Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44024.t1 | XP_024637976.1 | 92.9 | 170 | 12 | 0 | 1 | 170 | 1 | 170 | 9.10E-83 | 316.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44024.t1 | Q94BU8 | 57.2 | 159 | 62 | 2 | 11 | 163 | 25 | 183 | 1.8e-47 | 190.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44024.t1 | A0A396JWV1 | 96.8 | 158 | 5 | 0 | 13 | 170 | 25 | 182 | 9.4e-82 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04921 | MS.gene44024 | 0.801302 | 9.60E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene44024 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene050864 | MS.gene44024 | 0.816938 | 4.27E-52 | -1.69E-46 |
| MS.gene052494 | MS.gene44024 | 0.813662 | 2.28E-51 | -1.69E-46 |
| MS.gene054643 | MS.gene44024 | 0.802821 | 4.68E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene44024 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene055331 | MS.gene44024 | 0.841229 | 5.39E-58 | -1.69E-46 |
| MS.gene056266 | MS.gene44024 | -0.83929 | 1.73E-57 | -1.69E-46 |
| MS.gene060076 | MS.gene44024 | 0.834695 | 2.58E-56 | -1.69E-46 |
| MS.gene060359 | MS.gene44024 | 0.809823 | 1.56E-50 | -1.69E-46 |
| MS.gene06042 | MS.gene44024 | 0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene44024 | 0.848106 | 7.57E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44024.t1 | MTR_1g081450 | 79.275 | 193 | 5 | 1 | 13 | 170 | 30 | 222 | 9.98e-106 | 301 |
| MS.gene44024.t1 | MTR_1g081420 | 82.500 | 160 | 26 | 2 | 1 | 159 | 1 | 159 | 8.58e-94 | 271 |
| MS.gene44024.t1 | MTR_1g081550 | 68.387 | 155 | 43 | 2 | 13 | 161 | 11 | 165 | 7.30e-74 | 219 |
| MS.gene44024.t1 | MTR_2g045280 | 60.843 | 166 | 59 | 2 | 4 | 163 | 33 | 198 | 2.09e-67 | 204 |
| MS.gene44024.t1 | MTR_4g124190 | 59.639 | 166 | 61 | 2 | 4 | 163 | 19 | 184 | 1.39e-66 | 201 |
| MS.gene44024.t1 | MTR_3g005755 | 51.656 | 151 | 43 | 4 | 11 | 161 | 75 | 195 | 7.68e-38 | 132 |
| MS.gene44024.t1 | MTR_1g081440 | 61.290 | 62 | 18 | 1 | 13 | 74 | 18 | 73 | 3.50e-19 | 77.8 |
| MS.gene44024.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 861 | 953 | 3.98e-13 | 66.6 |
| MS.gene44024.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 861 | 953 | 4.13e-13 | 66.6 |
| MS.gene44024.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 1054 | 1146 | 6.28e-13 | 66.2 |
| MS.gene44024.t1 | MTR_4g012000 | 38.710 | 93 | 55 | 1 | 25 | 115 | 1054 | 1146 | 6.29e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44024.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 10 | 163 | 24 | 183 | 5.68e-64 | 194 |
| MS.gene44024.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 10 | 163 | 43 | 202 | 1.10e-63 | 194 |
| MS.gene44024.t1 | AT5G28050 | 56.875 | 160 | 63 | 2 | 10 | 163 | 129 | 288 | 4.06e-63 | 196 |
| MS.gene44024.t1 | AT3G05300 | 54.464 | 112 | 42 | 3 | 56 | 161 | 1 | 109 | 3.15e-36 | 122 |
| MS.gene44024.t1 | AT1G68720 | 37.736 | 106 | 63 | 2 | 12 | 115 | 1104 | 1208 | 1.20e-14 | 71.2 |
Find 26 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGATAACGTTTCCCTTGC+TGG | 0.263455 | 1.3:+57559953 | MS.gene44024:CDS |
| ATTGGATTTAGTAATTATAT+TGG | 0.292521 | 1.3:+57560182 | MS.gene44024:CDS |
| ATCAAGCAGAGAATGGTTTA+TGG | 0.295789 | 1.3:+57560134 | MS.gene44024:intron |
| GGAGAAGCTGCAAGATCAAT+TGG | 0.402712 | 1.3:+57560164 | MS.gene44024:CDS |
| GCTGCTGCTTCTGCTGCAAA+CGG | 0.419701 | 1.3:+57557578 | MS.gene44024:CDS |
| CGAACAATCAGTGCACCATA+TGG | 0.427952 | 1.3:-57558627 | None:intergenic |
| GAACCTTGTCCAATGTGCTT+TGG | 0.452078 | 1.3:+57559998 | MS.gene44024:CDS |
| GCATATGAAGCTGTTGAATC+TGG | 0.453061 | 1.3:+57558594 | MS.gene44024:CDS |
| TTTAGTAATTATATTGGCAA+GGG | 0.530272 | 1.3:+57560188 | MS.gene44024:CDS |
| GAACAATCAGTGCACCATAT+GGG | 0.543114 | 1.3:-57558626 | None:intergenic |
| ATTTAGTAATTATATTGGCA+AGG | 0.547598 | 1.3:+57560187 | MS.gene44024:CDS |
| ATGATCTCAGCATGAGCAGT+TGG | 0.550399 | 1.3:-57558702 | None:intergenic |
| TGATCTTGCAGCTTCTCCTG+TGG | 0.555500 | 1.3:-57560159 | None:intergenic |
| AGAATGGTTTATGGAGCCAC+AGG | 0.555557 | 1.3:+57560143 | MS.gene44024:CDS |
| GAAGACAAAGGACAAGGTAA+AGG | 0.557065 | 1.3:+57560283 | MS.gene44024:CDS |
| CATCATTCATCACATGGAGC+AGG | 0.570009 | 1.3:+57557556 | None:intergenic |
| TCTGGTGATGGATACCCATA+TGG | 0.575775 | 1.3:+57558612 | MS.gene44024:CDS |
| TGAATAGCACCAAAGCACAT+TGG | 0.603526 | 1.3:-57560007 | None:intergenic |
| AGAAGTATTTGAGAAGACAA+AGG | 0.606818 | 1.3:+57560271 | MS.gene44024:CDS |
| GAAGCTGTTGAATCTGGTGA+TGG | 0.621594 | 1.3:+57558600 | MS.gene44024:CDS |
| TGTACATTTCACAGCCAGCA+AGG | 0.622518 | 1.3:-57559967 | None:intergenic |
| GTACATTTCACAGCCAGCAA+GGG | 0.636395 | 1.3:-57559966 | None:intergenic |
| TCTCGTTATCCCAGCTGCAG+AGG | 0.636736 | 1.3:+57558533 | MS.gene44024:intron |
| GCACCAAAGCACATTGGACA+AGG | 0.643218 | 1.3:-57560001 | None:intergenic |
| ATTTGAGAAGACAAAGGACA+AGG | 0.678760 | 1.3:+57560277 | MS.gene44024:CDS |
| TGAGATCATTGCTATAAGAG+AGG | 0.679141 | 1.3:+57558716 | MS.gene44024:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTTAACTATACTTTA+CGG | - | chr1.3:57558240-57558259 | None:intergenic | 10.0% |
| !!! | AAATGTATGATTTTTTTTAA+TGG | - | chr1.3:57558927-57558946 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTTTTTTGAAA+CGG | - | chr1.3:57559687-57559706 | None:intergenic | 10.0% |
| !! | AAAAAACACAAAATAACAAA+TGG | - | chr1.3:57559069-57559088 | None:intergenic | 15.0% |
| !! | AAATATAGTTCAAATTTCAT+CGG | + | chr1.3:57559276-57559295 | MS.gene44024:intron | 15.0% |
| !! | ATAAAAAATTGATGTTATAG+CGG | - | chr1.3:57557951-57557970 | None:intergenic | 15.0% |
| !! | ATTGGATTTAGTAATTATAT+TGG | + | chr1.3:57560182-57560201 | MS.gene44024:CDS | 15.0% |
| !! | TAGCTTATTAAAAACATAAA+AGG | + | chr1.3:57558022-57558041 | MS.gene44024:intron | 15.0% |
| !! | TTATTACTAATACAAAATTG+TGG | - | chr1.3:57557680-57557699 | None:intergenic | 15.0% |
| !!! | AATAATTTGTTAAATGAAAG+AGG | + | chr1.3:57558957-57558976 | MS.gene44024:intron | 15.0% |
| !!! | TATTCATTTTTCAAAAATCA+AGG | + | chr1.3:57560024-57560043 | MS.gene44024:CDS | 15.0% |
| !!! | TTTAAAATATTAACAAAGTC+AGG | + | chr1.3:57558087-57558106 | MS.gene44024:intron | 15.0% |
| !! | AACAAAATTGAAATACAAAC+AGG | - | chr1.3:57559612-57559631 | None:intergenic | 20.0% |
| !! | AATTTGAACTATATTTCATG+AGG | - | chr1.3:57559272-57559291 | None:intergenic | 20.0% |
| !! | ATGAGTTATCATTTAGATTA+TGG | + | chr1.3:57557719-57557738 | MS.gene44024:intron | 20.0% |
| !! | ATTCCAATTAGTATAACATA+AGG | - | chr1.3:57559911-57559930 | None:intergenic | 20.0% |
| !! | ATTTAGTAATTATATTGGCA+AGG | + | chr1.3:57560187-57560206 | MS.gene44024:CDS | 20.0% |
| !! | ATTTGAATAACAAATTGAGA+AGG | + | chr1.3:57559802-57559821 | MS.gene44024:intron | 20.0% |
| !! | TAAAAAATTGATGTTATAGC+GGG | - | chr1.3:57557950-57557969 | None:intergenic | 20.0% |
| !! | TAAACAGAAATAATGATATC+TGG | + | chr1.3:57559138-57559157 | MS.gene44024:intron | 20.0% |
| !! | TTACCTTATGTTATACTAAT+TGG | + | chr1.3:57559905-57559924 | MS.gene44024:intron | 20.0% |
| !! | TTTAGTAATTATATTGGCAA+GGG | + | chr1.3:57560188-57560207 | MS.gene44024:CDS | 20.0% |
| !!! | ATCTAATTGAGAAACTTTTA+AGG | + | chr1.3:57558045-57558064 | MS.gene44024:intron | 20.0% |
| !!! | CTTCATATATTATTGCTTTT+TGG | + | chr1.3:57558471-57558490 | MS.gene44024:intron | 20.0% |
| ! | AAAAATGAGATCATTCAATC+AGG | - | chr1.3:57557763-57557782 | None:intergenic | 25.0% |
| ! | AGAAATAATGATATCTGGAT+CGG | + | chr1.3:57559143-57559162 | MS.gene44024:intron | 25.0% |
| ! | ATGCCAAAGTAAAGAATTTA+GGG | - | chr1.3:57559109-57559128 | None:intergenic | 25.0% |
| ! | TATATATCAATGTGTCTATG+AGG | + | chr1.3:57559227-57559246 | MS.gene44024:intron | 25.0% |
| ! | TATGCCAAAGTAAAGAATTT+AGG | - | chr1.3:57559110-57559129 | None:intergenic | 25.0% |
| ! | TTCGAGATAAAAAAGATAGA+TGG | + | chr1.3:57560227-57560246 | MS.gene44024:CDS | 25.0% |
| !! | AAATTTTATTAGGCAGAACT+CGG | - | chr1.3:57559662-57559681 | None:intergenic | 25.0% |
| !! | AATACTTAGAAGTACATTTC+AGG | - | chr1.3:57558512-57558531 | None:intergenic | 25.0% |
| !! | ATAACTCATAAAAGTGTAAG+TGG | - | chr1.3:57557708-57557727 | None:intergenic | 25.0% |
| !! | TGAAACGGCTAAATTTTATT+AGG | - | chr1.3:57559672-57559691 | None:intergenic | 25.0% |
| !!! | ATATTATTGCTTTTTGGTCA+AGG | + | chr1.3:57558477-57558496 | MS.gene44024:intron | 25.0% |
| !!! | TCATTATTTCTATACCATCA+TGG | + | chr1.3:57558394-57558413 | MS.gene44024:intron | 25.0% |
| AAGAATTTAGGGAGAAACAA+AGG | - | chr1.3:57559098-57559117 | None:intergenic | 30.0% | |
| ACAGTTGTTTGTACTTTGAA+TGG | + | chr1.3:57559301-57559320 | MS.gene44024:intron | 30.0% | |
| ATGATTGATATGGTTGAATG+AGG | + | chr1.3:57559025-57559044 | MS.gene44024:intron | 30.0% | |
| GAATAACAAATTGAGAAGGT+TGG | + | chr1.3:57559806-57559825 | MS.gene44024:intron | 30.0% | |
| GCAAAACACAAAAAAACAGA+TGG | - | chr1.3:57559393-57559412 | None:intergenic | 30.0% | |
| GTAATTCGACATTTCTTTGA+GGG | + | chr1.3:57558784-57558803 | MS.gene44024:intron | 30.0% | |
| GTTTCCAACAATGATTGATA+TGG | + | chr1.3:57559015-57559034 | MS.gene44024:intron | 30.0% | |
| TATTGTGAAGACAAAATGAG+AGG | - | chr1.3:57560063-57560082 | None:intergenic | 30.0% | |
| TCAACCATATCAATCATTGT+TGG | - | chr1.3:57559022-57559041 | None:intergenic | 30.0% | |
| TCTCAATAACAAGTCAAAGA+CGG | + | chr1.3:57558341-57558360 | MS.gene44024:intron | 30.0% | |
| TCTCCCTAAATTCTTTACTT+TGG | + | chr1.3:57559103-57559122 | MS.gene44024:intron | 30.0% | |
| TGATTGATATGGTTGAATGA+GGG | + | chr1.3:57559026-57559045 | MS.gene44024:intron | 30.0% | |
| TGTAATTCGACATTTCTTTG+AGG | + | chr1.3:57558783-57558802 | MS.gene44024:intron | 30.0% | |
| TTGTTAAATGAAAGAGGTCT+TGG | + | chr1.3:57558963-57558982 | MS.gene44024:intron | 30.0% | |
| ! | AGTCAGGACTAATTTGAAAT+TGG | + | chr1.3:57558103-57558122 | MS.gene44024:intron | 30.0% |
| ! | ATCTTAATATCATGCCACTT+TGG | + | chr1.3:57558993-57559012 | MS.gene44024:intron | 30.0% |
| ! | TGCTGAATGTTCATTTTGTT+TGG | + | chr1.3:57559843-57559862 | MS.gene44024:intron | 30.0% |
| !! | AGAAGTATTTGAGAAGACAA+AGG | + | chr1.3:57560271-57560290 | MS.gene44024:CDS | 30.0% |
| !! | CAGCTTTTGTTATGAACTTT+TGG | - | chr1.3:57557806-57557825 | None:intergenic | 30.0% |
| !!! | TCTGTTTTTTTGTGTTTTGC+TGG | + | chr1.3:57559393-57559412 | MS.gene44024:intron | 30.0% |
| ACTAATTGGAATTTACCTGC+AGG | + | chr1.3:57559919-57559938 | MS.gene44024:intron | 35.0% | |
| AGTTGTAAGCTGTCATAACA+TGG | + | chr1.3:57557907-57557926 | MS.gene44024:intron | 35.0% | |
| ATATCTGGATCGGTATAATC+TGG | + | chr1.3:57559153-57559172 | MS.gene44024:intron | 35.0% | |
| ATCAAGCAGAGAATGGTTTA+TGG | + | chr1.3:57560134-57560153 | MS.gene44024:intron | 35.0% | |
| ATCATTGTTGGAAACCAAAG+TGG | - | chr1.3:57559010-57559029 | None:intergenic | 35.0% | |
| ATTTGAGAAGACAAAGGACA+AGG | + | chr1.3:57560277-57560296 | MS.gene44024:CDS | 35.0% | |
| CAAAAAACAGACTACAGAAG+TGG | - | chr1.3:57559469-57559488 | None:intergenic | 35.0% | |
| CAAAATTGTGGAACACACTA+AGG | - | chr1.3:57557668-57557687 | None:intergenic | 35.0% | |
| CAGATGGTATATGATTCTTC+AGG | - | chr1.3:57559733-57559752 | None:intergenic | 35.0% | |
| CTAAGTGATTAAAAGAGACG+AGG | + | chr1.3:57558830-57558849 | MS.gene44024:intron | 35.0% | |
| CTCAATAACAAGTCAAAGAC+GGG | + | chr1.3:57558342-57558361 | MS.gene44024:intron | 35.0% | |
| GAACAATGATTGCACCAAAT+GGG | - | chr1.3:57557871-57557890 | None:intergenic | 35.0% | |
| GTTTGTACTTTGAATGGTGT+TGG | + | chr1.3:57559307-57559326 | MS.gene44024:intron | 35.0% | |
| TAAACAGCTAGATTGATCTC+TGG | - | chr1.3:57558152-57558171 | None:intergenic | 35.0% | |
| TATTCAAACGATGAACACGT+TGG | + | chr1.3:57558275-57558294 | MS.gene44024:intron | 35.0% | |
| TATTCACATCAAGCAGAGAA+TGG | + | chr1.3:57560127-57560146 | MS.gene44024:intron | 35.0% | |
| TCATATACCATCTGCTGTAT+CGG | + | chr1.3:57559739-57559758 | MS.gene44024:intron | 35.0% | |
| TGAGATCATTGCTATAAGAG+AGG | + | chr1.3:57558716-57558735 | MS.gene44024:CDS | 35.0% | |
| TTAGTATTACCATTAGCAGC+AGG | - | chr1.3:57558440-57558459 | None:intergenic | 35.0% | |
| ! | ATCTCAGTATCAGAGAGTTT+TGG | + | chr1.3:57559772-57559791 | MS.gene44024:intron | 35.0% |
| ! | ATGTTAGTGTTTTCTCTGTG+AGG | - | chr1.3:57558879-57558898 | None:intergenic | 35.0% |
| ! | TTTCCATGTTTGGAGTTTGT+AGG | + | chr1.3:57559562-57559581 | MS.gene44024:intron | 35.0% |
| ! | TTTTGTTCCTTTGCGTTCTT+TGG | + | chr1.3:57559625-57559644 | MS.gene44024:intron | 35.0% |
| !! | AGGTGTTGAATGTGGTTATA+TGG | + | chr1.3:57557842-57557861 | MS.gene44024:intron | 35.0% |
| !! | CTGTTTTGTTGGGTTTTCTT+TGG | + | chr1.3:57559416-57559435 | MS.gene44024:intron | 35.0% |
| !!! | CACTTCTGTAGTCTGTTTTT+TGG | + | chr1.3:57559467-57559486 | MS.gene44024:intron | 35.0% |
| !!! | CAGCTTTTGTTTTCCATGTT+TGG | + | chr1.3:57559552-57559571 | MS.gene44024:intron | 35.0% |
| !!! | GACGTGTTCTGTTTTTTGTT+CGG | + | chr1.3:57559584-57559603 | MS.gene44024:intron | 35.0% |
| CGAACAATGATTGCACCAAA+TGG | - | chr1.3:57557872-57557891 | None:intergenic | 40.0% | |
| CTATAACAACTAGCAAAGCC+TGG | - | chr1.3:57559529-57559548 | None:intergenic | 40.0% | |
| GAACAATCAGTGCACCATAT+GGG | - | chr1.3:57558629-57558648 | None:intergenic | 40.0% | |
| GAAGACAAAGGACAAGGTAA+AGG | + | chr1.3:57560283-57560302 | MS.gene44024:CDS | 40.0% | |
| GATATGGTTGAATGAGGGAT+TGG | + | chr1.3:57559031-57559050 | MS.gene44024:intron | 40.0% | |
| GCATATGAAGCTGTTGAATC+TGG | + | chr1.3:57558594-57558613 | MS.gene44024:CDS | 40.0% | |
| TACGGAAAAACATGAGTCAG+AGG | - | chr1.3:57558222-57558241 | None:intergenic | 40.0% | |
| TGAATAGCACCAAAGCACAT+TGG | - | chr1.3:57560010-57560029 | None:intergenic | 40.0% | |
| ! | TCGACATTTCTTTGAGGGTT+GGG | + | chr1.3:57558789-57558808 | MS.gene44024:intron | 40.0% |
| ! | TCTATGAGGTGTTAACTCAG+TGG | + | chr1.3:57559241-57559260 | MS.gene44024:intron | 40.0% |
| ! | TGAAATTGGCTTAGAGAGAC+CGG | + | chr1.3:57558117-57558136 | MS.gene44024:intron | 40.0% |
| ! | TGATCTCTGGTTTCTGTAAC+CGG | - | chr1.3:57558139-57558158 | None:intergenic | 40.0% |
| ! | TTCGACATTTCTTTGAGGGT+TGG | + | chr1.3:57558788-57558807 | MS.gene44024:intron | 40.0% |
| !! | GCATACAAAGGTGTTGAATG+TGG | + | chr1.3:57557834-57557853 | MS.gene44024:intron | 40.0% |
| !! | GTTTTGCTGGCTGTTTTGTT+GGG | + | chr1.3:57559406-57559425 | MS.gene44024:intron | 40.0% |
| !! | TGTTTTGCTGGCTGTTTTGT+TGG | + | chr1.3:57559405-57559424 | MS.gene44024:intron | 40.0% |
| AGAATGGTTTATGGAGCCAC+AGG | + | chr1.3:57560143-57560162 | MS.gene44024:CDS | 45.0% | |
| AGCAGCATCATGTTCCATGA+TGG | - | chr1.3:57558411-57558430 | None:intergenic | 45.0% | |
| ATGATCTCAGCATGAGCAGT+TGG | - | chr1.3:57558705-57558724 | None:intergenic | 45.0% | |
| ATGTTTCCGGAGATAGCTGT+TGG | + | chr1.3:57559341-57559360 | MS.gene44024:intron | 45.0% | |
| CGAACAATCAGTGCACCATA+TGG | - | chr1.3:57558630-57558649 | None:intergenic | 45.0% | |
| CGTCCTACAAACTCCAAACA+TGG | - | chr1.3:57559568-57559587 | None:intergenic | 45.0% | |
| GAACCTTGTCCAATGTGCTT+TGG | + | chr1.3:57559998-57560017 | MS.gene44024:CDS | 45.0% | |
| GAAGCTGTTGAATCTGGTGA+TGG | + | chr1.3:57558600-57558619 | MS.gene44024:CDS | 45.0% | |
| GACGAGGAGTTAAAAGAACG+TGG | + | chr1.3:57558846-57558865 | MS.gene44024:intron | 45.0% | |
| GGAGAAGCTGCAAGATCAAT+TGG | + | chr1.3:57560164-57560183 | MS.gene44024:CDS | 45.0% | |
| GTACATTTCACAGCCAGCAA+GGG | - | chr1.3:57559969-57559988 | None:intergenic | 45.0% | |
| TAGTCTAGCCTGCTGTGTTA+GGG | + | chr1.3:57559492-57559511 | MS.gene44024:intron | 45.0% | |
| TATCTCCGGAAACATTCCCT+CGG | - | chr1.3:57559336-57559355 | None:intergenic | 45.0% | |
| TATCTGTCCGATACAGCAGA+TGG | - | chr1.3:57559749-57559768 | None:intergenic | 45.0% | |
| TCTGCTGTATCGGACAGATA+TGG | + | chr1.3:57559749-57559768 | MS.gene44024:intron | 45.0% | |
| TGGTTATATGGACGCCCATT+TGG | + | chr1.3:57557854-57557873 | MS.gene44024:intron | 45.0% | |
| TGTACATTTCACAGCCAGCA+AGG | - | chr1.3:57559970-57559989 | None:intergenic | 45.0% | |
| TGTTTCCGGAGATAGCTGTT+GGG | + | chr1.3:57559342-57559361 | MS.gene44024:intron | 45.0% | |
| ! | AGTCAAAGACGGGTTTAGTG+TGG | + | chr1.3:57558352-57558371 | MS.gene44024:intron | 45.0% |
| ! | GCTGTCGAAGAAGCATACAA+AGG | + | chr1.3:57557822-57557841 | MS.gene44024:intron | 45.0% |
| !! | ATTAGGCAGAACTCGGTGTA+AGG | - | chr1.3:57559655-57559674 | None:intergenic | 45.0% |
| !! | TCTGGTGATGGATACCCATA+TGG | + | chr1.3:57558612-57558631 | MS.gene44024:CDS | 45.0% |
| !!! | GTTGGGTTTTCTTTGGAGCA+TGG | + | chr1.3:57559423-57559442 | MS.gene44024:intron | 45.0% |
| AGGCACACCAAAGAACGCAA+AGG | - | chr1.3:57559635-57559654 | None:intergenic | 50.0% | |
| ATCTCCGGAAACATTCCCTC+GGG | - | chr1.3:57559335-57559354 | None:intergenic | 50.0% | |
| CCTGCAGGCTTGTAAAAAGC+TGG | + | chr1.3:57559934-57559953 | MS.gene44024:intron | 50.0% | |
| CTGGATAACGTTTCCCTTGC+TGG | + | chr1.3:57559953-57559972 | MS.gene44024:CDS | 50.0% | |
| GCACCAAAGCACATTGGACA+AGG | - | chr1.3:57560004-57560023 | None:intergenic | 50.0% | |
| GTAGTCTAGCCTGCTGTGTT+AGG | + | chr1.3:57559491-57559510 | MS.gene44024:intron | 50.0% | |
| GTTTCCGGAGATAGCTGTTG+GGG | + | chr1.3:57559343-57559362 | MS.gene44024:intron | 50.0% | |
| TGATCTTGCAGCTTCTCCTG+TGG | - | chr1.3:57560162-57560181 | None:intergenic | 50.0% | |
| TGTCTCTATCCTCTGCAGCT+GGG | - | chr1.3:57558545-57558564 | None:intergenic | 50.0% | |
| ! | CCAGCTTTTTACAAGCCTGC+AGG | - | chr1.3:57559937-57559956 | None:intergenic | 50.0% |
| ! | TGAATGGTGTTGGAACCCGA+GGG | + | chr1.3:57559317-57559336 | MS.gene44024:intron | 50.0% |
| ! | TTGAATGGTGTTGGAACCCG+AGG | + | chr1.3:57559316-57559335 | MS.gene44024:intron | 50.0% |
| ACCACATGCCCTAACACAGC+AGG | - | chr1.3:57559503-57559522 | None:intergenic | 55.0% | |
| CTGTCTCTATCCTCTGCAGC+TGG | - | chr1.3:57558546-57558565 | None:intergenic | 55.0% | |
| GCTGCTACTCCTGCTGCTAA+TGG | + | chr1.3:57558428-57558447 | MS.gene44024:intron | 55.0% | |
| GGAACCCGAGGGAATGTTTC+CGG | + | chr1.3:57559328-57559347 | MS.gene44024:intron | 55.0% | |
| GTTAGGGCATGTGGTATGCC+AGG | + | chr1.3:57559508-57559527 | MS.gene44024:intron | 55.0% | |
| TCTCGTTATCCCAGCTGCAG+AGG | + | chr1.3:57558533-57558552 | MS.gene44024:intron | 55.0% | |
| ! | GCTGCTGCTTCTGCTGCAAA+CGG | + | chr1.3:57557578-57557597 | MS.gene44024:CDS | 55.0% |
| GCCTGCTGTGTTAGGGCATG+TGG | + | chr1.3:57559499-57559518 | MS.gene44024:intron | 60.0% | |
| CGCGCCCCAACAGCTATCTC+CGG | - | chr1.3:57559350-57559369 | None:intergenic | 65.0% | |
| CGGAGATAGCTGTTGGGGCG+CGG | + | chr1.3:57559348-57559367 | MS.gene44024:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57557569 | 57560328 | 57557569 | ID=MS.gene44024 |
| chr1.3 | mRNA | 57557569 | 57560328 | 57557569 | ID=MS.gene44024.t1;Parent=MS.gene44024 |
| chr1.3 | exon | 57557569 | 57557599 | 57557569 | ID=MS.gene44024.t1.exon1;Parent=MS.gene44024.t1 |
| chr1.3 | CDS | 57557569 | 57557599 | 57557569 | ID=cds.MS.gene44024.t1;Parent=MS.gene44024.t1 |
| chr1.3 | exon | 57558547 | 57558737 | 57558547 | ID=MS.gene44024.t1.exon2;Parent=MS.gene44024.t1 |
| chr1.3 | CDS | 57558547 | 57558737 | 57558547 | ID=cds.MS.gene44024.t1;Parent=MS.gene44024.t1 |
| chr1.3 | exon | 57559941 | 57560045 | 57559941 | ID=MS.gene44024.t1.exon3;Parent=MS.gene44024.t1 |
| chr1.3 | CDS | 57559941 | 57560045 | 57559941 | ID=cds.MS.gene44024.t1;Parent=MS.gene44024.t1 |
| chr1.3 | exon | 57560143 | 57560328 | 57560143 | ID=MS.gene44024.t1.exon4;Parent=MS.gene44024.t1 |
| chr1.3 | CDS | 57560143 | 57560328 | 57560143 | ID=cds.MS.gene44024.t1;Parent=MS.gene44024.t1 |
| Gene Sequence |
| Protein sequence |
