Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44164.t1 | XP_003591188.1 | 99.5 | 187 | 1 | 0 | 1 | 187 | 1 | 187 | 1.60E-104 | 389 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44164.t1 | Q8LB54 | 84.5 | 187 | 29 | 0 | 1 | 187 | 1 | 187 | 3.7e-94 | 345.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44164.t1 | A2Q158 | 99.5 | 187 | 1 | 0 | 1 | 187 | 1 | 187 | 1.1e-104 | 389.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene44164 | 0.812693 | 3.73E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene44164 | 0.836243 | 1.05E-56 | -1.69E-46 |
| MS.gene050556 | MS.gene44164 | 0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene44164 | 0.829476 | 5.04E-55 | -1.69E-46 |
| MS.gene051102 | MS.gene44164 | 0.80714 | 5.85E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene44164 | 0.821749 | 3.42E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene44164 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene44164 | 0.802639 | 5.10E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene44164 | 0.830176 | 3.40E-55 | -1.69E-46 |
| MS.gene052335 | MS.gene44164 | 0.808587 | 2.88E-50 | -1.69E-46 |
| MS.gene052397 | MS.gene44164 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene44164 | 0.837956 | 3.83E-57 | -1.69E-46 |
| MS.gene052932 | MS.gene44164 | 0.807364 | 5.24E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene44164 | 0.806618 | 7.54E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene44164 | 0.831798 | 1.36E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene44164 | 0.837239 | 5.84E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene44164 | 0.842377 | 2.68E-58 | -1.69E-46 |
| MS.gene055314 | MS.gene44164 | 0.822922 | 1.83E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene44164 | 0.83643 | 9.40E-57 | -1.69E-46 |
| MS.gene056181 | MS.gene44164 | 0.823867 | 1.10E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene44164 | 0.813177 | 2.92E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene44164 | 0.81089 | 9.20E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene44164 | 0.824189 | 9.24E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene44164 | 0.81015 | 1.33E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene44164 | 0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene44164 | 0.849895 | 2.41E-60 | -1.69E-46 |
| MS.gene059965 | MS.gene44164 | 0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene44164 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene44164 | 0.83278 | 7.77E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene44164 | 0.806553 | 7.78E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44164.t1 | MTR_1g083720 | 99.130 | 230 | 2 | 0 | 1 | 230 | 1 | 230 | 2.54e-172 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44164.t1 | AT2G40650 | 84.783 | 184 | 28 | 0 | 1 | 184 | 1 | 184 | 6.79e-118 | 341 |
Find 57 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTATCTCTTTCCCTTGC+AGG | 0.202403 | 1.3:-59290270 | None:intergenic |
| GCATTCTATTTGCGTCTTAC+TGG | 0.216581 | 1.3:+59289173 | MS.gene44164:CDS |
| TTCGATGACGATTTCTTTCT+CGG | 0.306868 | 1.3:-59289014 | None:intergenic |
| TGCACTTTGTCTAGGTTCTA+AGG | 0.312757 | 1.3:-59290067 | None:intergenic |
| ACATGAAGGGAGTGGGTTTC+CGG | 0.331461 | 1.3:-59288961 | None:intergenic |
| TACTGATGTGTATCATTATC+TGG | 0.333973 | 1.3:+59289202 | MS.gene44164:CDS |
| CCTCGAATGCTCTTCGCTGC+TGG | 0.349121 | 1.3:-59288788 | None:intergenic |
| CCCTATCTCTTTCCCTTGCA+GGG | 0.370664 | 1.3:-59290269 | None:intergenic |
| AGATCTATCAGCACACATAT+TGG | 0.372870 | 1.3:+59288852 | MS.gene44164:CDS |
| TGAGGAGGAAGAGGAGAATG+AGG | 0.386800 | 1.3:+59290104 | MS.gene44164:CDS |
| GCCCTGCAAGGGAAAGAGAT+AGG | 0.391241 | 1.3:+59290268 | MS.gene44164:CDS |
| ATGCAGGTATGTGAGGATAC+TGG | 0.405268 | 1.3:+59289148 | MS.gene44164:intron |
| AGCCGTTGTATAATGATTAT+AGG | 0.416127 | 1.3:+59289225 | MS.gene44164:CDS |
| GCTCCATGGCTTTGTCGACT+AGG | 0.420325 | 1.3:-59288907 | None:intergenic |
| GACCACCTCGGCGGCACTTA+CGG | 0.427204 | 1.3:+59288932 | MS.gene44164:CDS |
| CTCAATAACTTACGTCCATC+AGG | 0.434219 | 1.3:-59289266 | None:intergenic |
| TCTTCAAGTGCACTTTGTCT+AGG | 0.438667 | 1.3:-59290075 | None:intergenic |
| GCGGCACTTACGGTGGCAAC+CGG | 0.442983 | 1.3:+59288942 | MS.gene44164:CDS |
| CTCCATGGCTTTGTCGACTA+GGG | 0.448233 | 1.3:-59288906 | None:intergenic |
| AGAAAGGAAAGCACCTTCTC+AGG | 0.452898 | 1.3:-59290150 | None:intergenic |
| ACCTTCTCAGGCTCCTCAGC+AGG | 0.454985 | 1.3:-59290138 | None:intergenic |
| AGGTGGACTCTTGAATCTCT+TGG | 0.461088 | 1.3:+59290042 | MS.gene44164:intron |
| AGAACAATGCTTCGGCTTAA+CGG | 0.471701 | 1.3:+59288877 | MS.gene44164:CDS |
| CCAGCAGCGAAGAGCATTCG+AGG | 0.474837 | 1.3:+59288788 | MS.gene44164:CDS |
| TCGATGACGATTTCTTTCTC+GGG | 0.499616 | 1.3:-59289013 | None:intergenic |
| GCCGAGGTGGTCGAGCTCCA+TGG | 0.522793 | 1.3:-59288921 | None:intergenic |
| TATTGGAAAGAACAATGCTT+CGG | 0.527020 | 1.3:+59288869 | MS.gene44164:CDS |
| CCATGCCGCGGATTAAGAAA+AGG | 0.529614 | 1.3:+59289448 | MS.gene44164:CDS |
| TGCAGGTATGTGAGGATACT+GGG | 0.544095 | 1.3:+59289149 | MS.gene44164:intron |
| CACCGTAAGTGCCGCCGAGG+TGG | 0.544664 | 1.3:-59288934 | None:intergenic |
| TAGACAAAGTGCACTTGAAG+AGG | 0.550517 | 1.3:+59290077 | MS.gene44164:CDS |
| CCCTGCAAGGGAAAGAGATA+GGG | 0.555278 | 1.3:+59290269 | MS.gene44164:CDS |
| GCCTGCTGAGGAGCCTGAGA+AGG | 0.563693 | 1.3:+59290137 | MS.gene44164:CDS |
| GACGAGGCACATGAAGGGAG+TGG | 0.564286 | 1.3:-59288969 | None:intergenic |
| AACCCTAGTCGACAAAGCCA+TGG | 0.577816 | 1.3:+59288904 | MS.gene44164:CDS |
| TGGATCAGTGCGATTTGCCA+TGG | 0.579045 | 1.3:-59288768 | None:intergenic |
| ATCGTGGGCGAAGCCCTGCA+AGG | 0.584499 | 1.3:+59290256 | MS.gene44164:CDS |
| TTTCATGACGAGGCACATGA+AGG | 0.588448 | 1.3:-59288975 | None:intergenic |
| GTTTATAGGATTATCATCGT+GGG | 0.596566 | 1.3:+59290241 | MS.gene44164:intron |
| ACGAGGCACATGAAGGGAGT+GGG | 0.599318 | 1.3:-59288968 | None:intergenic |
| CTGCGGCGGAAATTACCTGA+TGG | 0.600623 | 1.3:+59289251 | MS.gene44164:CDS |
| TCGTGGGCGAAGCCCTGCAA+GGG | 0.603091 | 1.3:+59290257 | MS.gene44164:CDS |
| TTCATGACGAGGCACATGAA+GGG | 0.606717 | 1.3:-59288974 | None:intergenic |
| TGCTTTGACACATGTTGATG+AGG | 0.607496 | 1.3:+59289383 | MS.gene44164:CDS |
| GGTTTATAGGATTATCATCG+TGG | 0.614925 | 1.3:+59290240 | MS.gene44164:intron |
| GAAGTAACAGCACATTTACA+AGG | 0.621566 | 1.3:-59290333 | None:intergenic |
| TTCCTATAATCATTATACAA+CGG | 0.623715 | 1.3:-59289227 | None:intergenic |
| TGCCACCGTAAGTGCCGCCG+AGG | 0.634024 | 1.3:-59288937 | None:intergenic |
| CACCTCGGCGGCACTTACGG+TGG | 0.637349 | 1.3:+59288935 | MS.gene44164:CDS |
| GGATAATGAACAGCCTGCTG+AGG | 0.651475 | 1.3:+59290125 | MS.gene44164:CDS |
| GACGTGATAGTCATAGACAC+AGG | 0.680693 | 1.3:+59290298 | MS.gene44164:CDS |
| GCCATGGAGCTCGACCACCT+CGG | 0.691184 | 1.3:+59288920 | MS.gene44164:CDS |
| GCTGTGATATTGCCATGCCG+CGG | 0.699595 | 1.3:+59289436 | MS.gene44164:CDS |
| ATGATTATAGGAAACTGCGG+CGG | 0.708986 | 1.3:+59289237 | MS.gene44164:CDS |
| ATAATGATTATAGGAAACTG+CGG | 0.718715 | 1.3:+59289234 | MS.gene44164:CDS |
| TGTGCTGATAGATCTTTGAA+CGG | 0.719231 | 1.3:-59288844 | None:intergenic |
| ATGGAGCTCGACCACCTCGG+CGG | 0.724394 | 1.3:+59288923 | MS.gene44164:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTTTGAAAAATGC+AGG | + | chr1.3:59289132-59289151 | MS.gene44164:intron | 15.0% |
| !! | TTCCTATAATCATTATACAA+CGG | - | chr1.3:59289230-59289249 | None:intergenic | 20.0% |
| !!! | TTTACAGTTTCATATTTTTG+TGG | + | chr1.3:59289983-59290002 | MS.gene44164:intron | 20.0% |
| ! | AAAAGTAGATTGCTTAAGAA+AGG | - | chr1.3:59290169-59290188 | None:intergenic | 25.0% |
| ! | AAAATCCGAAACTAAAAAGA+GGG | - | chr1.3:59289070-59289089 | None:intergenic | 25.0% |
| ! | AACTGTAAACTAATCATACA+AGG | - | chr1.3:59289972-59289991 | None:intergenic | 25.0% |
| ! | ACTGTAAACTAATCATACAA+GGG | - | chr1.3:59289971-59289990 | None:intergenic | 25.0% |
| ! | ATAATGATTATAGGAAACTG+CGG | + | chr1.3:59289234-59289253 | MS.gene44164:CDS | 25.0% |
| ! | TTGATTGTTGAATGGTTTAT+AGG | + | chr1.3:59290227-59290246 | MS.gene44164:intron | 25.0% |
| !! | TCTACTATCTTTTCTACTAT+AGG | - | chr1.3:59289574-59289593 | None:intergenic | 25.0% |
| !! | TTTCGCTAATAGTATTTTCT+AGG | - | chr1.3:59289703-59289722 | None:intergenic | 25.0% |
| !!! | ATTTTTTCAACAAGGTTTTG+AGG | - | chr1.3:59288821-59288840 | None:intergenic | 25.0% |
| !!! | GTTCTTTCTTTTTTCTCTAT+TGG | + | chr1.3:59289491-59289510 | MS.gene44164:intron | 25.0% |
| !!! | TTGTCTTTTGTTTTCTTTGT+AGG | + | chr1.3:59289877-59289896 | MS.gene44164:intron | 25.0% |
| !!! | TTTTGTCATTTGTTTTTTGC+AGG | + | chr1.3:59290022-59290041 | MS.gene44164:intron | 25.0% |
| !!! | TTTTTTCAACAAGGTTTTGA+GGG | - | chr1.3:59288820-59288839 | None:intergenic | 25.0% |
| AAATCCGAAACTAAAAAGAG+GGG | - | chr1.3:59289069-59289088 | None:intergenic | 30.0% | |
| AACAACATTAGATAGAGAGT+TGG | + | chr1.3:59289541-59289560 | MS.gene44164:intron | 30.0% | |
| ACAACATTAGATAGAGAGTT+GGG | + | chr1.3:59289542-59289561 | MS.gene44164:intron | 30.0% | |
| AGCCGTTGTATAATGATTAT+AGG | + | chr1.3:59289225-59289244 | MS.gene44164:CDS | 30.0% | |
| GAAAATCCGAAACTAAAAAG+AGG | - | chr1.3:59289071-59289090 | None:intergenic | 30.0% | |
| GTTTATAGGATTATCATCGT+GGG | + | chr1.3:59290241-59290260 | MS.gene44164:intron | 30.0% | |
| TACTGATGTGTATCATTATC+TGG | + | chr1.3:59289202-59289221 | MS.gene44164:CDS | 30.0% | |
| TATTGGAAAGAACAATGCTT+CGG | + | chr1.3:59288869-59288888 | MS.gene44164:CDS | 30.0% | |
| ! | TAATACCTTTTCTTAATCCG+CGG | - | chr1.3:59289456-59289475 | None:intergenic | 30.0% |
| ! | TAGTTTCGGATTTTCATTCT+GGG | + | chr1.3:59289076-59289095 | MS.gene44164:intron | 30.0% |
| ! | TGGTTTTTGATAGAAGACTA+TGG | + | chr1.3:59289764-59289783 | MS.gene44164:intron | 30.0% |
| ! | TTAGTTTCGGATTTTCATTC+TGG | + | chr1.3:59289075-59289094 | MS.gene44164:intron | 30.0% |
| !! | GTTTAGTTATTTTGCTTGCT+CGG | + | chr1.3:59289517-59289536 | MS.gene44164:intron | 30.0% |
| !! | TTTGTAGGATTTTGAGTAGT+AGG | + | chr1.3:59289892-59289911 | MS.gene44164:intron | 30.0% |
| !!! | AACGGAGAATTTTTTCAACA+AGG | - | chr1.3:59288829-59288848 | None:intergenic | 30.0% |
| !!! | AATTCCCCTCTTTTTAGTTT+CGG | + | chr1.3:59289062-59289081 | MS.gene44164:intron | 30.0% |
| AAACTAGACTTCAGTGGTTT+GGG | + | chr1.3:59289593-59289612 | MS.gene44164:intron | 35.0% | |
| AGATCTAGAGATCAATGAGT+TGG | + | chr1.3:59289732-59289751 | MS.gene44164:intron | 35.0% | |
| AGATCTATCAGCACACATAT+TGG | + | chr1.3:59288852-59288871 | MS.gene44164:CDS | 35.0% | |
| CAACATTAGATAGAGAGTTG+GGG | + | chr1.3:59289543-59289562 | MS.gene44164:intron | 35.0% | |
| GAAGTAACAGCACATTTACA+AGG | - | chr1.3:59290336-59290355 | None:intergenic | 35.0% | |
| GGTTTATAGGATTATCATCG+TGG | + | chr1.3:59290240-59290259 | MS.gene44164:intron | 35.0% | |
| GTAAACTAATCATACAAGGG+AGG | - | chr1.3:59289968-59289987 | None:intergenic | 35.0% | |
| TAGTAGAAACTAGACTTCAG+TGG | + | chr1.3:59289587-59289606 | MS.gene44164:intron | 35.0% | |
| TGAATGTGATTCTGATGTTC+TGG | + | chr1.3:59290203-59290222 | MS.gene44164:intron | 35.0% | |
| TTCGATGACGATTTCTTTCT+CGG | - | chr1.3:59289017-59289036 | None:intergenic | 35.0% | |
| TTGAAAAATGCAGGTATGTG+AGG | + | chr1.3:59289141-59289160 | MS.gene44164:intron | 35.0% | |
| ! | TGTGCTGATAGATCTTTGAA+CGG | - | chr1.3:59288847-59288866 | None:intergenic | 35.0% |
| !! | GTTCTGGTTTGATTGTTGAA+TGG | + | chr1.3:59290219-59290238 | MS.gene44164:intron | 35.0% |
| !!! | TGTCATTTGTTTTTTGCAGG+TGG | + | chr1.3:59290025-59290044 | MS.gene44164:intron | 35.0% |
| AAGGAGAGTAAATCAGATGG+AGG | + | chr1.3:59289648-59289667 | MS.gene44164:intron | 40.0% | |
| AGAACAATGCTTCGGCTTAA+CGG | + | chr1.3:59288877-59288896 | MS.gene44164:CDS | 40.0% | |
| AGGAGAGTAAATCAGATGGA+GGG | + | chr1.3:59289649-59289668 | MS.gene44164:intron | 40.0% | |
| ATGATTATAGGAAACTGCGG+CGG | + | chr1.3:59289237-59289256 | MS.gene44164:CDS | 40.0% | |
| CTCAATAACTTACGTCCATC+AGG | - | chr1.3:59289269-59289288 | None:intergenic | 40.0% | |
| GAAACTAGACTTCAGTGGTT+TGG | + | chr1.3:59289592-59289611 | MS.gene44164:intron | 40.0% | |
| GCATGTAGAGAGAAAACTTG+TGG | + | chr1.3:59289615-59289634 | MS.gene44164:intron | 40.0% | |
| GCATTCTATTTGCGTCTTAC+TGG | + | chr1.3:59289173-59289192 | MS.gene44164:CDS | 40.0% | |
| GGTAAGGAGAGTAAATCAGA+TGG | + | chr1.3:59289645-59289664 | MS.gene44164:intron | 40.0% | |
| TACTCTGTGCTTTGCATGAT+AGG | + | chr1.3:59289849-59289868 | MS.gene44164:intron | 40.0% | |
| TAGACAAAGTGCACTTGAAG+AGG | + | chr1.3:59290077-59290096 | MS.gene44164:CDS | 40.0% | |
| TCGATGACGATTTCTTTCTC+GGG | - | chr1.3:59289016-59289035 | None:intergenic | 40.0% | |
| TCTTCAAGTGCACTTTGTCT+AGG | - | chr1.3:59290078-59290097 | None:intergenic | 40.0% | |
| TGCACTTTGTCTAGGTTCTA+AGG | - | chr1.3:59290070-59290089 | None:intergenic | 40.0% | |
| TGCTTTGACACATGTTGATG+AGG | + | chr1.3:59289383-59289402 | MS.gene44164:CDS | 40.0% | |
| ! | CAATGAGTTGGAGAAACACA+TGG | + | chr1.3:59289744-59289763 | MS.gene44164:intron | 40.0% |
| ! | GGATAAGGCTTGGTTATTGT+CGG | + | chr1.3:59289822-59289841 | MS.gene44164:intron | 40.0% |
| ! | TGCACTTGAAGAGGATTTTG+AGG | + | chr1.3:59290086-59290105 | MS.gene44164:CDS | 40.0% |
| !! | ACTTGAAGAGGATTTTGAGG+AGG | + | chr1.3:59290089-59290108 | MS.gene44164:CDS | 40.0% |
| !! | AGGATTTTGAGTAGTAGGTG+AGG | + | chr1.3:59289897-59289916 | MS.gene44164:intron | 40.0% |
| !! | TCTGAAGCATTTTCATGACG+AGG | - | chr1.3:59288988-59289007 | None:intergenic | 40.0% |
| ATGCAGGTATGTGAGGATAC+TGG | + | chr1.3:59289148-59289167 | MS.gene44164:intron | 45.0% | |
| GACGTGATAGTCATAGACAC+AGG | + | chr1.3:59290298-59290317 | MS.gene44164:CDS | 45.0% | |
| GAGAAAACTTGTGGATGCTG+CGG | + | chr1.3:59289624-59289643 | MS.gene44164:intron | 45.0% | |
| GAGGATAGAGAGCAAGACAA+AGG | - | chr1.3:59289949-59289968 | None:intergenic | 45.0% | |
| GGAGAGTAAATCAGATGGAG+GGG | + | chr1.3:59289650-59289669 | MS.gene44164:intron | 45.0% | |
| GGTGTCAAATCACTAGAGGT+AGG | + | chr1.3:59289671-59289690 | MS.gene44164:intron | 45.0% | |
| TGCAGGTATGTGAGGATACT+GGG | + | chr1.3:59289149-59289168 | MS.gene44164:intron | 45.0% | |
| TTCATGACGAGGCACATGAA+GGG | - | chr1.3:59288977-59288996 | None:intergenic | 45.0% | |
| TTTCATGACGAGGCACATGA+AGG | - | chr1.3:59288978-59288997 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1.3:59289813-59289832 | None:intergenic | 45.0% |
| ! | AGGTGGACTCTTGAATCTCT+TGG | + | chr1.3:59290042-59290061 | MS.gene44164:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1.3:59289814-59289833 | None:intergenic | 45.0% |
| !! | AGAAAGGAAAGCACCTTCTC+AGG | - | chr1.3:59290153-59290172 | None:intergenic | 45.0% |
| !! | AGAGGATTTTGAGGAGGAAG+AGG | + | chr1.3:59290095-59290114 | MS.gene44164:CDS | 45.0% |
| AACCCTAGTCGACAAAGCCA+TGG | + | chr1.3:59288904-59288923 | MS.gene44164:CDS | 50.0% | |
| AACTTGTGGATGCTGCGGTA+AGG | + | chr1.3:59289629-59289648 | MS.gene44164:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1.3:59289812-59289831 | MS.gene44164:intron | 50.0% | |
| CCCTATCTCTTTCCCTTGCA+GGG | - | chr1.3:59290272-59290291 | None:intergenic | 50.0% | |
| CCCTGCAAGGGAAAGAGATA+GGG | + | chr1.3:59290269-59290288 | MS.gene44164:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1.3:59289809-59289828 | None:intergenic | 50.0% | |
| GGATAATGAACAGCCTGCTG+AGG | + | chr1.3:59290125-59290144 | MS.gene44164:CDS | 50.0% | |
| TCCCTATCTCTTTCCCTTGC+AGG | - | chr1.3:59290273-59290292 | None:intergenic | 50.0% | |
| TGAGGAGGAAGAGGAGAATG+AGG | + | chr1.3:59290104-59290123 | MS.gene44164:CDS | 50.0% | |
| ! | ACATGAAGGGAGTGGGTTTC+CGG | - | chr1.3:59288964-59288983 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1.3:59289815-59289834 | None:intergenic | 50.0% |
| ! | CCATGCCGCGGATTAAGAAA+AGG | + | chr1.3:59289448-59289467 | MS.gene44164:CDS | 50.0% |
| ! | CCTTTTCTTAATCCGCGGCA+TGG | - | chr1.3:59289451-59289470 | None:intergenic | 50.0% |
| !! | CTCCATGGCTTTGTCGACTA+GGG | - | chr1.3:59288909-59288928 | None:intergenic | 50.0% |
| !! | GAGGGGTGTCAAATCACTAG+AGG | + | chr1.3:59289667-59289686 | MS.gene44164:intron | 50.0% |
| ACGAGGCACATGAAGGGAGT+GGG | - | chr1.3:59288971-59288990 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1.3:59289800-59289819 | MS.gene44164:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1.3:59289807-59289826 | MS.gene44164:intron | 55.0% | |
| CTGCGGCGGAAATTACCTGA+TGG | + | chr1.3:59289251-59289270 | MS.gene44164:CDS | 55.0% | |
| GCCCTGCAAGGGAAAGAGAT+AGG | + | chr1.3:59290268-59290287 | MS.gene44164:CDS | 55.0% | |
| GCTGTGATATTGCCATGCCG+CGG | + | chr1.3:59289436-59289455 | MS.gene44164:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1.3:59289801-59289820 | MS.gene44164:intron | 55.0% | |
| !! | GCTCCATGGCTTTGTCGACT+AGG | - | chr1.3:59288910-59288929 | None:intergenic | 55.0% |
| ACCTTCTCAGGCTCCTCAGC+AGG | - | chr1.3:59290141-59290160 | None:intergenic | 60.0% | |
| CCTCGAATGCTCTTCGCTGC+TGG | - | chr1.3:59288791-59288810 | None:intergenic | 60.0% | |
| GACGAGGCACATGAAGGGAG+TGG | - | chr1.3:59288972-59288991 | None:intergenic | 60.0% | |
| !! | CCAGCAGCGAAGAGCATTCG+AGG | + | chr1.3:59288788-59288807 | MS.gene44164:CDS | 60.0% |
| ATCGTGGGCGAAGCCCTGCA+AGG | + | chr1.3:59290256-59290275 | MS.gene44164:CDS | 65.0% | |
| ATGGAGCTCGACCACCTCGG+CGG | + | chr1.3:59288923-59288942 | MS.gene44164:CDS | 65.0% | |
| GACCACCTCGGCGGCACTTA+CGG | + | chr1.3:59288932-59288951 | MS.gene44164:CDS | 65.0% | |
| GCCATGGAGCTCGACCACCT+CGG | + | chr1.3:59288920-59288939 | MS.gene44164:CDS | 65.0% | |
| GCCTGCTGAGGAGCCTGAGA+AGG | + | chr1.3:59290137-59290156 | MS.gene44164:CDS | 65.0% | |
| GCGGCACTTACGGTGGCAAC+CGG | + | chr1.3:59288942-59288961 | MS.gene44164:CDS | 65.0% | |
| TCGTGGGCGAAGCCCTGCAA+GGG | + | chr1.3:59290257-59290276 | MS.gene44164:CDS | 65.0% | |
| CACCTCGGCGGCACTTACGG+TGG | + | chr1.3:59288935-59288954 | MS.gene44164:CDS | 70.0% | |
| GCCGAGGTGGTCGAGCTCCA+TGG | - | chr1.3:59288924-59288943 | None:intergenic | 70.0% | |
| ! | CACCGTAAGTGCCGCCGAGG+TGG | - | chr1.3:59288937-59288956 | None:intergenic | 70.0% |
| ! | TGCCACCGTAAGTGCCGCCG+AGG | - | chr1.3:59288940-59288959 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59288770 | 59290371 | 59288770 | ID=MS.gene44164 |
| chr1.3 | mRNA | 59288770 | 59290371 | 59288770 | ID=MS.gene44164.t1;Parent=MS.gene44164 |
| chr1.3 | exon | 59288770 | 59289059 | 59288770 | ID=MS.gene44164.t1.exon1;Parent=MS.gene44164.t1 |
| chr1.3 | CDS | 59288770 | 59289059 | 59288770 | ID=cds.MS.gene44164.t1;Parent=MS.gene44164.t1 |
| chr1.3 | exon | 59289154 | 59289275 | 59289154 | ID=MS.gene44164.t1.exon2;Parent=MS.gene44164.t1 |
| chr1.3 | CDS | 59289154 | 59289275 | 59289154 | ID=cds.MS.gene44164.t1;Parent=MS.gene44164.t1 |
| chr1.3 | exon | 59289379 | 59289469 | 59289379 | ID=MS.gene44164.t1.exon3;Parent=MS.gene44164.t1 |
| chr1.3 | CDS | 59289379 | 59289469 | 59289379 | ID=cds.MS.gene44164.t1;Parent=MS.gene44164.t1 |
| chr1.3 | exon | 59290044 | 59290158 | 59290044 | ID=MS.gene44164.t1.exon4;Parent=MS.gene44164.t1 |
| chr1.3 | CDS | 59290044 | 59290158 | 59290044 | ID=cds.MS.gene44164.t1;Parent=MS.gene44164.t1 |
| chr1.3 | exon | 59290249 | 59290371 | 59290249 | ID=MS.gene44164.t1.exon5;Parent=MS.gene44164.t1 |
| chr1.3 | CDS | 59290249 | 59290371 | 59290249 | ID=cds.MS.gene44164.t1;Parent=MS.gene44164.t1 |
| Gene Sequence |
| Protein sequence |
