Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47960.t1 | XP_013446714.1 | 98 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.00E+00 | 1412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47960.t1 | Q9SS87 | 40.0 | 720 | 400 | 14 | 1 | 704 | 26 | 729 | 3.6e-150 | 533.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47960.t1 | A0A072TU76 | 98.0 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.0e+00 | 1412.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene47960 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene049696 | MS.gene47960 | 0.806858 | 6.71E-50 | -1.69E-46 |
| MS.gene049698 | MS.gene47960 | 0.840641 | 7.70E-58 | -1.69E-46 |
| MS.gene05017 | MS.gene47960 | 0.814693 | 1.35E-51 | -1.69E-46 |
| MS.gene054118 | MS.gene47960 | 0.839558 | 1.47E-57 | -1.69E-46 |
| MS.gene055371 | MS.gene47960 | 0.832858 | 7.44E-56 | -1.69E-46 |
| MS.gene058351 | MS.gene47960 | 0.816735 | 4.74E-52 | -1.69E-46 |
| MS.gene058823 | MS.gene47960 | 0.813258 | 2.80E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene47960 | 0.99686 | 2.86E-233 | -1.69E-46 |
| MS.gene058912 | MS.gene47960 | 0.996801 | 2.03E-232 | -1.69E-46 |
| MS.gene05894 | MS.gene47960 | 0.814675 | 1.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47960.t1 | MTR_8g089660 | 98.011 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.0 | 1444 |
| MS.gene47960.t1 | MTR_3g075450 | 52.991 | 702 | 316 | 8 | 7 | 704 | 15 | 706 | 0.0 | 745 |
| MS.gene47960.t1 | MTR_7g032660 | 43.723 | 693 | 375 | 11 | 20 | 704 | 26 | 711 | 0.0 | 570 |
| MS.gene47960.t1 | MTR_1g074950 | 32.521 | 698 | 402 | 20 | 17 | 703 | 23 | 662 | 1.70e-105 | 336 |
| MS.gene47960.t1 | MTR_1g074990 | 31.746 | 693 | 413 | 23 | 17 | 703 | 22 | 660 | 3.32e-100 | 322 |
| MS.gene47960.t1 | MTR_1g075095 | 31.124 | 694 | 418 | 23 | 17 | 703 | 22 | 662 | 3.14e-96 | 311 |
| MS.gene47960.t1 | MTR_1g075230 | 30.914 | 689 | 419 | 21 | 22 | 704 | 26 | 663 | 8.34e-95 | 308 |
| MS.gene47960.t1 | MTR_1g075030 | 30.836 | 694 | 420 | 23 | 17 | 703 | 22 | 662 | 3.05e-94 | 306 |
| MS.gene47960.t1 | MTR_1g040360 | 29.014 | 710 | 416 | 24 | 20 | 703 | 30 | 677 | 1.06e-77 | 263 |
| MS.gene47960.t1 | MTR_1g075170 | 25.301 | 664 | 369 | 25 | 88 | 704 | 84 | 667 | 3.09e-47 | 178 |
| MS.gene47960.t1 | MTR_1g075180 | 27.202 | 647 | 372 | 24 | 87 | 704 | 60 | 636 | 1.11e-46 | 176 |
| MS.gene47960.t1 | MTR_1g075153 | 25.645 | 620 | 396 | 19 | 101 | 704 | 93 | 663 | 3.26e-44 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47960.t1 | AT3G01680 | 39.973 | 728 | 389 | 14 | 1 | 704 | 26 | 729 | 0.0 | 540 |
| MS.gene47960.t1 | AT3G01670 | 37.260 | 730 | 401 | 14 | 5 | 704 | 120 | 822 | 2.49e-156 | 473 |
| MS.gene47960.t1 | AT3G01670 | 37.260 | 730 | 401 | 14 | 5 | 704 | 144 | 846 | 6.50e-156 | 473 |
| MS.gene47960.t1 | AT1G67790 | 27.273 | 704 | 454 | 20 | 13 | 700 | 3 | 664 | 2.79e-74 | 253 |
Find 174 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATAATTTGGTTCTTC+TGG | 0.161982 | 4.1:-11015087 | MS.gene47960:CDS |
| AGCCAATGATGCCGAAAATA+TGG | 0.210391 | 4.1:+11016977 | None:intergenic |
| TCATTATTTCTAGCATTATT+TGG | 0.215889 | 4.1:+11015005 | None:intergenic |
| TGGTTCACAGCTTCGAATTT+AGG | 0.226976 | 4.1:+11017159 | None:intergenic |
| GTGGAAGCAGTCAACGTTTC+AGG | 0.227141 | 4.1:+11017054 | None:intergenic |
| CAGCCAACCTAGGGGAATTC+TGG | 0.232894 | 4.1:-11017278 | MS.gene47960:CDS |
| TTATTCCTAGTGCTGTTTAT+TGG | 0.240892 | 4.1:-11017029 | MS.gene47960:CDS |
| CTAAATCAAGTTGATGATTT+AGG | 0.243441 | 4.1:-11017183 | MS.gene47960:CDS |
| CTTATCCTTTCTCTAGCTTA+AGG | 0.273091 | 4.1:-11015824 | MS.gene47960:CDS |
| AAAGTCAATATGAACTTGTT+TGG | 0.301575 | 4.1:-11016085 | MS.gene47960:CDS |
| TCGCCGACCCAACAATAATT+TGG | 0.306777 | 4.1:-11015096 | MS.gene47960:CDS |
| GCCATCTGTCGTCAACATTT+AGG | 0.310486 | 4.1:-11016746 | MS.gene47960:intron |
| TTGATCCATTACTCTTTGAT+TGG | 0.312322 | 4.1:-11015746 | MS.gene47960:CDS |
| AACAATAATTTGGTTCTTCT+GGG | 0.327056 | 4.1:-11015086 | MS.gene47960:CDS |
| GTGCTGTTTATTGGACGATT+AGG | 0.341924 | 4.1:-11017020 | MS.gene47960:CDS |
| AGTTTATGACCCTTCACTTC+TGG | 0.343500 | 4.1:-11015979 | MS.gene47960:CDS |
| GGTGCAAATGGGTGTCATTA+AGG | 0.345730 | 4.1:-11017806 | MS.gene47960:CDS |
| CACCAACCGTCTTGCTAAAT+CGG | 0.347696 | 4.1:-11017235 | MS.gene47960:CDS |
| CAACCTCTTGATCAGATATA+TGG | 0.348166 | 4.1:+11016159 | None:intergenic |
| TTCTGGAGCCGGCAAGTATC+AGG | 0.351408 | 4.1:-11015962 | MS.gene47960:CDS |
| CAGTACACATGATGTGGATT+TGG | 0.360665 | 4.1:-11015857 | MS.gene47960:CDS |
| TTATCCTTTCTCTAGCTTAA+GGG | 0.366997 | 4.1:-11015823 | MS.gene47960:CDS |
| TTTCTAACCTTGTTGAATCT+TGG | 0.368924 | 4.1:+11016105 | None:intergenic |
| AGTACACATGATGTGGATTT+GGG | 0.370269 | 4.1:-11015856 | MS.gene47960:CDS |
| TAATTTGGTTCTTCTGGGTT+AGG | 0.371529 | 4.1:-11015081 | MS.gene47960:CDS |
| GATCCGTTGCCATTGTTTGA+TGG | 0.373654 | 4.1:-11016421 | MS.gene47960:CDS |
| GCTTAAGGGAGGAAGCTCTT+TGG | 0.376320 | 4.1:-11015809 | MS.gene47960:CDS |
| GGCAAGTATCAGGTACATTA+AGG | 0.376593 | 4.1:-11015952 | MS.gene47960:CDS |
| TCTCATCCCTGACATCATTC+AGG | 0.378967 | 4.1:-11017930 | MS.gene47960:intron |
| TGTAACAGGTTAATACTTCC+AGG | 0.385524 | 4.1:-11014788 | MS.gene47960:CDS |
| ACATCAACATGTTCTTCAAT+TGG | 0.386844 | 4.1:+11018001 | None:intergenic |
| GAATGTTATCAAGCTATTCA+TGG | 0.387548 | 4.1:-11017335 | MS.gene47960:CDS |
| TTGATAGCAGTGATCTTGGT+TGG | 0.389293 | 4.1:-11014970 | MS.gene47960:CDS |
| TTGGATTCCAATTGTGGAAA+AGG | 0.390783 | 4.1:-11016066 | MS.gene47960:CDS |
| ATCTCACCAGGATAACATTA+AGG | 0.393914 | 4.1:-11016473 | MS.gene47960:CDS |
| TGATAGCAGTGATCTTGGTT+GGG | 0.396003 | 4.1:-11014969 | MS.gene47960:CDS |
| TTAATACTTCCAGGAGTTGA+TGG | 0.396920 | 4.1:-11014779 | MS.gene47960:CDS |
| AACAACCACATCATTGTAAC+AGG | 0.400553 | 4.1:-11014802 | MS.gene47960:CDS |
| TCAACGTTTCAGGTGCTTCA+TGG | 0.401328 | 4.1:+11017064 | None:intergenic |
| GTCTAGCTTCTGAGTCAAAC+TGG | 0.402501 | 4.1:+11016799 | None:intergenic |
| ACAGGGAAAGCAGGTGCAAA+TGG | 0.405892 | 4.1:-11017818 | MS.gene47960:intron |
| CCTGGTGAGATGTCTCAAAA+AGG | 0.408664 | 4.1:+11016485 | None:intergenic |
| TGATCCATTACTCTTTGATT+GGG | 0.417724 | 4.1:-11015745 | MS.gene47960:intron |
| AACATGGGGACTTGCACTAT+TGG | 0.418376 | 4.1:-11015778 | MS.gene47960:CDS |
| TTAATGTACCTGATACTTGC+CGG | 0.419081 | 4.1:+11015954 | None:intergenic |
| AGCTTTGATAGCAGTGATCT+TGG | 0.420787 | 4.1:-11014974 | MS.gene47960:CDS |
| ACATCATGTGTACTGCATTC+AGG | 0.422398 | 4.1:+11015865 | None:intergenic |
| GGCAAATACATATGCTTGTA+TGG | 0.423354 | 4.1:-11015283 | MS.gene47960:CDS |
| GGCATCATTGGCTTGGGTCA+AGG | 0.427388 | 4.1:-11016967 | MS.gene47960:CDS |
| CAGAAGAACCAAATTATTGT+TGG | 0.427439 | 4.1:+11015088 | None:intergenic |
| CTTGTATGGAGGGGATGATA+TGG | 0.427516 | 4.1:-11015269 | MS.gene47960:CDS |
| TTAGAACCTTAATGTTATCC+TGG | 0.432692 | 4.1:+11016467 | None:intergenic |
| CTGCCTTCAGGTTAGCATTG+AGG | 0.432974 | 4.1:-11016225 | MS.gene47960:intron |
| CCAACATGGCCTTGAGAAGA+TGG | 0.452960 | 4.1:+11017139 | None:intergenic |
| TTCTATGCTAACCCTTTGCT+TGG | 0.456050 | 4.1:+11016393 | None:intergenic |
| GCCACAGCCATAGGAATACT+TGG | 0.462169 | 4.1:-11017357 | MS.gene47960:CDS |
| TGGATTCCAATTGTGGAAAA+GGG | 0.462360 | 4.1:-11016065 | MS.gene47960:CDS |
| GGAATTGTTCCATCAACTCC+TGG | 0.465713 | 4.1:+11014770 | None:intergenic |
| CAGCATTTGCAGCCAACCTA+GGG | 0.467499 | 4.1:-11017287 | MS.gene47960:CDS |
| GCTTGTGGTGTTGGATCCAC+AGG | 0.469284 | 4.1:-11015901 | MS.gene47960:CDS |
| ACACATACCTGAATGATGTC+AGG | 0.469745 | 4.1:+11017923 | None:intergenic |
| TCATGGTCAATGTACTGATC+AGG | 0.470291 | 4.1:+11017081 | None:intergenic |
| CACTGGAAATGATGTATGTA+GGG | 0.475708 | 4.1:-11015189 | MS.gene47960:CDS |
| AGAAGAACCAAATTATTGTT+GGG | 0.477001 | 4.1:+11015089 | None:intergenic |
| AAGGGTGATGTGAATGATAA+AGG | 0.477561 | 4.1:-11014863 | MS.gene47960:CDS |
| TAACATTCCAAGTATTCCTA+TGG | 0.480889 | 4.1:+11017350 | None:intergenic |
| GATCACTGCTATCAAAGCTT+AGG | 0.481506 | 4.1:+11014978 | None:intergenic |
| TGTTACAATGATGTGGTTGT+TGG | 0.481648 | 4.1:+11014804 | None:intergenic |
| TCAGCACATACAATCTTGTC+TGG | 0.484584 | 4.1:+11014749 | None:intergenic |
| CGATTTAGCAAGACGGTTGG+TGG | 0.490770 | 4.1:+11017236 | None:intergenic |
| GCCAATGATGCCGAAAATAT+GGG | 0.491206 | 4.1:+11016978 | None:intergenic |
| CCACTGGAAATGATGTATGT+AGG | 0.492407 | 4.1:-11015190 | MS.gene47960:CDS |
| TGACCCTTCACTTCTGGAGC+CGG | 0.494397 | 4.1:-11015973 | MS.gene47960:CDS |
| GCATCATTGGCTTGGGTCAA+GGG | 0.496479 | 4.1:-11016966 | MS.gene47960:intron |
| GCAGCATTTGCAGCCAACCT+AGG | 0.498859 | 4.1:-11017288 | MS.gene47960:CDS |
| ACTTGTTTGGATTCCAATTG+TGG | 0.500335 | 4.1:-11016072 | MS.gene47960:CDS |
| ACCTAAATGTTGACGACAGA+TGG | 0.501887 | 4.1:+11016745 | None:intergenic |
| CACAAGTGCTGCAAAATCAA+TGG | 0.502401 | 4.1:-11015230 | MS.gene47960:CDS |
| CTCTTTGGAAAGATGAAACA+TGG | 0.504100 | 4.1:-11015794 | MS.gene47960:CDS |
| TGTATGTAATCATCCATTGC+AGG | 0.507632 | 4.1:+11014833 | None:intergenic |
| TGATGGTTCTACCAAGCAAA+GGG | 0.508257 | 4.1:-11016404 | MS.gene47960:intron |
| GGGATGATATGGAATGGATC+AGG | 0.513866 | 4.1:-11015258 | MS.gene47960:CDS |
| AAAGCCTATGCTTGTGGTGT+TGG | 0.519130 | 4.1:-11015910 | MS.gene47960:CDS |
| AATGTTATCAAGCTATTCAT+GGG | 0.520097 | 4.1:-11017334 | MS.gene47960:CDS |
| AAAAGCTTTGATTCGCTGCA+AGG | 0.522723 | 4.1:-11016446 | MS.gene47960:CDS |
| CAGAAGCTAGACAGCATGAA+TGG | 0.523616 | 4.1:-11016788 | MS.gene47960:CDS |
| CTAACCCAATCAAAGAGTAA+TGG | 0.523816 | 4.1:+11015741 | None:intergenic |
| GATATCTTGCAAGTGTATGA+TGG | 0.525160 | 4.1:-11017397 | MS.gene47960:CDS |
| CTTGCAAGTGTATGATGGGT+GGG | 0.527555 | 4.1:-11017392 | MS.gene47960:CDS |
| CAGGGAAAGCAGGTGCAAAT+GGG | 0.534533 | 4.1:-11017817 | MS.gene47960:CDS |
| TGTGGCGCATAGCTCTAGAT+TGG | 0.538177 | 4.1:+11018080 | None:intergenic |
| TCCACTCATCCAACTCATCA+AGG | 0.539782 | 4.1:+11014885 | None:intergenic |
| GATGCTCATGCCACAGCCAT+AGG | 0.540232 | 4.1:-11017366 | MS.gene47960:CDS |
| GGTGTTGGATCCACAGGGGA+AGG | 0.541944 | 4.1:-11015895 | MS.gene47960:CDS |
| CAACACAAAGCCTATGCTTG+TGG | 0.543460 | 4.1:-11015916 | MS.gene47960:CDS |
| TTCTTCAATTGGAGCATGAG+TGG | 0.548840 | 4.1:+11018012 | None:intergenic |
| GTCAAATAAGTCAGACTCGT+TGG | 0.549098 | 4.1:+11017777 | None:intergenic |
| AAGCCAGAATTCCCCTAGGT+TGG | 0.550403 | 4.1:+11017275 | None:intergenic |
| TCCTCCCTTAAGCTAGAGAA+AGG | 0.552077 | 4.1:+11015819 | None:intergenic |
| CCATCTTCTCAAGGCCATGT+TGG | 0.553276 | 4.1:-11017139 | MS.gene47960:CDS |
| CCACCATATATCTGATCAAG+AGG | 0.555144 | 4.1:-11016162 | MS.gene47960:CDS |
| AGGTTAGCATTGAGGTGTTG+AGG | 0.556064 | 4.1:-11016217 | MS.gene47960:CDS |
| AATACATATGCTTGTATGGA+GGG | 0.557127 | 4.1:-11015279 | MS.gene47960:CDS |
| TGCTGAGTGTGGCCAGCCAA+TGG | 0.557768 | 4.1:-11014732 | MS.gene47960:CDS |
| TCCAAGTATTCCTATGGCTG+TGG | 0.558646 | 4.1:+11017356 | None:intergenic |
| TGATGAGTTGGATGAGTGGA+AGG | 0.558717 | 4.1:-11014882 | MS.gene47960:CDS |
| ATGGAGGGGATGATATGGAA+TGG | 0.560454 | 4.1:-11015264 | MS.gene47960:CDS |
| GAACCAAATTATTGTTGGGT+CGG | 0.565403 | 4.1:+11015093 | None:intergenic |
| TTTAAAGTGCCTTGATGAGT+TGG | 0.567126 | 4.1:-11014894 | MS.gene47960:CDS |
| TCATTGTTTCAGGTAACGGC+AGG | 0.571139 | 4.1:-11015304 | MS.gene47960:intron |
| CCTACATACATCATTTCCAG+TGG | 0.574920 | 4.1:+11015190 | None:intergenic |
| GACTGCAATCAATGATGCCA+TGG | 0.581079 | 4.1:-11016007 | MS.gene47960:CDS |
| GATGTGGATTTGGGGAAGCA+TGG | 0.581300 | 4.1:-11015847 | MS.gene47960:CDS |
| GGATCCAACACCACAAGCAT+AGG | 0.581914 | 4.1:+11015906 | None:intergenic |
| TTGCAAGTGTATGATGGGTG+GGG | 0.583049 | 4.1:-11017391 | MS.gene47960:CDS |
| TTGGACGATTAGGAGTATTG+TGG | 0.585521 | 4.1:-11017010 | MS.gene47960:CDS |
| AGCTGTGAACCATCTTCTCA+AGG | 0.587074 | 4.1:-11017148 | MS.gene47960:CDS |
| GCAATGGATGATTACATACA+AGG | 0.587303 | 4.1:-11014830 | MS.gene47960:CDS |
| TTGATGGTTCTACCAAGCAA+AGG | 0.587353 | 4.1:-11016405 | MS.gene47960:CDS |
| CTTGCCGGCTCCAGAAGTGA+AGG | 0.593649 | 4.1:+11015969 | None:intergenic |
| TCTTGCAAGTGTATGATGGG+TGG | 0.595387 | 4.1:-11017393 | MS.gene47960:CDS |
| TGCAAGTGTATGATGGGTGG+GGG | 0.599102 | 4.1:-11017390 | MS.gene47960:CDS |
| AAGCTATTCATGGGATGCCA+AGG | 0.599229 | 4.1:-11017325 | MS.gene47960:CDS |
| AACCGATTTAGCAAGACGGT+TGG | 0.600581 | 4.1:+11017233 | None:intergenic |
| CACATACCTGAATGATGTCA+GGG | 0.601333 | 4.1:+11017924 | None:intergenic |
| GGGTTAGGCTTGAAAGCATG+TGG | 0.601692 | 4.1:-11015066 | MS.gene47960:CDS |
| TCCTTTCTCTAGCTTAAGGG+AGG | 0.602422 | 4.1:-11015820 | MS.gene47960:CDS |
| CTTGATCAGATATATGGTGG+AGG | 0.605091 | 4.1:+11016165 | None:intergenic |
| TGCTAATGCTATCACCACCT+TGG | 0.608163 | 4.1:+11017308 | None:intergenic |
| GACATCAACAACAGAGACAT+GGG | 0.608488 | 4.1:-11016828 | MS.gene47960:CDS |
| AATTAACAAAATTTCATGCG+AGG | 0.609758 | 4.1:-11017731 | MS.gene47960:intron |
| CCTCTTGATCAGATATATGG+TGG | 0.610021 | 4.1:+11016162 | None:intergenic |
| GCCTTGATGAGTTGGATGAG+TGG | 0.611429 | 4.1:-11014886 | MS.gene47960:CDS |
| ATACATATGCTTGTATGGAG+GGG | 0.612025 | 4.1:-11015278 | MS.gene47960:CDS |
| AACAGCACTAGGAATAAGAG+TGG | 0.612767 | 4.1:+11017035 | None:intergenic |
| ATCGTCCAATAAACAGCACT+AGG | 0.613869 | 4.1:+11017024 | None:intergenic |
| TGACATCAACAACAGAGACA+TGG | 0.615029 | 4.1:-11016829 | MS.gene47960:CDS |
| GCTCTAGATTGGTTCTTCCG+TGG | 0.618668 | 4.1:+11018091 | None:intergenic |
| ATATCTTGCAAGTGTATGAT+GGG | 0.620245 | 4.1:-11017396 | MS.gene47960:CDS |
| TCTTTGGAAAGATGAAACAT+GGG | 0.627324 | 4.1:-11015793 | MS.gene47960:CDS |
| AAGAACTCTACAAATTCCAC+TGG | 0.628463 | 4.1:-11015206 | MS.gene47960:CDS |
| AGGCACAGTAAGAATGACAC+AGG | 0.628719 | 4.1:-11014933 | MS.gene47960:CDS |
| CAGGGATGAGAGAAGCTGCA+TGG | 0.630283 | 4.1:+11017942 | None:intergenic |
| GAACCATCAAACAATGGCAA+CGG | 0.633219 | 4.1:+11016418 | None:intergenic |
| TCAGGTACATTAAGGAGGTG+TGG | 0.633877 | 4.1:-11015944 | MS.gene47960:CDS |
| CTACAAGCCAGAATTCCCCT+AGG | 0.640741 | 4.1:+11017271 | None:intergenic |
| ATTAACCTGTTACAATGATG+TGG | 0.642311 | 4.1:+11014797 | None:intergenic |
| CATCTGATGCCGAAAACATG+TGG | 0.643576 | 4.1:+11018062 | None:intergenic |
| GGTTGGGCTATAATAAGTCA+AGG | 0.646453 | 4.1:-11014953 | MS.gene47960:CDS |
| TGAATGCAGTACACATGATG+TGG | 0.648791 | 4.1:-11015863 | MS.gene47960:CDS |
| AGGTTCACAACCTTCCCCTG+TGG | 0.653743 | 4.1:+11015885 | None:intergenic |
| CAATTGGAGCATGAGTGGCG+CGG | 0.654595 | 4.1:+11018017 | None:intergenic |
| GTAAGAATGACACAGGGCAA+AGG | 0.655395 | 4.1:-11014926 | MS.gene47960:CDS |
| CTTGTGGTGTTGGATCCACA+GGG | 0.655675 | 4.1:-11015900 | MS.gene47960:CDS |
| ATTACAACAAAGCAAAACAG+TGG | 0.655934 | 4.1:-11015035 | MS.gene47960:CDS |
| TTGCCGGCTCCAGAAGTGAA+GGG | 0.656832 | 4.1:+11015970 | None:intergenic |
| AAATACATATGCTTGTATGG+AGG | 0.657822 | 4.1:-11015280 | MS.gene47960:CDS |
| CTATTCATGGGATGCCAAGG+TGG | 0.659627 | 4.1:-11017322 | MS.gene47960:CDS |
| TCTTGAACAACATTAAGTAG+AGG | 0.666397 | 4.1:+11017974 | None:intergenic |
| TATGTAGGGAAAAGCAACCC+AGG | 0.668054 | 4.1:-11015175 | MS.gene47960:CDS |
| AAGTATCAGGTACATTAAGG+AGG | 0.672143 | 4.1:-11015949 | MS.gene47960:CDS |
| GCAATCAGTAACATCCAACA+TGG | 0.677386 | 4.1:+11017125 | None:intergenic |
| TTGGTAGAACCATCAAACAA+TGG | 0.687980 | 4.1:+11016412 | None:intergenic |
| CTTTGGAAAGATGAAACATG+GGG | 0.692368 | 4.1:-11015792 | MS.gene47960:CDS |
| GGGTCATAAACTGAGTACCA+TGG | 0.693180 | 4.1:+11015990 | None:intergenic |
| ATGCAACCGATTTAGCAAGA+CGG | 0.703963 | 4.1:+11017229 | None:intergenic |
| TTGTGGAAAAGGGAGCCTTG+TGG | 0.709783 | 4.1:-11016055 | MS.gene47960:CDS |
| AAGATTGTATGTGCTGAGTG+TGG | 0.709803 | 4.1:-11014743 | MS.gene47960:CDS |
| AATCGCGCCAAGATTCAACA+AGG | 0.710479 | 4.1:-11016112 | MS.gene47960:CDS |
| AGCATTTGCAGCCAACCTAG+GGG | 0.713294 | 4.1:-11017286 | MS.gene47960:CDS |
| GATGAGTTGGATGAGTGGAA+GGG | 0.734062 | 4.1:-11014881 | MS.gene47960:CDS |
| GGCACAGTAAGAATGACACA+GGG | 0.746683 | 4.1:-11014932 | MS.gene47960:CDS |
| GTACACATGATGTGGATTTG+GGG | 0.748134 | 4.1:-11015855 | MS.gene47960:CDS |
| TTGTGGTGTTGGATCCACAG+GGG | 0.840678 | 4.1:-11015899 | MS.gene47960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGATCAAAAGTTAAA+TGG | + | chr4.1:11017251-11017270 | None:intergenic | 15.0% |
| !!! | AGTATAATAATTGTTCTTTT+GGG | - | chr4.1:11017270-11017289 | MS.gene47960:CDS | 15.0% |
| !!! | TAGTATAATAATTGTTCTTT+TGG | - | chr4.1:11017269-11017288 | MS.gene47960:CDS | 15.0% |
| !! | ATATAGAGAATGAAAAACAT+AGG | + | chr4.1:11017086-11017105 | None:intergenic | 20.0% |
| !! | ATCTTATTATTCATTGTTTC+AGG | - | chr4.1:11017486-11017505 | MS.gene47960:intron | 20.0% |
| !! | GAATAATAAGATCAAAAGAA+CGG | + | chr4.1:11017478-11017497 | None:intergenic | 20.0% |
| !! | TTATAACAGACTTTATGAAT+CGG | + | chr4.1:11017375-11017394 | None:intergenic | 20.0% |
| !!! | AACATTAAGATATTTGTTGT+TGG | + | chr4.1:11015898-11015917 | None:intergenic | 20.0% |
| !!! | ATCTAGTTCTAGAAAATATT+CGG | + | chr4.1:11015339-11015358 | None:intergenic | 20.0% |
| !!! | TCATTATTTCTAGCATTATT+TGG | + | chr4.1:11017798-11017817 | None:intergenic | 20.0% |
| !!! | TTGTTTTGAAATTTTACACA+GGG | - | chr4.1:11014965-11014984 | MS.gene47960:CDS | 20.0% |
| ! | AATGTTATCAAGCTATTCAT+GGG | - | chr4.1:11015466-11015485 | MS.gene47960:intron | 25.0% |
| ! | AATTAACAAAATTTCATGCG+AGG | - | chr4.1:11015069-11015088 | MS.gene47960:CDS | 25.0% |
| ! | AGAAGAACCAAATTATTGTT+GGG | + | chr4.1:11017714-11017733 | None:intergenic | 25.0% |
| ! | ATTTAAACATGTAATTCCCA+TGG | + | chr4.1:11017305-11017324 | None:intergenic | 25.0% |
| ! | CAATATTGTCACTCATATTT+GGG | + | chr4.1:11015277-11015296 | None:intergenic | 25.0% |
| ! | CTTTGATTGCTAAAATATAG+CGG | - | chr4.1:11016086-11016105 | MS.gene47960:CDS | 25.0% |
| ! | GTTAATTAACTATGTGTTTG+TGG | - | chr4.1:11014942-11014961 | MS.gene47960:CDS | 25.0% |
| ! | TCAATATTGTCACTCATATT+TGG | + | chr4.1:11015278-11015297 | None:intergenic | 25.0% |
| ! | TCTGTTATAAACAATCTTCT+TGG | - | chr4.1:11017385-11017404 | MS.gene47960:CDS | 25.0% |
| !! | AAAGTCAATATGAACTTGTT+TGG | - | chr4.1:11016715-11016734 | MS.gene47960:intron | 25.0% |
| !! | TTATTCATTGTTTCAGGTAA+CGG | - | chr4.1:11017492-11017511 | MS.gene47960:intron | 25.0% |
| !!! | AACAATAATTTGGTTCTTCT+GGG | - | chr4.1:11017714-11017733 | MS.gene47960:intron | 25.0% |
| !!! | CTAAATCAAGTTGATGATTT+AGG | - | chr4.1:11015617-11015636 | MS.gene47960:intron | 25.0% |
| !!! | GTTGTTTTGAAATTTTACAC+AGG | - | chr4.1:11014964-11014983 | MS.gene47960:CDS | 25.0% |
| !!! | TGTTTTGCTTTGTTGTAATT+TGG | + | chr4.1:11017764-11017783 | None:intergenic | 25.0% |
| AAATACATATGCTTGTATGG+AGG | - | chr4.1:11017520-11017539 | MS.gene47960:intron | 30.0% | |
| AATACATATGCTTGTATGGA+GGG | - | chr4.1:11017521-11017540 | MS.gene47960:intron | 30.0% | |
| ACATCAACATGTTCTTCAAT+TGG | + | chr4.1:11014802-11014821 | None:intergenic | 30.0% | |
| ATATCTTGCAAGTGTATGAT+GGG | - | chr4.1:11015404-11015423 | MS.gene47960:intron | 30.0% | |
| ATTAACCTGTTACAATGATG+TGG | + | chr4.1:11018006-11018025 | None:intergenic | 30.0% | |
| ATTACAACAAAGCAAAACAG+TGG | - | chr4.1:11017765-11017784 | MS.gene47960:CDS | 30.0% | |
| CAGAAGAACCAAATTATTGT+TGG | + | chr4.1:11017715-11017734 | None:intergenic | 30.0% | |
| CGTCAACATTTAGGTAATTA+AGG | - | chr4.1:11016063-11016082 | MS.gene47960:CDS | 30.0% | |
| GAATGTTATCAAGCTATTCA+TGG | - | chr4.1:11015465-11015484 | MS.gene47960:intron | 30.0% | |
| GAGCTTGTAGAAACAATTTA+CGG | + | chr4.1:11015253-11015272 | None:intergenic | 30.0% | |
| GCATAACCAAACTAATAAAG+TGG | - | chr4.1:11017121-11017140 | MS.gene47960:CDS | 30.0% | |
| TAAATATGCATGCTAATGCA+TGG | + | chr4.1:11015109-11015128 | None:intergenic | 30.0% | |
| TAACATTCCAAGTATTCCTA+TGG | + | chr4.1:11015453-11015472 | None:intergenic | 30.0% | |
| TCTTGAACAACATTAAGTAG+AGG | + | chr4.1:11014829-11014848 | None:intergenic | 30.0% | |
| TGATCCATTACTCTTTGATT+GGG | - | chr4.1:11017055-11017074 | MS.gene47960:CDS | 30.0% | |
| TGTTACAAAAAATGCATTGC+CGG | - | chr4.1:11015304-11015323 | MS.gene47960:intron | 30.0% | |
| TTAGAACCTTAATGTTATCC+TGG | + | chr4.1:11016336-11016355 | None:intergenic | 30.0% | |
| TTGATCCATTACTCTTTGAT+TGG | - | chr4.1:11017054-11017073 | MS.gene47960:CDS | 30.0% | |
| TTTCTAACCTTGTTGAATCT+TGG | + | chr4.1:11016698-11016717 | None:intergenic | 30.0% | |
| ! | ACACTGTATGGTTTTTCTTT+AGG | - | chr4.1:11016207-11016226 | MS.gene47960:CDS | 30.0% |
| ! | AGTTAGCCACTTTATTAGTT+TGG | + | chr4.1:11017130-11017149 | None:intergenic | 30.0% |
| ! | CGTAGTATCATTATGCTTTT+TGG | - | chr4.1:11014917-11014936 | MS.gene47960:CDS | 30.0% |
| ! | TACATGTAGAACTTTTCCAT+TGG | + | chr4.1:11018087-11018106 | None:intergenic | 30.0% |
| ! | TCCAGTAACTAAATTGACTT+AGG | + | chr4.1:11016143-11016162 | None:intergenic | 30.0% |
| ! | TCTTTGGAAAGATGAAACAT+GGG | - | chr4.1:11017007-11017026 | MS.gene47960:CDS | 30.0% |
| ! | TTATCCTTTCTCTAGCTTAA+GGG | - | chr4.1:11016977-11016996 | MS.gene47960:CDS | 30.0% |
| !! | ATAATCATTTTTCTGCCTTC+AGG | - | chr4.1:11016563-11016582 | MS.gene47960:intron | 30.0% |
| !! | CAACAATAATTTGGTTCTTC+TGG | - | chr4.1:11017713-11017732 | MS.gene47960:intron | 30.0% |
| !! | TTATTCCTAGTGCTGTTTAT+TGG | - | chr4.1:11015771-11015790 | MS.gene47960:CDS | 30.0% |
| !!! | AAATATTCGGTTTTTAGTGC+CGG | + | chr4.1:11015326-11015345 | None:intergenic | 30.0% |
| !!! | AGTTGCTAATTTTGATTGTC+CGG | + | chr4.1:11017424-11017443 | None:intergenic | 30.0% |
| !!! | ATTCTTTTAACTTTCTGTCC+TGG | + | chr4.1:11017646-11017665 | None:intergenic | 30.0% |
| !!! | CTCAAACTTCTGTTTTGTTT+CGG | + | chr4.1:11016772-11016791 | None:intergenic | 30.0% |
| !!! | TTCTTTTAACTTTCTGTCCT+GGG | + | chr4.1:11017645-11017664 | None:intergenic | 30.0% |
| AACAACCACATCATTGTAAC+AGG | - | chr4.1:11017998-11018017 | MS.gene47960:CDS | 35.0% | |
| AACTGTCGTGTATTTGATGA+AGG | + | chr4.1:11017185-11017204 | None:intergenic | 35.0% | |
| AAGAACTCTACAAATTCCAC+TGG | - | chr4.1:11017594-11017613 | MS.gene47960:intron | 35.0% | |
| AAGGGTGATGTGAATGATAA+AGG | - | chr4.1:11017937-11017956 | MS.gene47960:CDS | 35.0% | |
| AAGTATCAGGTACATTAAGG+AGG | - | chr4.1:11016851-11016870 | MS.gene47960:intron | 35.0% | |
| ACTTGTTTGGATTCCAATTG+TGG | - | chr4.1:11016728-11016747 | MS.gene47960:intron | 35.0% | |
| AGTACACATGATGTGGATTT+GGG | - | chr4.1:11016944-11016963 | MS.gene47960:intron | 35.0% | |
| ATACATATGCTTGTATGGAG+GGG | - | chr4.1:11017522-11017541 | MS.gene47960:intron | 35.0% | |
| ATCTCACCAGGATAACATTA+AGG | - | chr4.1:11016327-11016346 | MS.gene47960:intron | 35.0% | |
| CAACCTCTTGATCAGATATA+TGG | + | chr4.1:11016644-11016663 | None:intergenic | 35.0% | |
| CACTGGAAATGATGTATGTA+GGG | - | chr4.1:11017611-11017630 | MS.gene47960:intron | 35.0% | |
| CATCTGCATCGTAACATATT+TGG | + | chr4.1:11016258-11016277 | None:intergenic | 35.0% | |
| CTAACCCAATCAAAGAGTAA+TGG | + | chr4.1:11017062-11017081 | None:intergenic | 35.0% | |
| GAACCAAATTATTGTTGGGT+CGG | + | chr4.1:11017710-11017729 | None:intergenic | 35.0% | |
| GATATCTTGCAAGTGTATGA+TGG | - | chr4.1:11015403-11015422 | MS.gene47960:intron | 35.0% | |
| GCAATGGATGATTACATACA+AGG | - | chr4.1:11017970-11017989 | MS.gene47960:CDS | 35.0% | |
| GCCTAAGTCAATTTAGTTAC+TGG | - | chr4.1:11016139-11016158 | MS.gene47960:CDS | 35.0% | |
| GCTATTGTCATAAGCTATCT+TGG | - | chr4.1:11015187-11015206 | MS.gene47960:CDS | 35.0% | |
| GGCAAATACATATGCTTGTA+TGG | - | chr4.1:11017517-11017536 | MS.gene47960:intron | 35.0% | |
| GTCCTAAAGATAGACTGATA+GGG | - | chr4.1:11017222-11017241 | MS.gene47960:CDS | 35.0% | |
| GTGTATTTGATGAAGGAGAA+AGG | + | chr4.1:11017178-11017197 | None:intergenic | 35.0% | |
| GTGTGTTAATCATGAAGATG+AGG | - | chr4.1:11016179-11016198 | MS.gene47960:CDS | 35.0% | |
| TCCTAAAGATAGACTGATAG+GGG | - | chr4.1:11017223-11017242 | MS.gene47960:CDS | 35.0% | |
| TGGATTCCAATTGTGGAAAA+GGG | - | chr4.1:11016735-11016754 | MS.gene47960:intron | 35.0% | |
| TGTAACAGGTTAATACTTCC+AGG | - | chr4.1:11018012-11018031 | MS.gene47960:CDS | 35.0% | |
| TGTATGTAATCATCCATTGC+AGG | + | chr4.1:11017970-11017989 | None:intergenic | 35.0% | |
| TGTTACAATGATGTGGTTGT+TGG | + | chr4.1:11017999-11018018 | None:intergenic | 35.0% | |
| TTAATACTTCCAGGAGTTGA+TGG | - | chr4.1:11018021-11018040 | MS.gene47960:CDS | 35.0% | |
| TTAATGTACCTGATACTTGC+CGG | + | chr4.1:11016849-11016868 | None:intergenic | 35.0% | |
| TTGGATTCCAATTGTGGAAA+AGG | - | chr4.1:11016734-11016753 | MS.gene47960:intron | 35.0% | |
| TTGGTAGAACCATCAAACAA+TGG | + | chr4.1:11016391-11016410 | None:intergenic | 35.0% | |
| TTTGATTGTCCGGTCTAAAT+CGG | + | chr4.1:11017414-11017433 | None:intergenic | 35.0% | |
| ! | AAATTTTACACAGGGAAAGC+AGG | - | chr4.1:11014973-11014992 | MS.gene47960:CDS | 35.0% |
| ! | CTATCAGTCTATCTTTAGGA+CGG | + | chr4.1:11017223-11017242 | None:intergenic | 35.0% |
| ! | CTCTTTGGAAAGATGAAACA+TGG | - | chr4.1:11017006-11017025 | MS.gene47960:CDS | 35.0% |
| ! | CTTATCCTTTCTCTAGCTTA+AGG | - | chr4.1:11016976-11016995 | MS.gene47960:CDS | 35.0% |
| ! | CTTTGGAAAGATGAAACATG+GGG | - | chr4.1:11017008-11017027 | MS.gene47960:CDS | 35.0% |
| ! | GCTCAGATTTTCGTCATATA+TGG | + | chr4.1:11017677-11017696 | None:intergenic | 35.0% |
| ! | TTTAAAGTGCCTTGATGAGT+TGG | - | chr4.1:11017906-11017925 | MS.gene47960:intron | 35.0% |
| !! | AAGATATTTGTTGTTGGTGC+AGG | + | chr4.1:11015892-11015911 | None:intergenic | 35.0% |
| !! | TAATTTGGTTCTTCTGGGTT+AGG | - | chr4.1:11017719-11017738 | MS.gene47960:intron | 35.0% |
| !! | TGCTAAAATATAGCGGATAG+CGG | - | chr4.1:11016093-11016112 | MS.gene47960:CDS | 35.0% |
| AACAGCACTAGGAATAAGAG+TGG | + | chr4.1:11015768-11015787 | None:intergenic | 40.0% | |
| AAGATTGTATGTGCTGAGTG+TGG | - | chr4.1:11018057-11018076 | MS.gene47960:CDS | 40.0% | |
| ACACATACCTGAATGATGTC+AGG | + | chr4.1:11014880-11014899 | None:intergenic | 40.0% | |
| ACATCATGTGTACTGCATTC+AGG | + | chr4.1:11016938-11016957 | None:intergenic | 40.0% | |
| ACCTAAATGTTGACGACAGA+TGG | + | chr4.1:11016058-11016077 | None:intergenic | 40.0% | |
| AGCCAATGATGCCGAAAATA+TGG | + | chr4.1:11015826-11015845 | None:intergenic | 40.0% | |
| AGTTTATGACCCTTCACTTC+TGG | - | chr4.1:11016821-11016840 | MS.gene47960:CDS | 40.0% | |
| ATCGTCCAATAAACAGCACT+AGG | + | chr4.1:11015779-11015798 | None:intergenic | 40.0% | |
| CACATACCTGAATGATGTCA+GGG | + | chr4.1:11014879-11014898 | None:intergenic | 40.0% | |
| CAGTACACATGATGTGGATT+TGG | - | chr4.1:11016943-11016962 | MS.gene47960:intron | 40.0% | |
| CATGTAATTCCCATGGAATC+TGG | + | chr4.1:11017298-11017317 | None:intergenic | 40.0% | |
| CCACCATATATCTGATCAAG+AGG | - | chr4.1:11016638-11016657 | MS.gene47960:intron | 40.0% | |
| CCACTGGAAATGATGTATGT+AGG | - | chr4.1:11017610-11017629 | MS.gene47960:intron | 40.0% | |
| CCTACATACATCATTTCCAG+TGG | + | chr4.1:11017613-11017632 | None:intergenic | 40.0% | |
| CCTCTTGATCAGATATATGG+TGG | + | chr4.1:11016641-11016660 | None:intergenic | 40.0% | |
| CGTCCTAAAGATAGACTGAT+AGG | - | chr4.1:11017221-11017240 | MS.gene47960:CDS | 40.0% | |
| CTTGATCAGATATATGGTGG+AGG | + | chr4.1:11016638-11016657 | None:intergenic | 40.0% | |
| GAACCATCAAACAATGGCAA+CGG | + | chr4.1:11016385-11016404 | None:intergenic | 40.0% | |
| GACATCAACAACAGAGACAT+GGG | - | chr4.1:11015972-11015991 | MS.gene47960:CDS | 40.0% | |
| GATCACTGCTATCAAAGCTT+AGG | + | chr4.1:11017825-11017844 | None:intergenic | 40.0% | |
| GATGAGGAAGAAACACTGTA+TGG | - | chr4.1:11016195-11016214 | MS.gene47960:CDS | 40.0% | |
| GCAATCAGTAACATCCAACA+TGG | + | chr4.1:11015678-11015697 | None:intergenic | 40.0% | |
| GCCAATGATGCCGAAAATAT+GGG | + | chr4.1:11015825-11015844 | None:intergenic | 40.0% | |
| GGCAAGTATCAGGTACATTA+AGG | - | chr4.1:11016848-11016867 | MS.gene47960:intron | 40.0% | |
| GGTTGGGCTATAATAAGTCA+AGG | - | chr4.1:11017847-11017866 | MS.gene47960:intron | 40.0% | |
| GTACACATGATGTGGATTTG+GGG | - | chr4.1:11016945-11016964 | MS.gene47960:intron | 40.0% | |
| GTCAAATAAGTCAGACTCGT+TGG | + | chr4.1:11015026-11015045 | None:intergenic | 40.0% | |
| TCAGCACATACAATCTTGTC+TGG | + | chr4.1:11018054-11018073 | None:intergenic | 40.0% | |
| TCCCCTATCAGTCTATCTTT+AGG | + | chr4.1:11017227-11017246 | None:intergenic | 40.0% | |
| TGAATGCAGTACACATGATG+TGG | - | chr4.1:11016937-11016956 | MS.gene47960:intron | 40.0% | |
| TGACATCAACAACAGAGACA+TGG | - | chr4.1:11015971-11015990 | MS.gene47960:CDS | 40.0% | |
| TGATAGCAGTGATCTTGGTT+GGG | - | chr4.1:11017831-11017850 | MS.gene47960:intron | 40.0% | |
| TGGTTCACAGCTTCGAATTT+AGG | + | chr4.1:11015644-11015663 | None:intergenic | 40.0% | |
| TTCTATGCTAACCCTTTGCT+TGG | + | chr4.1:11016410-11016429 | None:intergenic | 40.0% | |
| TTCTTCAATTGGAGCATGAG+TGG | + | chr4.1:11014791-11014810 | None:intergenic | 40.0% | |
| ! | AAAAGCTTTGATTCGCTGCA+AGG | - | chr4.1:11016354-11016373 | MS.gene47960:intron | 40.0% |
| ! | AGCTTTGATAGCAGTGATCT+TGG | - | chr4.1:11017826-11017845 | MS.gene47960:intron | 40.0% |
| ! | ATGCAACCGATTTAGCAAGA+CGG | + | chr4.1:11015574-11015593 | None:intergenic | 40.0% |
| ! | CACAAGTGCTGCAAAATCAA+TGG | - | chr4.1:11017570-11017589 | MS.gene47960:intron | 40.0% |
| ! | GCATGTGCATCCCATATTTT+CGG | - | chr4.1:11015812-11015831 | MS.gene47960:CDS | 40.0% |
| ! | GTTTTCGGCATCAGATGATA+CGG | - | chr4.1:11014744-11014763 | MS.gene47960:CDS | 40.0% |
| ! | TAAAGGAGTTTTGCCTGCAA+TGG | - | chr4.1:11017954-11017973 | MS.gene47960:CDS | 40.0% |
| ! | TCATGGTCAATGTACTGATC+AGG | + | chr4.1:11015722-11015741 | None:intergenic | 40.0% |
| ! | TCCCATATTTTCGGCATCAT+TGG | - | chr4.1:11015821-11015840 | MS.gene47960:CDS | 40.0% |
| ! | TGATGGTTCTACCAAGCAAA+GGG | - | chr4.1:11016396-11016415 | MS.gene47960:intron | 40.0% |
| ! | TGTAGAACTTTTCCATTGGC+TGG | + | chr4.1:11018083-11018102 | None:intergenic | 40.0% |
| ! | TTGATAGCAGTGATCTTGGT+TGG | - | chr4.1:11017830-11017849 | MS.gene47960:intron | 40.0% |
| ! | TTGATGGTTCTACCAAGCAA+AGG | - | chr4.1:11016395-11016414 | MS.gene47960:intron | 40.0% |
| !! | GTGCTGTTTATTGGACGATT+AGG | - | chr4.1:11015780-11015799 | MS.gene47960:CDS | 40.0% |
| !! | TATTTTCGGCATCATTGGCT+TGG | - | chr4.1:11015826-11015845 | MS.gene47960:CDS | 40.0% |
| !! | TTGGACGATTAGGAGTATTG+TGG | - | chr4.1:11015790-11015809 | MS.gene47960:CDS | 40.0% |
| !!! | ATTTTCGGCATCATTGGCTT+GGG | - | chr4.1:11015827-11015846 | MS.gene47960:CDS | 40.0% |
| !!! | TTTTGGGATCCAGATTCCAT+GGG | - | chr4.1:11017286-11017305 | MS.gene47960:CDS | 40.0% |
| AAAGCCTATGCTTGTGGTGT+TGG | - | chr4.1:11016890-11016909 | MS.gene47960:intron | 45.0% | |
| AACATGGGGACTTGCACTAT+TGG | - | chr4.1:11017022-11017041 | MS.gene47960:CDS | 45.0% | |
| AAGCTATTCATGGGATGCCA+AGG | - | chr4.1:11015475-11015494 | MS.gene47960:intron | 45.0% | |
| AATCGCGCCAAGATTCAACA+AGG | - | chr4.1:11016688-11016707 | MS.gene47960:intron | 45.0% | |
| ACACCTCAATGCTAACCTGA+AGG | + | chr4.1:11016581-11016600 | None:intergenic | 45.0% | |
| AGCTGTGAACCATCTTCTCA+AGG | - | chr4.1:11015652-11015671 | MS.gene47960:intron | 45.0% | |
| AGGCACAGTAAGAATGACAC+AGG | - | chr4.1:11017867-11017886 | MS.gene47960:intron | 45.0% | |
| ATGGAGGGGATGATATGGAA+TGG | - | chr4.1:11017536-11017555 | MS.gene47960:intron | 45.0% | |
| CAACACAAAGCCTATGCTTG+TGG | - | chr4.1:11016884-11016903 | MS.gene47960:intron | 45.0% | |
| CACCAACCGTCTTGCTAAAT+CGG | - | chr4.1:11015565-11015584 | MS.gene47960:intron | 45.0% | |
| CAGAAGCTAGACAGCATGAA+TGG | - | chr4.1:11016012-11016031 | MS.gene47960:CDS | 45.0% | |
| CATCTGATGCCGAAAACATG+TGG | + | chr4.1:11014741-11014760 | None:intergenic | 45.0% | |
| CCTGGTGAGATGTCTCAAAA+AGG | + | chr4.1:11016318-11016337 | None:intergenic | 45.0% | |
| CTTGTATGGAGGGGATGATA+TGG | - | chr4.1:11017531-11017550 | MS.gene47960:intron | 45.0% | |
| GACTGCAATCAATGATGCCA+TGG | - | chr4.1:11016793-11016812 | MS.gene47960:CDS | 45.0% | |
| GATCCGTTGCCATTGTTTGA+TGG | - | chr4.1:11016379-11016398 | MS.gene47960:intron | 45.0% | |
| GCATGCTAATGCATGGAGAT+GGG | + | chr4.1:11015102-11015121 | None:intergenic | 45.0% | |
| GCCATCTGTCGTCAACATTT+AGG | - | chr4.1:11016054-11016073 | MS.gene47960:CDS | 45.0% | |
| GGAATTGTTCCATCAACTCC+TGG | + | chr4.1:11018033-11018052 | None:intergenic | 45.0% | |
| GGCACAGTAAGAATGACACA+GGG | - | chr4.1:11017868-11017887 | MS.gene47960:intron | 45.0% | |
| GGGATGATATGGAATGGATC+AGG | - | chr4.1:11017542-11017561 | MS.gene47960:intron | 45.0% | |
| GGGTCATAAACTGAGTACCA+TGG | + | chr4.1:11016813-11016832 | None:intergenic | 45.0% | |
| GTAAGAATGACACAGGGCAA+AGG | - | chr4.1:11017874-11017893 | MS.gene47960:intron | 45.0% | |
| TATGTAGGGAAAAGCAACCC+AGG | - | chr4.1:11017625-11017644 | MS.gene47960:intron | 45.0% | |
| TCAGGTACATTAAGGAGGTG+TGG | - | chr4.1:11016856-11016875 | MS.gene47960:intron | 45.0% | |
| TCCAAGTATTCCTATGGCTG+TGG | + | chr4.1:11015447-11015466 | None:intergenic | 45.0% | |
| TCCACTCATCCAACTCATCA+AGG | + | chr4.1:11017918-11017937 | None:intergenic | 45.0% | |
| TCCTCCCTTAAGCTAGAGAA+AGG | + | chr4.1:11016984-11017003 | None:intergenic | 45.0% | |
| TCGCCGACCCAACAATAATT+TGG | - | chr4.1:11017704-11017723 | MS.gene47960:intron | 45.0% | |
| TCTCATCCCTGACATCATTC+AGG | - | chr4.1:11014870-11014889 | MS.gene47960:CDS | 45.0% | |
| TGCATGCTAATGCATGGAGA+TGG | + | chr4.1:11015103-11015122 | None:intergenic | 45.0% | |
| TGCTAATGCTATCACCACCT+TGG | + | chr4.1:11015495-11015514 | None:intergenic | 45.0% | |
| ! | AACCGATTTAGCAAGACGGT+TGG | + | chr4.1:11015570-11015589 | None:intergenic | 45.0% |
| ! | AAGGCTCCCTTTTCCACAAT+TGG | + | chr4.1:11016744-11016763 | None:intergenic | 45.0% |
| ! | AGCTATGCGCCACATGTTTT+CGG | - | chr4.1:11014729-11014748 | MS.gene47960:CDS | 45.0% |
| ! | GATGAGTTGGATGAGTGGAA+GGG | - | chr4.1:11017919-11017938 | MS.gene47960:intron | 45.0% |
| ! | GTCTAGCTTCTGAGTCAAAC+TGG | + | chr4.1:11016004-11016023 | None:intergenic | 45.0% |
| ! | TCAACGTTTCAGGTGCTTCA+TGG | + | chr4.1:11015739-11015758 | None:intergenic | 45.0% |
| ! | TCATTGTTTCAGGTAACGGC+AGG | - | chr4.1:11017496-11017515 | MS.gene47960:intron | 45.0% |
| ! | TCCTTTCTCTAGCTTAAGGG+AGG | - | chr4.1:11016980-11016999 | MS.gene47960:CDS | 45.0% |
| ! | TCTTGCAAGTGTATGATGGG+TGG | - | chr4.1:11015407-11015426 | MS.gene47960:intron | 45.0% |
| ! | TGATGAGTTGGATGAGTGGA+AGG | - | chr4.1:11017918-11017937 | MS.gene47960:intron | 45.0% |
| !! | AGATGGCGAGCTGATTTTGA+AGG | + | chr4.1:11016041-11016060 | None:intergenic | 45.0% |
| !! | AGGTTAGCATTGAGGTGTTG+AGG | - | chr4.1:11016583-11016602 | MS.gene47960:intron | 45.0% |
| !! | AGTCTATCTTTAGGACGGTG+AGG | + | chr4.1:11017218-11017237 | None:intergenic | 45.0% |
| !! | CTTGCAAGTGTATGATGGGT+GGG | - | chr4.1:11015408-11015427 | MS.gene47960:intron | 45.0% |
| !! | GGTGCAAATGGGTGTCATTA+AGG | - | chr4.1:11014994-11015013 | MS.gene47960:CDS | 45.0% |
| !! | TTGCAAGTGTATGATGGGTG+GGG | - | chr4.1:11015409-11015428 | MS.gene47960:intron | 45.0% |
| !!! | CCTTTTTGAGACATCTCACC+AGG | - | chr4.1:11016315-11016334 | MS.gene47960:intron | 45.0% |
| !!! | CTGTTTTGTTTCGGTCCACA+AGG | + | chr4.1:11016763-11016782 | None:intergenic | 45.0% |
| !!! | CTTTTGGGATCCAGATTCCA+TGG | - | chr4.1:11017285-11017304 | MS.gene47960:CDS | 45.0% |
| AAGCCAGAATTCCCCTAGGT+TGG | + | chr4.1:11015528-11015547 | None:intergenic | 50.0% | |
| ACAGGGAAAGCAGGTGCAAA+TGG | - | chr4.1:11014982-11015001 | MS.gene47960:CDS | 50.0% | |
| AGCATTTGCAGCCAACCTAG+GGG | - | chr4.1:11015514-11015533 | MS.gene47960:intron | 50.0% | |
| CAGCATTTGCAGCCAACCTA+GGG | - | chr4.1:11015513-11015532 | MS.gene47960:intron | 50.0% | |
| CAGGGAAAGCAGGTGCAAAT+GGG | - | chr4.1:11014983-11015002 | MS.gene47960:CDS | 50.0% | |
| CCATCTTCTCAAGGCCATGT+TGG | - | chr4.1:11015661-11015680 | MS.gene47960:intron | 50.0% | |
| CGATTTAGCAAGACGGTTGG+TGG | + | chr4.1:11015567-11015586 | None:intergenic | 50.0% | |
| CTACAAGCCAGAATTCCCCT+AGG | + | chr4.1:11015532-11015551 | None:intergenic | 50.0% | |
| CTATTCATGGGATGCCAAGG+TGG | - | chr4.1:11015478-11015497 | MS.gene47960:intron | 50.0% | |
| GATGTGGATTTGGGGAAGCA+TGG | - | chr4.1:11016953-11016972 | MS.gene47960:intron | 50.0% | |
| GATTGTCCGGTCTAAATCGG+TGG | + | chr4.1:11017411-11017430 | None:intergenic | 50.0% | |
| GCCACAGCCATAGGAATACT+TGG | - | chr4.1:11015443-11015462 | MS.gene47960:intron | 50.0% | |
| GCTAATGCATGGAGATGGGA+GGG | + | chr4.1:11015098-11015117 | None:intergenic | 50.0% | |
| GCTTAAGGGAGGAAGCTCTT+TGG | - | chr4.1:11016991-11017010 | MS.gene47960:CDS | 50.0% | |
| GGATCCAACACCACAAGCAT+AGG | + | chr4.1:11016897-11016916 | None:intergenic | 50.0% | |
| GTGGAAGCAGTCAACGTTTC+AGG | + | chr4.1:11015749-11015768 | None:intergenic | 50.0% | |
| TGCGTCACGCAATTACTGCA+TGG | - | chr4.1:11017443-11017462 | MS.gene47960:intron | 50.0% | |
| TGCTAATGCATGGAGATGGG+AGG | + | chr4.1:11015099-11015118 | None:intergenic | 50.0% | |
| TTGTGGAAAAGGGAGCCTTG+TGG | - | chr4.1:11016745-11016764 | MS.gene47960:intron | 50.0% | |
| ! | CCAACATGGCCTTGAGAAGA+TGG | + | chr4.1:11015664-11015683 | None:intergenic | 50.0% |
| ! | CTGCCTTCAGGTTAGCATTG+AGG | - | chr4.1:11016575-11016594 | MS.gene47960:intron | 50.0% |
| ! | CTTGTGGTGTTGGATCCACA+GGG | - | chr4.1:11016900-11016919 | MS.gene47960:intron | 50.0% |
| ! | GCCTTGATGAGTTGGATGAG+TGG | - | chr4.1:11017914-11017933 | MS.gene47960:intron | 50.0% |
| ! | GCTCTAGATTGGTTCTTCCG+TGG | + | chr4.1:11014712-11014731 | None:intergenic | 50.0% |
| ! | GGGTTAGGCTTGAAAGCATG+TGG | - | chr4.1:11017734-11017753 | MS.gene47960:CDS | 50.0% |
| ! | TTGTGGTGTTGGATCCACAG+GGG | - | chr4.1:11016901-11016920 | MS.gene47960:intron | 50.0% |
| !! | GCATCATTGGCTTGGGTCAA+GGG | - | chr4.1:11015834-11015853 | MS.gene47960:CDS | 50.0% |
| !! | TCTTGGCCACCGATTTAGAC+CGG | - | chr4.1:11017402-11017421 | MS.gene47960:intron | 50.0% |
| !! | TGCAAGTGTATGATGGGTGG+GGG | - | chr4.1:11015410-11015429 | MS.gene47960:intron | 50.0% |
| !! | TGTGGCGCATAGCTCTAGAT+TGG | + | chr4.1:11014723-11014742 | None:intergenic | 50.0% |
| AGGTTCACAACCTTCCCCTG+TGG | + | chr4.1:11016918-11016937 | None:intergenic | 55.0% | |
| CAATTGGAGCATGAGTGGCG+CGG | + | chr4.1:11014786-11014805 | None:intergenic | 55.0% | |
| CAGCCAACCTAGGGGAATTC+TGG | - | chr4.1:11015522-11015541 | MS.gene47960:intron | 55.0% | |
| CAGGGATGAGAGAAGCTGCA+TGG | + | chr4.1:11014861-11014880 | None:intergenic | 55.0% | |
| GATGCTCATGCCACAGCCAT+AGG | - | chr4.1:11015434-11015453 | MS.gene47960:intron | 55.0% | |
| GCAGCATTTGCAGCCAACCT+AGG | - | chr4.1:11015512-11015531 | MS.gene47960:intron | 55.0% | |
| ! | GCTTGTGGTGTTGGATCCAC+AGG | - | chr4.1:11016899-11016918 | MS.gene47960:intron | 55.0% |
| !! | GGCATCATTGGCTTGGGTCA+AGG | - | chr4.1:11015833-11015852 | MS.gene47960:CDS | 55.0% |
| !! | TGACCCTTCACTTCTGGAGC+CGG | - | chr4.1:11016827-11016846 | MS.gene47960:CDS | 55.0% |
| !! | TTCTGGAGCCGGCAAGTATC+AGG | - | chr4.1:11016838-11016857 | MS.gene47960:intron | 55.0% |
| !! | TTGCCGGCTCCAGAAGTGAA+GGG | + | chr4.1:11016833-11016852 | None:intergenic | 55.0% |
| TGCTGAGTGTGGCCAGCCAA+TGG | - | chr4.1:11018068-11018087 | MS.gene47960:CDS | 60.0% | |
| ! | GGTGTTGGATCCACAGGGGA+AGG | - | chr4.1:11016905-11016924 | MS.gene47960:intron | 60.0% |
| !! | CTTGCCGGCTCCAGAAGTGA+AGG | + | chr4.1:11016834-11016853 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11014697 | 11018125 | 11014697 | ID=MS.gene47960 |
| chr4.1 | mRNA | 11014697 | 11018125 | 11014697 | ID=MS.gene47960.t1;Parent=MS.gene47960 |
| chr4.1 | exon | 11017931 | 11018125 | 11017931 | ID=MS.gene47960.t1.exon1;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11017931 | 11018125 | 11017931 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| chr4.1 | exon | 11017732 | 11017836 | 11017732 | ID=MS.gene47960.t1.exon2;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11017732 | 11017836 | 11017732 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| chr4.1 | exon | 11016967 | 11017418 | 11016967 | ID=MS.gene47960.t1.exon3;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11016967 | 11017418 | 11016967 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| chr4.1 | exon | 11016747 | 11016856 | 11016747 | ID=MS.gene47960.t1.exon4;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11016747 | 11016856 | 11016747 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| chr4.1 | exon | 11016405 | 11016547 | 11016405 | ID=MS.gene47960.t1.exon5;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11016405 | 11016547 | 11016405 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| chr4.1 | exon | 11015746 | 11016237 | 11015746 | ID=MS.gene47960.t1.exon6;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11015746 | 11016237 | 11015746 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| chr4.1 | exon | 11014697 | 11015314 | 11014697 | ID=MS.gene47960.t1.exon7;Parent=MS.gene47960.t1 |
| chr4.1 | CDS | 11014697 | 11015314 | 11014697 | ID=cds.MS.gene47960.t1;Parent=MS.gene47960.t1 |
| Gene Sequence |
| Protein sequence |
