | 415 | 111 | 6 | 25 | 432 | 34 | 441 | 0.0 | 546 |
| MS.gene43800.t1 | MTR_7g068380 | 70.123 | 405 | 114 | 4 | 25 | 425 | 34 | 435 | 0.0 | 512 |
| MS.gene43800.t1 | MTR_2g105640 | 46.455 | 409 | 201 | 6 | 27 | 425 | 38 | 438 | 2.56e-114 | 342 |
| MS.gene43800.t1 | MTR_3g082180 | 45.169 | 414 | 211 | 6 | 18 | 419 | 15 | 424 | 1.29e-110 | 333 |
| MS.gene43800.t1 | MTR_8g033030 | 64.198 | 81 | 29 | 0 | 108 | 188 | 16 | 96 | 5.77e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43800.t1 | AT2G38170 | 67.482 | 409 | 122 | 5 | 25 | 425 | 32 | 437 | 0.0 | 536 |
| MS.gene43800.t1 | AT2G38170 | 67.482 | 409 | 122 | 5 | 25 | 425 | 32 | 437 | 0.0 | 536 |
| MS.gene43800.t1 | AT3G51860 | 68.571 | 420 | 117 | 5 | 25 | 433 | 32 | 447 | 0.0 | 535 |
| MS.gene43800.t1 | AT5G01490 | 58.333 | 408 | 157 | 3 | 28 | 424 | 35 | 440 | 6.55e-176 | 499 |
| MS.gene43800.t1 | AT5G01490 | 58.333 | 408 | 157 | 3 | 28 | 424 | 35 | 440 | 6.55e-176 | 499 |
| MS.gene43800.t1 | AT3G51860 | 69.110 | 382 | 103 | 5 | 25 | 395 | 32 | 409 | 1.07e-168 | 482 |
| MS.gene43800.t1 | AT2G38170 | 66.149 | 322 | 98 | 5 | 25 | 338 | 32 | 350 | 3.47e-138 | 401 |
| MS.gene43800.t1 | AT1G55730 | 51.181 | 381 | 171 | 3 | 55 | 425 | 62 | 437 | 5.18e-123 | 365 |
| MS.gene43800.t1 | AT1G55730 | 51.181 | 381 | 171 | 3 | 55 | 425 | 62 | 437 | 5.18e-123 | 365 |
| MS.gene43800.t1 | AT3G13320 | 49.606 | 381 | 177 | 3 | 55 | 425 | 62 | 437 | 5.93e-120 | 357 |
| MS.gene43800.t1 | AT1G55720 | 48.831 | 385 | 183 | 5 | 50 | 425 | 67 | 446 | 2.61e-114 | 342 |
| MS.gene43800.t1 | AT1G55720 | 48.831 | 385 | 183 | 5 | 50 | 425 | 67 | 446 | 5.13e-114 | 342 |
Find 77 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACATTTCTTAGTATT+TGG | 0.108992 | 5.1:+54658349 | None:intergenic |
| CATGCAACAATCACACTTAA+TGG | 0.225296 | 5.1:+54653641 | None:intergenic |
| CATATCTTTGTTCCCTCTTA+AGG | 0.232847 | 5.1:+54655350 | None:intergenic |
| TGTTACAGCCTTCACTTTAC+AGG | 0.243931 | 5.1:-54653549 | MS.gene43800:intron |
| TTTACTGTTGCAGATCATTA+TGG | 0.259267 | 5.1:-54652293 | MS.gene43800:intron |
| TCAAACCTTCTCTTGGTTCT+AGG | 0.273673 | 5.1:-54655403 | MS.gene43800:CDS |
| GACTTCAATCTTCTTGAAAC+TGG | 0.289458 | 5.1:-54653593 | MS.gene43800:CDS |
| ACTAGGCTGCTTCAGATTCT+TGG | 0.297535 | 5.1:-54654141 | MS.gene43800:intron |
| GTTCTCCAAATCTTCATTCA+TGG | 0.298533 | 5.1:+54658461 | None:intergenic |
| AATGGGTATAAGAATGGATT+TGG | 0.331250 | 5.1:-54653615 | MS.gene43800:CDS |
| TCGAACCATGAATGAAGATT+TGG | 0.334079 | 5.1:-54658466 | MS.gene43800:CDS |
| CATTCTCTCAAACCTTCTCT+TGG | 0.346415 | 5.1:-54655410 | MS.gene43800:CDS |
| CTAGGCTGCTTCAGATTCTT+GGG | 0.347536 | 5.1:-54654140 | MS.gene43800:intron |
| TACTCAAATTTCTATGTTTG+TGG | 0.354118 | 5.1:-54653882 | MS.gene43800:intron |
| AAAGAAATCAGATATGGTTT+TGG | 0.357259 | 5.1:-54658391 | MS.gene43800:CDS |
| TGTGATTGTTGCATGGATAA+TGG | 0.362308 | 5.1:-54653633 | MS.gene43800:CDS |
| CTTCTTGAAACTGGATGTCT+TGG | 0.366676 | 5.1:-54653584 | MS.gene43800:CDS |
| CAAGAGAAGGTTTGAGAGAA+TGG | 0.377825 | 5.1:+54655411 | None:intergenic |
| TGACAATTGAAGAGTAGAAT+TGG | 0.381862 | 5.1:+54654954 | None:intergenic |
| GTTGTCAAGTTCTCCTTGCT+TGG | 0.384448 | 5.1:-54655436 | MS.gene43800:CDS |
| GCATATTTCACCGGCCCAAC+AGG | 0.386754 | 5.1:-54655952 | MS.gene43800:intron |
| TGTGAGAAAGAAATCAGATA+TGG | 0.399485 | 5.1:-54658397 | MS.gene43800:CDS |
| CTAGGCAGCTCACTCCTTTG+TGG | 0.409952 | 5.1:-54655385 | MS.gene43800:CDS |
| TGAATGCAGGACATATCTTT+AGG | 0.413622 | 5.1:-54653923 | MS.gene43800:intron |
| TAGATATACTTACTGATTTG+TGG | 0.418490 | 5.1:+54653344 | None:intergenic |
| GTGCTTTCTGAGTATGTTGT+GGG | 0.448183 | 5.1:-54654293 | MS.gene43800:CDS |
| TCTTCATTCATGGTTCGAAA+TGG | 0.450144 | 5.1:+54658471 | None:intergenic |
| GTGATTGTTGCATGGATAAT+GGG | 0.451478 | 5.1:-54653632 | MS.gene43800:CDS |
| GTGGCTTAGCAAACCTTAAG+AGG | 0.457666 | 5.1:-54655363 | MS.gene43800:CDS |
| AAATATGAAAGAGGTTATGT+TGG | 0.461852 | 5.1:-54658325 | MS.gene43800:CDS |
| TTGGAGTGCATTTAGTTGGT+TGG | 0.464416 | 5.1:-54654339 | MS.gene43800:CDS |
| TCTGCAGCATTCCCAACAAT+TGG | 0.469344 | 5.1:+54654082 | None:intergenic |
| AAATCAGCAGCAACAGCTAA+AGG | 0.486221 | 5.1:+54658270 | None:intergenic |
| GAGCAATAATCGTACCTGTT+GGG | 0.492017 | 5.1:+54655938 | None:intergenic |
| GAGTGCATTTAGTTGGTTGG+TGG | 0.506775 | 5.1:-54654336 | MS.gene43800:CDS |
| TGAACATCAATGGCAGCAAA+TGG | 0.508723 | 5.1:+54655010 | None:intergenic |
| GGAAGCTGACACGTTCAGCT+AGG | 0.511657 | 5.1:+54656137 | None:intergenic |
| TGTGCTTTCTGAGTATGTTG+TGG | 0.515082 | 5.1:-54654294 | MS.gene43800:CDS |
| AGTGCATTTAGTTGGTTGGT+GGG | 0.517025 | 5.1:-54654335 | MS.gene43800:CDS |
| AATATGAAAGAGGTTATGTT+GGG | 0.517574 | 5.1:-54658324 | MS.gene43800:CDS |
| ATGGATAATGGGTATAAGAA+TGG | 0.519584 | 5.1:-54653621 | MS.gene43800:CDS |
| TGTGATGACAAATATGAAAG+AGG | 0.520832 | 5.1:-54658334 | MS.gene43800:CDS |
| CATATCTTTAGGTGTTGCAA+TGG | 0.525710 | 5.1:-54653912 | MS.gene43800:CDS |
| CATTAAGTGTGATTGTTGCA+TGG | 0.528687 | 5.1:-54653640 | MS.gene43800:CDS |
| ATATCTTTAGGTGTTGCAAT+GGG | 0.529119 | 5.1:-54653911 | MS.gene43800:CDS |
| AAGGCATACTTGAACATCAA+TGG | 0.533262 | 5.1:+54655000 | None:intergenic |
| GAAGCTGACACGTTCAGCTA+GGG | 0.534246 | 5.1:+54656138 | None:intergenic |
| GGAACTTCACACTATTTGAA+AGG | 0.534618 | 5.1:-54653425 | MS.gene43800:CDS |
| GTGTGAATATTTCAGTTGGA+GGG | 0.540480 | 5.1:-54655534 | MS.gene43800:intron |
| TAATTACACTTACCCTTCCA+AGG | 0.541293 | 5.1:+54658241 | None:intergenic |
| AGGCAAATTGCATATTTCAC+CGG | 0.545551 | 5.1:-54655961 | MS.gene43800:CDS |
| GATGTTCAAGTATGCCTTGG+CGG | 0.545856 | 5.1:-54654995 | MS.gene43800:CDS |
| GCAACAGCTAAAGGAACAGC+CGG | 0.546306 | 5.1:+54658279 | None:intergenic |
| GGCAGCTCACTCCTTTGTGG+TGG | 0.549103 | 5.1:-54655382 | MS.gene43800:CDS |
| ATGTTCAAGTATGCCTTGGC+GGG | 0.558378 | 5.1:-54654994 | MS.gene43800:CDS |
| AGAATGATTGCCACCCGCCA+AGG | 0.559979 | 5.1:+54654981 | None:intergenic |
| AATAATCGTACCTGTTGGGC+CGG | 0.563639 | 5.1:+54655942 | None:intergenic |
| TTGGTTGGTGGGTATGACAT+TGG | 0.564585 | 5.1:-54654324 | MS.gene43800:CDS |
| ATTTGCTTACAAGAACAAGT+TGG | 0.580822 | 5.1:-54654041 | MS.gene43800:intron |
| GGGAATGCTGCAGAACATGC+TGG | 0.585056 | 5.1:-54654073 | MS.gene43800:CDS |
| ATTGATGTTCAAGTATGCCT+TGG | 0.585866 | 5.1:-54654998 | MS.gene43800:CDS |
| TAATATTGCTATGATCATCT+CGG | 0.588080 | 5.1:+54655483 | None:intergenic |
| GAATTTGATGAAATGTTATG+TGG | 0.590212 | 5.1:+54658423 | None:intergenic |
| TTCAAGTATGCCTTGGCGGG+TGG | 0.592175 | 5.1:-54654991 | MS.gene43800:CDS |
| TGAGAGAATGGAACCAAGCA+AGG | 0.600148 | 5.1:+54655423 | None:intergenic |
| ACGACGATAGCTTCAAAGCA+TGG | 0.608256 | 5.1:+54652265 | None:intergenic |
| CTAGGGGAGCAAGTCCAAGT+AGG | 0.616205 | 5.1:+54656155 | None:intergenic |
| ATTAAATGAACAGAAACAAG+CGG | 0.618891 | 5.1:-54655070 | MS.gene43800:intron |
| GTATGTTGTGGGAACGATTG+AGG | 0.628507 | 5.1:-54654282 | MS.gene43800:intron |
| AAGCTGACACGTTCAGCTAG+GGG | 0.628561 | 5.1:+54656139 | None:intergenic |
| TAGGCTGCTTCAGATTCTTG+GGG | 0.629621 | 5.1:-54654139 | MS.gene43800:CDS |
| AGCTGCCTAGAACCAAGAGA+AGG | 0.634661 | 5.1:+54655398 | None:intergenic |
| TGGCTTAGCAAACCTTAAGA+GGG | 0.669460 | 5.1:-54655362 | MS.gene43800:CDS |
| GGGCTTCTAAATGCAACTTG+TGG | 0.683635 | 5.1:-54655514 | MS.gene43800:CDS |
| TGTGCAGACCTGTAAAGTGA+AGG | 0.687046 | 5.1:+54653541 | None:intergenic |
| ACATGCAAACTTACTCAGTG+AGG | 0.690735 | 5.1:+54656116 | None:intergenic |
| GGTTTGCTAAGCCACCACAA+AGG | 0.707409 | 5.1:+54655371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAAATATAAAAAAT+TGG | - | chr5.1:54653846-54653865 | MS.gene43800:intron | 0.0% |
| !!! | AATTTTAAAATTAAAAAATT+AGG | + | chr5.1:54653635-54653654 | None:intergenic | 0.0% |
| !! | AAATACATAATTAGATTAAT+GGG | - | chr5.1:54656581-54656600 | MS.gene43800:intron | 10.0% |
| !! | AAGATAATAATTAATTTAAG+TGG | + | chr5.1:54656189-54656208 | None:intergenic | 10.0% |
| !! | ATACATCAATTAATTAATAT+GGG | + | chr5.1:54656071-54656090 | None:intergenic | 10.0% |
| !! | ATTAGAGATTAATATATATA+TGG | + | chr5.1:54657564-54657583 | None:intergenic | 10.0% |
| !! | TTAGAGATTAATATATATAT+GGG | + | chr5.1:54657563-54657582 | None:intergenic | 10.0% |
| !! | TTATATATTAGTGTAAAATA+TGG | - | chr5.1:54654936-54654955 | MS.gene43800:CDS | 10.0% |
| !!! | AAATAATCCAATTTTTTAAA+GGG | - | chr5.1:54653326-54653345 | MS.gene43800:intron | 10.0% |
| !!! | ATATATTAATCTCTAATTTT+GGG | - | chr5.1:54657567-54657586 | MS.gene43800:intron | 10.0% |
| !!! | ATTTTCTTTCAAAAAATTAT+AGG | - | chr5.1:54658280-54658299 | MS.gene43800:CDS | 10.0% |
| !!! | TAAATAATCCAATTTTTTAA+AGG | - | chr5.1:54653325-54653344 | MS.gene43800:intron | 10.0% |
| !!! | TAAGAATTTTTTTCTTTTTT+TGG | - | chr5.1:54653727-54653746 | MS.gene43800:intron | 10.0% |
| !!! | TATATATTAATCTCTAATTT+TGG | - | chr5.1:54657566-54657585 | MS.gene43800:intron | 10.0% |
| !!! | TTTTCTTTCAAAAAATTATA+GGG | - | chr5.1:54658281-54658300 | MS.gene43800:CDS | 10.0% |
| !! | AAAAGAATTATAAGTGATTA+AGG | + | chr5.1:54655106-54655125 | None:intergenic | 15.0% |
| !! | AAAGAATTATAAGTGATTAA+GGG | + | chr5.1:54655105-54655124 | None:intergenic | 15.0% |
| !! | AAATAAAATAAAAGAGAAAG+TGG | + | chr5.1:54657278-54657297 | None:intergenic | 15.0% |
| !! | AAGTCATAATATGAATTAAT+GGG | + | chr5.1:54652566-54652585 | None:intergenic | 15.0% |
| !! | AATAATATACTAAAAACCTT+AGG | - | chr5.1:54653894-54653913 | MS.gene43800:CDS | 15.0% |
| !! | ATGTATATATTGTAAAACTA+TGG | + | chr5.1:54653988-54654007 | None:intergenic | 15.0% |
| !! | ATTATTCAATAATCAATTTC+AGG | - | chr5.1:54657112-54657131 | MS.gene43800:intron | 15.0% |
| !! | CAAATACATAATTAGATTAA+TGG | - | chr5.1:54656580-54656599 | MS.gene43800:intron | 15.0% |
| !! | CTATTAAAAATGAAAACTTT+GGG | - | chr5.1:54654338-54654357 | MS.gene43800:CDS | 15.0% |
| !! | GATACATCAATTAATTAATA+TGG | + | chr5.1:54656072-54656091 | None:intergenic | 15.0% |
| !! | GTTATTTATTATGCATAAAA+TGG | + | chr5.1:54656619-54656638 | None:intergenic | 15.0% |
| !! | TAATATATAAAGACAAATGT+TGG | + | chr5.1:54654926-54654945 | None:intergenic | 15.0% |
| !! | TACTTAAATTTATTTCACAA+AGG | + | chr5.1:54657614-54657633 | None:intergenic | 15.0% |
| !! | TTAATTATTATCTTCATACA+CGG | - | chr5.1:54656195-54656214 | MS.gene43800:intron | 15.0% |
| !! | TTATAGATAATTTATCCATT+TGG | + | chr5.1:54652932-54652951 | None:intergenic | 15.0% |
| !! | TTGTAAGTAAATTCAAAATT+TGG | - | chr5.1:54655138-54655157 | MS.gene43800:intron | 15.0% |
| !! | TTTATGCATAATAAATAACT+AGG | - | chr5.1:54656620-54656639 | MS.gene43800:intron | 15.0% |
| !!! | AAAAAAGTATTTGTTTTTCT+TGG | - | chr5.1:54657937-54657956 | MS.gene43800:intron | 15.0% |
| !!! | AAAACAAATACTTTTTTCTT+TGG | + | chr5.1:54657934-54657953 | None:intergenic | 15.0% |
| !!! | AACTGATGAAATTTAAAATA+TGG | - | chr5.1:54653130-54653149 | MS.gene43800:intron | 15.0% |
| !!! | ACTGATGAAATTTAAAATAT+GGG | - | chr5.1:54653131-54653150 | MS.gene43800:intron | 15.0% |
| !!! | ATCCTTATTTTATTTTTCAA+TGG | - | chr5.1:54657066-54657085 | MS.gene43800:intron | 15.0% |
| !!! | GATAATGATATAGATTTTTT+AGG | + | chr5.1:54653699-54653718 | None:intergenic | 15.0% |
| !!! | TCATCAAAAATATTTTATAG+TGG | - | chr5.1:54656767-54656786 | MS.gene43800:intron | 15.0% |
| !!! | TGGATGTTTTTATATTATTT+AGG | - | chr5.1:54654054-54654073 | MS.gene43800:CDS | 15.0% |
| !!! | TTCATTTCTAAGTTTTTTTT+GGG | - | chr5.1:54658180-54658199 | MS.gene43800:intron | 15.0% |
| !!! | TTTCATTTCTAAGTTTTTTT+TGG | - | chr5.1:54658179-54658198 | MS.gene43800:intron | 15.0% |
| !! | AAGCTTAACTTCATTATATT+TGG | - | chr5.1:54656813-54656832 | MS.gene43800:intron | 20.0% |
| !! | AAGTACATAAATATTCGATA+AGG | - | chr5.1:54655518-54655537 | MS.gene43800:CDS | 20.0% |
| !! | AAGTGAAATGCTAAAATTTA+TGG | - | chr5.1:54654197-54654216 | MS.gene43800:intron | 20.0% |
| !! | AATCTTTACCTCATATAAAT+CGG | + | chr5.1:54654420-54654439 | None:intergenic | 20.0% |
| !! | ACAAATAAATTACAAGATCT+TGG | - | chr5.1:54658336-54658355 | MS.gene43800:CDS | 20.0% |
| !! | AGTATTTATATCTAACTAAG+TGG | + | chr5.1:54654248-54654267 | None:intergenic | 20.0% |
| !! | CAAAAAAGAACAAAAAAACT+TGG | + | chr5.1:54658445-54658464 | None:intergenic | 20.0% |
| !! | CACCATTGAAAAATAAAATA+AGG | + | chr5.1:54657071-54657090 | None:intergenic | 20.0% |
| !! | CCTATTAAAAATGAAAACTT+TGG | - | chr5.1:54654337-54654356 | MS.gene43800:CDS | 20.0% |
| !! | CTTGTAGATATAAGTATTAA+CGG | + | chr5.1:54658106-54658125 | None:intergenic | 20.0% |
| !! | GAAGTCATAATATGAATTAA+TGG | + | chr5.1:54652567-54652586 | None:intergenic | 20.0% |
| !! | GATTATAGAAACTTCAAAAA+TGG | - | chr5.1:54658079-54658098 | MS.gene43800:intron | 20.0% |
| !! | TAACATATCTTCCTATTTAT+AGG | - | chr5.1:54657978-54657997 | MS.gene43800:intron | 20.0% |
| !! | TATAAATAGGAAGATATGTT+AGG | + | chr5.1:54657979-54657998 | None:intergenic | 20.0% |
| !! | TATTCAGTCAATCATATATT+TGG | - | chr5.1:54656255-54656274 | MS.gene43800:intron | 20.0% |
| !! | TCTATTAGTTCATAAATATG+TGG | - | chr5.1:54653095-54653114 | MS.gene43800:intron | 20.0% |
| !!! | AATATTCACACAAATTGTTT+TGG | + | chr5.1:54655235-54655254 | None:intergenic | 20.0% |
| !!! | ACGATTTTTAATTAATCCTA+AGG | + | chr5.1:54653913-54653932 | None:intergenic | 20.0% |
| !!! | ACTAATTCCCTTTAAAAAAT+TGG | + | chr5.1:54653336-54653355 | None:intergenic | 20.0% |
| !!! | CCAAAGTTTTCATTTTTAAT+AGG | + | chr5.1:54654340-54654359 | None:intergenic | 20.0% |
| !!! | CTAAATCATTTTTTCTTTTG+AGG | + | chr5.1:54654543-54654562 | None:intergenic | 20.0% |
| !!! | CTATTATTCTATTATTTTCG+AGG | - | chr5.1:54654128-54654147 | MS.gene43800:CDS | 20.0% |
| !!! | CTTATTTTATTTTTCAATGG+TGG | - | chr5.1:54657069-54657088 | MS.gene43800:intron | 20.0% |
| !!! | GACTACTAATATGTTTATTT+TGG | - | chr5.1:54656523-54656542 | MS.gene43800:intron | 20.0% |
| !!! | GATTTTGTTAAATCTTTTGT+AGG | - | chr5.1:54657328-54657347 | MS.gene43800:intron | 20.0% |
| !!! | GGAGTTTTTGATATATTTAT+GGG | + | chr5.1:54655076-54655095 | None:intergenic | 20.0% |
| !!! | TGGAGTTTTTGATATATTTA+TGG | + | chr5.1:54655077-54655096 | None:intergenic | 20.0% |
| !!! | TTTAAATTTCATCAGTTTTG+TGG | + | chr5.1:54653127-54653146 | None:intergenic | 20.0% |
| !!! | TTTGTTAGTTTTTTAAACTG+AGG | - | chr5.1:54652617-54652636 | MS.gene43800:intron | 20.0% |
| ! | AAAAATATTTGATGCACAAG+AGG | - | chr5.1:54655915-54655934 | MS.gene43800:intron | 25.0% |
| ! | AAATATGAAAGAGGTTATGT+TGG | - | chr5.1:54652453-54652472 | MS.gene43800:intron | 25.0% |
| ! | AATATACATACCCTTATACA+AGG | - | chr5.1:54653210-54653229 | MS.gene43800:intron | 25.0% |
| ! | AATATGAAAGAGGTTATGTT+GGG | - | chr5.1:54652454-54652473 | MS.gene43800:intron | 25.0% |
| ! | ACTTATTAGATTAGAAGTCA+TGG | + | chr5.1:54652712-54652731 | None:intergenic | 25.0% |
| ! | AGCACAGTATGTAATTAAAA+AGG | + | chr5.1:54655480-54655499 | None:intergenic | 25.0% |
| ! | ATAAGTGATTAAGGGTAAAA+TGG | + | chr5.1:54655097-54655116 | None:intergenic | 25.0% |
| ! | ATATACATACCCTTATACAA+GGG | - | chr5.1:54653211-54653230 | MS.gene43800:intron | 25.0% |
| ! | ATTAAACTCTTTCATGTGAA+AGG | - | chr5.1:54657694-54657713 | MS.gene43800:intron | 25.0% |
| ! | ATTAAATGAACAGAAACAAG+CGG | - | chr5.1:54655708-54655727 | MS.gene43800:intron | 25.0% |
| ! | ATTAACATAGTGTACATTCA+GGG | - | chr5.1:54653468-54653487 | MS.gene43800:intron | 25.0% |
| ! | ATTGAATAATCCAAACTTAG+TGG | + | chr5.1:54657102-54657121 | None:intergenic | 25.0% |
| ! | ATTTGTGTGAATATTTCAGT+TGG | - | chr5.1:54655240-54655259 | MS.gene43800:intron | 25.0% |
| ! | CATATTCATCTCCTATAAAT+AGG | + | chr5.1:54657992-54658011 | None:intergenic | 25.0% |
| ! | CCACTTATACACATATATTT+AGG | - | chr5.1:54654442-54654461 | MS.gene43800:intron | 25.0% |
| ! | CCTAAATATATGTGTATAAG+TGG | + | chr5.1:54654445-54654464 | None:intergenic | 25.0% |
| ! | CTAATTTAATTCATCAGAGT+CGG | - | chr5.1:54654691-54654710 | MS.gene43800:intron | 25.0% |
| ! | CTATTTATAGGAGATGAATA+TGG | - | chr5.1:54657990-54658009 | MS.gene43800:intron | 25.0% |
| ! | GAACATACAATATGATGATA+TGG | + | chr5.1:54653047-54653066 | None:intergenic | 25.0% |
| ! | GAATTTGATGAAATGTTATG+TGG | + | chr5.1:54652358-54652377 | None:intergenic | 25.0% |
| ! | GATATGTATTTAGAAACAGA+AGG | - | chr5.1:54654999-54655018 | MS.gene43800:CDS | 25.0% |
| ! | TAATATTGCTATGATCATCT+CGG | + | chr5.1:54655298-54655317 | None:intergenic | 25.0% |
| ! | TACTCAAATTTCTATGTTTG+TGG | - | chr5.1:54656896-54656915 | MS.gene43800:intron | 25.0% |
| ! | TAGAAATCGATATGTGTTAT+AGG | - | chr5.1:54653792-54653811 | MS.gene43800:intron | 25.0% |
| ! | TATGATGTTGAGAGTTAAAA+TGG | + | chr5.1:54658131-54658150 | None:intergenic | 25.0% |
| ! | TCAAGAATCACAAAAATTGA+CGG | + | chr5.1:54658386-54658405 | None:intergenic | 25.0% |
| ! | TCATCACATTTCTTAGTATT+TGG | + | chr5.1:54652432-54652451 | None:intergenic | 25.0% |
| ! | TGTGCACTAATTAAATTCTT+TGG | + | chr5.1:54655994-54656013 | None:intergenic | 25.0% |
| ! | TTAAAAATGAAAACTTTGGG+AGG | - | chr5.1:54654341-54654360 | MS.gene43800:CDS | 25.0% |
| ! | TTAAACTCTTTCATGTGAAA+GGG | - | chr5.1:54657695-54657714 | MS.gene43800:intron | 25.0% |
| ! | TTAGTTCATAAATATGTGGA+CGG | - | chr5.1:54653099-54653118 | MS.gene43800:intron | 25.0% |
| ! | TTGACATGACAACTTATAAT+TGG | + | chr5.1:54656022-54656041 | None:intergenic | 25.0% |
| ! | TTGTAATTTATCTGCATTCA+AGG | - | chr5.1:54653561-54653580 | MS.gene43800:CDS | 25.0% |
| ! | TTTGATATATTTATGGGTGT+AGG | + | chr5.1:54655070-54655089 | None:intergenic | 25.0% |
| !! | AAAGAAATCAGATATGGTTT+TGG | - | chr5.1:54652387-54652406 | MS.gene43800:intron | 25.0% |
| !! | ATAATTTTGCTACCAATTGT+TGG | - | chr5.1:54656684-54656703 | MS.gene43800:intron | 25.0% |
| !! | ATCAAATATGTCGATTATTG+TGG | - | chr5.1:54655605-54655624 | MS.gene43800:intron | 25.0% |
| !! | ATTTTTACTGCTCAAAGAAA+TGG | + | chr5.1:54653159-54653178 | None:intergenic | 25.0% |
| !! | TAATTTTGCTACCAATTGTT+GGG | - | chr5.1:54656685-54656704 | MS.gene43800:intron | 25.0% |
| !! | TCAAATATGTCGATTATTGT+GGG | - | chr5.1:54655606-54655625 | MS.gene43800:intron | 25.0% |
| !! | TTGTTAAATCTTTTGTAGGA+TGG | - | chr5.1:54657332-54657351 | MS.gene43800:intron | 25.0% |
| !!! | AAGTTGTGCTATTTTTCATA+TGG | + | chr5.1:54657533-54657552 | None:intergenic | 25.0% |
| !!! | TAGATATACTTACTGATTTG+TGG | + | chr5.1:54657437-54657456 | None:intergenic | 25.0% |
| !!! | TATGCGATGTATTTTTTTGA+GGG | + | chr5.1:54652904-54652923 | None:intergenic | 25.0% |
| !!! | TTATGCGATGTATTTTTTTG+AGG | + | chr5.1:54652905-54652924 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTTGTTTTCACT+TGG | + | chr5.1:54657637-54657656 | None:intergenic | 25.0% |
| !!! | TTTTGGTGACAAATAATGTT+CGG | - | chr5.1:54652404-54652423 | MS.gene43800:intron | 25.0% |
| !!! | TTTTTCGATGAGTTTTCAAT+TGG | + | chr5.1:54655900-54655919 | None:intergenic | 25.0% |
| AATTTCTTAACTGTGAATGC+AGG | - | chr5.1:54656842-54656861 | MS.gene43800:intron | 30.0% | |
| ATATAAAGTTGTAGCTCAAG+TGG | - | chr5.1:54654029-54654048 | MS.gene43800:intron | 30.0% | |
| ATTACAAAATAGTCCCTGAA+TGG | + | chr5.1:54653548-54653567 | None:intergenic | 30.0% | |
| ATTTAATCCACTTATGTGTG+AGG | - | chr5.1:54656366-54656385 | MS.gene43800:intron | 30.0% | |
| ATTTGCTTACAAGAACAAGT+TGG | - | chr5.1:54656737-54656756 | MS.gene43800:intron | 30.0% | |
| CATCTCCTATAAATAGGATT+AGG | + | chr5.1:54658042-54658061 | None:intergenic | 30.0% | |
| GATTAACATAGTGTACATTC+AGG | - | chr5.1:54653467-54653486 | MS.gene43800:intron | 30.0% | |
| GATTATTGCTCTTTCATGTA+TGG | - | chr5.1:54654852-54654871 | MS.gene43800:intron | 30.0% | |
| GCTCAGTTTATTGAAATTTC+TGG | + | chr5.1:54655209-54655228 | None:intergenic | 30.0% | |
| GTGTTCCTAATCCTATTTAT+AGG | - | chr5.1:54658034-54658053 | MS.gene43800:intron | 30.0% | |
| TAGTTCATAAATATGTGGAC+GGG | - | chr5.1:54653100-54653119 | MS.gene43800:intron | 30.0% | |
| TGACAATTGAAGAGTAGAAT+TGG | + | chr5.1:54655827-54655846 | None:intergenic | 30.0% | |
| TGTGAGAAAGAAATCAGATA+TGG | - | chr5.1:54652381-54652400 | MS.gene43800:intron | 30.0% | |
| TGTGATGACAAATATGAAAG+AGG | - | chr5.1:54652444-54652463 | MS.gene43800:intron | 30.0% | |
| TTTACTGTTGCAGATCATTA+TGG | - | chr5.1:54658485-54658504 | MS.gene43800:CDS | 30.0% | |
| ! | AAAAAGCAGTGATAGGATTT+TGG | - | chr5.1:54656420-54656439 | MS.gene43800:intron | 30.0% |
| ! | AATGGGTATAAGAATGGATT+TGG | - | chr5.1:54657163-54657182 | MS.gene43800:intron | 30.0% |
| ! | ACATACTGTGCTTACATTTT+GGG | - | chr5.1:54655488-54655507 | MS.gene43800:CDS | 30.0% |
| ! | ATATCTTTAGGTGTTGCAAT+GGG | - | chr5.1:54656867-54656886 | MS.gene43800:intron | 30.0% |
| ! | CTACAAAACCGATTTATATG+AGG | - | chr5.1:54654409-54654428 | MS.gene43800:intron | 30.0% |
| ! | TACATACTGTGCTTACATTT+TGG | - | chr5.1:54655487-54655506 | MS.gene43800:CDS | 30.0% |
| ! | TCTCTATTTCTCAAAAGAAG+TGG | - | chr5.1:54658152-54658171 | MS.gene43800:intron | 30.0% |
| !! | AATTCATTGCTTTTGTTGCT+TGG | - | chr5.1:54655736-54655755 | MS.gene43800:intron | 30.0% |
| !! | ATGGATAATGGGTATAAGAA+TGG | - | chr5.1:54657157-54657176 | MS.gene43800:intron | 30.0% |
| !! | CTCATATAAATCGGTTTTGT+AGG | + | chr5.1:54654411-54654430 | None:intergenic | 30.0% |
| !! | TGATTTTTATAGCCTTGGAA+GGG | - | chr5.1:54652525-54652544 | MS.gene43800:intron | 30.0% |
| AAGGCATACTTGAACATCAA+TGG | + | chr5.1:54655781-54655800 | None:intergenic | 35.0% | |
| AATCAAACCTCACACATAAG+TGG | + | chr5.1:54656376-54656395 | None:intergenic | 35.0% | |
| ACATCGCATAATCATCCAAA+TGG | - | chr5.1:54652914-54652933 | MS.gene43800:intron | 35.0% | |
| ACCAACATGGTCTATATTCA+GGG | + | chr5.1:54653428-54653447 | None:intergenic | 35.0% | |
| ACTAATAGAGTCTGCATTCA+GGG | - | chr5.1:54653500-54653519 | MS.gene43800:intron | 35.0% | |
| AGAGAAAGTGGAATGTATGA+AGG | + | chr5.1:54657266-54657285 | None:intergenic | 35.0% | |
| AGGCAAATTGCATATTTCAC+CGG | - | chr5.1:54654817-54654836 | MS.gene43800:intron | 35.0% | |
| AGTCAATCATATATTTGGCG+TGG | - | chr5.1:54656260-54656279 | MS.gene43800:intron | 35.0% | |
| ATTGATGTTCAAGTATGCCT+TGG | - | chr5.1:54655780-54655799 | MS.gene43800:intron | 35.0% | |
| CATATCTTTGTTCCCTCTTA+AGG | + | chr5.1:54655431-54655450 | None:intergenic | 35.0% | |
| CATGCAACAATCACACTTAA+TGG | + | chr5.1:54657140-54657159 | None:intergenic | 35.0% | |
| CATTAAGTGTGATTGTTGCA+TGG | - | chr5.1:54657138-54657157 | MS.gene43800:intron | 35.0% | |
| CTTTAGTCCCTGAATAAGAA+AGG | - | chr5.1:54653358-54653377 | MS.gene43800:CDS | 35.0% | |
| GAAGTCATGGCATATAAAGA+TGG | + | chr5.1:54652699-54652718 | None:intergenic | 35.0% | |
| GACTACTCCTTTCTTATTCA+GGG | + | chr5.1:54653368-54653387 | None:intergenic | 35.0% | |
| GACTTCAATCTTCTTGAAAC+TGG | - | chr5.1:54657185-54657204 | MS.gene43800:intron | 35.0% | |
| GATGATGAAAAAGCAGTGAT+AGG | - | chr5.1:54656413-54656432 | MS.gene43800:intron | 35.0% | |
| GCATTCAAGGACTAAAATGA+CGG | - | chr5.1:54653574-54653593 | MS.gene43800:CDS | 35.0% | |
| GGAACTTCACACTATTTGAA+AGG | - | chr5.1:54657353-54657372 | MS.gene43800:intron | 35.0% | |
| GTGATTGTTGCATGGATAAT+GGG | - | chr5.1:54657146-54657165 | MS.gene43800:intron | 35.0% | |
| GTGTGAATATTTCAGTTGGA+GGG | - | chr5.1:54655244-54655263 | MS.gene43800:intron | 35.0% | |
| GTTCTCCAAATCTTCATTCA+TGG | + | chr5.1:54652320-54652339 | None:intergenic | 35.0% | |
| TAATTACACTTACCCTTCCA+AGG | + | chr5.1:54652540-54652559 | None:intergenic | 35.0% | |
| TAGGAAGATATGTTAGGAGT+AGG | + | chr5.1:54657973-54657992 | None:intergenic | 35.0% | |
| TATAGTGCACCATCAAACAA+AGG | - | chr5.1:54658411-54658430 | MS.gene43800:CDS | 35.0% | |
| TCACAAAAATTGACGGTTCA+TGG | + | chr5.1:54658379-54658398 | None:intergenic | 35.0% | |
| TCATATATTTGGCGTGGTTA+TGG | - | chr5.1:54656266-54656285 | MS.gene43800:intron | 35.0% | |
| TCGAACCATGAATGAAGATT+TGG | - | chr5.1:54652312-54652331 | MS.gene43800:intron | 35.0% | |
| TCTTCATTCATGGTTCGAAA+TGG | + | chr5.1:54652310-54652329 | None:intergenic | 35.0% | |
| TGAATGCAGGACATATCTTT+AGG | - | chr5.1:54656855-54656874 | MS.gene43800:intron | 35.0% | |
| TGACTACTCCTTTCTTATTC+AGG | + | chr5.1:54653369-54653388 | None:intergenic | 35.0% | |
| TGTGATTGTTGCATGGATAA+TGG | - | chr5.1:54657145-54657164 | MS.gene43800:intron | 35.0% | |
| TGTGTGAATATTTCAGTTGG+AGG | - | chr5.1:54655243-54655262 | MS.gene43800:intron | 35.0% | |
| TTATTTAGGTCCCTTAACTG+TGG | - | chr5.1:54654068-54654087 | MS.gene43800:CDS | 35.0% | |
| TTGCAATTTCTCTGCATTGA+AGG | + | chr5.1:54653399-54653418 | None:intergenic | 35.0% | |
| ! | CATATCTTTAGGTGTTGCAA+TGG | - | chr5.1:54656866-54656885 | MS.gene43800:intron | 35.0% |
| ! | CGAGCTTTCTTGCAATTTTA+TGG | - | chr5.1:54653009-54653028 | MS.gene43800:intron | 35.0% |
| ! | CGATTTCTACCTTTTTCTCA+CGG | + | chr5.1:54653781-54653800 | None:intergenic | 35.0% |
| ! | GAATTCACTCCTTTGTTTGA+TGG | + | chr5.1:54658423-54658442 | None:intergenic | 35.0% |
| ! | GTAGTTGAGTCTAAAACAAC+CGG | - | chr5.1:54653931-54653950 | MS.gene43800:intron | 35.0% |
| ! | GTCTCATTTTCACCATAGTT+TGG | + | chr5.1:54657850-54657869 | None:intergenic | 35.0% |
| ! | TTTTAGGCACTACGTATACT+AGG | + | chr5.1:54653683-54653702 | None:intergenic | 35.0% |
| ! | TTTTTCTTTGGACAACCAAC+AGG | + | chr5.1:54657922-54657941 | None:intergenic | 35.0% |
| !! | AGGTCATCTTTTGTTTGATG+TGG | - | chr5.1:54654462-54654481 | MS.gene43800:intron | 35.0% |
| !! | ATGTGTGAGGTTTGATTTTC+AGG | - | chr5.1:54656379-54656398 | MS.gene43800:intron | 35.0% |
| !! | ATTTTTGCTTTGAGCCTACT+TGG | - | chr5.1:54654609-54654628 | MS.gene43800:intron | 35.0% |
| !! | CTGATTTTTATAGCCTTGGA+AGG | - | chr5.1:54652524-54652543 | MS.gene43800:intron | 35.0% |
| !! | CTTACAAGAACAAGTTGGTA+CGG | - | chr5.1:54656742-54656761 | MS.gene43800:intron | 35.0% |
| !!! | AGATGGTTTTGTGATTACTG+AGG | + | chr5.1:54652682-54652701 | None:intergenic | 35.0% |
| !!! | GATTTTGGAGTGCATTTAGT+TGG | - | chr5.1:54656435-54656454 | MS.gene43800:intron | 35.0% |
| !!! | GTAATCTCACTTTTTTGTGC+TGG | + | chr5.1:54657751-54657770 | None:intergenic | 35.0% |
| !!! | TAAGCTTGTTGTGCTTTTTC+CGG | - | chr5.1:54652480-54652499 | MS.gene43800:intron | 35.0% |
| AAATCAGCAGCAACAGCTAA+AGG | + | chr5.1:54652511-54652530 | None:intergenic | 40.0% | |
| AAGTTGTAGCTCAAGTGGTT+TGG | - | chr5.1:54654034-54654053 | MS.gene43800:intron | 40.0% | |
| ACATGCAAACTTACTCAGTG+AGG | + | chr5.1:54654665-54654684 | None:intergenic | 40.0% | |
| AGACCATGTTGGTCAATTTC+AGG | - | chr5.1:54653435-54653454 | MS.gene43800:intron | 40.0% | |
| AGAGCAATAATCGTACCTGT+TGG | + | chr5.1:54654844-54654863 | None:intergenic | 40.0% | |
| AGAGTTTCGAACCACAGTTA+AGG | + | chr5.1:54654103-54654122 | None:intergenic | 40.0% | |
| AGGCTCAAAGCAAAAATCCA+AGG | + | chr5.1:54654606-54654625 | None:intergenic | 40.0% | |
| AGTGATAGCAATCCTCTATG+TGG | + | chr5.1:54657881-54657900 | None:intergenic | 40.0% | |
| AGTGCATTTAGTTGGTTGGT+GGG | - | chr5.1:54656443-54656462 | MS.gene43800:intron | 40.0% | |
| ATTACTGAGGTGGTGAAGTT+AGG | + | chr5.1:54652669-54652688 | None:intergenic | 40.0% | |
| CAAGAGAAGGTTTGAGAGAA+TGG | + | chr5.1:54655370-54655389 | None:intergenic | 40.0% | |
| CAAGTGCTACCCTTGTATAA+GGG | + | chr5.1:54653223-54653242 | None:intergenic | 40.0% | |
| CATTCTCTCAAACCTTCTCT+TGG | - | chr5.1:54655368-54655387 | MS.gene43800:CDS | 40.0% | |
| CTTATACAAGGGTAGCACTT+GGG | - | chr5.1:54653222-54653241 | MS.gene43800:intron | 40.0% | |
| CTTCTTGAAACTGGATGTCT+TGG | - | chr5.1:54657194-54657213 | MS.gene43800:intron | 40.0% | |
| GACCAACATGGTCTATATTC+AGG | + | chr5.1:54653429-54653448 | None:intergenic | 40.0% | |
| GACCATGTTGGTCAATTTCA+GGG | - | chr5.1:54653436-54653455 | MS.gene43800:intron | 40.0% | |
| GACTAATAGAGTCTGCATTC+AGG | - | chr5.1:54653499-54653518 | MS.gene43800:intron | 40.0% | |
| GAGCAATAATCGTACCTGTT+GGG | + | chr5.1:54654843-54654862 | None:intergenic | 40.0% | |
| GAGTTTCGAACCACAGTTAA+GGG | + | chr5.1:54654102-54654121 | None:intergenic | 40.0% | |
| GGACCTAAAACCACAGTTAA+GGG | + | chr5.1:54654081-54654100 | None:intergenic | 40.0% | |
| GTGATAGCAATCCTCTATGT+GGG | + | chr5.1:54657880-54657899 | None:intergenic | 40.0% | |
| GTGCTTTCTGAGTATGTTGT+GGG | - | chr5.1:54656485-54656504 | MS.gene43800:intron | 40.0% | |
| TCCAAACACACACCAAACTA+TGG | - | chr5.1:54657835-54657854 | MS.gene43800:intron | 40.0% | |
| TCCCTGAATATAGACCATGT+TGG | - | chr5.1:54653424-54653443 | MS.gene43800:CDS | 40.0% | |
| TGAACATCAATGGCAGCAAA+TGG | + | chr5.1:54655771-54655790 | None:intergenic | 40.0% | |
| TGGCTTAGCAAACCTTAAGA+GGG | - | chr5.1:54655416-54655435 | MS.gene43800:CDS | 40.0% | |
| TGTGCTTTCTGAGTATGTTG+TGG | - | chr5.1:54656484-54656503 | MS.gene43800:intron | 40.0% | |
| TGTTACAGCCTTCACTTTAC+AGG | - | chr5.1:54657229-54657248 | MS.gene43800:intron | 40.0% | |
| TTGGAGTGCATTTAGTTGGT+TGG | - | chr5.1:54656439-54656458 | MS.gene43800:intron | 40.0% | |
| ! | AGACTCATTTTCCCACATAG+AGG | - | chr5.1:54657866-54657885 | MS.gene43800:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+AGG | + | chr5.1:54653372-54653353 | None:intergenic | 40.0% |
| ! | TCAAACCTTCTCTTGGTTCT+AGG | - | chr5.1:54655375-54655394 | MS.gene43800:CDS | 40.0% |
| ! | TGGCTTTACACCACTAAGTT+TGG | - | chr5.1:54657089-54657108 | MS.gene43800:intron | 40.0% |
| !! | ACCATAGTTTGGTGTGTGTT+TGG | + | chr5.1:54657839-54657858 | None:intergenic | 40.0% |
| !! | AGCCAGCAGTATTTTTATGG+AGG | - | chr5.1:54653960-54653979 | MS.gene43800:intron | 40.0% |
| !! | CCAGCAGTATTTTTATGGAG+GGG | - | chr5.1:54653962-54653981 | MS.gene43800:intron | 40.0% |
| !! | GCCAGCAGTATTTTTATGGA+GGG | - | chr5.1:54653961-54653980 | MS.gene43800:intron | 40.0% |
| !! | TGTGAGGTTTGATTTTCAGG+TGG | - | chr5.1:54656382-54656401 | MS.gene43800:intron | 40.0% |
| !!! | GCTGCTGATTTTTATAGCCT+TGG | - | chr5.1:54652520-54652539 | MS.gene43800:intron | 40.0% |
| !!! | TGGTTTTGTGATTACTGAGG+TGG | + | chr5.1:54652679-54652698 | None:intergenic | 40.0% |
| AATAATCGTACCTGTTGGGC+CGG | + | chr5.1:54654839-54654858 | None:intergenic | 45.0% | |
| ACTAGGCTGCTTCAGATTCT+TGG | - | chr5.1:54656637-54656656 | MS.gene43800:intron | 45.0% | |
| ACTGACAGAGTCTCCATTCA+GGG | - | chr5.1:54653532-54653551 | MS.gene43800:intron | 45.0% | |
| ATGTTCAAGTATGCCTTGGC+GGG | - | chr5.1:54655784-54655803 | MS.gene43800:intron | 45.0% | |
| CCAAGTGCTACCCTTGTATA+AGG | + | chr5.1:54653224-54653243 | None:intergenic | 45.0% | |
| CCCCTCCATAAAAATACTGC+TGG | + | chr5.1:54653965-54653984 | None:intergenic | 45.0% | |
| CCTGTACTGCATGAACTTGA+AGG | - | chr5.1:54654797-54654816 | MS.gene43800:intron | 45.0% | |
| CCTTATACAAGGGTAGCACT+TGG | - | chr5.1:54653221-54653240 | MS.gene43800:intron | 45.0% | |
| CTAGGCTGCTTCAGATTCTT+GGG | - | chr5.1:54656638-54656657 | MS.gene43800:intron | 45.0% | |
| CTTTGATCGCCGTGAGAAAA+AGG | - | chr5.1:54653769-54653788 | MS.gene43800:intron | 45.0% | |
| GAGTGCATTTAGTTGGTTGG+TGG | - | chr5.1:54656442-54656461 | MS.gene43800:intron | 45.0% | |
| GATGTTCAAGTATGCCTTGG+CGG | - | chr5.1:54655783-54655802 | MS.gene43800:intron | 45.0% | |
| GCAAAAATCCAAGGCTACGA+TGG | + | chr5.1:54654597-54654616 | None:intergenic | 45.0% | |
| GCACTACGTATACTAGGCAA+TGG | + | chr5.1:54653677-54653696 | None:intergenic | 45.0% | |
| GGGACCTAAAACCACAGTTA+AGG | + | chr5.1:54654082-54654101 | None:intergenic | 45.0% | |
| GGGCTTCTAAATGCAACTTG+TGG | - | chr5.1:54655264-54655283 | MS.gene43800:intron | 45.0% | |
| GTATGTTGTGGGAACGATTG+AGG | - | chr5.1:54656496-54656515 | MS.gene43800:intron | 45.0% | |
| GTCCCTGAAATTGACCAACA+TGG | + | chr5.1:54653441-54653460 | None:intergenic | 45.0% | |
| GTGGCTTAGCAAACCTTAAG+AGG | - | chr5.1:54655415-54655434 | MS.gene43800:CDS | 45.0% | |
| GTTGTCAAGTTCTCCTTGCT+TGG | - | chr5.1:54655342-54655361 | MS.gene43800:intron | 45.0% | |
| TAGGCTGCTTCAGATTCTTG+GGG | - | chr5.1:54656639-54656658 | MS.gene43800:intron | 45.0% | |
| TATGCTATCCGAGTCAACTG+AGG | + | chr5.1:54657808-54657827 | None:intergenic | 45.0% | |
| TCTGCAGCATTCCCAACAAT+TGG | + | chr5.1:54656699-54656718 | None:intergenic | 45.0% | |
| TGAGAGAATGGAACCAAGCA+AGG | + | chr5.1:54655358-54655377 | None:intergenic | 45.0% | |
| TGTGCAGACCTGTAAAGTGA+AGG | + | chr5.1:54657240-54657259 | None:intergenic | 45.0% | |
| ! | CCTTCAAGTTCATGCAGTAC+AGG | + | chr5.1:54654800-54654819 | None:intergenic | 45.0% |
| ! | GGTCCCTTAACTGTGGTTTT+AGG | - | chr5.1:54654075-54654094 | MS.gene43800:CDS | 45.0% |
| ! | GTTGAGTCTAAAACAACCGG+TGG | - | chr5.1:54653934-54653953 | MS.gene43800:intron | 45.0% |
| ! | GTTTTTCTCCATCGTAGCCT+TGG | - | chr5.1:54654586-54654605 | MS.gene43800:intron | 45.0% |
| !! | CGGAGCCAGCAGTATTTTTA+TGG | - | chr5.1:54653957-54653976 | MS.gene43800:intron | 45.0% |
| !! | TTGGTTGGTGGGTATGACAT+TGG | - | chr5.1:54656454-54656473 | MS.gene43800:intron | 45.0% |
| !!! | GGTTTTAGGTCCCTTAACTG+TGG | - | chr5.1:54654089-54654108 | MS.gene43800:CDS | 45.0% |
| !!! | GTGCTTACATTTTGGGACGA+AGG | - | chr5.1:54655495-54655514 | MS.gene43800:CDS | 45.0% |
| !! | TTCAATAATTAATTATTTAA+AGG | + | chr5.1:54653876-54653895 | None:intergenic | 5.0% |
| !!! | ATAAATTTAATATAACTTTT+AGG | - | chr5.1:54654296-54654315 | MS.gene43800:CDS | 5.0% |
| AAAGCCACTTGTGACGTGGT+TGG | + | chr5.1:54653272-54653291 | None:intergenic | 50.0% | |
| AAGCTGACACGTTCAGCTAG+GGG | + | chr5.1:54654642-54654661 | None:intergenic | 50.0% | |
| AGCTGCCTAGAACCAAGAGA+AGG | + | chr5.1:54655383-54655402 | None:intergenic | 50.0% | |
| ATGGGTGTAGGATCTCAAGC+TGG | + | chr5.1:54655058-54655077 | None:intergenic | 50.0% | |
| CAATCTCTCCTTGCTCCTGT+TGG | - | chr5.1:54657904-54657923 | MS.gene43800:intron | 50.0% | |
| CCTCTCAACCTCAGTTGACT+CGG | - | chr5.1:54657797-54657816 | MS.gene43800:intron | 50.0% | |
| GAAGAAAGCCACTTGTGACG+TGG | + | chr5.1:54653276-54653295 | None:intergenic | 50.0% | |
| GAAGCTGACACGTTCAGCTA+GGG | + | chr5.1:54654643-54654662 | None:intergenic | 50.0% | |
| GACGGCTCGTTTCCTATTCA+GGG | - | chr5.1:54653592-54653611 | MS.gene43800:CDS | 50.0% | |
| GACTGACAGAGTCTCCATTC+AGG | - | chr5.1:54653531-54653550 | MS.gene43800:intron | 50.0% | |
| GCAACAGCTAAAGGAACAGC+CGG | + | chr5.1:54652502-54652521 | None:intergenic | 50.0% | |
| TGACGGCTCGTTTCCTATTC+AGG | - | chr5.1:54653591-54653610 | MS.gene43800:CDS | 50.0% | |
| TGGGTGTAGGATCTCAAGCT+GGG | + | chr5.1:54655057-54655076 | None:intergenic | 50.0% | |
| TGTGTTCAGAGACAGAGCCA+GGG | + | chr5.1:54654386-54654405 | None:intergenic | 50.0% | |
| TTGGACAACCAACAGGAGCA+AGG | + | chr5.1:54657915-54657934 | None:intergenic | 50.0% | |
| TTGTGTTCAGAGACAGAGCC+AGG | + | chr5.1:54654387-54654406 | None:intergenic | 50.0% | |
| ! | GAGTCTAAAACAACCGGTGG+CGG | - | chr5.1:54653937-54653956 | MS.gene43800:intron | 50.0% |
| !! | GACACTCTGGTTGGTGACAT+TGG | - | chr5.1:54653246-54653265 | MS.gene43800:intron | 50.0% |
| !! | GGTTTGCTAAGCCACCACAA+AGG | + | chr5.1:54655410-54655429 | None:intergenic | 50.0% |
| AGAATGATTGCCACCCGCCA+AGG | + | chr5.1:54655800-54655819 | None:intergenic | 55.0% | |
| CACTTGGGTGACACTCTGGT+TGG | - | chr5.1:54653237-54653256 | MS.gene43800:intron | 55.0% | |
| CCGAGTCAACTGAGGTTGAG+AGG | + | chr5.1:54657800-54657819 | None:intergenic | 55.0% | |
| CTAGGCAGCTCACTCCTTTG+TGG | - | chr5.1:54655393-54655412 | MS.gene43800:CDS | 55.0% | |
| CTAGGGGAGCAAGTCCAAGT+AGG | + | chr5.1:54654626-54654645 | None:intergenic | 55.0% | |
| GCATATTTCACCGGCCCAAC+AGG | - | chr5.1:54654826-54654845 | MS.gene43800:intron | 55.0% | |
| GGAAGCTGACACGTTCAGCT+AGG | + | chr5.1:54654644-54654663 | None:intergenic | 55.0% | |
| GGGAATGCTGCAGAACATGC+TGG | - | chr5.1:54656705-54656724 | MS.gene43800:intron | 55.0% | |
| GGGTGTAGGATCTCAAGCTG+GGG | + | chr5.1:54655056-54655075 | None:intergenic | 55.0% | |
| GGTGTAGGATCTCAAGCTGG+GGG | + | chr5.1:54655055-54655074 | None:intergenic | 55.0% | |
| GTAGCACTTGGGTGACACTC+TGG | - | chr5.1:54653233-54653252 | MS.gene43800:intron | 55.0% | |
| GTGTTCAGAGACAGAGCCAG+GGG | + | chr5.1:54654385-54654404 | None:intergenic | 55.0% | |
| TGTTCAGAGACAGAGCCAGG+GGG | + | chr5.1:54654384-54654403 | None:intergenic | 55.0% | |
| TTCAAGTATGCCTTGGCGGG+TGG | - | chr5.1:54655787-54655806 | MS.gene43800:intron | 55.0% | |
| TTGGCCAACCACGTCACAAG+TGG | - | chr5.1:54653265-54653284 | MS.gene43800:intron | 55.0% | |
| ! | GATCTCAAGCTGGGGGTACA+AGG | + | chr5.1:54655048-54655067 | None:intergenic | 55.0% |
| AGACAGAGCCAGGGGGACAT+GGG | + | chr5.1:54654377-54654396 | None:intergenic | 60.0% | |
| ATGTACCTCCCATGTCCCCC+TGG | - | chr5.1:54654366-54654385 | MS.gene43800:CDS | 60.0% | |
| GGCAGCTCACTCCTTTGTGG+TGG | - | chr5.1:54655396-54655415 | MS.gene43800:CDS | 60.0% | |
| ! | AGGGGGACATGGGAGGTACA+TGG | + | chr5.1:54654367-54654386 | None:intergenic | 60.0% |
| !! | AATACTGCTGGCTCCGCCAC+CGG | + | chr5.1:54653953-54653972 | None:intergenic | 60.0% |
| GAGACAGAGCCAGGGGGACA+TGG | + | chr5.1:54654378-54654397 | None:intergenic | 65.0% | |
| CAGAGCCAGGGGGACATGGG+AGG | + | chr5.1:54654374-54654393 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54652277 | 54658523 | 54652277 | ID=MS.gene43800 |
| chr5.1 | mRNA | 54652277 | 54658523 | 54652277 | ID=MS.gene43800.t1;Parent=MS.gene43800 |
| chr5.1 | exon | 54658254 | 54658523 | 54658254 | ID=MS.gene43800.t1.exon1;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54658254 | 54658523 | 54658254 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54656130 | 54656197 | 54656130 | ID=MS.gene43800.t1.exon2;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54656130 | 54656197 | 54656130 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54655953 | 54655981 | 54655953 | ID=MS.gene43800.t1.exon3;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54655953 | 54655981 | 54655953 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54655345 | 54655541 | 54655345 | ID=MS.gene43800.t1.exon4;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54655345 | 54655541 | 54655345 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54654864 | 54655079 | 54654864 | ID=MS.gene43800.t1.exon5;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54654864 | 54655079 | 54654864 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54654283 | 54654399 | 54654283 | ID=MS.gene43800.t1.exon6;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54654283 | 54654399 | 54654283 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54654042 | 54654158 | 54654042 | ID=MS.gene43800.t1.exon7;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54654042 | 54654158 | 54654042 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54653883 | 54653936 | 54653883 | ID=MS.gene43800.t1.exon8;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54653883 | 54653936 | 54653883 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54653550 | 54653666 | 54653550 | ID=MS.gene43800.t1.exon9;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54653550 | 54653666 | 54653550 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54653357 | 54653450 | 54653357 | ID=MS.gene43800.t1.exon10;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54653357 | 54653450 | 54653357 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| chr5.1 | exon | 54652277 | 54652302 | 54652277 | ID=MS.gene43800.t1.exon11;Parent=MS.gene43800.t1 |
| chr5.1 | CDS | 54652277 | 54652302 | 54652277 | ID=cds.MS.gene43800.t1;Parent=MS.gene43800.t1 |
| Gene Sequence |
| Protein sequence |
