Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48745.t1 | XP_003605397.2 | 98.6 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 8.30E-245 | 855.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48745.t1 | Q9FKV1 | 72.8 | 449 | 97 | 3 | 1 | 443 | 3 | 432 | 2.9e-182 | 639.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48745.t1 | G7JKS8 | 98.6 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 6.0e-245 | 855.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067063 | MS.gene48745 | PPI |
| MS.gene48745 | MS.gene054624 | PPI |
| MS.gene48745 | MS.gene51840 | PPI |
| MS.gene24365 | MS.gene48745 | PPI |
| MS.gene48745 | MS.gene044004 | PPI |
| MS.gene019649 | MS.gene48745 | PPI |
| MS.gene48745 | MS.gene84825 | PPI |
| MS.gene48745 | MS.gene48483 | PPI |
| MS.gene48745 | MS.gene67091 | PPI |
| MS.gene48745 | MS.gene056796 | PPI |
| MS.gene013003 | MS.gene48745 | PPI |
| MS.gene48745 | MS.gene044005 | PPI |
| MS.gene48745 | MS.gene67151 | PPI |
| MS.gene57998 | MS.gene48745 | PPI |
| MS.gene48745 | MS.gene023903 | PPI |
| MS.gene48745 | MS.gene062762 | PPI |
| MS.gene48745 | MS.gene019648 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48745.t1 | MTR_4g030900 | 98.646 | 443 | 6 | 0 | 1 | 443 | 1 | 443 | 0.0 | 881 |
| MS.gene48745.t1 | MTR_7g077830 | 37.613 | 444 | 247 | 6 | 2 | 443 | 119 | 534 | 1.60e-92 | 290 |
| MS.gene48745.t1 | MTR_8g030600 | 36.486 | 444 | 252 | 5 | 2 | 443 | 173 | 588 | 6.00e-90 | 285 |
| MS.gene48745.t1 | MTR_3g463080 | 37.698 | 443 | 248 | 7 | 2 | 443 | 101 | 516 | 4.91e-87 | 275 |
| MS.gene48745.t1 | MTR_8g030600 | 35.838 | 346 | 203 | 4 | 2 | 345 | 173 | 501 | 7.80e-65 | 217 |
| MS.gene48745.t1 | MTR_4g116030 | 32.063 | 446 | 269 | 12 | 2 | 439 | 105 | 524 | 1.42e-62 | 211 |
| MS.gene48745.t1 | MTR_7g066780 | 30.839 | 441 | 278 | 6 | 4 | 442 | 91 | 506 | 8.19e-61 | 206 |
| MS.gene48745.t1 | MTR_5g069630 | 28.182 | 440 | 292 | 7 | 7 | 443 | 97 | 515 | 2.56e-51 | 181 |
| MS.gene48745.t1 | MTR_2g027710 | 42.424 | 165 | 94 | 1 | 231 | 395 | 71 | 234 | 8.74e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48745.t1 | AT5G44370 | 72.235 | 443 | 110 | 1 | 1 | 443 | 3 | 432 | 0.0 | 649 |
| MS.gene48745.t1 | AT4G00370 | 35.811 | 444 | 255 | 5 | 2 | 443 | 126 | 541 | 8.71e-89 | 280 |
| MS.gene48745.t1 | AT2G29650 | 35.666 | 443 | 257 | 6 | 2 | 443 | 97 | 512 | 9.04e-86 | 271 |
| MS.gene48745.t1 | AT2G29650 | 35.782 | 422 | 241 | 7 | 24 | 443 | 7 | 400 | 2.06e-80 | 254 |
| MS.gene48745.t1 | AT2G29650 | 35.731 | 417 | 238 | 7 | 29 | 443 | 2 | 390 | 5.37e-79 | 250 |
| MS.gene48745.t1 | AT5G20380 | 31.614 | 446 | 267 | 11 | 2 | 439 | 93 | 508 | 1.85e-61 | 208 |
| MS.gene48745.t1 | AT5G20380 | 31.614 | 446 | 267 | 11 | 2 | 439 | 145 | 560 | 4.71e-61 | 208 |
| MS.gene48745.t1 | AT2G38060 | 29.864 | 442 | 283 | 7 | 4 | 442 | 95 | 512 | 1.60e-58 | 200 |
| MS.gene48745.t1 | AT2G29650 | 35.535 | 318 | 188 | 5 | 2 | 318 | 97 | 398 | 4.36e-57 | 193 |
| MS.gene48745.t1 | AT3G46980 | 29.318 | 440 | 288 | 7 | 7 | 443 | 111 | 530 | 3.67e-55 | 192 |
| MS.gene48745.t1 | AT3G46980 | 29.318 | 440 | 288 | 7 | 7 | 443 | 111 | 530 | 4.47e-55 | 191 |
| MS.gene48745.t1 | AT3G46980 | 29.318 | 440 | 288 | 7 | 7 | 443 | 159 | 578 | 1.84e-54 | 191 |
| MS.gene48745.t1 | AT2G38060 | 29.443 | 377 | 249 | 6 | 4 | 377 | 95 | 457 | 1.29e-48 | 174 |
| MS.gene48745.t1 | AT3G46980 | 30.220 | 364 | 231 | 7 | 83 | 443 | 7 | 350 | 2.56e-45 | 161 |
| MS.gene48745.t1 | AT3G46980 | 30.220 | 364 | 231 | 7 | 83 | 443 | 7 | 350 | 2.56e-45 | 161 |
| MS.gene48745.t1 | AT3G46980 | 30.220 | 364 | 231 | 7 | 83 | 443 | 7 | 350 | 3.07e-45 | 161 |
| MS.gene48745.t1 | AT3G46980 | 30.220 | 364 | 231 | 7 | 83 | 443 | 7 | 350 | 3.07e-45 | 161 |
| MS.gene48745.t1 | AT3G46980 | 28.197 | 305 | 197 | 6 | 141 | 443 | 2 | 286 | 2.75e-29 | 116 |
Find 102 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACCAGCCTCCAACTTTC+TGG | 0.167095 | 4.4:-72820484 | None:intergenic |
| CCTAGTTTGGTTAAGTTTAA+AGG | 0.174452 | 4.4:+72819716 | MS.gene48745:CDS |
| ATGTATCTTGGTGCAGCTTT+TGG | 0.255363 | 4.4:+72819680 | MS.gene48745:CDS |
| AACGAGCAGTGACAAGAATT+AGG | 0.260054 | 4.4:-72819547 | None:intergenic |
| ATTGTTGGTGTTGATCTTAC+TGG | 0.272404 | 4.4:+72820415 | MS.gene48745:CDS |
| TTTGACTAGTTTGCCTGTTT+GGG | 0.291056 | 4.4:+72819961 | MS.gene48745:CDS |
| TTCAAATACTGCTGGTACTT+TGG | 0.293989 | 4.4:+72820387 | MS.gene48745:CDS |
| CGAAATAACCGCCGGGAACT+TGG | 0.309025 | 4.4:-72819433 | None:intergenic |
| GTCACTGCTCGTTTACTTGT+TGG | 0.315606 | 4.4:+72819557 | MS.gene48745:CDS |
| AATGTTGTTTCTACCTAGTT+TGG | 0.318339 | 4.4:+72819703 | MS.gene48745:CDS |
| GGCTGCCAAGGCGTCTGATT+TGG | 0.324835 | 4.4:+72820450 | MS.gene48745:CDS |
| TAAGTTAAGTCTTCATGAAA+TGG | 0.325737 | 4.4:+72820066 | MS.gene48745:CDS |
| CTTTGTTGATTGGTTGATTC+CGG | 0.329782 | 4.4:-72819369 | None:intergenic |
| AACACAAACATATTCAAATA+AGG | 0.331068 | 4.4:-72820106 | None:intergenic |
| TCACTGCTCGTTTACTTGTT+GGG | 0.333640 | 4.4:+72819558 | MS.gene48745:CDS |
| CTATCAATCTTCTTATTAAC+CGG | 0.341138 | 4.4:-72819854 | None:intergenic |
| GAAGATTGATAGACGGGTTT+CGG | 0.343350 | 4.4:+72819865 | MS.gene48745:CDS |
| TCCGGCAGCGTCGGCGGCGA+CGG | 0.343534 | 4.4:-72819351 | None:intergenic |
| CTTTGTATGTGTTGATGAAT+TGG | 0.350434 | 4.4:+72820017 | MS.gene48745:CDS |
| GCACCGGAAGCCGAACTCTT+AGG | 0.365889 | 4.4:-72819815 | None:intergenic |
| TACGCTTGTTCCCAAGTTCC+CGG | 0.371349 | 4.4:+72819422 | MS.gene48745:CDS |
| GGTACTTTGGCTGGTATTGT+TGG | 0.376276 | 4.4:+72820400 | MS.gene48745:CDS |
| TGCCGGTGAATCGTTATTGC+CGG | 0.387504 | 4.4:+72819835 | MS.gene48745:CDS |
| TAGACGGGTTTCGGATCTTA+AGG | 0.394543 | 4.4:+72819874 | MS.gene48745:CDS |
| ACGAGCAGTGACAAGAATTA+GGG | 0.402524 | 4.4:-72819546 | None:intergenic |
| AAACAGACCTAGATCTTTCA+TGG | 0.407378 | 4.4:-72819640 | None:intergenic |
| GGGTTTCGGATCTTAAGGTT+GGG | 0.411547 | 4.4:+72819879 | MS.gene48745:CDS |
| ACTACTAGTGGTATGTATCT+TGG | 0.423422 | 4.4:+72819668 | MS.gene48745:CDS |
| TGAAGGTAAGGAGAACTATA+AGG | 0.423725 | 4.4:-72819277 | None:intergenic |
| AAGAGTTCGGCTTCCGGTGC+CGG | 0.424410 | 4.4:+72819818 | MS.gene48745:CDS |
| GGTTATTTCGCCCAGAAAAT+CGG | 0.426214 | 4.4:+72819446 | MS.gene48745:CDS |
| GATCCTAAGAGTTCGGCTTC+CGG | 0.428196 | 4.4:+72819812 | MS.gene48745:CDS |
| AATACTGCTGGTACTTTGGC+TGG | 0.428585 | 4.4:+72820391 | MS.gene48745:CDS |
| GAATTGTACCCTTTGTTGAT+TGG | 0.433565 | 4.4:-72819379 | None:intergenic |
| GCTAAAACAGTATGAATTGA+AGG | 0.438231 | 4.4:-72819602 | None:intergenic |
| ATCTTTCGACTCCAGAAAGT+TGG | 0.441510 | 4.4:+72820473 | MS.gene48745:CDS |
| AAGTTAAGTCTTCATGAAAT+GGG | 0.453234 | 4.4:+72820067 | MS.gene48745:CDS |
| TAGTTCTGATCCTAAGAGTT+CGG | 0.454552 | 4.4:+72819805 | MS.gene48745:CDS |
| CCTTTAAACTTAACCAAACT+AGG | 0.454681 | 4.4:-72819716 | None:intergenic |
| CGGGTTTCGGATCTTAAGGT+TGG | 0.458137 | 4.4:+72819878 | MS.gene48745:CDS |
| TTACTTGTTGGGGTTGCTCA+AGG | 0.469936 | 4.4:+72819569 | MS.gene48745:CDS |
| AAGTGGGGTTGGAATTCCTT+GGG | 0.475309 | 4.4:+72819931 | MS.gene48745:CDS |
| TAATAAGAAGATTGATAGAC+GGG | 0.476333 | 4.4:+72819859 | MS.gene48745:CDS |
| TCCCACCCCATGAAAGATCT+AGG | 0.476934 | 4.4:+72819633 | MS.gene48745:CDS |
| CACTGCTCGTTTACTTGTTG+GGG | 0.481240 | 4.4:+72819559 | MS.gene48745:CDS |
| GGGGTGAGGCGAAGAAAAGT+GGG | 0.484396 | 4.4:+72819915 | MS.gene48745:CDS |
| ACCGTCGCCGCCGACGCTGC+CGG | 0.487605 | 4.4:+72819350 | MS.gene48745:CDS |
| CACATGTGAAGGACCATAAG+AGG | 0.488050 | 4.4:-72819496 | None:intergenic |
| TCTGTTTCTTTGACTACTAG+TGG | 0.491370 | 4.4:+72819656 | MS.gene48745:CDS |
| AGAACTATAAGGTAACGAAC+TGG | 0.502616 | 4.4:-72819266 | None:intergenic |
| GACTCCAGAAAGTTGGAGGC+TGG | 0.503695 | 4.4:+72820480 | MS.gene48745:CDS |
| TTTGCCTGTTTGGGCTATTG+TGG | 0.504221 | 4.4:+72819970 | MS.gene48745:CDS |
| GAAATAACCGCCGGGAACTT+GGG | 0.505954 | 4.4:-72819432 | None:intergenic |
| GATGTTGCTCCGAGATATGC+TGG | 0.507261 | 4.4:+72820349 | MS.gene48745:CDS |
| GGTTTCGGATCTTAAGGTTG+GGG | 0.509229 | 4.4:+72819880 | MS.gene48745:CDS |
| CAATAACGATTCACCGGCAC+CGG | 0.510862 | 4.4:-72819831 | None:intergenic |
| CTGATGTGCAGATGAAGGTA+AGG | 0.514191 | 4.4:-72819289 | None:intergenic |
| TTTCGACTCCAGAAAGTTGG+AGG | 0.514699 | 4.4:+72820476 | MS.gene48745:CDS |
| TTAACCACAATAGCCCAAAC+AGG | 0.515483 | 4.4:-72819974 | None:intergenic |
| AAAGTGGGGTTGGAATTCCT+TGG | 0.520233 | 4.4:+72819930 | MS.gene48745:CDS |
| ACCTAGATCTTTCATGGGGT+GGG | 0.521976 | 4.4:-72819634 | None:intergenic |
| CGGATTATTTGATTACGAGA+AGG | 0.522309 | 4.4:+72820152 | MS.gene48745:CDS |
| GAAGGGTTATGTCGGTGACT+AGG | 0.528281 | 4.4:+72820170 | MS.gene48745:CDS |
| TTGGTTGATTCCGGCAGCGT+CGG | 0.528660 | 4.4:-72819360 | None:intergenic |
| GGATTATTTGATTACGAGAA+GGG | 0.530464 | 4.4:+72820153 | MS.gene48745:CDS |
| GACCTAGATCTTTCATGGGG+TGG | 0.537966 | 4.4:-72819635 | None:intergenic |
| ATCACAATTCCAGCATATCT+CGG | 0.539201 | 4.4:-72820358 | None:intergenic |
| TTGTTGGTGTTGATCTTACT+GGG | 0.540874 | 4.4:+72820416 | MS.gene48745:CDS |
| CAAATAAGGCAACATCTTCG+AGG | 0.546929 | 4.4:-72820092 | None:intergenic |
| AAGATCCAAATCAGACGCCT+TGG | 0.548033 | 4.4:-72820455 | None:intergenic |
| GAGGCGAAGAAAAGTGGGGT+TGG | 0.550060 | 4.4:+72819920 | MS.gene48745:CDS |
| ACCATAAGAGGAATGAAAAG+AGG | 0.550822 | 4.4:-72819484 | None:intergenic |
| GTTGATTCCGGCAGCGTCGG+CGG | 0.552249 | 4.4:-72819357 | None:intergenic |
| AACCGGCAATAACGATTCAC+CGG | 0.554785 | 4.4:-72819837 | None:intergenic |
| TGGATTTGCAGTGAATCATA+TGG | 0.556660 | 4.4:+72820327 | MS.gene48745:CDS |
| ATTCTGTCCACATTCTACTA+CGG | 0.557355 | 4.4:+72819398 | MS.gene48745:CDS |
| GGCGGCGACGGTGTAAGCGA+TGG | 0.564498 | 4.4:-72819339 | None:intergenic |
| AACAGACCTAGATCTTTCAT+GGG | 0.565307 | 4.4:-72819639 | None:intergenic |
| GAAATTACTTGAGGCTGCCA+AGG | 0.567990 | 4.4:+72820438 | MS.gene48745:CDS |
| AGATATGCTGGAATTGTGAT+GGG | 0.572052 | 4.4:+72820361 | MS.gene48745:CDS |
| GGAATCAACCAATCAACAAA+GGG | 0.574368 | 4.4:+72819371 | MS.gene48745:CDS |
| TGGAAGAAGTGCACATGTGA+AGG | 0.577324 | 4.4:-72819507 | None:intergenic |
| GAGATATGCTGGAATTGTGA+TGG | 0.579577 | 4.4:+72820360 | MS.gene48745:CDS |
| GAATATTGGTGGTGTTGTTG+CGG | 0.581435 | 4.4:+72820132 | MS.gene48745:CDS |
| TTAATAAGAAGATTGATAGA+CGG | 0.582928 | 4.4:+72819858 | MS.gene48745:CDS |
| TTCTGGGCGAAATAACCGCC+GGG | 0.584077 | 4.4:-72819440 | None:intergenic |
| GATTACGAGAAGGGTTATGT+CGG | 0.589669 | 4.4:+72820162 | MS.gene48745:CDS |
| CGGAATCAACCAATCAACAA+AGG | 0.596783 | 4.4:+72819370 | MS.gene48745:CDS |
| TCTTACTGGGAAATTACTTG+AGG | 0.602899 | 4.4:+72820429 | MS.gene48745:CDS |
| CTAGTCAAAATCTTCACCCA+AGG | 0.605141 | 4.4:-72819947 | None:intergenic |
| TTTCTGGGCGAAATAACCGC+CGG | 0.614744 | 4.4:-72819441 | None:intergenic |
| CCACCCGAAGTTCTAAAACT+CGG | 0.621204 | 4.4:-72820253 | None:intergenic |
| ACAGACTGATGTGCAGATGA+AGG | 0.638296 | 4.4:-72819294 | None:intergenic |
| AGCGTAACCGTAGTAGAATG+TGG | 0.642404 | 4.4:-72819405 | None:intergenic |
| GTCTGTTACATAGAACGCGT+CGG | 0.646309 | 4.4:+72819311 | MS.gene48745:CDS |
| GGGTGAGGCGAAGAAAAGTG+GGG | 0.652496 | 4.4:+72819916 | MS.gene48745:CDS |
| TATTTCGCCCAGAAAATCGG+TGG | 0.664311 | 4.4:+72819449 | MS.gene48745:CDS |
| AGCCCTAATTCAAAATACGT+CGG | 0.677489 | 4.4:-72820043 | None:intergenic |
| GATATGCTGGAATTGTGATG+GGG | 0.698431 | 4.4:+72820362 | MS.gene48745:CDS |
| ATATGCTGGAATTGTGATGG+GGG | 0.729769 | 4.4:+72820363 | MS.gene48745:CDS |
| ACAGACCTAGATCTTTCATG+GGG | 0.746155 | 4.4:-72819638 | None:intergenic |
| GCTTGTTCCCAAGTTCCCGG+CGG | 0.780032 | 4.4:+72819425 | MS.gene48745:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACACAAACATATTCAAATA+AGG | - | chr4.4:72820109-72820128 | None:intergenic | 20.0% |
| !! | TTAATAAGAAGATTGATAGA+CGG | + | chr4.4:72819858-72819877 | MS.gene48745:CDS | 20.0% |
| ! | AAGTTAAGTCTTCATGAAAT+GGG | + | chr4.4:72820067-72820086 | MS.gene48745:CDS | 25.0% |
| ! | CTATCAATCTTCTTATTAAC+CGG | - | chr4.4:72819857-72819876 | None:intergenic | 25.0% |
| ! | TAAGTTAAGTCTTCATGAAA+TGG | + | chr4.4:72820066-72820085 | MS.gene48745:CDS | 25.0% |
| ! | TAATAAGAAGATTGATAGAC+GGG | + | chr4.4:72819859-72819878 | MS.gene48745:CDS | 25.0% |
| !! | ATGTTTGTGTTTTCGAATAT+TGG | + | chr4.4:72820118-72820137 | MS.gene48745:CDS | 25.0% |
| !!! | TTTGGTGTTTTATTTGGTTT+AGG | + | chr4.4:72819780-72819799 | MS.gene48745:CDS | 25.0% |
| CCTAGTTTGGTTAAGTTTAA+AGG | + | chr4.4:72819716-72819735 | MS.gene48745:CDS | 30.0% | |
| CCTTTAAACTTAACCAAACT+AGG | - | chr4.4:72819719-72819738 | None:intergenic | 30.0% | |
| CTAAAAACACATAAAAGTCC+CGG | - | chr4.4:72820517-72820536 | None:intergenic | 30.0% | |
| GCTAAAACAGTATGAATTGA+AGG | - | chr4.4:72819605-72819624 | None:intergenic | 30.0% | |
| GGATTATTTGATTACGAGAA+GGG | + | chr4.4:72820153-72820172 | MS.gene48745:CDS | 30.0% | |
| ! | AGAAAGTTTTTGAATACGGT+TGG | + | chr4.4:72820196-72820215 | MS.gene48745:CDS | 30.0% |
| ! | CTTTGTATGTGTTGATGAAT+TGG | + | chr4.4:72820017-72820036 | MS.gene48745:CDS | 30.0% |
| ! | GAAAGTTTTTGAATACGGTT+GGG | + | chr4.4:72820197-72820216 | MS.gene48745:CDS | 30.0% |
| ! | GACGAGAAAGTTTTTGAATA+CGG | + | chr4.4:72820192-72820211 | MS.gene48745:CDS | 30.0% |
| ! | TTTGTGTTTTCGAATATTGG+TGG | + | chr4.4:72820121-72820140 | MS.gene48745:CDS | 30.0% |
| !! | AATGTTGTTTCTACCTAGTT+TGG | + | chr4.4:72819703-72819722 | MS.gene48745:CDS | 30.0% |
| !! | TACCGACGTATTTTGAATTA+GGG | + | chr4.4:72820041-72820060 | MS.gene48745:CDS | 30.0% |
| !! | TTACCGACGTATTTTGAATT+AGG | + | chr4.4:72820040-72820059 | MS.gene48745:CDS | 30.0% |
| !!! | ACAAGAATTAGGGTTTTGTT+TGG | - | chr4.4:72819539-72819558 | None:intergenic | 30.0% |
| !!! | AGAGTTTTTTAGGGTTTGTT+TGG | + | chr4.4:72819762-72819781 | MS.gene48745:CDS | 30.0% |
| !!! | GGTTTGTTTGGTGTTTTATT+TGG | + | chr4.4:72819774-72819793 | MS.gene48745:CDS | 30.0% |
| !!! | GTATTCTTGTTGTTTTCTAC+CGG | + | chr4.4:72820544-72820563 | MS.gene48745:CDS | 30.0% |
| !!! | TATTCTTGTTGTTTTCTACC+GGG | + | chr4.4:72820545-72820564 | MS.gene48745:CDS | 30.0% |
| !!! | TCATACTGTTTTAGCTCAAT+GGG | + | chr4.4:72819610-72819629 | MS.gene48745:CDS | 30.0% |
| !!! | TTCATACTGTTTTAGCTCAA+TGG | + | chr4.4:72819609-72819628 | MS.gene48745:CDS | 30.0% |
| !!! | TTGTTGCTGAGAGTTTTTTA+GGG | + | chr4.4:72819753-72819772 | MS.gene48745:CDS | 30.0% |
| !!! | TTTATGTGTTTTTAGTTCGC+TGG | + | chr4.4:72820522-72820541 | MS.gene48745:CDS | 30.0% |
| !!! | TTTGTTGCTGAGAGTTTTTT+AGG | + | chr4.4:72819752-72819771 | MS.gene48745:CDS | 30.0% |
| AAACAGACCTAGATCTTTCA+TGG | - | chr4.4:72819643-72819662 | None:intergenic | 35.0% | |
| AACAGACCTAGATCTTTCAT+GGG | - | chr4.4:72819642-72819661 | None:intergenic | 35.0% | |
| ACCATAAGAGGAATGAAAAG+AGG | - | chr4.4:72819487-72819506 | None:intergenic | 35.0% | |
| ACTACTAGTGGTATGTATCT+TGG | + | chr4.4:72819668-72819687 | MS.gene48745:CDS | 35.0% | |
| AGAACTATAAGGTAACGAAC+TGG | - | chr4.4:72819269-72819288 | None:intergenic | 35.0% | |
| AGATATGCTGGAATTGTGAT+GGG | + | chr4.4:72820361-72820380 | MS.gene48745:CDS | 35.0% | |
| AGCCCTAATTCAAAATACGT+CGG | - | chr4.4:72820046-72820065 | None:intergenic | 35.0% | |
| ATCACAATTCCAGCATATCT+CGG | - | chr4.4:72820361-72820380 | None:intergenic | 35.0% | |
| ATTCTGTCCACATTCTACTA+CGG | + | chr4.4:72819398-72819417 | MS.gene48745:CDS | 35.0% | |
| CGGATTATTTGATTACGAGA+AGG | + | chr4.4:72820152-72820171 | MS.gene48745:CDS | 35.0% | |
| GAATTGTACCCTTTGTTGAT+TGG | - | chr4.4:72819382-72819401 | None:intergenic | 35.0% | |
| GGAATCAACCAATCAACAAA+GGG | + | chr4.4:72819371-72819390 | MS.gene48745:CDS | 35.0% | |
| TCAGCAACAAAAACAGATTG+AGG | - | chr4.4:72819743-72819762 | None:intergenic | 35.0% | |
| TCTTACTGGGAAATTACTTG+AGG | + | chr4.4:72820429-72820448 | MS.gene48745:CDS | 35.0% | |
| TGAAGGTAAGGAGAACTATA+AGG | - | chr4.4:72819280-72819299 | None:intergenic | 35.0% | |
| TGGATTTGCAGTGAATCATA+TGG | + | chr4.4:72820327-72820346 | MS.gene48745:CDS | 35.0% | |
| TTCAAATACTGCTGGTACTT+TGG | + | chr4.4:72820387-72820406 | MS.gene48745:CDS | 35.0% | |
| ! | CTTTGTTGATTGGTTGATTC+CGG | - | chr4.4:72819372-72819391 | None:intergenic | 35.0% |
| ! | TCCTCTTTTCATTCCTCTTA+TGG | + | chr4.4:72819483-72819502 | MS.gene48745:CDS | 35.0% |
| ! | TCTGTTTCTTTGACTACTAG+TGG | + | chr4.4:72819656-72819675 | MS.gene48745:CDS | 35.0% |
| !! | ATTGTTGGTGTTGATCTTAC+TGG | + | chr4.4:72820415-72820434 | MS.gene48745:CDS | 35.0% |
| !! | TAGTTCTGATCCTAAGAGTT+CGG | + | chr4.4:72819805-72819824 | MS.gene48745:CDS | 35.0% |
| !! | TTGTTGGTGTTGATCTTACT+GGG | + | chr4.4:72820416-72820435 | MS.gene48745:CDS | 35.0% |
| !! | TTTGACTAGTTTGCCTGTTT+GGG | + | chr4.4:72819961-72819980 | MS.gene48745:CDS | 35.0% |
| !!! | AGGGTTTTGTTTGGATCTAA+TGG | - | chr4.4:72819530-72819549 | None:intergenic | 35.0% |
| !!! | ATACCGAGTTTTAGAACTTC+GGG | + | chr4.4:72820250-72820269 | MS.gene48745:CDS | 35.0% |
| !!! | ATTCTTGTTGTTTTCTACCG+GGG | + | chr4.4:72820546-72820565 | MS.gene48745:CDS | 35.0% |
| !!! | GATACCGAGTTTTAGAACTT+CGG | + | chr4.4:72820249-72820268 | MS.gene48745:CDS | 35.0% |
| !!! | TTTTGACTAGTTTGCCTGTT+TGG | + | chr4.4:72819960-72819979 | MS.gene48745:CDS | 35.0% |
| AACGAGCAGTGACAAGAATT+AGG | - | chr4.4:72819550-72819569 | None:intergenic | 40.0% | |
| AAGGTTGGGGTTGAGAAAAA+TGG | + | chr4.4:72819893-72819912 | MS.gene48745:CDS | 40.0% | |
| ACAGACCTAGATCTTTCATG+GGG | - | chr4.4:72819641-72819660 | None:intergenic | 40.0% | |
| ACGAGCAGTGACAAGAATTA+GGG | - | chr4.4:72819549-72819568 | None:intergenic | 40.0% | |
| AGGTTGGGGTTGAGAAAAAT+GGG | + | chr4.4:72819894-72819913 | MS.gene48745:CDS | 40.0% | |
| ATATGCTGGAATTGTGATGG+GGG | + | chr4.4:72820363-72820382 | MS.gene48745:CDS | 40.0% | |
| ATCTTTCGACTCCAGAAAGT+TGG | + | chr4.4:72820473-72820492 | MS.gene48745:CDS | 40.0% | |
| CAAATAAGGCAACATCTTCG+AGG | - | chr4.4:72820095-72820114 | None:intergenic | 40.0% | |
| CGGAATCAACCAATCAACAA+AGG | + | chr4.4:72819370-72819389 | MS.gene48745:CDS | 40.0% | |
| CTAGTCAAAATCTTCACCCA+AGG | - | chr4.4:72819950-72819969 | None:intergenic | 40.0% | |
| GAGATATGCTGGAATTGTGA+TGG | + | chr4.4:72820360-72820379 | MS.gene48745:CDS | 40.0% | |
| GATATGCTGGAATTGTGATG+GGG | + | chr4.4:72820362-72820381 | MS.gene48745:CDS | 40.0% | |
| GATTACGAGAAGGGTTATGT+CGG | + | chr4.4:72820162-72820181 | MS.gene48745:CDS | 40.0% | |
| TCAATCAAAAATCCTCTCCC+CGG | - | chr4.4:72820566-72820585 | None:intergenic | 40.0% | |
| TCACTGCTCGTTTACTTGTT+GGG | + | chr4.4:72819558-72819577 | MS.gene48745:CDS | 40.0% | |
| TTAACCACAATAGCCCAAAC+AGG | - | chr4.4:72819977-72819996 | None:intergenic | 40.0% | |
| ! | GAAGATTGATAGACGGGTTT+CGG | + | chr4.4:72819865-72819884 | MS.gene48745:CDS | 40.0% |
| ! | GGTTATTTCGCCCAGAAAAT+CGG | + | chr4.4:72819446-72819465 | MS.gene48745:CDS | 40.0% |
| !! | ATGTATCTTGGTGCAGCTTT+TGG | + | chr4.4:72819680-72819699 | MS.gene48745:CDS | 40.0% |
| !! | GAATATTGGTGGTGTTGTTG+CGG | + | chr4.4:72820132-72820151 | MS.gene48745:CDS | 40.0% |
| !!! | TGGTGCTGTGTTTTGTTCTT+CGG | + | chr4.4:72820273-72820292 | MS.gene48745:CDS | 40.0% |
| !!! | TTTACGACCACCGATTTTCT+GGG | - | chr4.4:72819459-72819478 | None:intergenic | 40.0% |
| !!! | TTTTACGACCACCGATTTTC+TGG | - | chr4.4:72819460-72819479 | None:intergenic | 40.0% |
| AAAGTGGGGTTGGAATTCCT+TGG | + | chr4.4:72819930-72819949 | MS.gene48745:CDS | 45.0% | |
| AACCGGCAATAACGATTCAC+CGG | - | chr4.4:72819840-72819859 | None:intergenic | 45.0% | |
| AAGATCCAAATCAGACGCCT+TGG | - | chr4.4:72820458-72820477 | None:intergenic | 45.0% | |
| AAGTGGGGTTGGAATTCCTT+GGG | + | chr4.4:72819931-72819950 | MS.gene48745:CDS | 45.0% | |
| AATACTGCTGGTACTTTGGC+TGG | + | chr4.4:72820391-72820410 | MS.gene48745:CDS | 45.0% | |
| ACAGACTGATGTGCAGATGA+AGG | - | chr4.4:72819297-72819316 | None:intergenic | 45.0% | |
| ACCTAGATCTTTCATGGGGT+GGG | - | chr4.4:72819637-72819656 | None:intergenic | 45.0% | |
| AGCGTAACCGTAGTAGAATG+TGG | - | chr4.4:72819408-72819427 | None:intergenic | 45.0% | |
| ATGGGGGTTTCAAATACTGC+TGG | + | chr4.4:72820379-72820398 | MS.gene48745:CDS | 45.0% | |
| CACATGTGAAGGACCATAAG+AGG | - | chr4.4:72819499-72819518 | None:intergenic | 45.0% | |
| CTGATGTGCAGATGAAGGTA+AGG | - | chr4.4:72819292-72819311 | None:intergenic | 45.0% | |
| GAAATTACTTGAGGCTGCCA+AGG | + | chr4.4:72820438-72820457 | MS.gene48745:CDS | 45.0% | |
| GGGTTTCGGATCTTAAGGTT+GGG | + | chr4.4:72819879-72819898 | MS.gene48745:CDS | 45.0% | |
| GGTACTTTGGCTGGTATTGT+TGG | + | chr4.4:72820400-72820419 | MS.gene48745:CDS | 45.0% | |
| GGTTGGGGTTGAGAAAAATG+GGG | + | chr4.4:72819895-72819914 | MS.gene48745:CDS | 45.0% | |
| GGTTTCGGATCTTAAGGTTG+GGG | + | chr4.4:72819880-72819899 | MS.gene48745:CDS | 45.0% | |
| GTCACTGCTCGTTTACTTGT+TGG | + | chr4.4:72819557-72819576 | MS.gene48745:CDS | 45.0% | |
| GTCTGTTACATAGAACGCGT+CGG | + | chr4.4:72819311-72819330 | MS.gene48745:CDS | 45.0% | |
| GTTGGGGTTGAGAAAAATGG+GGG | + | chr4.4:72819896-72819915 | MS.gene48745:CDS | 45.0% | |
| TATTTCGCCCAGAAAATCGG+TGG | + | chr4.4:72819449-72819468 | MS.gene48745:CDS | 45.0% | |
| TTTCGACTCCAGAAAGTTGG+AGG | + | chr4.4:72820476-72820495 | MS.gene48745:CDS | 45.0% | |
| TTTGCCTGTTTGGGCTATTG+TGG | + | chr4.4:72819970-72819989 | MS.gene48745:CDS | 45.0% | |
| ! | AGGCTGGTGTTTTTCATTCC+GGG | + | chr4.4:72820496-72820515 | MS.gene48745:CDS | 45.0% |
| ! | CACTGCTCGTTTACTTGTTG+GGG | + | chr4.4:72819559-72819578 | MS.gene48745:CDS | 45.0% |
| ! | GAGGCTGGTGTTTTTCATTC+CGG | + | chr4.4:72820495-72820514 | MS.gene48745:CDS | 45.0% |
| ! | TAGACGGGTTTCGGATCTTA+AGG | + | chr4.4:72819874-72819893 | MS.gene48745:CDS | 45.0% |
| ! | TGGAAGAAGTGCACATGTGA+AGG | - | chr4.4:72819510-72819529 | None:intergenic | 45.0% |
| ! | TTACTTGTTGGGGTTGCTCA+AGG | + | chr4.4:72819569-72819588 | MS.gene48745:CDS | 45.0% |
| !! | CCACCCGAAGTTCTAAAACT+CGG | - | chr4.4:72820256-72820275 | None:intergenic | 45.0% |
| !! | TGCTGTGTTTTGTTCTTCGG+TGG | + | chr4.4:72820276-72820295 | MS.gene48745:CDS | 45.0% |
| !! | TGGCTTTTTAGCGCTTGGTA+GGG | + | chr4.4:72820303-72820322 | MS.gene48745:CDS | 45.0% |
| !! | TTGGCTTTTTAGCGCTTGGT+AGG | + | chr4.4:72820302-72820321 | MS.gene48745:CDS | 45.0% |
| AACACCAGCCTCCAACTTTC+TGG | - | chr4.4:72820487-72820506 | None:intergenic | 50.0% | |
| CAATAACGATTCACCGGCAC+CGG | - | chr4.4:72819834-72819853 | None:intergenic | 50.0% | |
| CGGGTTTCGGATCTTAAGGT+TGG | + | chr4.4:72819878-72819897 | MS.gene48745:CDS | 50.0% | |
| GAAATAACCGCCGGGAACTT+GGG | - | chr4.4:72819435-72819454 | None:intergenic | 50.0% | |
| GAAGGGTTATGTCGGTGACT+AGG | + | chr4.4:72820170-72820189 | MS.gene48745:CDS | 50.0% | |
| GACCTAGATCTTTCATGGGG+TGG | - | chr4.4:72819638-72819657 | None:intergenic | 50.0% | |
| GATCCTAAGAGTTCGGCTTC+CGG | + | chr4.4:72819812-72819831 | MS.gene48745:CDS | 50.0% | |
| GATGTTGCTCCGAGATATGC+TGG | + | chr4.4:72820349-72820368 | MS.gene48745:CDS | 50.0% | |
| GGTTGAGAAAAATGGGGGTG+AGG | + | chr4.4:72819901-72819920 | MS.gene48745:CDS | 50.0% | |
| TACGCTTGTTCCCAAGTTCC+CGG | + | chr4.4:72819422-72819441 | MS.gene48745:CDS | 50.0% | |
| TCCCACCCCATGAAAGATCT+AGG | + | chr4.4:72819633-72819652 | MS.gene48745:CDS | 50.0% | |
| TGCCGGTGAATCGTTATTGC+CGG | + | chr4.4:72819835-72819854 | MS.gene48745:CDS | 50.0% | |
| TTTCTGGGCGAAATAACCGC+CGG | - | chr4.4:72819444-72819463 | None:intergenic | 50.0% | |
| ! | TTTTGTTCTTCGGTGGCGCT+TGG | + | chr4.4:72820283-72820302 | MS.gene48745:CDS | 50.0% |
| !! | TTTTTAGCGCTTGGTAGGGC+TGG | + | chr4.4:72820307-72820326 | MS.gene48745:CDS | 50.0% |
| !!! | CCGAGTTTTAGAACTTCGGG+TGG | + | chr4.4:72820253-72820272 | MS.gene48745:CDS | 50.0% |
| !!! | TGTTGTTTTCTACCGGGGAG+AGG | + | chr4.4:72820551-72820570 | MS.gene48745:CDS | 50.0% |
| CGAAATAACCGCCGGGAACT+TGG | - | chr4.4:72819436-72819455 | None:intergenic | 55.0% | |
| GACTCCAGAAAGTTGGAGGC+TGG | + | chr4.4:72820480-72820499 | MS.gene48745:CDS | 55.0% | |
| GAGGCGAAGAAAAGTGGGGT+TGG | + | chr4.4:72819920-72819939 | MS.gene48745:CDS | 55.0% | |
| GGGGTGAGGCGAAGAAAAGT+GGG | + | chr4.4:72819915-72819934 | MS.gene48745:CDS | 55.0% | |
| GGGTGAGGCGAAGAAAAGTG+GGG | + | chr4.4:72819916-72819935 | MS.gene48745:CDS | 55.0% | |
| TTCTGGGCGAAATAACCGCC+GGG | - | chr4.4:72819443-72819462 | None:intergenic | 55.0% | |
| ! | TTGGTTGATTCCGGCAGCGT+CGG | - | chr4.4:72819363-72819382 | None:intergenic | 55.0% |
| !! | GCGCTTGGCTTTTTAGCGCT+TGG | + | chr4.4:72820298-72820317 | MS.gene48745:CDS | 55.0% |
| AAGAGTTCGGCTTCCGGTGC+CGG | + | chr4.4:72819818-72819837 | MS.gene48745:CDS | 60.0% | |
| GCACCGGAAGCCGAACTCTT+AGG | - | chr4.4:72819818-72819837 | None:intergenic | 60.0% | |
| GCTTGTTCCCAAGTTCCCGG+CGG | + | chr4.4:72819425-72819444 | MS.gene48745:CDS | 60.0% | |
| GGGGGTGAGGCGAAGAAAAG+TGG | + | chr4.4:72819914-72819933 | MS.gene48745:CDS | 60.0% | |
| ! | GGCTGCCAAGGCGTCTGATT+TGG | + | chr4.4:72820450-72820469 | MS.gene48745:CDS | 60.0% |
| ! | GTTGATTCCGGCAGCGTCGG+CGG | - | chr4.4:72819360-72819379 | None:intergenic | 65.0% |
| GGCGGCGACGGTGTAAGCGA+TGG | - | chr4.4:72819342-72819361 | None:intergenic | 70.0% | |
| ! | ACCGTCGCCGCCGACGCTGC+CGG | + | chr4.4:72819350-72819369 | MS.gene48745:CDS | 80.0% |
| !!! | TCCGGCAGCGTCGGCGGCGA+CGG | - | chr4.4:72819354-72819373 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72819254 | 72820585 | 72819254 | ID=MS.gene48745 |
| chr4.4 | mRNA | 72819254 | 72820585 | 72819254 | ID=MS.gene48745.t1;Parent=MS.gene48745 |
| chr4.4 | exon | 72819254 | 72820585 | 72819254 | ID=MS.gene48745.t1.exon1;Parent=MS.gene48745.t1 |
| chr4.4 | CDS | 72819254 | 72820585 | 72819254 | ID=cds.MS.gene48745.t1;Parent=MS.gene48745.t1 |
| Gene Sequence |
| Protein sequence |
