Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49638.t1 | XP_003613500.1 | 93.4 | 228 | 15 | 0 | 1 | 228 | 1 | 228 | 1.60E-119 | 438.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49638.t1 | Q9FUS9 | 55.7 | 219 | 96 | 1 | 1 | 219 | 1 | 218 | 7.0e-63 | 241.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49638.t1 | G7K8A6 | 93.4 | 228 | 15 | 0 | 1 | 228 | 1 | 228 | 1.2e-119 | 438.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene49638 | 0.810565 | 1.08E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene49638 | 0.82003 | 8.51E-53 | -1.69E-46 |
| MS.gene050076 | MS.gene49638 | 0.809002 | 2.35E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene49638 | 0.826096 | 3.27E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene49638 | 0.823502 | 1.34E-53 | -1.69E-46 |
| MS.gene052290 | MS.gene49638 | 0.81774 | 2.82E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene49638 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene49638 | 0.852496 | 4.44E-61 | -1.69E-46 |
| MS.gene055254 | MS.gene49638 | 0.811719 | 6.08E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene49638 | 0.878319 | 3.09E-69 | -1.69E-46 |
| MS.gene055422 | MS.gene49638 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene49638 | 0.810562 | 1.08E-50 | -1.69E-46 |
| MS.gene056314 | MS.gene49638 | 0.823065 | 1.69E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene49638 | 0.806844 | 6.75E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene49638 | 0.845902 | 3.04E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene49638 | 0.801098 | 1.06E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene49638 | 0.813557 | 2.41E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene49638 | 0.806997 | 6.27E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene49638 | 0.840314 | 9.37E-58 | -1.69E-46 |
| MS.gene059974 | MS.gene49638 | 0.80124 | 9.89E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene49638 | 0.815781 | 7.75E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene49638 | 0.815088 | 1.11E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49638.t1 | MTR_5g037380 | 93.421 | 228 | 15 | 0 | 1 | 228 | 1 | 228 | 1.13e-158 | 438 |
| MS.gene49638.t1 | MTR_8g061950 | 54.018 | 224 | 99 | 2 | 1 | 222 | 1 | 222 | 2.28e-82 | 245 |
| MS.gene49638.t1 | MTR_7g065740 | 45.249 | 221 | 110 | 4 | 1 | 218 | 1 | 213 | 2.15e-54 | 174 |
| MS.gene49638.t1 | MTR_7g065720 | 43.439 | 221 | 114 | 4 | 1 | 218 | 1 | 213 | 1.12e-53 | 172 |
| MS.gene49638.t1 | MTR_7g065660 | 42.273 | 220 | 117 | 3 | 1 | 218 | 1 | 212 | 3.40e-53 | 171 |
| MS.gene49638.t1 | MTR_7g065600 | 41.364 | 220 | 119 | 3 | 1 | 218 | 1 | 212 | 4.43e-51 | 166 |
| MS.gene49638.t1 | MTR_7g065750 | 42.661 | 218 | 114 | 4 | 1 | 215 | 1 | 210 | 8.34e-51 | 165 |
| MS.gene49638.t1 | MTR_2g070180 | 45.192 | 208 | 105 | 5 | 8 | 215 | 7 | 205 | 1.95e-50 | 164 |
| MS.gene49638.t1 | MTR_7g065270 | 41.818 | 220 | 118 | 3 | 1 | 218 | 1 | 212 | 8.26e-50 | 162 |
| MS.gene49638.t1 | MTR_4g019790 | 40.090 | 222 | 125 | 2 | 5 | 226 | 7 | 220 | 1.10e-49 | 162 |
| MS.gene49638.t1 | MTR_2g070150 | 43.396 | 212 | 111 | 4 | 3 | 214 | 2 | 204 | 1.37e-49 | 161 |
| MS.gene49638.t1 | MTR_1g090100 | 41.176 | 221 | 124 | 3 | 6 | 226 | 3 | 217 | 1.46e-49 | 161 |
| MS.gene49638.t1 | MTR_1g115195 | 41.981 | 212 | 118 | 2 | 5 | 216 | 3 | 209 | 1.50e-49 | 161 |
| MS.gene49638.t1 | MTR_7g065290 | 41.256 | 223 | 121 | 3 | 1 | 221 | 1 | 215 | 1.88e-49 | 161 |
| MS.gene49638.t1 | MTR_2g070110 | 41.256 | 223 | 121 | 4 | 4 | 226 | 3 | 215 | 2.96e-49 | 160 |
| MS.gene49638.t1 | MTR_3g099757 | 41.743 | 218 | 119 | 3 | 1 | 218 | 1 | 210 | 1.68e-48 | 159 |
| MS.gene49638.t1 | MTR_7g065590 | 40.455 | 220 | 121 | 3 | 1 | 218 | 1 | 212 | 2.81e-48 | 158 |
| MS.gene49638.t1 | MTR_4g019780 | 40.088 | 227 | 125 | 4 | 1 | 224 | 1 | 219 | 2.98e-48 | 158 |
| MS.gene49638.t1 | MTR_2g070070 | 39.910 | 223 | 125 | 4 | 4 | 226 | 3 | 216 | 4.97e-48 | 157 |
| MS.gene49638.t1 | MTR_7g065710 | 42.202 | 218 | 113 | 4 | 1 | 218 | 1 | 205 | 7.90e-48 | 157 |
| MS.gene49638.t1 | MTR_2g070200 | 41.014 | 217 | 119 | 4 | 3 | 218 | 2 | 210 | 8.96e-48 | 157 |
| MS.gene49638.t1 | MTR_1g090060 | 40.187 | 214 | 122 | 3 | 5 | 218 | 3 | 210 | 1.35e-47 | 157 |
| MS.gene49638.t1 | MTR_2g070060 | 39.013 | 223 | 127 | 3 | 4 | 226 | 3 | 216 | 1.76e-47 | 156 |
| MS.gene49638.t1 | MTR_2g070130 | 42.727 | 220 | 117 | 5 | 3 | 222 | 2 | 212 | 1.84e-47 | 156 |
| MS.gene49638.t1 | MTR_7g065265 | 41.364 | 220 | 119 | 3 | 1 | 218 | 1 | 212 | 2.06e-47 | 156 |
| MS.gene49638.t1 | MTR_7g065630 | 39.111 | 225 | 125 | 3 | 2 | 226 | 22 | 234 | 4.05e-47 | 155 |
| MS.gene49638.t1 | MTR_6g080440 | 43.564 | 202 | 106 | 3 | 17 | 218 | 15 | 208 | 7.10e-47 | 155 |
| MS.gene49638.t1 | MTR_1g090090 | 39.171 | 217 | 120 | 4 | 5 | 218 | 3 | 210 | 7.43e-47 | 155 |
| MS.gene49638.t1 | MTR_7g065640 | 39.091 | 220 | 106 | 4 | 1 | 218 | 1 | 194 | 8.92e-47 | 154 |
| MS.gene49638.t1 | MTR_1g090070 | 38.222 | 225 | 128 | 5 | 5 | 226 | 9 | 225 | 9.09e-47 | 154 |
| MS.gene49638.t1 | MTR_2g070210 | 42.922 | 219 | 114 | 5 | 4 | 220 | 3 | 212 | 1.43e-46 | 154 |
| MS.gene49638.t1 | MTR_7g065260 | 43.192 | 213 | 109 | 5 | 1 | 210 | 8 | 211 | 1.41e-45 | 152 |
| MS.gene49638.t1 | MTR_8g087425 | 38.073 | 218 | 127 | 2 | 1 | 218 | 1 | 210 | 2.45e-45 | 150 |
| MS.gene49638.t1 | MTR_7g065230 | 41.038 | 212 | 110 | 5 | 1 | 210 | 1 | 199 | 6.13e-45 | 149 |
| MS.gene49638.t1 | MTR_2g070140 | 41.951 | 205 | 110 | 4 | 18 | 222 | 1 | 196 | 7.39e-45 | 149 |
| MS.gene49638.t1 | MTR_8g087410 | 37.443 | 219 | 129 | 3 | 1 | 219 | 2 | 212 | 9.51e-45 | 149 |
| MS.gene49638.t1 | MTR_5g040430 | 36.744 | 215 | 132 | 3 | 3 | 216 | 5 | 216 | 9.93e-45 | 149 |
| MS.gene49638.t1 | MTR_3g467430 | 40.000 | 220 | 123 | 4 | 1 | 220 | 5 | 215 | 1.08e-44 | 149 |
| MS.gene49638.t1 | MTR_3g467420 | 40.991 | 222 | 116 | 5 | 2 | 220 | 6 | 215 | 1.57e-44 | 149 |
| MS.gene49638.t1 | MTR_7g065680 | 40.090 | 222 | 121 | 3 | 5 | 226 | 7 | 216 | 7.37e-44 | 147 |
| MS.gene49638.t1 | MTR_1g090150 | 39.815 | 216 | 119 | 4 | 5 | 218 | 3 | 209 | 3.06e-43 | 145 |
| MS.gene49638.t1 | MTR_7g065700 | 40.476 | 210 | 113 | 4 | 5 | 214 | 7 | 204 | 8.08e-43 | 144 |
| MS.gene49638.t1 | MTR_4g059730 | 37.273 | 220 | 130 | 4 | 4 | 222 | 3 | 215 | 3.09e-42 | 142 |
| MS.gene49638.t1 | MTR_2g070120 | 38.140 | 215 | 124 | 4 | 4 | 218 | 3 | 208 | 1.16e-40 | 139 |
| MS.gene49638.t1 | MTR_8g056940 | 45.178 | 197 | 93 | 6 | 3 | 196 | 2 | 186 | 1.43e-40 | 138 |
| MS.gene49638.t1 | MTR_5g076900 | 37.156 | 218 | 126 | 5 | 4 | 220 | 5 | 212 | 4.38e-40 | 137 |
| MS.gene49638.t1 | MTR_4g124130 | 38.249 | 217 | 124 | 7 | 4 | 219 | 3 | 210 | 1.86e-37 | 130 |
| MS.gene49638.t1 | MTR_0186s0030 | 47.586 | 145 | 67 | 4 | 3 | 144 | 2 | 140 | 8.46e-32 | 113 |
| MS.gene49638.t1 | MTR_5g037390 | 73.973 | 73 | 19 | 0 | 29 | 101 | 11 | 83 | 1.42e-30 | 108 |
| MS.gene49638.t1 | MTR_2g072120 | 59.091 | 66 | 25 | 1 | 49 | 114 | 2 | 65 | 8.17e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49638.t1 | AT1G10360 | 55.708 | 219 | 96 | 1 | 1 | 219 | 1 | 218 | 6.39e-81 | 241 |
| MS.gene49638.t1 | AT1G10370 | 53.604 | 222 | 102 | 1 | 1 | 222 | 1 | 221 | 6.00e-78 | 234 |
| MS.gene49638.t1 | AT1G59700 | 50.698 | 215 | 104 | 2 | 5 | 218 | 6 | 219 | 3.43e-75 | 227 |
| MS.gene49638.t1 | AT1G59670 | 47.907 | 215 | 110 | 2 | 5 | 218 | 6 | 219 | 5.64e-69 | 211 |
| MS.gene49638.t1 | AT1G27130 | 47.748 | 222 | 111 | 3 | 1 | 219 | 1 | 220 | 5.75e-65 | 201 |
| MS.gene49638.t1 | AT1G27140 | 46.606 | 221 | 112 | 3 | 1 | 217 | 1 | 219 | 1.83e-60 | 190 |
| MS.gene49638.t1 | AT1G69920 | 44.545 | 220 | 118 | 2 | 2 | 219 | 31 | 248 | 6.77e-60 | 189 |
| MS.gene49638.t1 | AT1G69930 | 44.860 | 214 | 116 | 1 | 6 | 219 | 13 | 224 | 1.69e-59 | 187 |
| MS.gene49638.t1 | AT3G09270 | 39.640 | 222 | 126 | 4 | 6 | 226 | 7 | 221 | 1.93e-48 | 159 |
| MS.gene49638.t1 | AT2G29420 | 36.986 | 219 | 130 | 2 | 3 | 221 | 7 | 217 | 1.80e-47 | 156 |
| MS.gene49638.t1 | AT2G29490 | 38.222 | 225 | 128 | 5 | 4 | 226 | 6 | 221 | 1.34e-46 | 154 |
| MS.gene49638.t1 | AT1G78340 | 41.176 | 221 | 117 | 4 | 4 | 222 | 3 | 212 | 2.19e-45 | 150 |
| MS.gene49638.t1 | AT1G78320 | 42.991 | 214 | 113 | 4 | 4 | 217 | 3 | 207 | 1.28e-44 | 149 |
| MS.gene49638.t1 | AT1G78380 | 40.741 | 216 | 119 | 4 | 4 | 219 | 3 | 209 | 2.70e-44 | 148 |
| MS.gene49638.t1 | AT1G78370 | 38.318 | 214 | 119 | 4 | 8 | 219 | 7 | 209 | 4.38e-44 | 147 |
| MS.gene49638.t1 | AT2G29470 | 36.323 | 223 | 132 | 4 | 6 | 226 | 8 | 222 | 6.38e-44 | 147 |
| MS.gene49638.t1 | AT1G17170 | 40.000 | 215 | 119 | 3 | 4 | 218 | 3 | 207 | 3.78e-43 | 145 |
| MS.gene49638.t1 | AT1G17190 | 40.090 | 222 | 124 | 5 | 1 | 222 | 1 | 213 | 3.57e-42 | 142 |
| MS.gene49638.t1 | AT1G17180 | 40.000 | 220 | 117 | 7 | 3 | 219 | 2 | 209 | 6.36e-42 | 142 |
| MS.gene49638.t1 | AT2G29480 | 37.500 | 216 | 120 | 6 | 6 | 217 | 8 | 212 | 2.16e-41 | 140 |
| MS.gene49638.t1 | AT1G78360 | 39.908 | 218 | 117 | 5 | 8 | 222 | 7 | 213 | 3.83e-41 | 140 |
| MS.gene49638.t1 | AT1G53680 | 39.815 | 216 | 121 | 5 | 8 | 222 | 10 | 217 | 2.69e-40 | 138 |
| MS.gene49638.t1 | AT3G43800 | 37.333 | 225 | 130 | 5 | 1 | 222 | 1 | 217 | 5.06e-40 | 137 |
| MS.gene49638.t1 | AT2G29450 | 36.607 | 224 | 134 | 3 | 4 | 226 | 5 | 221 | 6.73e-40 | 137 |
| MS.gene49638.t1 | AT2G29460 | 35.000 | 220 | 126 | 5 | 4 | 218 | 6 | 213 | 2.27e-39 | 135 |
| MS.gene49638.t1 | AT2G29440 | 36.842 | 228 | 134 | 5 | 1 | 226 | 1 | 220 | 3.77e-38 | 132 |
| MS.gene49638.t1 | AT5G62480 | 35.874 | 223 | 126 | 4 | 4 | 217 | 7 | 221 | 1.42e-37 | 131 |
| MS.gene49638.t1 | AT1G74590 | 32.701 | 211 | 139 | 2 | 8 | 218 | 10 | 217 | 2.25e-36 | 128 |
| MS.gene49638.t1 | AT1G78320 | 35.714 | 210 | 99 | 4 | 8 | 217 | 7 | 180 | 5.87e-28 | 105 |
| MS.gene49638.t1 | AT5G62480 | 29.148 | 223 | 114 | 4 | 4 | 217 | 7 | 194 | 4.83e-22 | 90.5 |
| MS.gene49638.t1 | AT5G62480 | 28.700 | 223 | 116 | 4 | 4 | 217 | 7 | 195 | 1.14e-21 | 89.4 |
| MS.gene49638.t1 | AT2G02380 | 41.346 | 104 | 51 | 5 | 6 | 105 | 12 | 109 | 6.24e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAGCCATTGCTAGATTT+TGG | 0.154404 | 5.1:-28167982 | MS.gene49638:CDS |
| TCCACAAGTTTATCAGTTTC+TGG | 0.176738 | 5.1:+28166736 | None:intergenic |
| TACAAATGACTTAAAGCTTT+TGG | 0.189237 | 5.1:-28168257 | MS.gene49638:CDS |
| GGCTTTGTTGATATTGCTTT+TGG | 0.238595 | 5.1:-28166889 | MS.gene49638:CDS |
| TTGAATATATTGATGAAGTT+TGG | 0.240973 | 5.1:-28168048 | MS.gene49638:CDS |
| AGGGTTAAAGAGAAATTTAC+TGG | 0.266113 | 5.1:-28166847 | MS.gene49638:CDS |
| CTGAAGAAACAAATCACTTT+TGG | 0.266212 | 5.1:+28168144 | None:intergenic |
| AAACTCCTGCTTTGGTGAAA+TGG | 0.269767 | 5.1:-28166801 | MS.gene49638:CDS |
| AAAATCCCAGTTCTTATTCA+TGG | 0.282397 | 5.1:-28168103 | MS.gene49638:CDS |
| TGCCCTTTCAATCAAAGGTT+TGG | 0.302670 | 5.1:-28168197 | MS.gene49638:CDS |
| AACTCCTGCTTTGGTGAAAT+GGG | 0.393736 | 5.1:-28166800 | MS.gene49638:CDS |
| TTATCTCCATGAATAAGAAC+TGG | 0.399241 | 5.1:+28168097 | None:intergenic |
| TGCTGCTGATCCTGCTGTGA+AGG | 0.418005 | 5.1:-28166767 | MS.gene49638:CDS |
| ATTTGTGCCCTCACTGCAAA+TGG | 0.420611 | 5.1:+28168220 | None:intergenic |
| AATCCAAACCTTTGATTGAA+AGG | 0.422743 | 5.1:+28168194 | None:intergenic |
| ATCCAAACCTTTGATTGAAA+GGG | 0.436790 | 5.1:+28168195 | None:intergenic |
| CAAATTGCCCTTTCAATCAA+AGG | 0.440999 | 5.1:-28168202 | MS.gene49638:CDS |
| GCATTTGAAGGAAGGATTGA+GGG | 0.446813 | 5.1:+28168010 | None:intergenic |
| CTGTACAATTCCCTACGAAA+TGG | 0.454126 | 5.1:-28167039 | MS.gene49638:CDS |
| GTTCAGTCCATTTGCAGTGA+GGG | 0.459556 | 5.1:-28168227 | MS.gene49638:CDS |
| AGCAGAAGTGCTTGTGAGGT+TGG | 0.466597 | 5.1:-28166968 | MS.gene49638:CDS |
| TATTATTGCAGATTCACAAA+TGG | 0.479491 | 5.1:+28168072 | None:intergenic |
| AGCAAATAAACCATTTCGTA+GGG | 0.493313 | 5.1:+28167029 | None:intergenic |
| TCAGCCCATTTCACCAAAGC+AGG | 0.493696 | 5.1:+28166796 | None:intergenic |
| ATGCTATTTGAGTTGGTTGA+GGG | 0.498921 | 5.1:-28166866 | MS.gene49638:CDS |
| GAGCAAATAAACCATTTCGT+AGG | 0.505314 | 5.1:+28167028 | None:intergenic |
| AGCATTTGAAGGAAGGATTG+AGG | 0.510266 | 5.1:+28168009 | None:intergenic |
| GATGCTATTTGAGTTGGTTG+AGG | 0.515089 | 5.1:-28166867 | MS.gene49638:CDS |
| AGAGAAATTTACTGGAGAGA+AGG | 0.518055 | 5.1:-28166839 | MS.gene49638:CDS |
| GCTGCTGATCCTGCTGTGAA+GGG | 0.518550 | 5.1:-28166766 | MS.gene49638:CDS |
| GGTAGAATTCCCTTCACAGC+AGG | 0.524477 | 5.1:+28166757 | None:intergenic |
| GCTCGATCATAAGCATTTGA+AGG | 0.528885 | 5.1:+28167998 | None:intergenic |
| TAATACCTTGTCATCGATGT+AGG | 0.530847 | 5.1:+28167955 | None:intergenic |
| GATCATAAGCATTTGAAGGA+AGG | 0.533721 | 5.1:+28168002 | None:intergenic |
| AACAGCAGCAGCTATAGCTA+AGG | 0.547314 | 5.1:+28166708 | None:intergenic |
| GAACAAGAGCAGTGGAGGAA+AGG | 0.557028 | 5.1:-28166935 | MS.gene49638:CDS |
| TATCTCACATTCCTCTACTT+AGG | 0.557566 | 5.1:+28166685 | None:intergenic |
| ACCAGAAACTGATAAACTTG+TGG | 0.558982 | 5.1:-28166737 | MS.gene49638:CDS |
| GGTTCAGTCCATTTGCAGTG+AGG | 0.592150 | 5.1:-28168228 | MS.gene49638:CDS |
| TATCTCCATGAATAAGAACT+GGG | 0.597443 | 5.1:+28168098 | None:intergenic |
| CTGCTGCTGTTCCTAAGTAG+AGG | 0.599645 | 5.1:-28166696 | None:intergenic |
| GTATTGAACAAGAGCAGTGG+AGG | 0.626763 | 5.1:-28166940 | MS.gene49638:CDS |
| GGTAGCCCAAAATCTAGCAA+TGG | 0.641759 | 5.1:+28167976 | None:intergenic |
| AACTAGCAGAAGTGCTTGTG+AGG | 0.644124 | 5.1:-28166972 | MS.gene49638:CDS |
| GATGTATTGAACAAGAGCAG+TGG | 0.660264 | 5.1:-28166943 | MS.gene49638:CDS |
| GGCTACCTACATCGATGACA+AGG | 0.662536 | 5.1:-28167960 | MS.gene49638:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTTTATTTTTTT+TGG | - | chr5.1:28167109-28167128 | MS.gene49638:intron | 0.0% |
| !! | AAATTAAAAACCAATATATT+TGG | + | chr5.1:28167099-28167118 | None:intergenic | 10.0% |
| !!! | TTTATTATTGTTTTTTTTAC+AGG | - | chr5.1:28167175-28167194 | MS.gene49638:intron | 10.0% |
| !! | ATAAAATCAATTATTCTACA+CGG | - | chr5.1:28167281-28167300 | MS.gene49638:intron | 15.0% |
| !! | CAACCTTTAATTATATTAGA+AGG | + | chr5.1:28167309-28167328 | None:intergenic | 20.0% |
| !! | CTAAAGAATAAATCCTAAAT+TGG | - | chr5.1:28167519-28167538 | MS.gene49638:intron | 20.0% |
| !! | GTACCTTCTAATATAATTAA+AGG | - | chr5.1:28167303-28167322 | MS.gene49638:intron | 20.0% |
| !! | TAAACCAAATATTTGTATTC+TGG | - | chr5.1:28167475-28167494 | MS.gene49638:intron | 20.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | - | chr5.1:28166913-28166932 | MS.gene49638:CDS | 20.0% |
| !!! | ATTTGGTTTAAATGTGTATT+TGG | + | chr5.1:28167465-28167484 | None:intergenic | 20.0% |
| !!! | CAATTTAGGATTTATTCTTT+AGG | + | chr5.1:28167521-28167540 | None:intergenic | 20.0% |
| !!! | TGTGATGAAATTTTAACATA+AGG | - | chr5.1:28167823-28167842 | MS.gene49638:intron | 20.0% |
| ! | AAGACCAGAATACAAATATT+TGG | + | chr5.1:28167482-28167501 | None:intergenic | 25.0% |
| ! | TAAGGTTAGTAAAATGAATG+AGG | + | chr5.1:28167041-28167060 | None:intergenic | 25.0% |
| ! | TAATCCTAAAAATCTCACTA+AGG | + | chr5.1:28167059-28167078 | None:intergenic | 25.0% |
| ! | TATCACTCAATATGATATAG+TGG | + | chr5.1:28167858-28167877 | None:intergenic | 25.0% |
| ! | TATTATTGCAGATTCACAAA+TGG | + | chr5.1:28166892-28166911 | None:intergenic | 25.0% |
| ! | TTTGTATCTTGTAAGAGTAA+AGG | - | chr5.1:28167707-28167726 | MS.gene49638:intron | 25.0% |
| !! | ACAAATGACTTAAAGCTTTT+GGG | - | chr5.1:28166705-28166724 | MS.gene49638:CDS | 25.0% |
| !! | TACAAATGACTTAAAGCTTT+TGG | - | chr5.1:28166704-28166723 | MS.gene49638:CDS | 25.0% |
| !!! | AGTGATATTATTTCTGCTTT+TGG | - | chr5.1:28167871-28167890 | MS.gene49638:intron | 25.0% |
| AAAATCCCAGTTCTTATTCA+TGG | - | chr5.1:28166858-28166877 | MS.gene49638:CDS | 30.0% | |
| AACATGGATACATAACAACA+TGG | - | chr5.1:28167347-28167366 | MS.gene49638:intron | 30.0% | |
| AATCCAAACCTTTGATTGAA+AGG | + | chr5.1:28166770-28166789 | None:intergenic | 30.0% | |
| ACTTTGACATTAGCCAATTT+AGG | + | chr5.1:28167535-28167554 | None:intergenic | 30.0% | |
| AGCAAATAAACCATTTCGTA+GGG | + | chr5.1:28167935-28167954 | None:intergenic | 30.0% | |
| AGGGTTAAAGAGAAATTTAC+TGG | - | chr5.1:28168114-28168133 | MS.gene49638:CDS | 30.0% | |
| ATCCAAACCTTTGATTGAAA+GGG | + | chr5.1:28166769-28166788 | None:intergenic | 30.0% | |
| ATTCCTTTCAATATGAGTGA+AGG | + | chr5.1:28167263-28167282 | None:intergenic | 30.0% | |
| TATCTCCATGAATAAGAACT+GGG | + | chr5.1:28166866-28166885 | None:intergenic | 30.0% | |
| TTATCTCCATGAATAAGAAC+TGG | + | chr5.1:28166867-28166886 | None:intergenic | 30.0% | |
| TTGTGTCTCTCCAAATATAT+TGG | - | chr5.1:28167086-28167105 | MS.gene49638:intron | 30.0% | |
| ! | AAAGTGTTTCAGATCTTCTT+AGG | + | chr5.1:28167677-28167696 | None:intergenic | 30.0% |
| ! | CTAACCTTAGTGAGATTTTT+AGG | - | chr5.1:28167052-28167071 | MS.gene49638:intron | 30.0% |
| ! | CTGAAGAAACAAATCACTTT+TGG | + | chr5.1:28166820-28166839 | None:intergenic | 30.0% |
| ! | CTTTACAAGTCAATTTTGTG+CGG | - | chr5.1:28167775-28167794 | MS.gene49638:intron | 30.0% |
| !!! | ACTGGGATTTTTTTGTAAAC+AGG | + | chr5.1:28166849-28166868 | None:intergenic | 30.0% |
| !!! | CTGGGATTTTTTTGTAAACA+GGG | + | chr5.1:28166848-28166867 | None:intergenic | 30.0% |
| !!! | GATTTTTTTGTAAACAGGGT+TGG | + | chr5.1:28166844-28166863 | None:intergenic | 30.0% |
| AAAGTCCCATTGTAACTGTA+GGG | - | chr5.1:28167550-28167569 | MS.gene49638:intron | 35.0% | |
| ACCAGAAACTGATAAACTTG+TGG | - | chr5.1:28168224-28168243 | MS.gene49638:CDS | 35.0% | |
| AGAGAAATTTACTGGAGAGA+AGG | - | chr5.1:28168122-28168141 | MS.gene49638:CDS | 35.0% | |
| AGAGAGACTAAAAGCAGAAA+CGG | - | chr5.1:28167426-28167445 | MS.gene49638:intron | 35.0% | |
| CAAATTGCCCTTTCAATCAA+AGG | - | chr5.1:28166759-28166778 | MS.gene49638:CDS | 35.0% | |
| GAGCAAATAAACCATTTCGT+AGG | + | chr5.1:28167936-28167955 | None:intergenic | 35.0% | |
| GATCATAAGCATTTGAAGGA+AGG | + | chr5.1:28166962-28166981 | None:intergenic | 35.0% | |
| TAATACCTTGTCATCGATGT+AGG | + | chr5.1:28167009-28167028 | None:intergenic | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | + | chr5.1:28168228-28168247 | None:intergenic | 35.0% | |
| TGAAACAAAAACTCCTGCTT+TGG | - | chr5.1:28168152-28168171 | MS.gene49638:CDS | 35.0% | |
| ! | AATGACTTAAAGCTTTTGGG+TGG | - | chr5.1:28166708-28166727 | MS.gene49638:CDS | 35.0% |
| !! | ATGCTATTTGAGTTGGTTGA+GGG | - | chr5.1:28168095-28168114 | MS.gene49638:CDS | 35.0% |
| !! | CTTTTGGATGCTATTTGAGT+TGG | - | chr5.1:28168088-28168107 | MS.gene49638:CDS | 35.0% |
| !! | CTTTTTGGAGGAGAGAAAAT+TGG | - | chr5.1:28168051-28168070 | MS.gene49638:CDS | 35.0% |
| !!! | GGCTTTGTTGATATTGCTTT+TGG | - | chr5.1:28168072-28168091 | MS.gene49638:CDS | 35.0% |
| !!! | GGTGCATGTTTTTTGCAATT+GGG | - | chr5.1:28167892-28167911 | MS.gene49638:intron | 35.0% |
| !!! | TGGTGCATGTTTTTTGCAAT+TGG | - | chr5.1:28167891-28167910 | MS.gene49638:intron | 35.0% |
| AAACTCCTGCTTTGGTGAAA+TGG | - | chr5.1:28168160-28168179 | MS.gene49638:CDS | 40.0% | |
| AACTCCTGCTTTGGTGAAAT+GGG | - | chr5.1:28168161-28168180 | MS.gene49638:CDS | 40.0% | |
| AAGTCCCATTGTAACTGTAG+GGG | - | chr5.1:28167551-28167570 | MS.gene49638:intron | 40.0% | |
| ACTTACCCCTACAGTTACAA+TGG | + | chr5.1:28167559-28167578 | None:intergenic | 40.0% | |
| AGCATTTGAAGGAAGGATTG+AGG | + | chr5.1:28166955-28166974 | None:intergenic | 40.0% | |
| CAAAGTCCCATTGTAACTGT+AGG | - | chr5.1:28167549-28167568 | MS.gene49638:intron | 40.0% | |
| CGAGCTAGAACATAACAACA+TGG | - | chr5.1:28167331-28167350 | MS.gene49638:intron | 40.0% | |
| CTGTACAATTCCCTACGAAA+TGG | - | chr5.1:28167922-28167941 | MS.gene49638:intron | 40.0% | |
| CTTACCCCTACAGTTACAAT+GGG | + | chr5.1:28167558-28167577 | None:intergenic | 40.0% | |
| GATGTATTGAACAAGAGCAG+TGG | - | chr5.1:28168018-28168037 | MS.gene49638:CDS | 40.0% | |
| GCATTTGAAGGAAGGATTGA+GGG | + | chr5.1:28166954-28166973 | None:intergenic | 40.0% | |
| GCTCGATCATAAGCATTTGA+AGG | + | chr5.1:28166966-28166985 | None:intergenic | 40.0% | |
| GGTCCTTCACTCATATTGAA+AGG | - | chr5.1:28167257-28167276 | MS.gene49638:intron | 40.0% | |
| TGCCCTTTCAATCAAAGGTT+TGG | - | chr5.1:28166764-28166783 | MS.gene49638:CDS | 40.0% | |
| ! | AGTGGAGGAAAGGAACTTTT+TGG | - | chr5.1:28168036-28168055 | MS.gene49638:CDS | 40.0% |
| ! | ATCGAGCCATTGCTAGATTT+TGG | - | chr5.1:28166979-28166998 | MS.gene49638:CDS | 40.0% |
| ! | TCGAGCCATTGCTAGATTTT+GGG | - | chr5.1:28166980-28166999 | MS.gene49638:CDS | 40.0% |
| !! | ACTTAAAGCTTTTGGGTGGT+TGG | - | chr5.1:28166712-28166731 | MS.gene49638:CDS | 40.0% |
| !! | GATGCTATTTGAGTTGGTTG+AGG | - | chr5.1:28168094-28168113 | MS.gene49638:CDS | 40.0% |
| AACAGCAGCAGCTATAGCTA+AGG | + | chr5.1:28168256-28168275 | None:intergenic | 45.0% | |
| ATTTGTGCCCTCACTGCAAA+TGG | + | chr5.1:28166744-28166763 | None:intergenic | 45.0% | |
| GGTAGCCCAAAATCTAGCAA+TGG | + | chr5.1:28166988-28167007 | None:intergenic | 45.0% | |
| GTATTGAACAAGAGCAGTGG+AGG | - | chr5.1:28168021-28168040 | MS.gene49638:CDS | 45.0% | |
| GTTCAGTCCATTTGCAGTGA+GGG | - | chr5.1:28166734-28166753 | MS.gene49638:CDS | 45.0% | |
| ! | GGAGGAAAGGAACTTTTTGG+AGG | - | chr5.1:28168039-28168058 | MS.gene49638:CDS | 45.0% |
| !! | AACTAGCAGAAGTGCTTGTG+AGG | - | chr5.1:28167989-28168008 | MS.gene49638:CDS | 45.0% |
| !! | AAATTTATTTATATAGAAAT+TGG | - | chr5.1:28167236-28167255 | MS.gene49638:intron | 5.0% |
| !!! | TAAAAATAAATAAATTTTTG+TGG | + | chr5.1:28167617-28167636 | None:intergenic | 5.0% |
| !!! | TCTATATAAATAAATTTTAA+AGG | + | chr5.1:28167233-28167252 | None:intergenic | 5.0% |
| GAACAAGAGCAGTGGAGGAA+AGG | - | chr5.1:28168026-28168045 | MS.gene49638:CDS | 50.0% | |
| GGCTACCTACATCGATGACA+AGG | - | chr5.1:28167001-28167020 | MS.gene49638:CDS | 50.0% | |
| GGTAGAATTCCCTTCACAGC+AGG | + | chr5.1:28168207-28168226 | None:intergenic | 50.0% | |
| GGTTCAGTCCATTTGCAGTG+AGG | - | chr5.1:28166733-28166752 | MS.gene49638:CDS | 50.0% | |
| TCAGCCCATTTCACCAAAGC+AGG | + | chr5.1:28168168-28168187 | None:intergenic | 50.0% | |
| !! | AGCAGAAGTGCTTGTGAGGT+TGG | - | chr5.1:28167993-28168012 | MS.gene49638:CDS | 50.0% |
| GCTGCTGATCCTGCTGTGAA+GGG | - | chr5.1:28168195-28168214 | MS.gene49638:CDS | 55.0% | |
| TGCTGCTGATCCTGCTGTGA+AGG | - | chr5.1:28168194-28168213 | MS.gene49638:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28166699 | 28168284 | 28166699 | ID=MS.gene49638 |
| chr5.1 | mRNA | 28166699 | 28168284 | 28166699 | ID=MS.gene49638.t1;Parent=MS.gene49638 |
| chr5.1 | exon | 28167961 | 28168284 | 28167961 | ID=MS.gene49638.t1.exon1;Parent=MS.gene49638.t1 |
| chr5.1 | CDS | 28167961 | 28168284 | 28167961 | ID=cds.MS.gene49638.t1;Parent=MS.gene49638.t1 |
| chr5.1 | exon | 28166699 | 28167061 | 28166699 | ID=MS.gene49638.t1.exon2;Parent=MS.gene49638.t1 |
| chr5.1 | CDS | 28166699 | 28167061 | 28166699 | ID=cds.MS.gene49638.t1;Parent=MS.gene49638.t1 |
| Gene Sequence |
| Protein sequence |
