AlfalfaGEDB | MS.gene45558

M. sativa cultivar XinJiangDaYe / MS.gene45558

KEGG: -
GO: -
PFAM: PF04707.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45558.t1	RHN79491.1	99.5	183	1	0	1	183	1	183	4.70E-101	377.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45558.t1	Q6GM21	31.9	182	110	6	2	179	1	172	1.4e-16	87.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45558.t1	A0A396JRU3	99.5	183	1	0	1	183	1	183	3.4e-101	377.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049807	MS.gene45558	0.804569	2.03E-49	-1.69E-46
MS.gene050945	MS.gene45558	0.800587	1.34E-48	-1.69E-46
MS.gene051676	MS.gene45558	0.810672	1.03E-50	-1.69E-46
MS.gene051699	MS.gene45558	0.819102	1.39E-52	-1.69E-46
MS.gene051902	MS.gene45558	0.823914	1.07E-53	-1.69E-46
MS.gene052239	MS.gene45558	-0.80197	7.00E-49	-1.69E-46
MS.gene052242	MS.gene45558	-0.807154	5.81E-50	-1.69E-46
MS.gene052533	MS.gene45558	0.807023	6.19E-50	-1.69E-46
MS.gene052932	MS.gene45558	0.801018	1.10E-48	-1.69E-46
MS.gene053298	MS.gene45558	0.805291	1.43E-49	-1.69E-46

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45558.t1	MTR_8g096810	98.361	183	3	1	183	1	183	5.27e-136	377
MS.gene45558.t1	MTR_1g058050	98.907	183	2	1	183	77	259	1.24e-135	379
MS.gene45558.t1	MTR_2g098170	98.361	183	3	1	183	1	183	2.83e-135	375
MS.gene45558.t1	MTR_2g017985	97.268	183	5	1	183	1	183	8.94e-135	374

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45558.t1	AT5G13070	72.376	181	48	1	1	179	1	181	4.84e-102	291

Showing 1 to 1 of 1 entries

Previous1Next

Find 41 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGTTTATAACCATCCA+TGG	0.481341	2.1:+6129910	MS.gene45558:CDS
AACCGTTCGTTGTCCGTGGC+TGG	0.420484	2.1:+6130070	MS.gene45558:CDS
AACGAGTAACCTCGGCATCA+TGG	0.564625	2.1:+6129934	MS.gene45558:CDS
ACAAACCTTGATTCATCCTC+TGG	0.420030	2.1:+6130023	MS.gene45558:CDS
ACATGTTTATAACCATCCAT+GGG	0.656615	2.1:+6129911	MS.gene45558:CDS
AGAGTAGAGATGTTATGGAG+AGG	0.605987	2.1:+6130372	MS.gene45558:CDS
AGGTTACTCGTTCCCATGGA+TGG	0.512718	2.1:-6129923	None:intergenic
ATAATCCTTCGTACCAGCCA+CGG	0.637876	2.1:-6130083	None:intergenic
ATAGAAGCCAAAGCAGACAA+TGG	0.655161	2.1:-6130296	None:intergenic
ATCCTGATAATCCGAATGGA+TGG	0.575753	2.1:+6130237	MS.gene45558:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATGTTTATAACCATCCA+TGG	+	chr2.1:6129910-6129929	MS.gene45558:CDS	30.0%
ACATGTTTATAACCATCCAT+GGG	+	chr2.1:6129911-6129930	MS.gene45558:CDS	30.0%
TATGGAGAAGTTTATTGAAG+TGG	+	chr2.1:6130190-6130209	MS.gene45558:CDS	30.0%
GAGGATTTGCAAATATCTTG+AGG	+	chr2.1:6130391-6130410	MS.gene45558:CDS	35.0%
GATTAAACCATTGTCTGCTT+TGG	+	chr2.1:6130289-6130308	MS.gene45558:CDS	35.0%
TGCTAAGAGTAGAGATGTTA+TGG	+	chr2.1:6130367-6130386	MS.gene45558:CDS	35.0%
ACAAACCTTGATTCATCCTC+TGG	+	chr2.1:6130023-6130042	MS.gene45558:CDS	40.0%
AGAGTAGAGATGTTATGGAG+AGG	+	chr2.1:6130372-6130391	MS.gene45558:CDS	40.0%
ATAGAAGCCAAAGCAGACAA+TGG	-	chr2.1:6130299-6130318	None:intergenic	40.0%
ATCCTGATAATCCGAATGGA+TGG	+	chr2.1:6130237-6130256	MS.gene45558:CDS	40.0%

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	6129888	6130439	6129888	ID=MS.gene45558
chr2.1	mRNA	6129888	6130439	6129888	ID=MS.gene45558.t1;Parent=MS.gene45558
chr2.1	exon	6129888	6130439	6129888	ID=MS.gene45558.t1.exon1;Parent=MS.gene45558.t1
chr2.1	CDS	6129888	6130439	6129888	ID=cds.MS.gene45558.t1;Parent=MS.gene45558.t1

Gene Sequence

>MS.gene45558

ATGGTGAAATCATACAAACAAGAACATGTTTATAACCATCCATGGGAACGAGTAACCTCGGCATCATGGCGAAAATTCACCGACGCCGAAAACAAACGTGTTTTACCACACATTCTCGATTGCAATACATTGAACACAAACCTTGATTCATCCTCTGGGAAGCTATACGCGACACGTGCTATAACCGTTCGTTGTCCGTGGCTGGTACGAAGGATTATCGGTGAAGATATTTGTCATTGTGTTGAATCAACTGTCGTGGATGCAAAATCGCGGTCGATGCAGATTTGTTATAGGAATATTAGTATGGAGAAGTTTATTGAAGTGGAAGAGAAGACTAGGTATGATCCTCATCCTGATAATCCGAATGGATGGACTGTTTGTCAGCAGGAGACGAGGATTCGGATTAAACCATTGTCTGCTTTGGCTTCTATGGCGGAGAAAGTTGAGCAGAGGTGTGCTGATAGGTTTCTTCAGAATAGTGCTAAGAGTAGAGATGTTATGGAGAGGATTTGCAAATATCTTGAGGCTGAGTCTAGCTCATTTTCCTTGTGA

Protein sequence

>MS.gene45558.t1

MVKSYKQEHVYNHPWERVTSASWRKFTDAENKRVLPHILDCNTLNTNLDSSSGKLYATRAITVRCPWLVRRIIGEDICHCVESTVVDAKSRSMQICYRNISMEKFIEVEEKTRYDPHPDNPNGWTVCQQETRIRIKPLSALASMAEKVEQRCADRFLQNSAKSRDVMERICKYLEAESSSFSL