Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48348.t1 | RHN63483.1 | 92.7 | 302 | 19 | 1 | 1 | 299 | 1 | 302 | 7.10E-123 | 450.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48348.t1 | Q93VK9 | 34.7 | 294 | 183 | 5 | 10 | 299 | 24 | 312 | 8.4e-32 | 139.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48348.t1 | A0A072UQ27 | 92.7 | 302 | 19 | 1 | 1 | 299 | 1 | 302 | 5.1e-123 | 450.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene48348 | 0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene049411 | MS.gene48348 | 0.837053 | 6.52E-57 | -1.69E-46 |
| MS.gene050352 | MS.gene48348 | 0.808457 | 3.07E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene48348 | 0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene48348 | 0.822235 | 2.64E-53 | -1.69E-46 |
| MS.gene052793 | MS.gene48348 | 0.802959 | 4.38E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene48348 | 0.802405 | 5.70E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene48348 | 0.831405 | 1.70E-55 | -1.69E-46 |
| MS.gene055221 | MS.gene48348 | 0.81367 | 2.28E-51 | -1.69E-46 |
| MS.gene055339 | MS.gene48348 | 0.824654 | 7.18E-54 | -1.69E-46 |
| MS.gene055765 | MS.gene48348 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene48348 | 0.860681 | 1.74E-63 | -1.69E-46 |
| MS.gene057684 | MS.gene48348 | -0.813738 | 2.20E-51 | -1.69E-46 |
| MS.gene058149 | MS.gene48348 | 0.827088 | 1.90E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene48348 | 0.808029 | 3.79E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene48348 | 0.85233 | 4.96E-61 | -1.69E-46 |
| MS.gene05985 | MS.gene48348 | -0.843815 | 1.11E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene48348 | 0.840494 | 8.41E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48348.t1 | MTR_4g105330 | 93.709 | 302 | 16 | 1 | 1 | 299 | 1 | 302 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48348.t1 | AT3G48210 | 41.472 | 299 | 156 | 8 | 10 | 299 | 24 | 312 | 4.79e-62 | 199 |
Find 61 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCCATCTCTTGGTATAAC+AGG | 0.291680 | 8.3:+17402016 | MS.gene48348:CDS |
| CATCTGTCTTGTTTAATTCA+TGG | 0.302544 | 8.3:-17402375 | None:intergenic |
| TTTGATGGATTGGAAGGATT+TGG | 0.310983 | 8.3:-17400143 | None:intergenic |
| CGAACAGATAAAGCAGAATT+AGG | 0.320831 | 8.3:-17403074 | None:intergenic |
| AAAGCAGAATTAGGAGATAA+AGG | 0.332141 | 8.3:-17403065 | None:intergenic |
| TTCTGCTTCGCAGCGGGTTA+AGG | 0.342230 | 8.3:-17400074 | None:intergenic |
| GTAAAAGAGTACTCCTCATT+TGG | 0.343740 | 8.3:-17402194 | None:intergenic |
| GAAGGAAGTGGAAGATGAAT+TGG | 0.348717 | 8.3:+17400308 | MS.gene48348:CDS |
| TCGCCAGTCTCCACGTTTGA+AGG | 0.380013 | 8.3:+17403094 | MS.gene48348:CDS |
| TCTTGGTATAACAGGGTACT+TGG | 0.397967 | 8.3:+17402024 | MS.gene48348:CDS |
| GGCTAAGCGAATGGCTTTGT+TGG | 0.400276 | 8.3:+17400450 | MS.gene48348:CDS |
| GAATTGGTTAAAGTACTTGC+AGG | 0.417371 | 8.3:+17400324 | MS.gene48348:CDS |
| AGTTCGCAGAAGGAAAAGTT+TGG | 0.432380 | 8.3:+17403040 | MS.gene48348:CDS |
| TAAAGACAAATTGAAGGAAG+TGG | 0.439442 | 8.3:+17400296 | MS.gene48348:CDS |
| AGGAGCGGATGAAGATATAA+AGG | 0.452608 | 8.3:-17402928 | None:intergenic |
| GTTCTAACAACAGTTAATCC+TGG | 0.455209 | 8.3:+17402897 | MS.gene48348:CDS |
| TGTGATTTCTGCTTCGCAGC+GGG | 0.455421 | 8.3:-17400080 | None:intergenic |
| TTTATATCTTCATCCGCTCC+TGG | 0.466324 | 8.3:+17402930 | MS.gene48348:CDS |
| TTCAGAAAAGACGCGTAAAG+AGG | 0.467634 | 8.3:+17400429 | MS.gene48348:intron |
| CGTTGTGAACCTTCCTTCGA+TGG | 0.489675 | 8.3:+17402337 | MS.gene48348:CDS |
| TGAGGTTAAAGACAAATTGA+AGG | 0.495061 | 8.3:+17400290 | MS.gene48348:CDS |
| GCTTCTGCTAAGGCTAGAGT+TGG | 0.508997 | 8.3:+17400481 | MS.gene48348:CDS |
| CTTCGATGGTATTGAAGAGC+TGG | 0.509662 | 8.3:+17402351 | MS.gene48348:CDS |
| ATACCTTCAAACGTGGAGAC+TGG | 0.510056 | 8.3:-17403097 | None:intergenic |
| GGATGCTATTGCTTCTGCTA+AGG | 0.514115 | 8.3:+17400471 | MS.gene48348:CDS |
| GGATTGGAAGGATTTGGAAA+AGG | 0.514441 | 8.3:-17400137 | None:intergenic |
| CAACAAACCGCGAAAACTCA+AGG | 0.515409 | 8.3:+17400175 | MS.gene48348:CDS |
| TTAAGTTTGTCAGAGTAATG+AGG | 0.518116 | 8.3:+17402404 | MS.gene48348:CDS |
| GAAACTCTGGCAGCATCTGA+AGG | 0.522058 | 8.3:+17401952 | MS.gene48348:intron |
| TTTCTATCGCAGCAATCACT+CGG | 0.528626 | 8.3:+17400559 | MS.gene48348:CDS |
| GAGCATGAAGTGGAACGCTC+TGG | 0.532714 | 8.3:+17402990 | MS.gene48348:CDS |
| ATCTGAAGGGAGGTTGAATG+AGG | 0.533325 | 8.3:+17401966 | MS.gene48348:CDS |
| GATATAAAGGCAGATTCTCC+AGG | 0.534729 | 8.3:-17402915 | None:intergenic |
| GAAGGATTTGGAAAAGGAAG+CGG | 0.548779 | 8.3:-17400131 | None:intergenic |
| TAGAAGTGATTCTACAACCA+TGG | 0.551320 | 8.3:+17402962 | MS.gene48348:CDS |
| AAACACAGGAGGCCATCTCT+TGG | 0.552693 | 8.3:+17402007 | MS.gene48348:CDS |
| TGCTTCGCAGCGGGTTAAGG+AGG | 0.553460 | 8.3:-17400071 | None:intergenic |
| CTTCTCAGTTCAATTAGATG+AGG | 0.570883 | 8.3:+17400272 | MS.gene48348:intron |
| CGGCGAAAGCGTCGACGGTG+TGG | 0.579854 | 8.3:-17400111 | None:intergenic |
| AAACTCTGGCAGCATCTGAA+GGG | 0.583847 | 8.3:+17401953 | MS.gene48348:intron |
| GGAAGCGGCGAAAGCGTCGA+CGG | 0.585423 | 8.3:-17400116 | None:intergenic |
| TCACTTCTAACAGATGTGCC+AGG | 0.592551 | 8.3:-17402948 | None:intergenic |
| TCTCAACTCAAGTATTCAAG+AGG | 0.594999 | 8.3:+17400507 | MS.gene48348:CDS |
| AAATTTGATGAATCCAAATG+AGG | 0.603849 | 8.3:+17402181 | MS.gene48348:CDS |
| CATGGAAAATGAGCATGAAG+TGG | 0.605107 | 8.3:+17402980 | MS.gene48348:CDS |
| TACCCTGTTATACCAAGAGA+TGG | 0.606063 | 8.3:-17402019 | None:intergenic |
| CTCTGGCAGCATCTGAAGGG+AGG | 0.608901 | 8.3:+17401956 | MS.gene48348:intron |
| CAGCTCTTCAATACCATCGA+AGG | 0.622116 | 8.3:-17402350 | None:intergenic |
| CATGAATTAAACAAGACAGA+TGG | 0.623903 | 8.3:+17402376 | MS.gene48348:CDS |
| GCGTAAAGAGGCTAAGCGAA+TGG | 0.626876 | 8.3:+17400441 | MS.gene48348:CDS |
| TTTCAAGAAGCATTGACACA+AGG | 0.631864 | 8.3:+17402433 | MS.gene48348:CDS |
| TCTTCAATACCATCGAAGGA+AGG | 0.637490 | 8.3:-17402346 | None:intergenic |
| GGCCATCTCTTGGTATAACA+GGG | 0.647513 | 8.3:+17402017 | MS.gene48348:CDS |
| TCTAACAGATGTGCCAGGAG+CGG | 0.649007 | 8.3:-17402943 | None:intergenic |
| TCTGAAGGGAGGTTGAATGA+GGG | 0.651760 | 8.3:+17401967 | MS.gene48348:CDS |
| TGAACATACAGATGAAACAC+AGG | 0.659863 | 8.3:+17401993 | MS.gene48348:CDS |
| TTTCGCGGTTTGTTGTGCGG+TGG | 0.664534 | 8.3:-17400167 | None:intergenic |
| GTGTGATTTCTGCTTCGCAG+CGG | 0.670448 | 8.3:-17400081 | None:intergenic |
| GTAATTCATACCTTCAAACG+TGG | 0.717846 | 8.3:-17403104 | None:intergenic |
| ACATACAGATGAAACACAGG+AGG | 0.726406 | 8.3:+17401996 | MS.gene48348:CDS |
| GTATTCAAGAGGTTCGAACG+AGG | 0.743006 | 8.3:+17400518 | MS.gene48348:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTTAAAAAGACTGA+TGG | - | chr8.3:17401460-17401479 | None:intergenic | 15.0% |
| !! | TGTTATAAAATAAGATTTGA+AGG | + | chr8.3:17401160-17401179 | MS.gene48348:intron | 15.0% |
| !!! | AATTAACTTTTTTTTGCTTA+AGG | + | chr8.3:17402079-17402098 | MS.gene48348:intron | 15.0% |
| !!! | ACCTTATTTGTTTTAAATAA+TGG | + | chr8.3:17400374-17400393 | MS.gene48348:intron | 15.0% |
| !!! | ATCTTCAAAAAAGATTTTAA+AGG | - | chr8.3:17401128-17401147 | None:intergenic | 15.0% |
| !!! | ATGTATAAGTATTTTTATCA+TGG | - | chr8.3:17402226-17402245 | None:intergenic | 15.0% |
| !!! | TCATTATAATATGAAGTATT+TGG | - | chr8.3:17402617-17402636 | None:intergenic | 15.0% |
| !!! | TCCATTATTTAAAACAAATA+AGG | - | chr8.3:17400378-17400397 | None:intergenic | 15.0% |
| !!! | TTCAAATCTTATTTTATAAC+AGG | - | chr8.3:17401161-17401180 | None:intergenic | 15.0% |
| !! | ACTTAAATAGCTATAAATTG+CGG | - | chr8.3:17400611-17400630 | None:intergenic | 20.0% |
| !! | GTTCATACATTCAAAAATAA+TGG | - | chr8.3:17401653-17401672 | None:intergenic | 20.0% |
| !! | TTAATAGAATCACTTCATAT+TGG | - | chr8.3:17402580-17402599 | None:intergenic | 20.0% |
| !!! | TATCTAATTGCTATTAAACA+GGG | + | chr8.3:17402868-17402887 | MS.gene48348:intron | 20.0% |
| !!! | TTATCATTTTACAATTCAAG+CGG | - | chr8.3:17402536-17402555 | None:intergenic | 20.0% |
| !!! | TTATCTAATTGCTATTAAAC+AGG | + | chr8.3:17402867-17402886 | MS.gene48348:intron | 20.0% |
| ! | AAAATGAAAACCCTAATAAG+AGG | - | chr8.3:17400244-17400263 | None:intergenic | 25.0% |
| ! | AAATTTGATGAATCCAAATG+AGG | + | chr8.3:17402181-17402200 | MS.gene48348:CDS | 25.0% |
| ! | AGTGGTAGAATTAATGAAAT+TGG | + | chr8.3:17401558-17401577 | MS.gene48348:intron | 25.0% |
| ! | ATAAAAAATAAGCCAATCCA+TGG | + | chr8.3:17400889-17400908 | MS.gene48348:intron | 25.0% |
| ! | ATTATTGAACTGTTCAAACA+TGG | + | chr8.3:17402694-17402713 | MS.gene48348:intron | 25.0% |
| ! | GTATATAAAATCATAAGTGC+AGG | - | chr8.3:17402257-17402276 | None:intergenic | 25.0% |
| ! | GTGGTAGAATTAATGAAATT+GGG | + | chr8.3:17401559-17401578 | MS.gene48348:intron | 25.0% |
| ! | GTTCAATAATACATATGAAC+TGG | - | chr8.3:17402684-17402703 | None:intergenic | 25.0% |
| ! | TACCACTTTGATACATAAAA+GGG | - | chr8.3:17401545-17401564 | None:intergenic | 25.0% |
| ! | TGAAGTTGTAATGAAGTAAT+GGG | + | chr8.3:17401508-17401527 | MS.gene48348:intron | 25.0% |
| ! | TTGAAGTTGTAATGAAGTAA+TGG | + | chr8.3:17401507-17401526 | MS.gene48348:intron | 25.0% |
| !! | AAGGATGTTTTTCTAACAAT+GGG | + | chr8.3:17401179-17401198 | MS.gene48348:intron | 25.0% |
| !! | ATATGGATTAAAAGAGAAGA+TGG | - | chr8.3:17401932-17401951 | None:intergenic | 25.0% |
| !! | TATGGATTAAAAGAGAAGAT+GGG | - | chr8.3:17401931-17401950 | None:intergenic | 25.0% |
| !! | TTTTAATCCATATGAAACTC+TGG | + | chr8.3:17401939-17401958 | MS.gene48348:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr8.3:17400694-17400713 | None:intergenic | 30.0% | |
| AAAGATAAAAGAGATGGTGT+AGG | - | chr8.3:17402309-17402328 | None:intergenic | 30.0% | |
| AAAGCAGAATTAGGAGATAA+AGG | - | chr8.3:17403068-17403087 | None:intergenic | 30.0% | |
| AAGCTTGTCTTGTACAAAAT+CGG | + | chr8.3:17401590-17401609 | MS.gene48348:intron | 30.0% | |
| AATTATGATGTCAACAACCA+TGG | - | chr8.3:17400909-17400928 | None:intergenic | 30.0% | |
| ACACTGAAAGATAAAAGAGA+TGG | - | chr8.3:17402315-17402334 | None:intergenic | 30.0% | |
| ATATTGGAGTTCTGCATATT+TGG | - | chr8.3:17402564-17402583 | None:intergenic | 30.0% | |
| ATCTCAATACTTATGCAAGA+TGG | - | chr8.3:17400982-17401001 | None:intergenic | 30.0% | |
| ATGGTTGTTGACATCATAAT+TGG | + | chr8.3:17400908-17400927 | MS.gene48348:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+CGG | - | chr8.3:17400695-17400714 | None:intergenic | 30.0% | |
| CATGAATTAAACAAGACAGA+TGG | + | chr8.3:17402376-17402395 | MS.gene48348:CDS | 30.0% | |
| CTACCACTTTGATACATAAA+AGG | - | chr8.3:17401546-17401565 | None:intergenic | 30.0% | |
| CTTATTAGTTATGCTCTTCA+GGG | + | chr8.3:17402135-17402154 | MS.gene48348:intron | 30.0% | |
| TAAAGACAAATTGAAGGAAG+TGG | + | chr8.3:17400296-17400315 | MS.gene48348:CDS | 30.0% | |
| TAAATAGTATCTTCGCTTGT+TGG | + | chr8.3:17402807-17402826 | MS.gene48348:intron | 30.0% | |
| TCTTATTCATAAGCTTGTCA+AGG | + | chr8.3:17400757-17400776 | MS.gene48348:intron | 30.0% | |
| TGAGGTTAAAGACAAATTGA+AGG | + | chr8.3:17400290-17400309 | MS.gene48348:CDS | 30.0% | |
| TTAAGTTTGTCAGAGTAATG+AGG | + | chr8.3:17402404-17402423 | MS.gene48348:CDS | 30.0% | |
| TTATTAGTTATGCTCTTCAG+GGG | + | chr8.3:17402136-17402155 | MS.gene48348:intron | 30.0% | |
| TTGAGATTACATGTACTATG+AGG | + | chr8.3:17400995-17401014 | MS.gene48348:intron | 30.0% | |
| TTGTTGGAAATTGGATGAAA+GGG | + | chr8.3:17402823-17402842 | MS.gene48348:intron | 30.0% | |
| ! | AACTATGTTGTGATCGTTTT+GGG | + | chr8.3:17401294-17401313 | MS.gene48348:intron | 30.0% |
| ! | ATGAAGTAATGGGATATCAT+TGG | + | chr8.3:17401518-17401537 | MS.gene48348:intron | 30.0% |
| ! | ATGGATTAAAAGAGAAGATG+GGG | - | chr8.3:17401930-17401949 | None:intergenic | 30.0% |
| ! | GAAGGATGTTTTTCTAACAA+TGG | + | chr8.3:17401178-17401197 | MS.gene48348:intron | 30.0% |
| ! | TAACTATGTTGTGATCGTTT+TGG | + | chr8.3:17401293-17401312 | MS.gene48348:intron | 30.0% |
| ! | TCACTCTTTTCCTCTTATTA+GGG | + | chr8.3:17400231-17400250 | MS.gene48348:intron | 30.0% |
| ! | TTCACTCTTTTCCTCTTATT+AGG | + | chr8.3:17400230-17400249 | MS.gene48348:intron | 30.0% |
| !! | CATCTGTCTTGTTTAATTCA+TGG | - | chr8.3:17402378-17402397 | None:intergenic | 30.0% |
| !! | GTAAATCTCTGTTTTTCTTC+TGG | + | chr8.3:17401066-17401085 | MS.gene48348:intron | 30.0% |
| !! | TACTTGGTTTTCATGTCAAA+GGG | + | chr8.3:17402040-17402059 | MS.gene48348:CDS | 30.0% |
| !! | TTATTGGTTTACTACATCTC+TGG | + | chr8.3:17401336-17401355 | MS.gene48348:intron | 30.0% |
| !!! | TGCATTCTATGTTTTGATTG+AGG | + | chr8.3:17401784-17401803 | MS.gene48348:intron | 30.0% |
| AGAAAAAACAAGTTCGCAGA+AGG | + | chr8.3:17403030-17403049 | MS.gene48348:CDS | 35.0% | |
| AGCATAGAACTAGTAAGACA+TGG | + | chr8.3:17401090-17401109 | MS.gene48348:intron | 35.0% | |
| AGCTTGTCTTGTACAAAATC+GGG | + | chr8.3:17401591-17401610 | MS.gene48348:intron | 35.0% | |
| ATACAGATTCACACTCTGTT+TGG | + | chr8.3:17400642-17400661 | MS.gene48348:intron | 35.0% | |
| CCTTATTAGTTATGCTCTTC+AGG | + | chr8.3:17402134-17402153 | MS.gene48348:intron | 35.0% | |
| CGAACAGATAAAGCAGAATT+AGG | - | chr8.3:17403077-17403096 | None:intergenic | 35.0% | |
| CTCATCTAATTGAACTGAGA+AGG | - | chr8.3:17400274-17400293 | None:intergenic | 35.0% | |
| CTTCTCAGTTCAATTAGATG+AGG | + | chr8.3:17400272-17400291 | MS.gene48348:intron | 35.0% | |
| CTTGTTGGAAATTGGATGAA+AGG | + | chr8.3:17402822-17402841 | MS.gene48348:intron | 35.0% | |
| GTTCTAACAACAGTTAATCC+TGG | + | chr8.3:17402897-17402916 | MS.gene48348:CDS | 35.0% | |
| GTTGACATCATAATTGGACA+TGG | + | chr8.3:17400914-17400933 | MS.gene48348:intron | 35.0% | |
| TACTTATGCAAGATGGCATT+TGG | - | chr8.3:17400975-17400994 | None:intergenic | 35.0% | |
| TAGAAGTGATTCTACAACCA+TGG | + | chr8.3:17402962-17402981 | MS.gene48348:CDS | 35.0% | |
| TCTCAACTCAAGTATTCAAG+AGG | + | chr8.3:17400507-17400526 | MS.gene48348:CDS | 35.0% | |
| TGAACATACAGATGAAACAC+AGG | + | chr8.3:17401993-17402012 | MS.gene48348:CDS | 35.0% | |
| TGGATTAAAAGAGAAGATGG+GGG | - | chr8.3:17401929-17401948 | None:intergenic | 35.0% | |
| TTACACGTTTGTAACTGTTG+TGG | + | chr8.3:17401252-17401271 | MS.gene48348:intron | 35.0% | |
| TTGCAGGTTCGTTTGTATTT+GGG | + | chr8.3:17400340-17400359 | MS.gene48348:intron | 35.0% | |
| ! | ACTATGTTGTGATCGTTTTG+GGG | + | chr8.3:17401295-17401314 | MS.gene48348:intron | 35.0% |
| ! | CCTGAAGAGCATAACTAATA+AGG | - | chr8.3:17402137-17402156 | None:intergenic | 35.0% |
| ! | GAATTGGTTAAAGTACTTGC+AGG | + | chr8.3:17400324-17400343 | MS.gene48348:CDS | 35.0% |
| ! | GTCCCTTTTATGTATCAAAG+TGG | + | chr8.3:17401540-17401559 | MS.gene48348:intron | 35.0% |
| ! | TATCTTCGCTTGTTGGAAAT+TGG | + | chr8.3:17402814-17402833 | MS.gene48348:intron | 35.0% |
| !! | ACTTGGTTTTCATGTCAAAG+GGG | + | chr8.3:17402041-17402060 | MS.gene48348:CDS | 35.0% |
| !! | GTAAAAGAGTACTCCTCATT+TGG | - | chr8.3:17402197-17402216 | None:intergenic | 35.0% |
| !! | GTACTTGGTTTTCATGTCAA+AGG | + | chr8.3:17402039-17402058 | MS.gene48348:CDS | 35.0% |
| !! | TTTCAAGAAGCATTGACACA+AGG | + | chr8.3:17402433-17402452 | MS.gene48348:CDS | 35.0% |
| !! | TTTGATGGATTGGAAGGATT+TGG | - | chr8.3:17400146-17400165 | None:intergenic | 35.0% |
| ACATACAGATGAAACACAGG+AGG | + | chr8.3:17401996-17402015 | MS.gene48348:CDS | 40.0% | |
| AGGAGCGGATGAAGATATAA+AGG | - | chr8.3:17402931-17402950 | None:intergenic | 40.0% | |
| AGTTCGCAGAAGGAAAAGTT+TGG | + | chr8.3:17403040-17403059 | MS.gene48348:CDS | 40.0% | |
| ATCTCAACCAAGTGACTTCT+CGG | + | chr8.3:17401399-17401418 | MS.gene48348:intron | 40.0% | |
| ATGAGTGTATGCATGTGATG+CGG | + | chr8.3:17402482-17402501 | MS.gene48348:intron | 40.0% | |
| ATTAAAAGAGAAGATGGGGG+AGG | - | chr8.3:17401926-17401945 | None:intergenic | 40.0% | |
| CATGGAAAATGAGCATGAAG+TGG | + | chr8.3:17402980-17402999 | MS.gene48348:CDS | 40.0% | |
| CTATAAATTGCGGCATTTGC+AGG | - | chr8.3:17400601-17400620 | None:intergenic | 40.0% | |
| CTTGCAGGTTCGTTTGTATT+TGG | + | chr8.3:17400339-17400358 | MS.gene48348:intron | 40.0% | |
| GAAGGAAGTGGAAGATGAAT+TGG | + | chr8.3:17400308-17400327 | MS.gene48348:CDS | 40.0% | |
| GAAGGATTTGGAAAAGGAAG+CGG | - | chr8.3:17400134-17400153 | None:intergenic | 40.0% | |
| GATATAAAGGCAGATTCTCC+AGG | - | chr8.3:17402918-17402937 | None:intergenic | 40.0% | |
| GCGAAAACTCAAGGTCTTTA+GGG | + | chr8.3:17400184-17400203 | MS.gene48348:intron | 40.0% | |
| GGAAGTGAGCATCATGATAT+CGG | - | chr8.3:17401632-17401651 | None:intergenic | 40.0% | |
| GGATTGGAAGGATTTGGAAA+AGG | - | chr8.3:17400140-17400159 | None:intergenic | 40.0% | |
| TACCCTGTTATACCAAGAGA+TGG | - | chr8.3:17402022-17402041 | None:intergenic | 40.0% | |
| TACTATGAGGTTGTCATGTC+TGG | + | chr8.3:17401008-17401027 | MS.gene48348:intron | 40.0% | |
| TCTTCAATACCATCGAAGGA+AGG | - | chr8.3:17402349-17402368 | None:intergenic | 40.0% | |
| TGATGTCAACAACCATGGAT+TGG | - | chr8.3:17400904-17400923 | None:intergenic | 40.0% | |
| TTCAGAAAAGACGCGTAAAG+AGG | + | chr8.3:17400429-17400448 | MS.gene48348:intron | 40.0% | |
| TTTATATCTTCATCCGCTCC+TGG | + | chr8.3:17402930-17402949 | MS.gene48348:CDS | 40.0% | |
| TTTCTATCGCAGCAATCACT+CGG | + | chr8.3:17400559-17400578 | MS.gene48348:CDS | 40.0% | |
| ! | ATTCACACTCTGTTTGGTGA+AGG | + | chr8.3:17400648-17400667 | MS.gene48348:intron | 40.0% |
| ! | CACTTCATGCTCATTTTCCA+TGG | - | chr8.3:17402982-17403001 | None:intergenic | 40.0% |
| ! | CTAAAGACCTTGAGTTTTCG+CGG | - | chr8.3:17400185-17400204 | None:intergenic | 40.0% |
| ! | TCTTGGTATAACAGGGTACT+TGG | + | chr8.3:17402024-17402043 | MS.gene48348:CDS | 40.0% |
| !! | CTTGGTTTTCATGTCAAAGG+GGG | + | chr8.3:17402042-17402061 | MS.gene48348:CDS | 40.0% |
| !!! | TTTTGGGGTTTCTGTTTGCT+GGG | + | chr8.3:17401310-17401329 | MS.gene48348:intron | 40.0% |
| AAACTCTGGCAGCATCTGAA+GGG | + | chr8.3:17401953-17401972 | MS.gene48348:intron | 45.0% | |
| AGGCCATCTCTTGGTATAAC+AGG | + | chr8.3:17402016-17402035 | MS.gene48348:CDS | 45.0% | |
| ATACCTTCAAACGTGGAGAC+TGG | - | chr8.3:17403100-17403119 | None:intergenic | 45.0% | |
| ATCTGAAGGGAGGTTGAATG+AGG | + | chr8.3:17401966-17401985 | MS.gene48348:CDS | 45.0% | |
| CAACAAACCGCGAAAACTCA+AGG | + | chr8.3:17400175-17400194 | MS.gene48348:CDS | 45.0% | |
| CAGCTCTTCAATACCATCGA+AGG | - | chr8.3:17402353-17402372 | None:intergenic | 45.0% | |
| CGCGAAAACTCAAGGTCTTT+AGG | + | chr8.3:17400183-17400202 | MS.gene48348:intron | 45.0% | |
| CTCTTCAACCTCGAGAAACT+TGG | - | chr8.3:17401376-17401395 | None:intergenic | 45.0% | |
| GATGCTGCCAGAGTTTCATA+TGG | - | chr8.3:17401949-17401968 | None:intergenic | 45.0% | |
| GGATGCTATTGCTTCTGCTA+AGG | + | chr8.3:17400471-17400490 | MS.gene48348:CDS | 45.0% | |
| GGCCATCTCTTGGTATAACA+GGG | + | chr8.3:17402017-17402036 | MS.gene48348:CDS | 45.0% | |
| GTATTCAAGAGGTTCGAACG+AGG | + | chr8.3:17400518-17400537 | MS.gene48348:CDS | 45.0% | |
| GTTTACTACATCTCTGGTGC+CGG | + | chr8.3:17401342-17401361 | MS.gene48348:intron | 45.0% | |
| TCACTTCTAACAGATGTGCC+AGG | - | chr8.3:17402951-17402970 | None:intergenic | 45.0% | |
| TCTCAACCAAGTGACTTCTC+GGG | + | chr8.3:17401400-17401419 | MS.gene48348:intron | 45.0% | |
| TCTGAAGGGAGGTTGAATGA+GGG | + | chr8.3:17401967-17401986 | MS.gene48348:CDS | 45.0% | |
| TTTACTACATCTCTGGTGCC+GGG | + | chr8.3:17401343-17401362 | MS.gene48348:intron | 45.0% | |
| ! | CTTCGATGGTATTGAAGAGC+TGG | + | chr8.3:17402351-17402370 | MS.gene48348:CDS | 45.0% |
| ! | TCTGTTTGCTGGGTGGTTAT+TGG | + | chr8.3:17401320-17401339 | MS.gene48348:intron | 45.0% |
| !!! | AGTTTTCGCGGTTTGTTGTG+CGG | - | chr8.3:17400173-17400192 | None:intergenic | 45.0% |
| !!! | GGTGGTTTTGATGGATTGGA+AGG | - | chr8.3:17400152-17400171 | None:intergenic | 45.0% |
| !!! | GTTTTGGGGTTTCTGTTTGC+TGG | + | chr8.3:17401309-17401328 | MS.gene48348:intron | 45.0% |
| !!! | TTGTTGTGCGGTGGTTTTGA+TGG | - | chr8.3:17400161-17400180 | None:intergenic | 45.0% |
| AAACACAGGAGGCCATCTCT+TGG | + | chr8.3:17402007-17402026 | MS.gene48348:CDS | 50.0% | |
| CGTTGTGAACCTTCCTTCGA+TGG | + | chr8.3:17402337-17402356 | MS.gene48348:CDS | 50.0% | |
| GAAACTCTGGCAGCATCTGA+AGG | + | chr8.3:17401952-17401971 | MS.gene48348:intron | 50.0% | |
| GCGGCATTTGCAGGAAAAAG+AGG | - | chr8.3:17400592-17400611 | None:intergenic | 50.0% | |
| GCGTAAAGAGGCTAAGCGAA+TGG | + | chr8.3:17400441-17400460 | MS.gene48348:CDS | 50.0% | |
| GCTTCTGCTAAGGCTAGAGT+TGG | + | chr8.3:17400481-17400500 | MS.gene48348:CDS | 50.0% | |
| GTCTCGAACCAAGTTTCTCG+AGG | + | chr8.3:17401365-17401384 | MS.gene48348:intron | 50.0% | |
| GTGTGATTTCTGCTTCGCAG+CGG | - | chr8.3:17400084-17400103 | None:intergenic | 50.0% | |
| TCTAACAGATGTGCCAGGAG+CGG | - | chr8.3:17402946-17402965 | None:intergenic | 50.0% | |
| TGTGATTTCTGCTTCGCAGC+GGG | - | chr8.3:17400083-17400102 | None:intergenic | 50.0% | |
| TTTCATGTCAAAGGGGGACG+TGG | + | chr8.3:17402048-17402067 | MS.gene48348:CDS | 50.0% | |
| ! | GAATTGACTTAGCGCCCGTT+TGG | + | chr8.3:17400677-17400696 | MS.gene48348:intron | 50.0% |
| ! | GAGAAACTTGGTTCGAGACC+CGG | - | chr8.3:17401364-17401383 | None:intergenic | 50.0% |
| ! | GATGCGGTAGCTCTGCATAT+TGG | + | chr8.3:17402498-17402517 | MS.gene48348:intron | 50.0% |
| !! | GGCTAAGCGAATGGCTTTGT+TGG | + | chr8.3:17400450-17400469 | MS.gene48348:CDS | 50.0% |
| !!! | GTGCGGTGGTTTTGATGGAT+TGG | - | chr8.3:17400156-17400175 | None:intergenic | 50.0% |
| ACTTCTCGGGAGACAGGCAT+TGG | + | chr8.3:17401413-17401432 | MS.gene48348:intron | 55.0% | |
| CAAGTGACTTCTCGGGAGAC+AGG | + | chr8.3:17401407-17401426 | MS.gene48348:intron | 55.0% | |
| CTGTCTCCCGAGAAGTCACT+TGG | - | chr8.3:17401409-17401428 | None:intergenic | 55.0% | |
| GACTTAGCGCCCGTTTGGAT+TGG | + | chr8.3:17400682-17400701 | MS.gene48348:intron | 55.0% | |
| GAGCATGAAGTGGAACGCTC+TGG | + | chr8.3:17402990-17403009 | MS.gene48348:CDS | 55.0% | |
| TCGCCAGTCTCCACGTTTGA+AGG | + | chr8.3:17403094-17403113 | MS.gene48348:CDS | 55.0% | |
| ! | TGGGGTTTCTGTTTGCTGGG+TGG | + | chr8.3:17401313-17401332 | MS.gene48348:intron | 55.0% |
| !! | TTCTGCTTCGCAGCGGGTTA+AGG | - | chr8.3:17400077-17400096 | None:intergenic | 55.0% |
| !! | TTTCGCGGTTTGTTGTGCGG+TGG | - | chr8.3:17400170-17400189 | None:intergenic | 55.0% |
| CTCTGGCAGCATCTGAAGGG+AGG | + | chr8.3:17401956-17401975 | MS.gene48348:intron | 60.0% | |
| GAGAAGATGGGGGAGGTGAG+AGG | - | chr8.3:17401919-17401938 | None:intergenic | 60.0% | |
| !! | TGCTTCGCAGCGGGTTAAGG+AGG | - | chr8.3:17400074-17400093 | None:intergenic | 60.0% |
| !! | GGAAGCGGCGAAAGCGTCGA+CGG | - | chr8.3:17400119-17400138 | None:intergenic | 65.0% |
| !! | CGGCGAAAGCGTCGACGGTG+TGG | - | chr8.3:17400114-17400133 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 17400058 | 17403121 | 17400058 | ID=MS.gene48348 |
| chr8.3 | mRNA | 17400058 | 17403121 | 17400058 | ID=MS.gene48348.t1;Parent=MS.gene48348 |
| chr8.3 | exon | 17400058 | 17400196 | 17400058 | ID=MS.gene48348.t1.exon1;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17400058 | 17400196 | 17400058 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| chr8.3 | exon | 17400280 | 17400345 | 17400280 | ID=MS.gene48348.t1.exon2;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17400280 | 17400345 | 17400280 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| chr8.3 | exon | 17400434 | 17400580 | 17400434 | ID=MS.gene48348.t1.exon3;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17400434 | 17400580 | 17400434 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| chr8.3 | exon | 17401965 | 17402069 | 17401965 | ID=MS.gene48348.t1.exon4;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17401965 | 17402069 | 17401965 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| chr8.3 | exon | 17402156 | 17402245 | 17402156 | ID=MS.gene48348.t1.exon5;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17402156 | 17402245 | 17402156 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| chr8.3 | exon | 17402332 | 17402454 | 17402332 | ID=MS.gene48348.t1.exon6;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17402332 | 17402454 | 17402332 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| chr8.3 | exon | 17402889 | 17403121 | 17402889 | ID=MS.gene48348.t1.exon7;Parent=MS.gene48348.t1 |
| chr8.3 | CDS | 17402889 | 17403121 | 17402889 | ID=cds.MS.gene48348.t1;Parent=MS.gene48348.t1 |
| Gene Sequence |
| Protein sequence |
