Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44073.t1 | XP_003591068.2 | 94.7 | 339 | 14 | 3 | 1 | 337 | 1 | 337 | 2.10E-171 | 611.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44073.t1 | Q9SK91 | 45.0 | 329 | 146 | 8 | 14 | 333 | 1 | 303 | 3.8e-57 | 223.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44073.t1 | G7I7I3 | 94.7 | 339 | 14 | 3 | 1 | 337 | 1 | 337 | 1.5e-171 | 611.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene44073.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050170 | MS.gene44073 | -0.809991 | 1.44E-50 | -1.69E-46 |
MS.gene050328 | MS.gene44073 | 0.813365 | 2.66E-51 | -1.69E-46 |
MS.gene050338 | MS.gene44073 | 0.849192 | 3.79E-60 | -1.69E-46 |
MS.gene050790 | MS.gene44073 | 0.818143 | 2.29E-52 | -1.69E-46 |
MS.gene050904 | MS.gene44073 | -0.817077 | 3.97E-52 | -1.69E-46 |
MS.gene051718 | MS.gene44073 | 0.805171 | 1.52E-49 | -1.69E-46 |
MS.gene052383 | MS.gene44073 | 0.835849 | 1.32E-56 | -1.69E-46 |
MS.gene054614 | MS.gene44073 | 0.818942 | 1.51E-52 | -1.69E-46 |
MS.gene054999 | MS.gene44073 | 0.827002 | 1.99E-54 | -1.69E-46 |
MS.gene055251 | MS.gene44073 | 0.858856 | 6.18E-63 | -1.69E-46 |
MS.gene05589 | MS.gene44073 | -0.802708 | 4.93E-49 | -1.69E-46 |
MS.gene056266 | MS.gene44073 | -0.811739 | 6.02E-51 | -1.69E-46 |
MS.gene056354 | MS.gene44073 | 0.806806 | 6.88E-50 | -1.69E-46 |
MS.gene056583 | MS.gene44073 | 0.805466 | 1.32E-49 | -1.69E-46 |
MS.gene056618 | MS.gene44073 | 0.817936 | 2.55E-52 | -1.69E-46 |
MS.gene058334 | MS.gene44073 | 0.826787 | 2.24E-54 | -1.69E-46 |
MS.gene058382 | MS.gene44073 | 0.842749 | 2.14E-58 | -1.69E-46 |
MS.gene058386 | MS.gene44073 | 0.801939 | 7.11E-49 | -1.69E-46 |
MS.gene06042 | MS.gene44073 | 0.821586 | 3.73E-53 | -1.69E-46 |
MS.gene061044 | MS.gene44073 | 0.823028 | 1.73E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44073.t1 | MTR_1g082480 | 94.690 | 339 | 14 | 3 | 1 | 337 | 1 | 337 | 0.0 | 629 |
MS.gene44073.t1 | MTR_1g082480 | 94.822 | 309 | 12 | 3 | 1 | 307 | 1 | 307 | 0.0 | 568 |
MS.gene44073.t1 | MTR_7g113830 | 56.571 | 350 | 102 | 10 | 1 | 337 | 1 | 313 | 1.40e-124 | 360 |
MS.gene44073.t1 | MTR_3g099620 | 50.606 | 330 | 138 | 7 | 14 | 333 | 1 | 315 | 8.74e-102 | 302 |
MS.gene44073.t1 | MTR_5g064950 | 43.077 | 325 | 152 | 8 | 14 | 334 | 1 | 296 | 7.66e-79 | 243 |
MS.gene44073.t1 | MTR_8g066770 | 52.778 | 216 | 87 | 2 | 126 | 336 | 104 | 309 | 2.76e-73 | 229 |
MS.gene44073.t1 | MTR_5g064950 | 42.617 | 298 | 138 | 8 | 14 | 307 | 1 | 269 | 6.01e-69 | 218 |
MS.gene44073.t1 | MTR_0194s0050 | 47.005 | 217 | 110 | 2 | 118 | 330 | 166 | 381 | 8.11e-57 | 189 |
MS.gene44073.t1 | MTR_8g024210 | 49.758 | 207 | 86 | 3 | 126 | 330 | 171 | 361 | 1.59e-56 | 187 |
MS.gene44073.t1 | MTR_1g028470 | 33.220 | 295 | 140 | 9 | 54 | 325 | 30 | 290 | 1.15e-35 | 131 |
MS.gene44073.t1 | MTR_2g022280 | 39.583 | 192 | 105 | 4 | 136 | 325 | 1 | 183 | 2.14e-34 | 125 |
MS.gene44073.t1 | MTR_3g090850 | 34.524 | 252 | 121 | 7 | 117 | 325 | 76 | 326 | 5.83e-34 | 127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44073.t1 | AT1G72210 | 45.954 | 346 | 133 | 10 | 14 | 334 | 1 | 317 | 6.21e-81 | 249 |
MS.gene44073.t1 | AT1G22490 | 44.023 | 343 | 131 | 11 | 14 | 334 | 1 | 304 | 1.18e-78 | 243 |
MS.gene44073.t1 | AT1G72210 | 46.395 | 319 | 117 | 11 | 14 | 307 | 1 | 290 | 2.72e-71 | 224 |
MS.gene44073.t1 | AT1G22490 | 43.671 | 316 | 117 | 11 | 14 | 307 | 1 | 277 | 5.70e-67 | 213 |
MS.gene44073.t1 | AT3G24140 | 43.304 | 224 | 118 | 3 | 115 | 331 | 176 | 397 | 3.10e-54 | 183 |
MS.gene44073.t1 | AT3G24140 | 43.304 | 224 | 118 | 3 | 115 | 331 | 176 | 397 | 3.61e-54 | 183 |
MS.gene44073.t1 | AT4G01460 | 44.076 | 211 | 110 | 3 | 126 | 335 | 105 | 308 | 1.07e-52 | 176 |
MS.gene44073.t1 | AT4G01460 | 44.076 | 211 | 110 | 3 | 126 | 335 | 105 | 308 | 1.07e-52 | 176 |
MS.gene44073.t1 | AT5G65320 | 45.024 | 211 | 110 | 3 | 124 | 333 | 90 | 295 | 3.20e-51 | 172 |
MS.gene44073.t1 | AT5G46690 | 45.532 | 235 | 91 | 6 | 126 | 333 | 78 | 302 | 2.50e-50 | 171 |
MS.gene44073.t1 | AT2G46810 | 45.771 | 201 | 92 | 4 | 127 | 326 | 112 | 296 | 5.44e-48 | 164 |
MS.gene44073.t1 | AT2G46810 | 45.320 | 203 | 94 | 4 | 127 | 328 | 172 | 358 | 2.13e-47 | 164 |
MS.gene44073.t1 | AT2G46810 | 45.320 | 203 | 94 | 4 | 127 | 328 | 184 | 370 | 2.75e-47 | 164 |
MS.gene44073.t1 | AT3G61950 | 46.040 | 202 | 91 | 4 | 126 | 326 | 117 | 301 | 1.01e-46 | 160 |
MS.gene44073.t1 | AT3G61950 | 45.098 | 204 | 94 | 4 | 126 | 328 | 168 | 354 | 5.32e-46 | 160 |
MS.gene44073.t1 | AT5G65320 | 46.196 | 184 | 94 | 2 | 124 | 307 | 90 | 268 | 3.75e-44 | 153 |
MS.gene44073.t1 | AT2G46810 | 40.260 | 231 | 93 | 5 | 127 | 328 | 112 | 326 | 2.61e-42 | 149 |
MS.gene44073.t1 | AT3G61950 | 47.337 | 169 | 72 | 3 | 126 | 294 | 117 | 268 | 1.73e-40 | 144 |
MS.gene44073.t1 | AT3G61950 | 46.746 | 169 | 73 | 3 | 126 | 294 | 168 | 319 | 8.74e-40 | 143 |
MS.gene44073.t1 | AT5G46690 | 44.498 | 209 | 79 | 5 | 126 | 307 | 78 | 276 | 4.36e-39 | 140 |
MS.gene44073.t1 | AT3G06120 | 35.897 | 195 | 92 | 3 | 136 | 313 | 1 | 179 | 1.04e-31 | 118 |
MS.gene44073.t1 | AT5G53210 | 56.923 | 65 | 28 | 0 | 134 | 198 | 100 | 164 | 6.31e-20 | 89.7 |
MS.gene44073.t1 | AT5G53210 | 56.923 | 65 | 28 | 0 | 134 | 198 | 100 | 164 | 7.06e-20 | 89.7 |
MS.gene44073.t1 | AT3G61950 | 71.429 | 42 | 12 | 0 | 126 | 167 | 168 | 209 | 4.57e-13 | 67.8 |
MS.gene44073.t1 | AT3G61950 | 71.429 | 42 | 12 | 0 | 126 | 167 | 168 | 209 | 4.57e-13 | 67.8 |
MS.gene44073.t1 | AT1G32640 | 26.500 | 200 | 109 | 7 | 116 | 307 | 435 | 604 | 6.55e-11 | 63.9 |
Find 44 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTGATTCCATAACTAAA+AGG | 0.292800 | 1.3:+58063999 | None:intergenic |
GGTGATCAAGCTTCTATAAT+TGG | 0.293785 | 1.3:-58063291 | MS.gene44073:CDS |
ACTCTATCTCTTTCCTCTTC+AGG | 0.299868 | 1.3:+58064068 | None:intergenic |
CAGCTCTTGAAAATGGTATC+TGG | 0.309667 | 1.3:-58062979 | MS.gene44073:CDS |
AATGAAAAGAATTCAGAAAA+TGG | 0.318161 | 1.3:+58063162 | None:intergenic |
GCCAAAACAGCTCTTGAAAA+TGG | 0.324313 | 1.3:-58062986 | MS.gene44073:CDS |
TCTAATTCTGCAGCTACTAT+TGG | 0.326308 | 1.3:-58063102 | MS.gene44073:CDS |
GTTGAAGATGATTGCAAGTT+GGG | 0.350399 | 1.3:-58062762 | MS.gene44073:CDS |
CATTTAAATGTTACTACTAC+TGG | 0.355694 | 1.3:-58062928 | MS.gene44073:CDS |
ATTGTCCTCCTTATGTAGAT+TGG | 0.357399 | 1.3:-58063887 | MS.gene44073:CDS |
TTTCTTGAACTTCATTCAAA+TGG | 0.360903 | 1.3:+58063835 | None:intergenic |
CTAAAAGGATCTTGTGTTTG+TGG | 0.365756 | 1.3:+58064014 | None:intergenic |
TTCTTGAACTTCATTCAAAT+GGG | 0.379399 | 1.3:+58063836 | None:intergenic |
TCTTTACTCTCTCAGTGTTA+AGG | 0.389543 | 1.3:-58062896 | MS.gene44073:intron |
GTTGAATCCTATTGACCATC+TGG | 0.393376 | 1.3:+58062709 | None:intergenic |
CTGTATACCAGATGGTCAAT+AGG | 0.406963 | 1.3:-58062716 | MS.gene44073:CDS |
ACCCTTTGGATGTAAGAATC+TGG | 0.440881 | 1.3:+58063597 | None:intergenic |
GGTTGAAGATGATTGCAAGT+TGG | 0.450829 | 1.3:-58062763 | MS.gene44073:CDS |
TTGTTATTCCAATCTACATA+AGG | 0.465642 | 1.3:+58063879 | None:intergenic |
TTAAAATAAGATCAAGAAAG+AGG | 0.490885 | 1.3:-58063008 | MS.gene44073:CDS |
TGCCAGATTCTTACATCCAA+AGG | 0.505226 | 1.3:-58063599 | MS.gene44073:CDS |
GCCAGATTCTTACATCCAAA+GGG | 0.516817 | 1.3:-58063598 | MS.gene44073:intron |
TTAGTAATAGTATTACTACT+TGG | 0.517777 | 1.3:+58063801 | None:intergenic |
TGTTATGTGTTTACCTGAAG+AGG | 0.521964 | 1.3:-58064081 | None:intergenic |
ACACAGTTATTCGTCCGAAA+AGG | 0.534814 | 1.3:-58063743 | MS.gene44073:CDS |
GATCAAGCTTCTATAATTGG+AGG | 0.557225 | 1.3:-58063288 | MS.gene44073:CDS |
TGAACTTCATTCAAATGGGG+TGG | 0.566537 | 1.3:+58063840 | None:intergenic |
ATTACTACTTGGATCAGTAG+TGG | 0.576946 | 1.3:+58063812 | None:intergenic |
TGATTGCAAGTTGGGATCAG+TGG | 0.579380 | 1.3:-58062754 | MS.gene44073:CDS |
TTTCCACAGTATTCAACAAG+TGG | 0.589381 | 1.3:-58063141 | MS.gene44073:CDS |
GGTCAATAGGATTCAACAAG+AGG | 0.595940 | 1.3:-58062703 | MS.gene44073:CDS |
AGCTTCAGCTGTATACCAGA+TGG | 0.597796 | 1.3:-58062724 | MS.gene44073:CDS |
TATGTAGATTGGAATAACAA+TGG | 0.602597 | 1.3:-58063876 | MS.gene44073:CDS |
TTATTCCAATCTACATAAGG+AGG | 0.614549 | 1.3:+58063882 | None:intergenic |
TCTTGAACTTCATTCAAATG+GGG | 0.614700 | 1.3:+58063837 | None:intergenic |
ACGAATAACTGTGTTCACAG+AGG | 0.614740 | 1.3:+58063752 | None:intergenic |
CGAATAACTGTGTTCACAGA+GGG | 0.620805 | 1.3:+58063753 | None:intergenic |
CTACCACTTGTTGAATACTG+TGG | 0.624417 | 1.3:+58063138 | None:intergenic |
AGACATGGCACTAGAAGCAG+TGG | 0.632855 | 1.3:-58064042 | MS.gene44073:CDS |
AAGAGATAGAGTGAAAGACA+TGG | 0.656321 | 1.3:-58064057 | MS.gene44073:CDS |
GTGAAATCTGATGAAGCTGG+TGG | 0.684533 | 1.3:-58063198 | MS.gene44073:CDS |
TGCTGACATAGAAGTGACAA+TGG | 0.687267 | 1.3:-58063049 | MS.gene44073:CDS |
GAAGTGAAATCTGATGAAGC+TGG | 0.693568 | 1.3:-58063201 | MS.gene44073:CDS |
TGACATAGAAGTGACAATGG+TGG | 0.780182 | 1.3:-58063046 | MS.gene44073:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGAAAAGAATTCAGAAAA+TGG | + | chr1.3:58063607-58063626 | None:intergenic | 20.0% |
!! | TTAAAATAAGATCAAGAAAG+AGG | - | chr1.3:58063758-58063777 | MS.gene44073:CDS | 20.0% |
!! | TTAGTAATAGTATTACTACT+TGG | + | chr1.3:58062968-58062987 | None:intergenic | 20.0% |
!!! | AGATTTCTTTGAACAATTTT+TGG | - | chr1.3:58063933-58063952 | MS.gene44073:CDS | 20.0% |
!!! | ATCTTATTTTAAGATTTGCA+TGG | + | chr1.3:58063750-58063769 | None:intergenic | 20.0% |
! | CATTTAAATGTTACTACTAC+TGG | - | chr1.3:58063838-58063857 | MS.gene44073:CDS | 25.0% |
! | TATGTAGATTGGAATAACAA+TGG | - | chr1.3:58062890-58062909 | MS.gene44073:intron | 25.0% |
! | TCTTTGATTCCATAACTAAA+AGG | + | chr1.3:58062770-58062789 | None:intergenic | 25.0% |
! | TTCTTGAACTTCATTCAAAT+GGG | + | chr1.3:58062933-58062952 | None:intergenic | 25.0% |
! | TTTCTTGAACTTCATTCAAA+TGG | + | chr1.3:58062934-58062953 | None:intergenic | 25.0% |
!! | TTGTTATTCCAATCTACATA+AGG | + | chr1.3:58062890-58062909 | None:intergenic | 25.0% |
!!! | TGTGTTTGTTTTTTTGTTGT+TGG | - | chr1.3:58063443-58063462 | MS.gene44073:intron | 25.0% |
TCTTGAACTTCATTCAAATG+GGG | + | chr1.3:58062932-58062951 | None:intergenic | 30.0% | |
TTATTCCAATCTACATAAGG+AGG | + | chr1.3:58062887-58062906 | None:intergenic | 30.0% | |
! | GAGGACAATTATTTTCTGTT+TGG | + | chr1.3:58062868-58062887 | None:intergenic | 30.0% |
!! | ACACAAGATCCTTTTAGTTA+TGG | - | chr1.3:58062758-58062777 | MS.gene44073:CDS | 30.0% |
AACATGCAGTTACATGTTCT+TGG | - | chr1.3:58063342-58063361 | MS.gene44073:intron | 35.0% | |
AAGAGATAGAGTGAAAGACA+TGG | - | chr1.3:58062709-58062728 | MS.gene44073:CDS | 35.0% | |
ATTACTACTTGGATCAGTAG+TGG | + | chr1.3:58062957-58062976 | None:intergenic | 35.0% | |
ATTGTCCTCCTTATGTAGAT+TGG | - | chr1.3:58062879-58062898 | MS.gene44073:intron | 35.0% | |
CAGTGAGTTTAGTAGAATCA+CGG | - | chr1.3:58063237-58063256 | MS.gene44073:CDS | 35.0% | |
CTAAAAGGATCTTGTGTTTG+TGG | + | chr1.3:58062755-58062774 | None:intergenic | 35.0% | |
GATCAAGCTTCTATAATTGG+AGG | - | chr1.3:58063478-58063497 | MS.gene44073:intron | 35.0% | |
GCTACTATTGGTGAAAAAGT+TGG | - | chr1.3:58063676-58063695 | MS.gene44073:CDS | 35.0% | |
GGTGATCAAGCTTCTATAAT+TGG | - | chr1.3:58063475-58063494 | MS.gene44073:intron | 35.0% | |
GTTGAAGATGATTGCAAGTT+GGG | - | chr1.3:58064004-58064023 | MS.gene44073:CDS | 35.0% | |
TCTAATTCTGCAGCTACTAT+TGG | - | chr1.3:58063664-58063683 | MS.gene44073:CDS | 35.0% | |
TCTTTACTCTCTCAGTGTTA+AGG | - | chr1.3:58063870-58063889 | MS.gene44073:CDS | 35.0% | |
TGTAAGTAGTAAGTACCCTT+TGG | + | chr1.3:58063186-58063205 | None:intergenic | 35.0% | |
TTTCCACAGTATTCAACAAG+TGG | - | chr1.3:58063625-58063644 | MS.gene44073:CDS | 35.0% | |
! | AGCTCTGGTAATCTAAAGTT+CGG | + | chr1.3:58063378-58063397 | None:intergenic | 35.0% |
! | GAGCACAAGTTTCATTTTCT+TGG | - | chr1.3:58063526-58063545 | MS.gene44073:intron | 35.0% |
!! | ACCATTTTCAAGAGCTGTTT+TGG | + | chr1.3:58063784-58063803 | None:intergenic | 35.0% |
!!! | TTTTGTTGTTGGTGAATGCA+GGG | - | chr1.3:58063454-58063473 | MS.gene44073:intron | 35.0% |
!!! | TTTTTGTTGTTGGTGAATGC+AGG | - | chr1.3:58063453-58063472 | MS.gene44073:intron | 35.0% |
ACACAGTTATTCGTCCGAAA+AGG | - | chr1.3:58063023-58063042 | MS.gene44073:CDS | 40.0% | |
ACCCTTTGGATGTAAGAATC+TGG | + | chr1.3:58063172-58063191 | None:intergenic | 40.0% | |
ACGAATAACTGTGTTCACAG+AGG | + | chr1.3:58063017-58063036 | None:intergenic | 40.0% | |
ACTCTATCTCTTTCCTCTTC+AGG | + | chr1.3:58062701-58062720 | None:intergenic | 40.0% | |
CAGCTCTTGAAAATGGTATC+TGG | - | chr1.3:58063787-58063806 | MS.gene44073:CDS | 40.0% | |
CGAATAACTGTGTTCACAGA+GGG | + | chr1.3:58063016-58063035 | None:intergenic | 40.0% | |
CTGTATACCAGATGGTCAAT+AGG | - | chr1.3:58064050-58064069 | MS.gene44073:CDS | 40.0% | |
GAAGTGAAATCTGATGAAGC+TGG | - | chr1.3:58063565-58063584 | MS.gene44073:intron | 40.0% | |
GCCAAAACAGCTCTTGAAAA+TGG | - | chr1.3:58063780-58063799 | MS.gene44073:CDS | 40.0% | |
GCCAGATTCTTACATCCAAA+GGG | - | chr1.3:58063168-58063187 | MS.gene44073:CDS | 40.0% | |
GGTCAATAGGATTCAACAAG+AGG | - | chr1.3:58064063-58064082 | MS.gene44073:CDS | 40.0% | |
GGTTGAAGATGATTGCAAGT+TGG | - | chr1.3:58064003-58064022 | MS.gene44073:CDS | 40.0% | |
GTTGAATCCTATTGACCATC+TGG | + | chr1.3:58064060-58064079 | None:intergenic | 40.0% | |
TGAACTTCATTCAAATGGGG+TGG | + | chr1.3:58062929-58062948 | None:intergenic | 40.0% | |
TGACATAGAAGTGACAATGG+TGG | - | chr1.3:58063720-58063739 | MS.gene44073:CDS | 40.0% | |
TGCCAGATTCTTACATCCAA+AGG | - | chr1.3:58063167-58063186 | MS.gene44073:CDS | 40.0% | |
TGCTGACATAGAAGTGACAA+TGG | - | chr1.3:58063717-58063736 | MS.gene44073:CDS | 40.0% | |
! | CCCTCTAGTTTCTAGAAGAA+GGG | + | chr1.3:58063401-58063420 | None:intergenic | 40.0% |
! | CCCTTCTTCTAGAAACTAGA+GGG | - | chr1.3:58063398-58063417 | MS.gene44073:intron | 40.0% |
! | CTACCACTTGTTGAATACTG+TGG | + | chr1.3:58063631-58063650 | None:intergenic | 40.0% |
! | TCCCTTCTTCTAGAAACTAG+AGG | - | chr1.3:58063397-58063416 | MS.gene44073:intron | 40.0% |
AGCTTCAGCTGTATACCAGA+TGG | - | chr1.3:58064042-58064061 | MS.gene44073:CDS | 45.0% | |
CAAATGGGGTGGTGAAAAAG+TGG | + | chr1.3:58062918-58062937 | None:intergenic | 45.0% | |
GTGAAATCTGATGAAGCTGG+TGG | - | chr1.3:58063568-58063587 | MS.gene44073:intron | 45.0% | |
! | GCCCTCTAGTTTCTAGAAGA+AGG | + | chr1.3:58063402-58063421 | None:intergenic | 45.0% |
! | TGATTGCAAGTTGGGATCAG+TGG | - | chr1.3:58064012-58064031 | MS.gene44073:CDS | 45.0% |
! | TTTCTAGAAGAAGGGAGCTC+TGG | + | chr1.3:58063393-58063412 | None:intergenic | 45.0% |
!!! | TTGAATTTTTTTTTTTATTT+AGG | - | chr1.3:58063982-58064001 | MS.gene44073:CDS | 5.0% |
AGACATGGCACTAGAAGCAG+TGG | - | chr1.3:58062724-58062743 | MS.gene44073:CDS | 50.0% | |
!!! | CTTCTAGCTCTGCGCCTTTT+CGG | + | chr1.3:58063040-58063059 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 58062689 | 58064099 | 58062689 | ID=MS.gene44073 |
chr1.3 | mRNA | 58062689 | 58064099 | 58062689 | ID=MS.gene44073.t1;Parent=MS.gene44073 |
chr1.3 | exon | 58063599 | 58064099 | 58063599 | ID=MS.gene44073.t1.exon1;Parent=MS.gene44073.t1 |
chr1.3 | CDS | 58063599 | 58064099 | 58063599 | ID=cds.MS.gene44073.t1;Parent=MS.gene44073.t1 |
chr1.3 | exon | 58062897 | 58063313 | 58062897 | ID=MS.gene44073.t1.exon2;Parent=MS.gene44073.t1 |
chr1.3 | CDS | 58062897 | 58063313 | 58062897 | ID=cds.MS.gene44073.t1;Parent=MS.gene44073.t1 |
chr1.3 | exon | 58062689 | 58062784 | 58062689 | ID=MS.gene44073.t1.exon3;Parent=MS.gene44073.t1 |
chr1.3 | CDS | 58062689 | 58062784 | 58062689 | ID=cds.MS.gene44073.t1;Parent=MS.gene44073.t1 |
Gene Sequence |
Protein sequence |