Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46488.t1 | XP_013467694.1 | 98.2 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 1.20E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46488.t1 | O65731 | 93.8 | 178 | 10 | 1 | 45 | 221 | 2 | 179 | 1.4e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46488.t1 | A0A072VJE7 | 98.2 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 9.0e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene46488 | 0.805678 | 1.19E-49 | -1.69E-46 |
| MS.gene050916 | MS.gene46488 | 0.826344 | 2.86E-54 | -1.69E-46 |
| MS.gene051330 | MS.gene46488 | 0.830482 | 2.86E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene46488 | 0.84796 | 8.31E-60 | -1.69E-46 |
| MS.gene051748 | MS.gene46488 | 0.838112 | 3.49E-57 | -1.69E-46 |
| MS.gene051850 | MS.gene46488 | 0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene46488 | 0.851703 | 7.47E-61 | -1.69E-46 |
| MS.gene052947 | MS.gene46488 | 0.851776 | 7.12E-61 | -1.69E-46 |
| MS.gene053109 | MS.gene46488 | 0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene46488 | 0.834068 | 3.71E-56 | -1.69E-46 |
| MS.gene055424 | MS.gene46488 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene46488 | 0.824509 | 7.77E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene46488 | 0.808435 | 3.10E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene46488 | 0.814183 | 1.75E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene46488 | 0.811993 | 5.30E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene46488 | 0.832655 | 8.35E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene46488 | 0.845257 | 4.55E-59 | -1.69E-46 |
| MS.gene06001 | MS.gene46488 | 0.872965 | 2.12E-67 | -1.69E-46 |
| MS.gene06011 | MS.gene46488 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene46488 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene46488 | 0.8132 | 2.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46488.t1 | MTR_1g054310 | 98.190 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 7.09e-163 | 449 |
| MS.gene46488.t1 | MTR_7g107380 | 96.703 | 182 | 4 | 1 | 40 | 221 | 9 | 188 | 1.47e-128 | 361 |
| MS.gene46488.t1 | MTR_0515s0010 | 89.744 | 78 | 8 | 0 | 76 | 153 | 3 | 80 | 5.68e-47 | 150 |
| MS.gene46488.t1 | MTR_0306s0010 | 89.744 | 78 | 8 | 0 | 76 | 153 | 3 | 80 | 5.68e-47 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46488.t1 | AT2G37270 | 91.279 | 172 | 14 | 1 | 51 | 221 | 18 | 189 | 9.01e-116 | 329 |
| MS.gene46488.t1 | AT2G37270 | 91.279 | 172 | 14 | 1 | 51 | 221 | 18 | 189 | 9.01e-116 | 329 |
| MS.gene46488.t1 | AT3G11940 | 88.953 | 172 | 18 | 1 | 51 | 221 | 18 | 189 | 6.83e-114 | 324 |
| MS.gene46488.t1 | AT3G11940 | 88.953 | 172 | 18 | 1 | 51 | 221 | 18 | 189 | 6.83e-114 | 324 |
Find 55 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCAATGCACCAAAATT+AGG | 0.162365 | 1.1:+42159756 | MS.gene46488:CDS |
| GCATCAACAATGACCTGAAT+TGG | 0.291343 | 1.1:-42160718 | None:intergenic |
| CAGATTACTGATTTGTCTCT+TGG | 0.294356 | 1.1:+42160481 | MS.gene46488:intron |
| GAACCAATGCACCAAAATTA+GGG | 0.331625 | 1.1:+42159757 | MS.gene46488:CDS |
| GATACTCGAAGAAGCGATTC+AGG | 0.345165 | 1.1:+42160560 | MS.gene46488:CDS |
| AGCTTGACTTCGATCAGGTT+TGG | 0.359219 | 1.1:-42159975 | None:intergenic |
| CATTCTCAGCAGCTTCAGTT+TGG | 0.372538 | 1.1:+42159803 | MS.gene46488:CDS |
| CTGGAGCTTCGATGACGTTC+AGG | 0.377509 | 1.1:+42160007 | MS.gene46488:CDS |
| CAATGACCTGAATTGGGTTC+TGG | 0.383650 | 1.1:-42160711 | None:intergenic |
| TGGAACATATGTTGCATGTT+TGG | 0.388336 | 1.1:-42160524 | None:intergenic |
| AGATTACTGATTTGTCTCTT+GGG | 0.391228 | 1.1:+42160482 | MS.gene46488:intron |
| GGATCTGAAACGACTGCAAC+AGG | 0.391313 | 1.1:-42159954 | None:intergenic |
| AACCGACCAGAACCCAATTC+AGG | 0.402601 | 1.1:+42160705 | MS.gene46488:CDS |
| GAAAGAAGCTTATGGCTGTT+AGG | 0.402629 | 1.1:+42160647 | MS.gene46488:CDS |
| CAAACTGAAGCTGCTGAGAA+TGG | 0.431599 | 1.1:-42159802 | None:intergenic |
| TTGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 1.1:+42160731 | MS.gene46488:CDS |
| GCCATCTATCTTCTAACTAC+TGG | 0.451088 | 1.1:+42162611 | MS.gene46488:CDS |
| GAACTTATTAATGCAGCAAA+AGG | 0.453667 | 1.1:+42162689 | MS.gene46488:CDS |
| GAACAATGGAAAGAAGCTTA+TGG | 0.462961 | 1.1:+42160639 | MS.gene46488:CDS |
| AATTGTCTTAATATTTCTAA+AGG | 0.465228 | 1.1:-42162648 | None:intergenic |
| CGTGAAGATGCTACTCGTAT+TGG | 0.468388 | 1.1:+42162527 | MS.gene46488:CDS |
| TGAAGAGCTTGACTTCGATC+AGG | 0.472581 | 1.1:-42159980 | None:intergenic |
| CAGCAAAAGGATCATCCAAC+AGG | 0.484289 | 1.1:+42162702 | MS.gene46488:CDS |
| TATGTGATAAACCCTAATTT+TGG | 0.490722 | 1.1:-42159768 | None:intergenic |
| GCTACTCGTATTGGTTCTGC+TGG | 0.495376 | 1.1:+42162536 | MS.gene46488:CDS |
| GATTACTGATTTGTCTCTTG+GGG | 0.496398 | 1.1:+42160483 | MS.gene46488:intron |
| AAGTCAAGCTCTTCAACCGC+TGG | 0.503610 | 1.1:+42159988 | MS.gene46488:CDS |
| CATCAACAATGACCTGAATT+GGG | 0.506610 | 1.1:-42160717 | None:intergenic |
| ACCAGTAGTTAGAAGATAGA+TGG | 0.507365 | 1.1:-42162612 | None:intergenic |
| TTGTCTCTTGGGGATTACAT+TGG | 0.513322 | 1.1:+42160493 | MS.gene46488:CDS |
| GGCTTGATTCACACGACGAA+GGG | 0.519901 | 1.1:-42162591 | None:intergenic |
| TGCTGGAGTTGTAAGAAGAC+AGG | 0.532743 | 1.1:+42162553 | MS.gene46488:CDS |
| AACCGTGATTGAGGTGGATG+CGG | 0.535990 | 1.1:-42159829 | None:intergenic |
| ACATATGTTCCACACACTGC+TGG | 0.537649 | 1.1:+42160535 | MS.gene46488:CDS |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 1.1:-42160595 | None:intergenic |
| TAGGATCATCAAGCATGCTA+TGG | 0.558540 | 1.1:+42160666 | MS.gene46488:CDS |
| CTAACTCTCTCATGATGCAT+GGG | 0.561374 | 1.1:+42160614 | MS.gene46488:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 1.1:-42160596 | None:intergenic |
| ACTAACTCTCTCATGATGCA+TGG | 0.563337 | 1.1:+42160613 | MS.gene46488:CDS |
| ATGATGCATGGGAGGAACAA+TGG | 0.566550 | 1.1:+42160625 | MS.gene46488:CDS |
| AAATGAACGAACCGTGATTG+AGG | 0.567407 | 1.1:-42159838 | None:intergenic |
| AGTTGTAAGAAGACAGGCTG+TGG | 0.574582 | 1.1:+42162559 | MS.gene46488:CDS |
| TGCCGCATCCACCTCAATCA+CGG | 0.580034 | 1.1:+42159827 | MS.gene46488:CDS |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 1.1:+42160587 | MS.gene46488:CDS |
| TTCTTCAATGACATCAGCCA+TGG | 0.596830 | 1.1:-42159931 | None:intergenic |
| GACCTGAATTGGGTTCTGGT+CGG | 0.606242 | 1.1:-42160707 | None:intergenic |
| GAAGCTGCTGAGAATGGAGA+AGG | 0.631702 | 1.1:-42159796 | None:intergenic |
| GAGTATCTACCAGCAGTGTG+TGG | 0.639793 | 1.1:-42160544 | None:intergenic |
| TGAACGAACCGTGATTGAGG+TGG | 0.645612 | 1.1:-42159835 | None:intergenic |
| ACTCTCTCATGATGCATGGG+AGG | 0.648954 | 1.1:+42160617 | MS.gene46488:CDS |
| GAACGTCATCGAAGCTCCAG+CGG | 0.655762 | 1.1:-42160004 | None:intergenic |
| TGCTGAGAATGGAGAAGGTG+TGG | 0.656611 | 1.1:-42159791 | None:intergenic |
| TGGCTTGATTCACACGACGA+AGG | 0.656812 | 1.1:-42162592 | None:intergenic |
| GCTTGATTCACACGACGAAG+GGG | 0.665666 | 1.1:-42162590 | None:intergenic |
| ATACGAGTAGCATCTTCACG+AGG | 0.785565 | 1.1:-42162524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAATTCTATTTATTA+AGG | - | chr1.1:42162231-42162250 | None:intergenic | 10.0% |
| !! | AATTTAAACAAAAAATTAAC+TGG | - | chr1.1:42160964-42160983 | None:intergenic | 10.0% |
| !! | TTAGAAATTAATAAGAAATA+TGG | + | chr1.1:42161665-42161684 | MS.gene46488:intron | 10.0% |
| !!! | TTCTTTTTTTAAATTTTTTC+TGG | + | chr1.1:42161209-42161228 | MS.gene46488:intron | 10.0% |
| !! | ATATTAAAAAAACAATAAGC+TGG | - | chr1.1:42161337-42161356 | None:intergenic | 15.0% |
| !! | TAAATTCTAATTTGACATAT+TGG | + | chr1.1:42160978-42160997 | MS.gene46488:intron | 15.0% |
| !!! | AATTGTCTTAATATTTCTAA+AGG | - | chr1.1:42162651-42162670 | None:intergenic | 15.0% |
| !!! | TAATATTTCTATGTTTTTGA+TGG | + | chr1.1:42161115-42161134 | MS.gene46488:intron | 15.0% |
| !!! | TTTTAATTAGTTTCATGTTT+AGG | + | chr1.1:42160059-42160078 | MS.gene46488:intron | 15.0% |
| !! | AAAAAATTAACTGGAATGTT+AGG | - | chr1.1:42160955-42160974 | None:intergenic | 20.0% |
| !! | AAAAATGTAGTGATTAATGT+TGG | + | chr1.1:42160438-42160457 | MS.gene46488:intron | 20.0% |
| !! | AAAAGGTAGTAGTATATTAA+TGG | - | chr1.1:42162450-42162469 | None:intergenic | 20.0% |
| !! | AATTGAAAATAAAAATGAGC+TGG | - | chr1.1:42161965-42161984 | None:intergenic | 20.0% |
| !! | ATTGAAAATAAAAATGAGCT+GGG | - | chr1.1:42161964-42161983 | None:intergenic | 20.0% |
| !! | GTATTTGAAAGGAAAAAAAT+TGG | - | chr1.1:42161809-42161828 | None:intergenic | 20.0% |
| !! | GTTATCATAAATAAACACTT+TGG | + | chr1.1:42161089-42161108 | MS.gene46488:intron | 20.0% |
| !!! | AAATTTTTTCTGGTTTGATA+TGG | + | chr1.1:42161219-42161238 | MS.gene46488:intron | 20.0% |
| !!! | ATGAATAATTTGTTTCCTAT+TGG | + | chr1.1:42161883-42161902 | MS.gene46488:intron | 20.0% |
| !!! | ATGAATATTTGTTTTCCTAT+TGG | + | chr1.1:42161549-42161568 | MS.gene46488:intron | 20.0% |
| !!! | TTTGTTGAAATTTTTGTAGT+TGG | + | chr1.1:42160148-42160167 | MS.gene46488:intron | 20.0% |
| !!! | TTTTATTTTCTGGTTTGATA+TGG | + | chr1.1:42160847-42160866 | MS.gene46488:intron | 20.0% |
| !!! | TTTTGTTATTCCAGATTATT+TGG | + | chr1.1:42160275-42160294 | MS.gene46488:intron | 20.0% |
| ! | AAAAAAAGAACAACCTAATC+AGG | - | chr1.1:42161199-42161218 | None:intergenic | 25.0% |
| ! | ATCAGATCCAAATTCAAAAA+AGG | - | chr1.1:42162467-42162486 | None:intergenic | 25.0% |
| ! | ATGAATATTTGTTTCCCTAT+TGG | + | chr1.1:42161253-42161272 | MS.gene46488:intron | 25.0% |
| ! | ATTTGTGTATTACTTGTGAT+TGG | + | chr1.1:42162289-42162308 | MS.gene46488:intron | 25.0% |
| ! | CATTACTAACGAAACATAAA+GGG | - | chr1.1:42161020-42161039 | None:intergenic | 25.0% |
| ! | CTTTACTAATGAAACATATG+AGG | - | chr1.1:42161405-42161424 | None:intergenic | 25.0% |
| ! | TAAAACAAATTGCATCATTC+TGG | - | chr1.1:42161287-42161306 | None:intergenic | 25.0% |
| ! | TAATTATTGTGATCCTGATT+AGG | + | chr1.1:42161183-42161202 | MS.gene46488:intron | 25.0% |
| ! | TCATTACTAACGAAACATAA+AGG | - | chr1.1:42161021-42161040 | None:intergenic | 25.0% |
| ! | TCTCTTATAAGTAACACAAA+AGG | - | chr1.1:42161716-42161735 | None:intergenic | 25.0% |
| ! | TTCATGAGTTATGATTATCT+TGG | + | chr1.1:42162055-42162074 | MS.gene46488:intron | 25.0% |
| ! | TTCATTAGTAAAGACTGTTA+AGG | + | chr1.1:42161412-42161431 | MS.gene46488:intron | 25.0% |
| !! | TATGTGATAAACCCTAATTT+TGG | - | chr1.1:42159771-42159790 | None:intergenic | 25.0% |
| !!! | ACTACTACCTTTTTTGAATT+TGG | + | chr1.1:42162457-42162476 | MS.gene46488:intron | 25.0% |
| !!! | ATGAATTTTTGTTTCCCTAT+TGG | + | chr1.1:42160881-42160900 | MS.gene46488:intron | 25.0% |
| AATACAAATTGCCATCATTC+TGG | - | chr1.1:42161583-42161602 | None:intergenic | 30.0% | |
| AATGGCATATTTAAGCAACA+AGG | - | chr1.1:42162321-42162340 | None:intergenic | 30.0% | |
| ACAAGAAACACCAAATAATC+TGG | - | chr1.1:42160288-42160307 | None:intergenic | 30.0% | |
| ATATTAACCCTTTAGACGAT+GGG | - | chr1.1:42162369-42162388 | None:intergenic | 30.0% | |
| ATGATTCACACGTATTTGAA+AGG | - | chr1.1:42161820-42161839 | None:intergenic | 30.0% | |
| GAAACTGCGATAATAAGAAT+CGG | + | chr1.1:42162120-42162139 | MS.gene46488:intron | 30.0% | |
| GAACTTATTAATGCAGCAAA+AGG | + | chr1.1:42162689-42162708 | MS.gene46488:CDS | 30.0% | |
| GTTAATATGGACTTGCAATT+AGG | + | chr1.1:42162381-42162400 | MS.gene46488:intron | 30.0% | |
| TAGTGTTATGATTTACTTGC+TGG | + | chr1.1:42161839-42161858 | MS.gene46488:intron | 30.0% | |
| TTATTTACCCATCGTCTAAA+GGG | + | chr1.1:42162359-42162378 | MS.gene46488:intron | 30.0% | |
| TTCGTTAGTAATGATTGTTG+AGG | + | chr1.1:42161027-42161046 | MS.gene46488:intron | 30.0% | |
| ! | ATGATTGGTTATTTCCCTAT+TGG | + | chr1.1:42162154-42162173 | MS.gene46488:intron | 30.0% |
| ! | TATGAATCGTTGATTGTTGA+TGG | + | chr1.1:42160754-42160773 | MS.gene46488:intron | 30.0% |
| !! | AGATTACTGATTTGTCTCTT+GGG | + | chr1.1:42160482-42160501 | MS.gene46488:intron | 30.0% |
| !!! | TATTTTCTGGTTTGATATGG+AGG | + | chr1.1:42160850-42160869 | MS.gene46488:intron | 30.0% |
| AAAAAATGGCCTAGAATGTC+AGG | - | chr1.1:42161625-42161644 | None:intergenic | 35.0% | |
| AAACGAACAATGAGAAACAG+TGG | - | chr1.1:42159901-42159920 | None:intergenic | 35.0% | |
| AAGCTGGAATGATATGAGAA+TGG | - | chr1.1:42161321-42161340 | None:intergenic | 35.0% | |
| AATGAGCTGGGAAATAAGAA+TGG | - | chr1.1:42161952-42161971 | None:intergenic | 35.0% | |
| ACCAGTAGTTAGAAGATAGA+TGG | - | chr1.1:42162615-42162634 | None:intergenic | 35.0% | |
| AGAAACAGTGGATACAGAAA+AGG | - | chr1.1:42159889-42159908 | None:intergenic | 35.0% | |
| ATACATAAGTGCCATCATCA+AGG | - | chr1.1:42162188-42162207 | None:intergenic | 35.0% | |
| ATCAAGGCAATCAAACCAAT+AGG | - | chr1.1:42162172-42162191 | None:intergenic | 35.0% | |
| ATGCCATTGTTTACTTTCTG+TGG | + | chr1.1:42162333-42162352 | MS.gene46488:intron | 35.0% | |
| CAACCACAGAAAGTAAACAA+TGG | - | chr1.1:42162339-42162358 | None:intergenic | 35.0% | |
| CAAGTAATACACAAATGACG+AGG | - | chr1.1:42162285-42162304 | None:intergenic | 35.0% | |
| CATATTAACCCTTTAGACGA+TGG | - | chr1.1:42162370-42162389 | None:intergenic | 35.0% | |
| CATCAACAATGACCTGAATT+GGG | - | chr1.1:42160720-42160739 | None:intergenic | 35.0% | |
| CATCGTCTAAAGGGTTAATA+TGG | + | chr1.1:42162368-42162387 | MS.gene46488:intron | 35.0% | |
| GAACAATGGAAAGAAGCTTA+TGG | + | chr1.1:42160639-42160658 | MS.gene46488:CDS | 35.0% | |
| GAACCAATGCACCAAAATTA+GGG | + | chr1.1:42159757-42159776 | MS.gene46488:CDS | 35.0% | |
| GTTATTTACCCATCGTCTAA+AGG | + | chr1.1:42162358-42162377 | MS.gene46488:intron | 35.0% | |
| TAACTGGAATGTTAGGAGAA+TGG | - | chr1.1:42160948-42160967 | None:intergenic | 35.0% | |
| TCAAGGCAATCAAACCAATA+GGG | - | chr1.1:42162171-42162190 | None:intergenic | 35.0% | |
| TGAACCAATGCACCAAAATT+AGG | + | chr1.1:42159756-42159775 | MS.gene46488:CDS | 35.0% | |
| TGGAACATATGTTGCATGTT+TGG | - | chr1.1:42160527-42160546 | None:intergenic | 35.0% | |
| TGTTTGTGTATTTGTCGTGA+TGG | + | chr1.1:42161505-42161524 | MS.gene46488:intron | 35.0% | |
| !! | AAACCCTAATTTTGGTGCAT+TGG | - | chr1.1:42159763-42159782 | None:intergenic | 35.0% |
| !! | CAGATTACTGATTTGTCTCT+TGG | + | chr1.1:42160481-42160500 | MS.gene46488:intron | 35.0% |
| !! | GATTACTGATTTGTCTCTTG+GGG | + | chr1.1:42160483-42160502 | MS.gene46488:intron | 35.0% |
| !! | TCTATGTTTTTGATGGCTGT+AGG | + | chr1.1:42161122-42161141 | MS.gene46488:intron | 35.0% |
| !! | TTCTGGTTTGATATGGTGAA+TGG | + | chr1.1:42161226-42161245 | MS.gene46488:intron | 35.0% |
| AAATGAACGAACCGTGATTG+AGG | - | chr1.1:42159841-42159860 | None:intergenic | 40.0% | |
| AATACAAGCTGCCATCATTC+TGG | - | chr1.1:42161917-42161936 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+TGG | + | chr1.1:42160613-42160632 | MS.gene46488:CDS | 40.0% | |
| ACTCTTGCAGTCAAACCAAT+AGG | - | chr1.1:42160899-42160918 | None:intergenic | 40.0% | |
| ATTCTGGCAGTCAAACCAAT+AGG | - | chr1.1:42161271-42161290 | None:intergenic | 40.0% | |
| CATACACAAGACAGATCTCA+CGG | - | chr1.1:42161163-42161182 | None:intergenic | 40.0% | |
| CGAAGATTCGAAGAATGTGA+AGG | - | chr1.1:42159864-42159883 | None:intergenic | 40.0% | |
| CTAACTCTCTCATGATGCAT+GGG | + | chr1.1:42160614-42160633 | MS.gene46488:CDS | 40.0% | |
| CTCTTGCAGTCAAACCAATA+GGG | - | chr1.1:42160898-42160917 | None:intergenic | 40.0% | |
| GAAAGAAGCTTATGGCTGTT+AGG | + | chr1.1:42160647-42160666 | MS.gene46488:CDS | 40.0% | |
| GCATCAACAATGACCTGAAT+TGG | - | chr1.1:42160721-42160740 | None:intergenic | 40.0% | |
| GCCATCTATCTTCTAACTAC+TGG | + | chr1.1:42162611-42162630 | MS.gene46488:CDS | 40.0% | |
| TAGGATCATCAAGCATGCTA+TGG | + | chr1.1:42160666-42160685 | MS.gene46488:CDS | 40.0% | |
| TCGGAGAATGACATGATGAT+TGG | + | chr1.1:42162139-42162158 | MS.gene46488:intron | 40.0% | |
| TGATGGCTTAGAATGGAGAA+TGG | + | chr1.1:42161522-42161541 | MS.gene46488:intron | 40.0% | |
| TGGTTTGATTGCCTTGATGA+TGG | + | chr1.1:42162174-42162193 | MS.gene46488:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr1.1:42160598-42160617 | None:intergenic | 40.0% | |
| TTCTGGCAGTCAAACCAATA+GGG | - | chr1.1:42161270-42161289 | None:intergenic | 40.0% | |
| TTCTTCAATGACATCAGCCA+TGG | - | chr1.1:42159934-42159953 | None:intergenic | 40.0% | |
| TTGTCTCTTGGGGATTACAT+TGG | + | chr1.1:42160493-42160512 | MS.gene46488:CDS | 40.0% | |
| TTTGTCGTGATGGCTTAGAA+TGG | + | chr1.1:42161515-42161534 | MS.gene46488:intron | 40.0% | |
| !! | TACTTGCTGGCTTGATTTGA+AGG | + | chr1.1:42161852-42161871 | MS.gene46488:intron | 40.0% |
| !! | TTCTGGTTTGATATGGAGGA+TGG | + | chr1.1:42160854-42160873 | MS.gene46488:intron | 40.0% |
| ACATATGTTCCACACACTGC+TGG | + | chr1.1:42160535-42160554 | MS.gene46488:CDS | 45.0% | |
| AGCTTGACTTCGATCAGGTT+TGG | - | chr1.1:42159978-42159997 | None:intergenic | 45.0% | |
| AGTTGTAAGAAGACAGGCTG+TGG | + | chr1.1:42162559-42162578 | MS.gene46488:CDS | 45.0% | |
| ATACGAGTAGCATCTTCACG+AGG | - | chr1.1:42162527-42162546 | None:intergenic | 45.0% | |
| ATGATGCATGGGAGGAACAA+TGG | + | chr1.1:42160625-42160644 | MS.gene46488:CDS | 45.0% | |
| ATTCTGGCGGTCAAACCAAT+AGG | - | chr1.1:42161901-42161920 | None:intergenic | 45.0% | |
| CAAACTGAAGCTGCTGAGAA+TGG | - | chr1.1:42159805-42159824 | None:intergenic | 45.0% | |
| CAATGACCTGAATTGGGTTC+TGG | - | chr1.1:42160714-42160733 | None:intergenic | 45.0% | |
| CACTTGTGTCCTTTGTACAG+TGG | + | chr1.1:42162500-42162519 | MS.gene46488:intron | 45.0% | |
| CATTCTCAGCAGCTTCAGTT+TGG | + | chr1.1:42159803-42159822 | MS.gene46488:CDS | 45.0% | |
| CGTGAAGATGCTACTCGTAT+TGG | + | chr1.1:42162527-42162546 | MS.gene46488:CDS | 45.0% | |
| GACCATTCTCCTGACATTCT+AGG | + | chr1.1:42161613-42161632 | MS.gene46488:intron | 45.0% | |
| GATACTCGAAGAAGCGATTC+AGG | + | chr1.1:42160560-42160579 | MS.gene46488:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr1.1:42160599-42160618 | None:intergenic | 45.0% | |
| TGAAGAGCTTGACTTCGATC+AGG | - | chr1.1:42159983-42160002 | None:intergenic | 45.0% | |
| TGCTGGAGTTGTAAGAAGAC+AGG | + | chr1.1:42162553-42162572 | MS.gene46488:CDS | 45.0% | |
| TGGTTTGACTGCCAGAATGA+TGG | + | chr1.1:42161273-42161292 | MS.gene46488:intron | 45.0% | |
| TTCGTTTCTCTATGCAGCCA+TGG | + | chr1.1:42159914-42159933 | MS.gene46488:intron | 45.0% | |
| TTGTTGATGCTGTCGTCAAC+AGG | + | chr1.1:42160731-42160750 | MS.gene46488:CDS | 45.0% | |
| !! | TGCTGGCTTGATTTGAAGGA+TGG | + | chr1.1:42161856-42161875 | MS.gene46488:intron | 45.0% |
| !! | AAAAAATTATTTCAATTAAT+TGG | + | chr1.1:42160390-42160409 | MS.gene46488:intron | 5.0% |
| !!! | TTTTATTAGATATAAAAAAA+TGG | - | chr1.1:42161639-42161658 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTATTTTATTTTC+TGG | + | chr1.1:42160837-42160856 | MS.gene46488:intron | 5.0% |
| AACCGACCAGAACCCAATTC+AGG | + | chr1.1:42160705-42160724 | MS.gene46488:CDS | 50.0% | |
| AACCGTGATTGAGGTGGATG+CGG | - | chr1.1:42159832-42159851 | None:intergenic | 50.0% | |
| AAGTCAAGCTCTTCAACCGC+TGG | + | chr1.1:42159988-42160007 | MS.gene46488:CDS | 50.0% | |
| ACAAGCTGCCATCATTCTGG+CGG | - | chr1.1:42161914-42161933 | None:intergenic | 50.0% | |
| ACTCTCTCATGATGCATGGG+AGG | + | chr1.1:42160617-42160636 | MS.gene46488:CDS | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr1.1:42160587-42160606 | MS.gene46488:CDS | 50.0% | |
| GAAGCTGCTGAGAATGGAGA+AGG | - | chr1.1:42159799-42159818 | None:intergenic | 50.0% | |
| GAGTATCTACCAGCAGTGTG+TGG | - | chr1.1:42160547-42160566 | None:intergenic | 50.0% | |
| GCTTGATTCACACGACGAAG+GGG | - | chr1.1:42162593-42162612 | None:intergenic | 50.0% | |
| GGCCTAGAATGTCAGGAGAA+TGG | - | chr1.1:42161618-42161637 | None:intergenic | 50.0% | |
| GGCTTGATTCACACGACGAA+GGG | - | chr1.1:42162594-42162613 | None:intergenic | 50.0% | |
| TCACGAGGACCACTGTACAA+AGG | - | chr1.1:42162512-42162531 | None:intergenic | 50.0% | |
| TGAACGAACCGTGATTGAGG+TGG | - | chr1.1:42159838-42159857 | None:intergenic | 50.0% | |
| TGCTGAGAATGGAGAAGGTG+TGG | - | chr1.1:42159794-42159813 | None:intergenic | 50.0% | |
| TGGCTTGATTCACACGACGA+AGG | - | chr1.1:42162595-42162614 | None:intergenic | 50.0% | |
| TGGTTTGACCGCCAGAATGA+TGG | + | chr1.1:42161903-42161922 | MS.gene46488:intron | 50.0% | |
| ! | GACCTGAATTGGGTTCTGGT+CGG | - | chr1.1:42160710-42160729 | None:intergenic | 50.0% |
| ! | GGATCTGAAACGACTGCAAC+AGG | - | chr1.1:42159957-42159976 | None:intergenic | 50.0% |
| !! | GCTACTCGTATTGGTTCTGC+TGG | + | chr1.1:42162536-42162555 | MS.gene46488:CDS | 50.0% |
| CTGGAGCTTCGATGACGTTC+AGG | + | chr1.1:42160007-42160026 | MS.gene46488:CDS | 55.0% | |
| GAACGTCATCGAAGCTCCAG+CGG | - | chr1.1:42160007-42160026 | None:intergenic | 55.0% | |
| TGCCGCATCCACCTCAATCA+CGG | + | chr1.1:42159827-42159846 | MS.gene46488:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42159755 | 42162723 | 42159755 | ID=MS.gene46488 |
| chr1.1 | mRNA | 42159755 | 42162723 | 42159755 | ID=MS.gene46488.t1;Parent=MS.gene46488 |
| chr1.1 | exon | 42159755 | 42159848 | 42159755 | ID=MS.gene46488.t1.exon1;Parent=MS.gene46488.t1 |
| chr1.1 | CDS | 42159755 | 42159848 | 42159755 | ID=cds.MS.gene46488.t1;Parent=MS.gene46488.t1 |
| chr1.1 | exon | 42159931 | 42160028 | 42159931 | ID=MS.gene46488.t1.exon2;Parent=MS.gene46488.t1 |
| chr1.1 | CDS | 42159931 | 42160028 | 42159931 | ID=cds.MS.gene46488.t1;Parent=MS.gene46488.t1 |
| chr1.1 | exon | 42160484 | 42160752 | 42160484 | ID=MS.gene46488.t1.exon3;Parent=MS.gene46488.t1 |
| chr1.1 | CDS | 42160484 | 42160752 | 42160484 | ID=cds.MS.gene46488.t1;Parent=MS.gene46488.t1 |
| chr1.1 | exon | 42162520 | 42162723 | 42162520 | ID=MS.gene46488.t1.exon4;Parent=MS.gene46488.t1 |
| chr1.1 | CDS | 42162520 | 42162723 | 42162520 | ID=cds.MS.gene46488.t1;Parent=MS.gene46488.t1 |
| Gene Sequence |
| Protein sequence |
