Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47958.t1 | XP_013446714.1 | 98 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.00E+00 | 1412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47958.t1 | Q9SS87 | 40.0 | 720 | 400 | 14 | 1 | 704 | 26 | 729 | 3.6e-150 | 533.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47958.t1 | A0A072TU76 | 98.0 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.0e+00 | 1412.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene47958 | 0.81147 | 6.89E-51 | -1.69E-46 |
| MS.gene049696 | MS.gene47958 | 0.808988 | 2.36E-50 | -1.69E-46 |
| MS.gene049698 | MS.gene47958 | 0.842608 | 2.33E-58 | -1.69E-46 |
| MS.gene05017 | MS.gene47958 | 0.819057 | 1.42E-52 | -1.69E-46 |
| MS.gene054118 | MS.gene47958 | 0.836582 | 8.60E-57 | -1.69E-46 |
| MS.gene055371 | MS.gene47958 | 0.835172 | 1.96E-56 | -1.69E-46 |
| MS.gene058351 | MS.gene47958 | 0.82249 | 2.30E-53 | -1.69E-46 |
| MS.gene058823 | MS.gene47958 | 0.81368 | 2.26E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene47958 | 0.999568 | 9.881313e-324 | -1.69E-46 |
| MS.gene058912 | MS.gene47958 | 0.997376 | 1.88E-241 | -1.69E-46 |
| MS.gene05894 | MS.gene47958 | 0.816114 | 6.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47958.t1 | MTR_8g089660 | 98.011 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.0 | 1444 |
| MS.gene47958.t1 | MTR_3g075450 | 52.991 | 702 | 316 | 8 | 7 | 704 | 15 | 706 | 0.0 | 745 |
| MS.gene47958.t1 | MTR_7g032660 | 43.723 | 693 | 375 | 11 | 20 | 704 | 26 | 711 | 0.0 | 570 |
| MS.gene47958.t1 | MTR_1g074950 | 32.521 | 698 | 402 | 20 | 17 | 703 | 23 | 662 | 1.70e-105 | 336 |
| MS.gene47958.t1 | MTR_1g074990 | 31.746 | 693 | 413 | 23 | 17 | 703 | 22 | 660 | 3.32e-100 | 322 |
| MS.gene47958.t1 | MTR_1g075095 | 31.124 | 694 | 418 | 23 | 17 | 703 | 22 | 662 | 3.14e-96 | 311 |
| MS.gene47958.t1 | MTR_1g075230 | 30.914 | 689 | 419 | 21 | 22 | 704 | 26 | 663 | 8.34e-95 | 308 |
| MS.gene47958.t1 | MTR_1g075030 | 30.836 | 694 | 420 | 23 | 17 | 703 | 22 | 662 | 3.05e-94 | 306 |
| MS.gene47958.t1 | MTR_1g040360 | 29.014 | 710 | 416 | 24 | 20 | 703 | 30 | 677 | 1.06e-77 | 263 |
| MS.gene47958.t1 | MTR_1g075170 | 25.301 | 664 | 369 | 25 | 88 | 704 | 84 | 667 | 3.09e-47 | 178 |
| MS.gene47958.t1 | MTR_1g075180 | 27.202 | 647 | 372 | 24 | 87 | 704 | 60 | 636 | 1.11e-46 | 176 |
| MS.gene47958.t1 | MTR_1g075153 | 25.645 | 620 | 396 | 19 | 101 | 704 | 93 | 663 | 3.26e-44 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47958.t1 | AT3G01680 | 39.973 | 728 | 389 | 14 | 1 | 704 | 26 | 729 | 0.0 | 540 |
| MS.gene47958.t1 | AT3G01670 | 37.260 | 730 | 401 | 14 | 5 | 704 | 120 | 822 | 2.49e-156 | 473 |
| MS.gene47958.t1 | AT3G01670 | 37.260 | 730 | 401 | 14 | 5 | 704 | 144 | 846 | 6.50e-156 | 473 |
| MS.gene47958.t1 | AT1G67790 | 27.273 | 704 | 454 | 20 | 13 | 700 | 3 | 664 | 2.79e-74 | 253 |
Find 0 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGATCAAAAGTTAAA+TGG | + | 57394:23670-23689 | None:intergenic | 15.0% |
| !!! | AGTATAATAATTGTTCTTTT+GGG | - | 57394:23689-23708 | MS.gene47958:CDS | 15.0% |
| !!! | TAGTATAATAATTGTTCTTT+TGG | - | 57394:23688-23707 | MS.gene47958:CDS | 15.0% |
| !! | ATATAGAGAATGAAAAACAT+AGG | + | 57394:23505-23524 | None:intergenic | 20.0% |
| !! | ATCTTATTATTCATTGTTTC+AGG | - | 57394:23905-23924 | MS.gene47958:intron | 20.0% |
| !! | GAATAATAAGATCAAAAGAA+CGG | + | 57394:23897-23916 | None:intergenic | 20.0% |
| !! | TTATAACAGACTTTATGAAT+CGG | + | 57394:23794-23813 | None:intergenic | 20.0% |
| !!! | AACATTAAGATATTTGTTGT+TGG | + | 57394:22317-22336 | None:intergenic | 20.0% |
| !!! | ATCTAGTTCTAGAAAATATT+CGG | + | 57394:21758-21777 | None:intergenic | 20.0% |
| !!! | TCATTATTTCTAGCATTATT+TGG | + | 57394:24217-24236 | None:intergenic | 20.0% |
| !!! | TTGTTTTGAAATTTTACACA+GGG | - | 57394:21384-21403 | MS.gene47958:CDS | 20.0% |
| ! | AATGTTATCAAGCTATTCAT+GGG | - | 57394:21885-21904 | MS.gene47958:intron | 25.0% |
| ! | AATTAACAAAATTTCATGCG+AGG | - | 57394:21488-21507 | MS.gene47958:CDS | 25.0% |
| ! | AGAAGAACCAAATTATTGTT+GGG | + | 57394:24133-24152 | None:intergenic | 25.0% |
| ! | ATTTAAACATGTAATTCCCA+TGG | + | 57394:23724-23743 | None:intergenic | 25.0% |
| ! | CAATATTGTCACTCATATTT+GGG | + | 57394:21696-21715 | None:intergenic | 25.0% |
| ! | CTTTGATTGCTAAAATATAG+CGG | - | 57394:22505-22524 | MS.gene47958:CDS | 25.0% |
| ! | GTTAATTAACTATGTGTTTG+TGG | - | 57394:21361-21380 | MS.gene47958:CDS | 25.0% |
| ! | TCAATATTGTCACTCATATT+TGG | + | 57394:21697-21716 | None:intergenic | 25.0% |
| ! | TCTGTTATAAACAATCTTCT+TGG | - | 57394:23804-23823 | MS.gene47958:CDS | 25.0% |
| !! | AAAGTCAATATGAACTTGTT+TGG | - | 57394:23134-23153 | MS.gene47958:intron | 25.0% |
| !! | TTATTCATTGTTTCAGGTAA+CGG | - | 57394:23911-23930 | MS.gene47958:intron | 25.0% |
| !!! | AACAATAATTTGGTTCTTCT+GGG | - | 57394:24133-24152 | MS.gene47958:intron | 25.0% |
| !!! | CTAAATCAAGTTGATGATTT+AGG | - | 57394:22036-22055 | MS.gene47958:intron | 25.0% |
| !!! | GTTGTTTTGAAATTTTACAC+AGG | - | 57394:21383-21402 | MS.gene47958:CDS | 25.0% |
| !!! | TGTTTTGCTTTGTTGTAATT+TGG | + | 57394:24183-24202 | None:intergenic | 25.0% |
| AAATACATATGCTTGTATGG+AGG | - | 57394:23939-23958 | MS.gene47958:intron | 30.0% | |
| AATACATATGCTTGTATGGA+GGG | - | 57394:23940-23959 | MS.gene47958:intron | 30.0% | |
| ACATCAACATGTTCTTCAAT+TGG | + | 57394:21221-21240 | None:intergenic | 30.0% | |
| ATATCTTGCAAGTGTATGAT+GGG | - | 57394:21823-21842 | MS.gene47958:intron | 30.0% | |
| ATTAACCTGTTACAATGATG+TGG | + | 57394:24425-24444 | None:intergenic | 30.0% | |
| ATTACAACAAAGCAAAACAG+TGG | - | 57394:24184-24203 | MS.gene47958:CDS | 30.0% | |
| CAGAAGAACCAAATTATTGT+TGG | + | 57394:24134-24153 | None:intergenic | 30.0% | |
| CGTCAACATTTAGGTAATTA+AGG | - | 57394:22482-22501 | MS.gene47958:CDS | 30.0% | |
| GAATGTTATCAAGCTATTCA+TGG | - | 57394:21884-21903 | MS.gene47958:intron | 30.0% | |
| GAGCTTGTAGAAACAATTTA+CGG | + | 57394:21672-21691 | None:intergenic | 30.0% | |
| GCATAACCAAACTAATAAAG+TGG | - | 57394:23540-23559 | MS.gene47958:CDS | 30.0% | |
| TAAATATGCATGCTAATGCA+TGG | + | 57394:21528-21547 | None:intergenic | 30.0% | |
| TAACATTCCAAGTATTCCTA+TGG | + | 57394:21872-21891 | None:intergenic | 30.0% | |
| TCTTGAACAACATTAAGTAG+AGG | + | 57394:21248-21267 | None:intergenic | 30.0% | |
| TGATCCATTACTCTTTGATT+GGG | - | 57394:23474-23493 | MS.gene47958:CDS | 30.0% | |
| TGTTACAAAAAATGCATTGC+CGG | - | 57394:21723-21742 | MS.gene47958:intron | 30.0% | |
| TTAGAACCTTAATGTTATCC+TGG | + | 57394:22755-22774 | None:intergenic | 30.0% | |
| TTGATCCATTACTCTTTGAT+TGG | - | 57394:23473-23492 | MS.gene47958:CDS | 30.0% | |
| TTTCTAACCTTGTTGAATCT+TGG | + | 57394:23117-23136 | None:intergenic | 30.0% | |
| ! | ACACTGTATGGTTTTTCTTT+AGG | - | 57394:22626-22645 | MS.gene47958:CDS | 30.0% |
| ! | AGTTAGCCACTTTATTAGTT+TGG | + | 57394:23549-23568 | None:intergenic | 30.0% |
| ! | CGTAGTATCATTATGCTTTT+TGG | - | 57394:21336-21355 | MS.gene47958:CDS | 30.0% |
| ! | TACATGTAGAACTTTTCCAT+TGG | + | 57394:24506-24525 | None:intergenic | 30.0% |
| ! | TCCAGTAACTAAATTGACTT+AGG | + | 57394:22562-22581 | None:intergenic | 30.0% |
| ! | TCTTTGGAAAGATGAAACAT+GGG | - | 57394:23426-23445 | MS.gene47958:CDS | 30.0% |
| ! | TTATCCTTTCTCTAGCTTAA+GGG | - | 57394:23396-23415 | MS.gene47958:CDS | 30.0% |
| !! | ATAATCATTTTTCTGCCTTC+AGG | - | 57394:22982-23001 | MS.gene47958:intron | 30.0% |
| !! | CAACAATAATTTGGTTCTTC+TGG | - | 57394:24132-24151 | MS.gene47958:intron | 30.0% |
| !! | TTATTCCTAGTGCTGTTTAT+TGG | - | 57394:22190-22209 | MS.gene47958:CDS | 30.0% |
| !!! | AAATATTCGGTTTTTAGTGC+CGG | + | 57394:21745-21764 | None:intergenic | 30.0% |
| !!! | AGTTGCTAATTTTGATTGTC+CGG | + | 57394:23843-23862 | None:intergenic | 30.0% |
| !!! | ATTCTTTTAACTTTCTGTCC+TGG | + | 57394:24065-24084 | None:intergenic | 30.0% |
| !!! | CTCAAACTTCTGTTTTGTTT+CGG | + | 57394:23191-23210 | None:intergenic | 30.0% |
| !!! | TTCTTTTAACTTTCTGTCCT+GGG | + | 57394:24064-24083 | None:intergenic | 30.0% |
| AACAACCACATCATTGTAAC+AGG | - | 57394:24417-24436 | MS.gene47958:CDS | 35.0% | |
| AACTGTCGTGTATTTGATGA+AGG | + | 57394:23604-23623 | None:intergenic | 35.0% | |
| AAGAACTCTACAAATTCCAC+TGG | - | 57394:24013-24032 | MS.gene47958:intron | 35.0% | |
| AAGGGTGATGTGAATGATAA+AGG | - | 57394:24356-24375 | MS.gene47958:CDS | 35.0% | |
| AAGTATCAGGTACATTAAGG+AGG | - | 57394:23270-23289 | MS.gene47958:intron | 35.0% | |
| ACTTGTTTGGATTCCAATTG+TGG | - | 57394:23147-23166 | MS.gene47958:intron | 35.0% | |
| AGTACACATGATGTGGATTT+GGG | - | 57394:23363-23382 | MS.gene47958:intron | 35.0% | |
| ATACATATGCTTGTATGGAG+GGG | - | 57394:23941-23960 | MS.gene47958:intron | 35.0% | |
| ATCTCACCAGGATAACATTA+AGG | - | 57394:22746-22765 | MS.gene47958:intron | 35.0% | |
| CAACCTCTTGATCAGATATA+TGG | + | 57394:23063-23082 | None:intergenic | 35.0% | |
| CACTGGAAATGATGTATGTA+GGG | - | 57394:24030-24049 | MS.gene47958:intron | 35.0% | |
| CATCTGCATCGTAACATATT+TGG | + | 57394:22677-22696 | None:intergenic | 35.0% | |
| CTAACCCAATCAAAGAGTAA+TGG | + | 57394:23481-23500 | None:intergenic | 35.0% | |
| GAACCAAATTATTGTTGGGT+CGG | + | 57394:24129-24148 | None:intergenic | 35.0% | |
| GATATCTTGCAAGTGTATGA+TGG | - | 57394:21822-21841 | MS.gene47958:intron | 35.0% | |
| GCAATGGATGATTACATACA+AGG | - | 57394:24389-24408 | MS.gene47958:CDS | 35.0% | |
| GCCTAAGTCAATTTAGTTAC+TGG | - | 57394:22558-22577 | MS.gene47958:CDS | 35.0% | |
| GCTATTGTCATAAGCTATCT+TGG | - | 57394:21606-21625 | MS.gene47958:CDS | 35.0% | |
| GGCAAATACATATGCTTGTA+TGG | - | 57394:23936-23955 | MS.gene47958:intron | 35.0% | |
| GTCCTAAAGATAGACTGATA+GGG | - | 57394:23641-23660 | MS.gene47958:CDS | 35.0% | |
| GTGTATTTGATGAAGGAGAA+AGG | + | 57394:23597-23616 | None:intergenic | 35.0% | |
| GTGTGTTAATCATGAAGATG+AGG | - | 57394:22598-22617 | MS.gene47958:CDS | 35.0% | |
| TCCTAAAGATAGACTGATAG+GGG | - | 57394:23642-23661 | MS.gene47958:CDS | 35.0% | |
| TGGATTCCAATTGTGGAAAA+GGG | - | 57394:23154-23173 | MS.gene47958:intron | 35.0% | |
| TGTAACAGGTTAATACTTCC+AGG | - | 57394:24431-24450 | MS.gene47958:CDS | 35.0% | |
| TGTATGTAATCATCCATTGC+AGG | + | 57394:24389-24408 | None:intergenic | 35.0% | |
| TGTTACAATGATGTGGTTGT+TGG | + | 57394:24418-24437 | None:intergenic | 35.0% | |
| TTAATACTTCCAGGAGTTGA+TGG | - | 57394:24440-24459 | MS.gene47958:CDS | 35.0% | |
| TTAATGTACCTGATACTTGC+CGG | + | 57394:23268-23287 | None:intergenic | 35.0% | |
| TTGGATTCCAATTGTGGAAA+AGG | - | 57394:23153-23172 | MS.gene47958:intron | 35.0% | |
| TTGGTAGAACCATCAAACAA+TGG | + | 57394:22810-22829 | None:intergenic | 35.0% | |
| TTTGATTGTCCGGTCTAAAT+CGG | + | 57394:23833-23852 | None:intergenic | 35.0% | |
| ! | AAATTTTACACAGGGAAAGC+AGG | - | 57394:21392-21411 | MS.gene47958:CDS | 35.0% |
| ! | CTATCAGTCTATCTTTAGGA+CGG | + | 57394:23642-23661 | None:intergenic | 35.0% |
| ! | CTCTTTGGAAAGATGAAACA+TGG | - | 57394:23425-23444 | MS.gene47958:CDS | 35.0% |
| ! | CTTATCCTTTCTCTAGCTTA+AGG | - | 57394:23395-23414 | MS.gene47958:CDS | 35.0% |
| ! | CTTTGGAAAGATGAAACATG+GGG | - | 57394:23427-23446 | MS.gene47958:CDS | 35.0% |
| ! | GCTCAGATTTTCGTCATATA+TGG | + | 57394:24096-24115 | None:intergenic | 35.0% |
| ! | TTTAAAGTGCCTTGATGAGT+TGG | - | 57394:24325-24344 | MS.gene47958:intron | 35.0% |
| !! | AAGATATTTGTTGTTGGTGC+AGG | + | 57394:22311-22330 | None:intergenic | 35.0% |
| !! | TAATTTGGTTCTTCTGGGTT+AGG | - | 57394:24138-24157 | MS.gene47958:intron | 35.0% |
| !! | TGCTAAAATATAGCGGATAG+CGG | - | 57394:22512-22531 | MS.gene47958:CDS | 35.0% |
| AACAGCACTAGGAATAAGAG+TGG | + | 57394:22187-22206 | None:intergenic | 40.0% | |
| AAGATTGTATGTGCTGAGTG+TGG | - | 57394:24476-24495 | MS.gene47958:CDS | 40.0% | |
| ACACATACCTGAATGATGTC+AGG | + | 57394:21299-21318 | None:intergenic | 40.0% | |
| ACATCATGTGTACTGCATTC+AGG | + | 57394:23357-23376 | None:intergenic | 40.0% | |
| ACCTAAATGTTGACGACAGA+TGG | + | 57394:22477-22496 | None:intergenic | 40.0% | |
| AGCCAATGATGCCGAAAATA+TGG | + | 57394:22245-22264 | None:intergenic | 40.0% | |
| AGTTTATGACCCTTCACTTC+TGG | - | 57394:23240-23259 | MS.gene47958:CDS | 40.0% | |
| ATCGTCCAATAAACAGCACT+AGG | + | 57394:22198-22217 | None:intergenic | 40.0% | |
| CACATACCTGAATGATGTCA+GGG | + | 57394:21298-21317 | None:intergenic | 40.0% | |
| CAGTACACATGATGTGGATT+TGG | - | 57394:23362-23381 | MS.gene47958:intron | 40.0% | |
| CATGTAATTCCCATGGAATC+TGG | + | 57394:23717-23736 | None:intergenic | 40.0% | |
| CCACCATATATCTGATCAAG+AGG | - | 57394:23057-23076 | MS.gene47958:intron | 40.0% | |
| CCACTGGAAATGATGTATGT+AGG | - | 57394:24029-24048 | MS.gene47958:intron | 40.0% | |
| CCTACATACATCATTTCCAG+TGG | + | 57394:24032-24051 | None:intergenic | 40.0% | |
| CCTCTTGATCAGATATATGG+TGG | + | 57394:23060-23079 | None:intergenic | 40.0% | |
| CGTCCTAAAGATAGACTGAT+AGG | - | 57394:23640-23659 | MS.gene47958:CDS | 40.0% | |
| CTTGATCAGATATATGGTGG+AGG | + | 57394:23057-23076 | None:intergenic | 40.0% | |
| GAACCATCAAACAATGGCAA+CGG | + | 57394:22804-22823 | None:intergenic | 40.0% | |
| GACATCAACAACAGAGACAT+GGG | - | 57394:22391-22410 | MS.gene47958:CDS | 40.0% | |
| GATCACTGCTATCAAAGCTT+AGG | + | 57394:24244-24263 | None:intergenic | 40.0% | |
| GATGAGGAAGAAACACTGTA+TGG | - | 57394:22614-22633 | MS.gene47958:CDS | 40.0% | |
| GCAATCAGTAACATCCAACA+TGG | + | 57394:22097-22116 | None:intergenic | 40.0% | |
| GCCAATGATGCCGAAAATAT+GGG | + | 57394:22244-22263 | None:intergenic | 40.0% | |
| GGCAAGTATCAGGTACATTA+AGG | - | 57394:23267-23286 | MS.gene47958:intron | 40.0% | |
| GGTTGGGCTATAATAAGTCA+AGG | - | 57394:24266-24285 | MS.gene47958:intron | 40.0% | |
| GTACACATGATGTGGATTTG+GGG | - | 57394:23364-23383 | MS.gene47958:intron | 40.0% | |
| GTCAAATAAGTCAGACTCGT+TGG | + | 57394:21445-21464 | None:intergenic | 40.0% | |
| TCAGCACATACAATCTTGTC+TGG | + | 57394:24473-24492 | None:intergenic | 40.0% | |
| TCCCCTATCAGTCTATCTTT+AGG | + | 57394:23646-23665 | None:intergenic | 40.0% | |
| TGAATGCAGTACACATGATG+TGG | - | 57394:23356-23375 | MS.gene47958:intron | 40.0% | |
| TGACATCAACAACAGAGACA+TGG | - | 57394:22390-22409 | MS.gene47958:CDS | 40.0% | |
| TGATAGCAGTGATCTTGGTT+GGG | - | 57394:24250-24269 | MS.gene47958:intron | 40.0% | |
| TGGTTCACAGCTTCGAATTT+AGG | + | 57394:22063-22082 | None:intergenic | 40.0% | |
| TTCTATGCTAACCCTTTGCT+TGG | + | 57394:22829-22848 | None:intergenic | 40.0% | |
| TTCTTCAATTGGAGCATGAG+TGG | + | 57394:21210-21229 | None:intergenic | 40.0% | |
| ! | AAAAGCTTTGATTCGCTGCA+AGG | - | 57394:22773-22792 | MS.gene47958:intron | 40.0% |
| ! | AGCTTTGATAGCAGTGATCT+TGG | - | 57394:24245-24264 | MS.gene47958:intron | 40.0% |
| ! | ATGCAACCGATTTAGCAAGA+CGG | + | 57394:21993-22012 | None:intergenic | 40.0% |
| ! | CACAAGTGCTGCAAAATCAA+TGG | - | 57394:23989-24008 | MS.gene47958:intron | 40.0% |
| ! | GCATGTGCATCCCATATTTT+CGG | - | 57394:22231-22250 | MS.gene47958:CDS | 40.0% |
| ! | GTTTTCGGCATCAGATGATA+CGG | - | 57394:21163-21182 | MS.gene47958:CDS | 40.0% |
| ! | TAAAGGAGTTTTGCCTGCAA+TGG | - | 57394:24373-24392 | MS.gene47958:CDS | 40.0% |
| ! | TCATGGTCAATGTACTGATC+AGG | + | 57394:22141-22160 | None:intergenic | 40.0% |
| ! | TCCCATATTTTCGGCATCAT+TGG | - | 57394:22240-22259 | MS.gene47958:CDS | 40.0% |
| ! | TGATGGTTCTACCAAGCAAA+GGG | - | 57394:22815-22834 | MS.gene47958:intron | 40.0% |
| ! | TGTAGAACTTTTCCATTGGC+TGG | + | 57394:24502-24521 | None:intergenic | 40.0% |
| ! | TTGATAGCAGTGATCTTGGT+TGG | - | 57394:24249-24268 | MS.gene47958:intron | 40.0% |
| ! | TTGATGGTTCTACCAAGCAA+AGG | - | 57394:22814-22833 | MS.gene47958:intron | 40.0% |
| !! | GTGCTGTTTATTGGACGATT+AGG | - | 57394:22199-22218 | MS.gene47958:CDS | 40.0% |
| !! | TATTTTCGGCATCATTGGCT+TGG | - | 57394:22245-22264 | MS.gene47958:CDS | 40.0% |
| !! | TTGGACGATTAGGAGTATTG+TGG | - | 57394:22209-22228 | MS.gene47958:CDS | 40.0% |
| !!! | ATTTTCGGCATCATTGGCTT+GGG | - | 57394:22246-22265 | MS.gene47958:CDS | 40.0% |
| !!! | TTTTGGGATCCAGATTCCAT+GGG | - | 57394:23705-23724 | MS.gene47958:CDS | 40.0% |
| AAAGCCTATGCTTGTGGTGT+TGG | - | 57394:23309-23328 | MS.gene47958:intron | 45.0% | |
| AACATGGGGACTTGCACTAT+TGG | - | 57394:23441-23460 | MS.gene47958:CDS | 45.0% | |
| AAGCTATTCATGGGATGCCA+AGG | - | 57394:21894-21913 | MS.gene47958:intron | 45.0% | |
| AATCGCGCCAAGATTCAACA+AGG | - | 57394:23107-23126 | MS.gene47958:intron | 45.0% | |
| ACACCTCAATGCTAACCTGA+AGG | + | 57394:23000-23019 | None:intergenic | 45.0% | |
| AGCTGTGAACCATCTTCTCA+AGG | - | 57394:22071-22090 | MS.gene47958:intron | 45.0% | |
| AGGCACAGTAAGAATGACAC+AGG | - | 57394:24286-24305 | MS.gene47958:intron | 45.0% | |
| ATGGAGGGGATGATATGGAA+TGG | - | 57394:23955-23974 | MS.gene47958:intron | 45.0% | |
| CAACACAAAGCCTATGCTTG+TGG | - | 57394:23303-23322 | MS.gene47958:intron | 45.0% | |
| CACCAACCGTCTTGCTAAAT+CGG | - | 57394:21984-22003 | MS.gene47958:intron | 45.0% | |
| CAGAAGCTAGACAGCATGAA+TGG | - | 57394:22431-22450 | MS.gene47958:CDS | 45.0% | |
| CATCTGATGCCGAAAACATG+TGG | + | 57394:21160-21179 | None:intergenic | 45.0% | |
| CCTGGTGAGATGTCTCAAAA+AGG | + | 57394:22737-22756 | None:intergenic | 45.0% | |
| CTTGTATGGAGGGGATGATA+TGG | - | 57394:23950-23969 | MS.gene47958:intron | 45.0% | |
| GACTGCAATCAATGATGCCA+TGG | - | 57394:23212-23231 | MS.gene47958:CDS | 45.0% | |
| GATCCGTTGCCATTGTTTGA+TGG | - | 57394:22798-22817 | MS.gene47958:intron | 45.0% | |
| GCATGCTAATGCATGGAGAT+GGG | + | 57394:21521-21540 | None:intergenic | 45.0% | |
| GCCATCTGTCGTCAACATTT+AGG | - | 57394:22473-22492 | MS.gene47958:CDS | 45.0% | |
| GGAATTGTTCCATCAACTCC+TGG | + | 57394:24452-24471 | None:intergenic | 45.0% | |
| GGCACAGTAAGAATGACACA+GGG | - | 57394:24287-24306 | MS.gene47958:intron | 45.0% | |
| GGGATGATATGGAATGGATC+AGG | - | 57394:23961-23980 | MS.gene47958:intron | 45.0% | |
| GGGTCATAAACTGAGTACCA+TGG | + | 57394:23232-23251 | None:intergenic | 45.0% | |
| GTAAGAATGACACAGGGCAA+AGG | - | 57394:24293-24312 | MS.gene47958:intron | 45.0% | |
| TATGTAGGGAAAAGCAACCC+AGG | - | 57394:24044-24063 | MS.gene47958:intron | 45.0% | |
| TCAGGTACATTAAGGAGGTG+TGG | - | 57394:23275-23294 | MS.gene47958:intron | 45.0% | |
| TCCAAGTATTCCTATGGCTG+TGG | + | 57394:21866-21885 | None:intergenic | 45.0% | |
| TCCACTCATCCAACTCATCA+AGG | + | 57394:24337-24356 | None:intergenic | 45.0% | |
| TCCTCCCTTAAGCTAGAGAA+AGG | + | 57394:23403-23422 | None:intergenic | 45.0% | |
| TCGCCGACCCAACAATAATT+TGG | - | 57394:24123-24142 | MS.gene47958:intron | 45.0% | |
| TCTCATCCCTGACATCATTC+AGG | - | 57394:21289-21308 | MS.gene47958:CDS | 45.0% | |
| TGCATGCTAATGCATGGAGA+TGG | + | 57394:21522-21541 | None:intergenic | 45.0% | |
| TGCTAATGCTATCACCACCT+TGG | + | 57394:21914-21933 | None:intergenic | 45.0% | |
| ! | AACCGATTTAGCAAGACGGT+TGG | + | 57394:21989-22008 | None:intergenic | 45.0% |
| ! | AAGGCTCCCTTTTCCACAAT+TGG | + | 57394:23163-23182 | None:intergenic | 45.0% |
| ! | AGCTATGCGCCACATGTTTT+CGG | - | 57394:21148-21167 | MS.gene47958:CDS | 45.0% |
| ! | GATGAGTTGGATGAGTGGAA+GGG | - | 57394:24338-24357 | MS.gene47958:intron | 45.0% |
| ! | GTCTAGCTTCTGAGTCAAAC+TGG | + | 57394:22423-22442 | None:intergenic | 45.0% |
| ! | TCAACGTTTCAGGTGCTTCA+TGG | + | 57394:22158-22177 | None:intergenic | 45.0% |
| ! | TCATTGTTTCAGGTAACGGC+AGG | - | 57394:23915-23934 | MS.gene47958:intron | 45.0% |
| ! | TCCTTTCTCTAGCTTAAGGG+AGG | - | 57394:23399-23418 | MS.gene47958:CDS | 45.0% |
| ! | TCTTGCAAGTGTATGATGGG+TGG | - | 57394:21826-21845 | MS.gene47958:intron | 45.0% |
| ! | TGATGAGTTGGATGAGTGGA+AGG | - | 57394:24337-24356 | MS.gene47958:intron | 45.0% |
| !! | AGATGGCGAGCTGATTTTGA+AGG | + | 57394:22460-22479 | None:intergenic | 45.0% |
| !! | AGGTTAGCATTGAGGTGTTG+AGG | - | 57394:23002-23021 | MS.gene47958:intron | 45.0% |
| !! | AGTCTATCTTTAGGACGGTG+AGG | + | 57394:23637-23656 | None:intergenic | 45.0% |
| !! | CTTGCAAGTGTATGATGGGT+GGG | - | 57394:21827-21846 | MS.gene47958:intron | 45.0% |
| !! | GGTGCAAATGGGTGTCATTA+AGG | - | 57394:21413-21432 | MS.gene47958:CDS | 45.0% |
| !! | TTGCAAGTGTATGATGGGTG+GGG | - | 57394:21828-21847 | MS.gene47958:intron | 45.0% |
| !!! | CCTTTTTGAGACATCTCACC+AGG | - | 57394:22734-22753 | MS.gene47958:intron | 45.0% |
| !!! | CTGTTTTGTTTCGGTCCACA+AGG | + | 57394:23182-23201 | None:intergenic | 45.0% |
| !!! | CTTTTGGGATCCAGATTCCA+TGG | - | 57394:23704-23723 | MS.gene47958:CDS | 45.0% |
| AAGCCAGAATTCCCCTAGGT+TGG | + | 57394:21947-21966 | None:intergenic | 50.0% | |
| ACAGGGAAAGCAGGTGCAAA+TGG | - | 57394:21401-21420 | MS.gene47958:CDS | 50.0% | |
| AGCATTTGCAGCCAACCTAG+GGG | - | 57394:21933-21952 | MS.gene47958:intron | 50.0% | |
| CAGCATTTGCAGCCAACCTA+GGG | - | 57394:21932-21951 | MS.gene47958:intron | 50.0% | |
| CAGGGAAAGCAGGTGCAAAT+GGG | - | 57394:21402-21421 | MS.gene47958:CDS | 50.0% | |
| CCATCTTCTCAAGGCCATGT+TGG | - | 57394:22080-22099 | MS.gene47958:intron | 50.0% | |
| CGATTTAGCAAGACGGTTGG+TGG | + | 57394:21986-22005 | None:intergenic | 50.0% | |
| CTACAAGCCAGAATTCCCCT+AGG | + | 57394:21951-21970 | None:intergenic | 50.0% | |
| CTATTCATGGGATGCCAAGG+TGG | - | 57394:21897-21916 | MS.gene47958:intron | 50.0% | |
| GATGTGGATTTGGGGAAGCA+TGG | - | 57394:23372-23391 | MS.gene47958:intron | 50.0% | |
| GATTGTCCGGTCTAAATCGG+TGG | + | 57394:23830-23849 | None:intergenic | 50.0% | |
| GCCACAGCCATAGGAATACT+TGG | - | 57394:21862-21881 | MS.gene47958:intron | 50.0% | |
| GCTAATGCATGGAGATGGGA+GGG | + | 57394:21517-21536 | None:intergenic | 50.0% | |
| GCTTAAGGGAGGAAGCTCTT+TGG | - | 57394:23410-23429 | MS.gene47958:CDS | 50.0% | |
| GGATCCAACACCACAAGCAT+AGG | + | 57394:23316-23335 | None:intergenic | 50.0% | |
| GTGGAAGCAGTCAACGTTTC+AGG | + | 57394:22168-22187 | None:intergenic | 50.0% | |
| TGCGTCACGCAATTACTGCA+TGG | - | 57394:23862-23881 | MS.gene47958:intron | 50.0% | |
| TGCTAATGCATGGAGATGGG+AGG | + | 57394:21518-21537 | None:intergenic | 50.0% | |
| TTGTGGAAAAGGGAGCCTTG+TGG | - | 57394:23164-23183 | MS.gene47958:intron | 50.0% | |
| ! | CCAACATGGCCTTGAGAAGA+TGG | + | 57394:22083-22102 | None:intergenic | 50.0% |
| ! | CTGCCTTCAGGTTAGCATTG+AGG | - | 57394:22994-23013 | MS.gene47958:intron | 50.0% |
| ! | CTTGTGGTGTTGGATCCACA+GGG | - | 57394:23319-23338 | MS.gene47958:intron | 50.0% |
| ! | GCCTTGATGAGTTGGATGAG+TGG | - | 57394:24333-24352 | MS.gene47958:intron | 50.0% |
| ! | GCTCTAGATTGGTTCTTCCG+TGG | + | 57394:21131-21150 | None:intergenic | 50.0% |
| ! | GGGTTAGGCTTGAAAGCATG+TGG | - | 57394:24153-24172 | MS.gene47958:CDS | 50.0% |
| ! | TTGTGGTGTTGGATCCACAG+GGG | - | 57394:23320-23339 | MS.gene47958:intron | 50.0% |
| !! | GCATCATTGGCTTGGGTCAA+GGG | - | 57394:22253-22272 | MS.gene47958:CDS | 50.0% |
| !! | TCTTGGCCACCGATTTAGAC+CGG | - | 57394:23821-23840 | MS.gene47958:intron | 50.0% |
| !! | TGCAAGTGTATGATGGGTGG+GGG | - | 57394:21829-21848 | MS.gene47958:intron | 50.0% |
| !! | TGTGGCGCATAGCTCTAGAT+TGG | + | 57394:21142-21161 | None:intergenic | 50.0% |
| AGGTTCACAACCTTCCCCTG+TGG | + | 57394:23337-23356 | None:intergenic | 55.0% | |
| CAATTGGAGCATGAGTGGCG+CGG | + | 57394:21205-21224 | None:intergenic | 55.0% | |
| CAGCCAACCTAGGGGAATTC+TGG | - | 57394:21941-21960 | MS.gene47958:intron | 55.0% | |
| CAGGGATGAGAGAAGCTGCA+TGG | + | 57394:21280-21299 | None:intergenic | 55.0% | |
| GATGCTCATGCCACAGCCAT+AGG | - | 57394:21853-21872 | MS.gene47958:intron | 55.0% | |
| GCAGCATTTGCAGCCAACCT+AGG | - | 57394:21931-21950 | MS.gene47958:intron | 55.0% | |
| ! | GCTTGTGGTGTTGGATCCAC+AGG | - | 57394:23318-23337 | MS.gene47958:intron | 55.0% |
| !! | GGCATCATTGGCTTGGGTCA+AGG | - | 57394:22252-22271 | MS.gene47958:CDS | 55.0% |
| !! | TGACCCTTCACTTCTGGAGC+CGG | - | 57394:23246-23265 | MS.gene47958:CDS | 55.0% |
| !! | TTCTGGAGCCGGCAAGTATC+AGG | - | 57394:23257-23276 | MS.gene47958:intron | 55.0% |
| !! | TTGCCGGCTCCAGAAGTGAA+GGG | + | 57394:23252-23271 | None:intergenic | 55.0% |
| TGCTGAGTGTGGCCAGCCAA+TGG | - | 57394:24487-24506 | MS.gene47958:CDS | 60.0% | |
| ! | GGTGTTGGATCCACAGGGGA+AGG | - | 57394:23324-23343 | MS.gene47958:intron | 60.0% |
| !! | CTTGCCGGCTCCAGAAGTGA+AGG | + | 57394:23253-23272 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57394 | gene | 21116 | 24544 | 21116 | ID=MS.gene47958 |
| 57394 | mRNA | 21116 | 24544 | 21116 | ID=MS.gene47958.t1;Parent=MS.gene47958 |
| 57394 | exon | 24350 | 24544 | 24350 | ID=MS.gene47958.t1.exon1;Parent=MS.gene47958.t1 |
| 57394 | CDS | 24350 | 24544 | 24350 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| 57394 | exon | 24151 | 24255 | 24151 | ID=MS.gene47958.t1.exon2;Parent=MS.gene47958.t1 |
| 57394 | CDS | 24151 | 24255 | 24151 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| 57394 | exon | 23386 | 23837 | 23386 | ID=MS.gene47958.t1.exon3;Parent=MS.gene47958.t1 |
| 57394 | CDS | 23386 | 23837 | 23386 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| 57394 | exon | 23166 | 23275 | 23166 | ID=MS.gene47958.t1.exon4;Parent=MS.gene47958.t1 |
| 57394 | CDS | 23166 | 23275 | 23166 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| 57394 | exon | 22824 | 22966 | 22824 | ID=MS.gene47958.t1.exon5;Parent=MS.gene47958.t1 |
| 57394 | CDS | 22824 | 22966 | 22824 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| 57394 | exon | 22165 | 22656 | 22165 | ID=MS.gene47958.t1.exon6;Parent=MS.gene47958.t1 |
| 57394 | CDS | 22165 | 22656 | 22165 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| 57394 | exon | 21116 | 21733 | 21116 | ID=MS.gene47958.t1.exon7;Parent=MS.gene47958.t1 |
| 57394 | CDS | 21116 | 21733 | 21116 | ID=cds.MS.gene47958.t1;Parent=MS.gene47958.t1 |
| Gene Sequence |
| Protein sequence |
