Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49792.t1 | XP_013451571.1 | 98 | 299 | 6 | 0 | 11 | 309 | 7 | 305 | 1.30E-143 | 519.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49792.t1 | Q8VZU2 | 75.1 | 297 | 70 | 2 | 12 | 306 | 8 | 302 | 3.0e-109 | 396.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49792.t1 | I3T5G8 | 98.0 | 299 | 6 | 0 | 11 | 309 | 7 | 305 | 9.2e-144 | 519.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053097 | MS.gene49792 | 0.814876 | 1.23E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene49792 | -0.808188 | 3.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51627 | MS.gene49792 | PPI |
| MS.gene49792 | MS.gene56256 | PPI |
| MS.gene009458 | MS.gene49792 | PPI |
| MS.gene65117 | MS.gene49792 | PPI |
| MS.gene49792 | MS.gene78212 | PPI |
| MS.gene66057 | MS.gene49792 | PPI |
| MS.gene49792 | MS.gene77217 | PPI |
| MS.gene49792 | MS.gene63514 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49792.t1 | MTR_6g028140 | 97.993 | 299 | 6 | 0 | 11 | 309 | 7 | 305 | 0.0 | 598 |
| MS.gene49792.t1 | MTR_2g088700 | 59.011 | 283 | 115 | 1 | 22 | 303 | 22 | 304 | 7.32e-122 | 352 |
| MS.gene49792.t1 | MTR_2g088700 | 63.251 | 283 | 103 | 1 | 22 | 303 | 22 | 304 | 1.82e-119 | 345 |
| MS.gene49792.t1 | MTR_2g012270 | 47.253 | 273 | 142 | 1 | 28 | 300 | 25 | 295 | 2.08e-90 | 271 |
| MS.gene49792.t1 | MTR_4g090900 | 50.763 | 262 | 125 | 1 | 23 | 284 | 23 | 280 | 2.23e-89 | 269 |
| MS.gene49792.t1 | MTR_1g056560 | 47.761 | 268 | 140 | 0 | 36 | 303 | 43 | 310 | 2.04e-80 | 247 |
| MS.gene49792.t1 | MTR_1g056550 | 44.245 | 278 | 155 | 0 | 6 | 283 | 9 | 286 | 2.74e-78 | 241 |
| MS.gene49792.t1 | MTR_5g012010 | 43.511 | 262 | 147 | 1 | 22 | 282 | 35 | 296 | 8.31e-73 | 227 |
| MS.gene49792.t1 | MTR_7g106420 | 44.534 | 247 | 137 | 0 | 38 | 284 | 28 | 274 | 5.96e-70 | 219 |
| MS.gene49792.t1 | MTR_5g020670 | 33.077 | 260 | 163 | 3 | 23 | 281 | 27 | 276 | 2.62e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49792.t1 | AT3G03800 | 73.913 | 299 | 77 | 1 | 12 | 309 | 8 | 306 | 1.31e-153 | 432 |
| MS.gene49792.t1 | AT3G03800 | 73.913 | 299 | 77 | 1 | 12 | 309 | 8 | 306 | 1.31e-153 | 432 |
| MS.gene49792.t1 | AT5G08080 | 75.084 | 297 | 70 | 2 | 12 | 306 | 8 | 302 | 1.31e-137 | 392 |
| MS.gene49792.t1 | AT5G08080 | 75.084 | 297 | 70 | 2 | 12 | 306 | 8 | 302 | 1.31e-137 | 392 |
| MS.gene49792.t1 | AT5G08080 | 71.104 | 308 | 74 | 4 | 12 | 306 | 8 | 313 | 7.69e-135 | 385 |
| MS.gene49792.t1 | AT4G03330 | 50.763 | 262 | 127 | 1 | 23 | 284 | 23 | 282 | 1.42e-87 | 265 |
| MS.gene49792.t1 | AT3G11820 | 48.772 | 285 | 145 | 1 | 20 | 303 | 25 | 309 | 3.02e-87 | 265 |
| MS.gene49792.t1 | AT3G11820 | 49.632 | 272 | 137 | 0 | 32 | 303 | 7 | 278 | 3.37e-85 | 259 |
| MS.gene49792.t1 | AT1G61290 | 45.035 | 282 | 149 | 2 | 23 | 304 | 23 | 298 | 1.88e-84 | 256 |
| MS.gene49792.t1 | AT1G61290 | 45.035 | 282 | 149 | 2 | 23 | 304 | 23 | 298 | 1.88e-84 | 256 |
| MS.gene49792.t1 | AT1G11250 | 48.669 | 263 | 130 | 1 | 22 | 284 | 17 | 274 | 7.33e-84 | 255 |
| MS.gene49792.t1 | AT5G08080 | 72.308 | 195 | 50 | 2 | 12 | 204 | 8 | 200 | 2.88e-82 | 248 |
| MS.gene49792.t1 | AT5G08080 | 72.308 | 195 | 50 | 2 | 12 | 204 | 8 | 200 | 2.88e-82 | 248 |
| MS.gene49792.t1 | AT3G52400 | 49.270 | 274 | 139 | 0 | 30 | 303 | 35 | 308 | 7.96e-78 | 241 |
| MS.gene49792.t1 | AT1G08560 | 40.613 | 261 | 150 | 3 | 23 | 282 | 30 | 286 | 1.92e-63 | 203 |
| MS.gene49792.t1 | AT2G18260 | 34.328 | 268 | 165 | 4 | 35 | 298 | 44 | 304 | 9.82e-49 | 165 |
| MS.gene49792.t1 | AT2G18260 | 34.328 | 268 | 165 | 4 | 35 | 298 | 44 | 304 | 9.82e-49 | 165 |
Find 63 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTCTTTGCAGACATTTA+TGG | 0.204217 | 6.3:+20290270 | MS.gene49792:intron |
| GGAGAAGATGGCTGAATTTC+AGG | 0.226938 | 6.3:+20289260 | MS.gene49792:CDS |
| CAAACCATGGGTTACCAAAA+AGG | 0.240236 | 6.3:+20290940 | MS.gene49792:CDS |
| CTTGGATAGTTTCTTCAATA+AGG | 0.252769 | 6.3:+20287840 | MS.gene49792:CDS |
| TGCAAAGAAACTCAAGAAAA+TGG | 0.259809 | 6.3:+20290858 | MS.gene49792:CDS |
| GACATTGAGTTGGGAGAATA+TGG | 0.285392 | 6.3:+20287796 | MS.gene49792:CDS |
| GTTGAGAGACGTGTATTTAC+AGG | 0.293815 | 6.3:+20289409 | MS.gene49792:CDS |
| GGAGAATATGGAAGGAATTC+AGG | 0.293975 | 6.3:+20287808 | MS.gene49792:CDS |
| CTTGTTCCTGAATAGCCTTC+TGG | 0.311534 | 6.3:-20289694 | None:intergenic |
| CTTCATGGATGGCTTCTCTC+AGG | 0.356838 | 6.3:-20289372 | None:intergenic |
| TGTCGCAGAATTTGGCTAAT+AGG | 0.360483 | 6.3:+20288673 | MS.gene49792:intron |
| TTTGTCTAGCTCTTCAACTT+TGG | 0.365108 | 6.3:-20288573 | None:intergenic |
| ACCCTTCATGGCGGGAGCTT+TGG | 0.365120 | 6.3:-20288234 | None:intergenic |
| GAAAATTTGTTCACTGTCTC+CGG | 0.366933 | 6.3:-20289672 | None:intergenic |
| CAACCTCTCGATATTCTTCA+TGG | 0.373177 | 6.3:-20289387 | None:intergenic |
| CAGAAACCTGCTTGTGGAAA+AGG | 0.378140 | 6.3:+20288696 | MS.gene49792:CDS |
| TTACCTGGAGCTTTCTCAAA+AGG | 0.414308 | 6.3:-20288084 | None:intergenic |
| TCATAGTAACTAACCCTTCA+TGG | 0.437317 | 6.3:-20288246 | None:intergenic |
| TCACAGCCTTGGACTCCTCA+TGG | 0.443540 | 6.3:-20288211 | None:intergenic |
| GGGAGCTTTGGTCACAGCCT+TGG | 0.448244 | 6.3:-20288222 | None:intergenic |
| TTGTCGTTGCTGTTCTTGAC+CGG | 0.478266 | 6.3:-20288731 | None:intergenic |
| ATCCCTCGTGGTCGTGGAGG+TGG | 0.479586 | 6.3:+20287772 | MS.gene49792:CDS |
| TTCATGGATGGCTTCTCTCA+GGG | 0.480734 | 6.3:-20289371 | None:intergenic |
| TTTGAGATCCCTCGTGGTCG+TGG | 0.486500 | 6.3:+20287766 | MS.gene49792:CDS |
| CACAGCCTTGGACTCCTCAT+GGG | 0.487170 | 6.3:-20288210 | None:intergenic |
| GGAAGGAATTCAGGAGAGCT+TGG | 0.498053 | 6.3:+20287817 | MS.gene49792:CDS |
| GTCGTTCTTGAATTTCTGCA+AGG | 0.506487 | 6.3:-20290123 | None:intergenic |
| AAAGAAACTGAAGGAGAAGA+TGG | 0.512507 | 6.3:+20289248 | MS.gene49792:CDS |
| CTCTCGATATTCTTCATGGA+TGG | 0.516536 | 6.3:-20289383 | None:intergenic |
| TGCAGCTATAAAGCAGAGAA+TGG | 0.520725 | 6.3:+20288505 | MS.gene49792:intron |
| AGGCAATAATTCCCTCCAAA+AGG | 0.521264 | 6.3:+20290826 | MS.gene49792:CDS |
| GACCAAAGCTCCCGCCATGA+AGG | 0.521556 | 6.3:+20288232 | MS.gene49792:CDS |
| TGGAGGTGGTGACATTGAGT+TGG | 0.525299 | 6.3:+20287786 | MS.gene49792:CDS |
| TCAGGAACAAGGACGAGGCC+AGG | 0.529870 | 6.3:+20289706 | MS.gene49792:CDS |
| TGTTTCTGTCATCAAACCAT+GGG | 0.533401 | 6.3:+20290928 | MS.gene49792:CDS |
| TCGTTCTTGAATTTCTGCAA+GGG | 0.536427 | 6.3:-20290122 | None:intergenic |
| ATTGACAGATTAATTGAGAC+CGG | 0.539615 | 6.3:+20289653 | MS.gene49792:CDS |
| GAATTCAGGAGAGCTTGGCT+TGG | 0.539903 | 6.3:+20287822 | MS.gene49792:CDS |
| AGTAACTAACCCTTCATGGC+GGG | 0.541178 | 6.3:-20288242 | None:intergenic |
| GAAAAGGATCAGCTGTTGAC+CGG | 0.548471 | 6.3:+20288712 | MS.gene49792:CDS |
| TTGTTTCTGTCATCAAACCA+TGG | 0.549299 | 6.3:+20290927 | MS.gene49792:CDS |
| GAAACTGCTTGATTTACAGC+AGG | 0.549773 | 6.3:+20290171 | MS.gene49792:CDS |
| AGTTGAAGAGCTAGACAAAG+AGG | 0.554537 | 6.3:+20288577 | MS.gene49792:CDS |
| CAGAAGGCTATTCAGGAACA+AGG | 0.557963 | 6.3:+20289695 | MS.gene49792:CDS |
| ACCAAAGCTCCCGCCATGAA+GGG | 0.567202 | 6.3:+20288233 | MS.gene49792:CDS |
| AACAATGAGAAGTATCATGA+TGG | 0.567362 | 6.3:-20290891 | None:intergenic |
| GGAGGTGGTGACATTGAGTT+GGG | 0.570184 | 6.3:+20287787 | MS.gene49792:CDS |
| GCTTGACAACATAGAATCAC+AGG | 0.577422 | 6.3:+20290327 | MS.gene49792:CDS |
| GGATGCCCATGAGGAGTCCA+AGG | 0.583800 | 6.3:+20288205 | MS.gene49792:intron |
| AACGGGCGCAAGAGCTGATG+AGG | 0.586140 | 6.3:+20289543 | MS.gene49792:CDS |
| TTGAGTTGGGAGAATATGGA+AGG | 0.601130 | 6.3:+20287800 | MS.gene49792:CDS |
| AATAGGCAGAAACCTGCTTG+TGG | 0.617915 | 6.3:+20288690 | MS.gene49792:CDS |
| GGGCGCAAGAGCTGATGAGG+AGG | 0.623736 | 6.3:+20289546 | MS.gene49792:CDS |
| GCTATTCAGGAACAAGGACG+AGG | 0.633215 | 6.3:+20289701 | MS.gene49792:CDS |
| GAGATCCCTCGTGGTCGTGG+AGG | 0.639075 | 6.3:+20287769 | MS.gene49792:CDS |
| GCAGTAGATCATGTGCAGCA+AGG | 0.646558 | 6.3:+20290806 | MS.gene49792:CDS |
| CTTTATGCAGGATGCCCATG+AGG | 0.651012 | 6.3:+20288196 | MS.gene49792:intron |
| TCACCACCTCCACGACCACG+AGG | 0.693877 | 6.3:-20287775 | None:intergenic |
| GAATCGTTTGAGATCCCTCG+TGG | 0.704785 | 6.3:+20287760 | MS.gene49792:CDS |
| CATCCATGAAGAATATCGAG+AGG | 0.708099 | 6.3:+20289384 | MS.gene49792:CDS |
| GCAGTGTTAGTTGATGCACA+AGG | 0.712002 | 6.3:+20290298 | MS.gene49792:CDS |
| TAGTAACTAACCCTTCATGG+CGG | 0.717312 | 6.3:-20288243 | None:intergenic |
| CACCACCTCCACGACCACGA+GGG | 0.725442 | 6.3:-20287774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTGTATAATTTG+CGG | + | chr6.3:20287943-20287962 | MS.gene49792:intron | 10.0% |
| !!! | TAAAAAATTTCTAAGAAATA+AGG | - | chr6.3:20289762-20289781 | None:intergenic | 10.0% |
| !! | AACTGATTATATAGTAAATT+TGG | + | chr6.3:20288987-20289006 | MS.gene49792:intron | 15.0% |
| !! | ATTATAGAATACAAAAAAGA+AGG | - | chr6.3:20289212-20289231 | None:intergenic | 15.0% |
| !! | TATGATAAAAGAAAAATCAT+CGG | + | chr6.3:20288344-20288363 | MS.gene49792:intron | 15.0% |
| !!! | ATTGTTATTATGATCATAAT+TGG | + | chr6.3:20289158-20289177 | MS.gene49792:intron | 15.0% |
| !!! | TCTCTTAAAATTTTAAAAAG+TGG | - | chr6.3:20289917-20289936 | None:intergenic | 15.0% |
| !!! | TTAATTTGATTTTCTTTTTC+AGG | + | chr6.3:20287738-20287757 | MS.gene49792:intron | 15.0% |
| !!! | TTTACTTGAATTTTCATTAA+TGG | + | chr6.3:20289575-20289594 | MS.gene49792:intron | 15.0% |
| !! | AATTTCAAATGTCAACTATT+TGG | + | chr6.3:20290543-20290562 | MS.gene49792:intron | 20.0% |
| !! | ACATGAAAGTTATAATCATT+AGG | - | chr6.3:20290255-20290274 | None:intergenic | 20.0% |
| !! | ATTAAAAATATACCTTTGCA+AGG | + | chr6.3:20290056-20290075 | MS.gene49792:intron | 20.0% |
| !! | GAGTTATATTATGTAGATAA+TGG | + | chr6.3:20290096-20290115 | MS.gene49792:intron | 20.0% |
| !! | TCTAAGTACTTAATAAAACA+CGG | - | chr6.3:20288626-20288645 | None:intergenic | 20.0% |
| !! | TTAAACGATAGATAAAACAA+TGG | - | chr6.3:20288770-20288789 | None:intergenic | 20.0% |
| !! | TTATGTTGATCATAAACAAA+AGG | - | chr6.3:20288324-20288343 | None:intergenic | 20.0% |
| !!! | AAAATTTCTAAGAAATAAGG+AGG | - | chr6.3:20289759-20289778 | None:intergenic | 20.0% |
| !!! | AAATTTCTAAGAAATAAGGA+GGG | - | chr6.3:20289758-20289777 | None:intergenic | 20.0% |
| !!! | AGTAAATTTGGTAATTCAAA+AGG | + | chr6.3:20288999-20289018 | MS.gene49792:intron | 20.0% |
| !!! | TAACAATTTCATGTTTTCTA+TGG | + | chr6.3:20289503-20289522 | MS.gene49792:intron | 20.0% |
| ! | AACTCATCAATCAAACTAAT+TGG | - | chr6.3:20290757-20290776 | None:intergenic | 25.0% |
| ! | AGAAAGTAATGTTGTATACA+AGG | + | chr6.3:20289781-20289800 | MS.gene49792:intron | 25.0% |
| ! | AGTTGAATAAGAAATTGAGA+AGG | - | chr6.3:20289999-20290018 | None:intergenic | 25.0% |
| ! | CTATTGAACAATTAATCGAT+AGG | - | chr6.3:20288026-20288045 | None:intergenic | 25.0% |
| ! | GAAAGAATTACATGAAAGAA+GGG | - | chr6.3:20288379-20288398 | None:intergenic | 25.0% |
| ! | GAAAGTAATGTTGTATACAA+GGG | + | chr6.3:20289782-20289801 | MS.gene49792:intron | 25.0% |
| ! | GTGCATAAAGTTTAATTGAA+AGG | - | chr6.3:20290209-20290228 | None:intergenic | 25.0% |
| ! | TCTTAATTAAGTTATCCCAT+TGG | + | chr6.3:20289459-20289478 | MS.gene49792:intron | 25.0% |
| ! | TGTACTGAAAGAAAGAAAAT+TGG | + | chr6.3:20289057-20289076 | MS.gene49792:intron | 25.0% |
| ! | TTACATTTGTGATGAAATTC+AGG | + | chr6.3:20290775-20290794 | MS.gene49792:intron | 25.0% |
| ! | TTCTCAATTTCTTATTCAAC+TGG | + | chr6.3:20289998-20290017 | MS.gene49792:intron | 25.0% |
| !! | AATTTCTAAGAAATAAGGAG+GGG | - | chr6.3:20289757-20289776 | None:intergenic | 25.0% |
| !! | CTATCGATTAATTGTTCAAT+AGG | + | chr6.3:20288024-20288043 | MS.gene49792:intron | 25.0% |
| !!! | ATATGAGTAAAGTTCTAAAC+TGG | + | chr6.3:20290402-20290421 | MS.gene49792:intron | 25.0% |
| !!! | TAAGTTGATTTTGACATTCA+AGG | + | chr6.3:20289828-20289847 | MS.gene49792:intron | 25.0% |
| !!! | TTTGATTTTTGAAGAGTACA+GGG | + | chr6.3:20287633-20287652 | MS.gene49792:CDS | 25.0% |
| !!! | TTTTGATTTTTGAAGAGTAC+AGG | + | chr6.3:20287632-20287651 | MS.gene49792:CDS | 25.0% |
| AAAATTGTAATCGCTGTTTG+TGG | - | chr6.3:20289128-20289147 | None:intergenic | 30.0% | |
| AAACTAATTGGATCTGGATT+TGG | - | chr6.3:20290745-20290764 | None:intergenic | 30.0% | |
| AAAGAAGGTAAATACGAGTT+TGG | - | chr6.3:20289197-20289216 | None:intergenic | 30.0% | |
| AAATCGAGCTAATTAACCAA+TGG | - | chr6.3:20289478-20289497 | None:intergenic | 30.0% | |
| AACTATTTGGTCCTCAAAAA+TGG | + | chr6.3:20290556-20290575 | MS.gene49792:intron | 30.0% | |
| AAGATGTCGAAAGTTTAACT+AGG | + | chr6.3:20287671-20287690 | MS.gene49792:intron | 30.0% | |
| AATCGAGCTAATTAACCAAT+GGG | - | chr6.3:20289477-20289496 | None:intergenic | 30.0% | |
| AGTCGTTTATATAAGTCAGA+CGG | - | chr6.3:20290681-20290700 | None:intergenic | 30.0% | |
| ATTGACAGATTAATTGAGAC+CGG | + | chr6.3:20289653-20289672 | MS.gene49792:CDS | 30.0% | |
| ATTGGTTAATTAGCTCGATT+TGG | + | chr6.3:20289477-20289496 | MS.gene49792:intron | 30.0% | |
| CGAAAGAATTACATGAAAGA+AGG | - | chr6.3:20288380-20288399 | None:intergenic | 30.0% | |
| CTTGGATAGTTTCTTCAATA+AGG | + | chr6.3:20287840-20287859 | MS.gene49792:CDS | 30.0% | |
| GATCATTCGATTTAGATCAA+TGG | + | chr6.3:20290614-20290633 | MS.gene49792:intron | 30.0% | |
| TCAATCAAACTAATTGGATC+TGG | - | chr6.3:20290751-20290770 | None:intergenic | 30.0% | |
| TCGTTTAAACACTTAACACT+AGG | + | chr6.3:20288782-20288801 | MS.gene49792:intron | 30.0% | |
| TGCAAAGAAACTCAAGAAAA+TGG | + | chr6.3:20290858-20290877 | MS.gene49792:CDS | 30.0% | |
| TTTCAGTACATGTGAGATTA+AGG | - | chr6.3:20289047-20289066 | None:intergenic | 30.0% | |
| ! | ATGTGAGATTAAGGTATTCA+TGG | - | chr6.3:20289038-20289057 | None:intergenic | 30.0% |
| ! | ATTTCTAAGAAATAAGGAGG+GGG | - | chr6.3:20289756-20289775 | None:intergenic | 30.0% |
| ! | CAAACAGCGATTACAATTTT+TGG | + | chr6.3:20289128-20289147 | MS.gene49792:intron | 30.0% |
| ! | GTTTTTGTGATTGTCAGTAA+CGG | + | chr6.3:20289525-20289544 | MS.gene49792:intron | 30.0% |
| ! | TTAAAAAGTGGTTTTCATCG+TGG | - | chr6.3:20289905-20289924 | None:intergenic | 30.0% |
| ! | TTGGTAATTCAAAAGGAACT+GGG | + | chr6.3:20289006-20289025 | MS.gene49792:intron | 30.0% |
| ! | TTTGCATTTTCTTTGCCTTT+TGG | - | chr6.3:20290844-20290863 | None:intergenic | 30.0% |
| ! | TTTGGTAATTCAAAAGGAAC+TGG | + | chr6.3:20289005-20289024 | MS.gene49792:intron | 30.0% |
| ! | TTTTCATCATTTTGCACACA+AGG | + | chr6.3:20290353-20290372 | MS.gene49792:intron | 30.0% |
| ! | TTTTTGTGATTGTCAGTAAC+GGG | + | chr6.3:20289526-20289545 | MS.gene49792:intron | 30.0% |
| !! | AACAATGAGAAGTATCATGA+TGG | - | chr6.3:20290894-20290913 | None:intergenic | 30.0% |
| !! | GAAATCCAAATCCATTTTTG+AGG | - | chr6.3:20290570-20290589 | None:intergenic | 30.0% |
| AAAGAAACTGAAGGAGAAGA+TGG | + | chr6.3:20289248-20289267 | MS.gene49792:CDS | 35.0% | |
| AAAGTAAAGAGAGAAGAACC+TGG | - | chr6.3:20289727-20289746 | None:intergenic | 35.0% | |
| ACATTATGTGTCGCAGAATT+TGG | + | chr6.3:20288665-20288684 | MS.gene49792:intron | 35.0% | |
| ACTGTGAAGGAAAATTTACC+TGG | - | chr6.3:20288102-20288121 | None:intergenic | 35.0% | |
| CAATTACTACCAAGTGAAGT+CGG | - | chr6.3:20289970-20289989 | None:intergenic | 35.0% | |
| CATGTCTTTGCAGACATTTA+TGG | + | chr6.3:20290270-20290289 | MS.gene49792:intron | 35.0% | |
| GGTGTTTGCGAAAAAAAACA+CGG | + | chr6.3:20290423-20290442 | MS.gene49792:intron | 35.0% | |
| TAGTTAGTCATCAACTGTGA+AGG | - | chr6.3:20288115-20288134 | None:intergenic | 35.0% | |
| TCAACTTTCAGAGACCAAAT+CGG | - | chr6.3:20290452-20290471 | None:intergenic | 35.0% | |
| TCATAGTAACTAACCCTTCA+TGG | - | chr6.3:20288249-20288268 | None:intergenic | 35.0% | |
| TCGTTCTTGAATTTCTGCAA+GGG | - | chr6.3:20290125-20290144 | None:intergenic | 35.0% | |
| TTAAGTCCTTCATACATGCA+CGG | + | chr6.3:20288929-20288948 | MS.gene49792:intron | 35.0% | |
| ! | AAACCATGGGTTACCAAAAA+GGG | + | chr6.3:20290941-20290960 | MS.gene49792:CDS | 35.0% |
| ! | AATTTTCCAGAAGGCTATTC+AGG | + | chr6.3:20289688-20289707 | MS.gene49792:CDS | 35.0% |
| ! | ACTACTCAAAACAGCTTTTG+AGG | + | chr6.3:20289938-20289957 | MS.gene49792:intron | 35.0% |
| ! | ATAATCAGTTAGCCTAGAAG+CGG | - | chr6.3:20288977-20288996 | None:intergenic | 35.0% |
| ! | CAGTGAACAAATTTTCCAGA+AGG | + | chr6.3:20289679-20289698 | MS.gene49792:CDS | 35.0% |
| ! | CATTTTCTTTGCCTTTTGGA+GGG | - | chr6.3:20290840-20290859 | None:intergenic | 35.0% |
| ! | GAAAATTTGTTCACTGTCTC+CGG | - | chr6.3:20289675-20289694 | None:intergenic | 35.0% |
| ! | TCTCCTTCAGTTTCTTTTTC+AGG | - | chr6.3:20289245-20289264 | None:intergenic | 35.0% |
| ! | TGTTTCTGTCATCAAACCAT+GGG | + | chr6.3:20290928-20290947 | MS.gene49792:CDS | 35.0% |
| ! | TTGGTCCTCAAAAATGGATT+TGG | + | chr6.3:20290562-20290581 | MS.gene49792:intron | 35.0% |
| ! | TTTTATGCACACCTTTATGC+AGG | + | chr6.3:20288184-20288203 | MS.gene49792:intron | 35.0% |
| !! | CTCCTTCAGTTTCTTTTTCA+GGG | - | chr6.3:20289244-20289263 | None:intergenic | 35.0% |
| !! | TTGTTTCTGTCATCAAACCA+TGG | + | chr6.3:20290927-20290946 | MS.gene49792:CDS | 35.0% |
| !! | TTTGTCTAGCTCTTCAACTT+TGG | - | chr6.3:20288576-20288595 | None:intergenic | 35.0% |
| AAAAAACACGGAGACCGATT+TGG | + | chr6.3:20290435-20290454 | MS.gene49792:intron | 40.0% | |
| AACCATTGATCTGTAACAGC+AGG | - | chr6.3:20290592-20290611 | None:intergenic | 40.0% | |
| AGGCAATAATTCCCTCCAAA+AGG | + | chr6.3:20290826-20290845 | MS.gene49792:CDS | 40.0% | |
| AGTTGAAGAGCTAGACAAAG+AGG | + | chr6.3:20288577-20288596 | MS.gene49792:CDS | 40.0% | |
| ATTCTCAGACCTCAACAAGT+AGG | - | chr6.3:20288905-20288924 | None:intergenic | 40.0% | |
| CAACCTCTCGATATTCTTCA+TGG | - | chr6.3:20289390-20289409 | None:intergenic | 40.0% | |
| CATCCATGAAGAATATCGAG+AGG | + | chr6.3:20289384-20289403 | MS.gene49792:CDS | 40.0% | |
| CTCTCGATATTCTTCATGGA+TGG | - | chr6.3:20289386-20289405 | None:intergenic | 40.0% | |
| GAAACTGCTTGATTTACAGC+AGG | + | chr6.3:20290171-20290190 | MS.gene49792:CDS | 40.0% | |
| GACGCTAATTATGCTATGTC+AGG | + | chr6.3:20288838-20288857 | MS.gene49792:intron | 40.0% | |
| GATCAAGATGACTGAACCTT+AGG | + | chr6.3:20289097-20289116 | MS.gene49792:intron | 40.0% | |
| GCTGTTTGTGGAAAATCCTA+AGG | - | chr6.3:20289116-20289135 | None:intergenic | 40.0% | |
| GCTTGACAACATAGAATCAC+AGG | + | chr6.3:20290327-20290346 | MS.gene49792:CDS | 40.0% | |
| GGAACGCAAACATAAAGAGA+AGG | - | chr6.3:20288956-20288975 | None:intergenic | 40.0% | |
| GGAGAATATGGAAGGAATTC+AGG | + | chr6.3:20287808-20287827 | MS.gene49792:CDS | 40.0% | |
| GTCGTTCTTGAATTTCTGCA+AGG | - | chr6.3:20290126-20290145 | None:intergenic | 40.0% | |
| GTTGAGAGACGTGTATTTAC+AGG | + | chr6.3:20289409-20289428 | MS.gene49792:CDS | 40.0% | |
| TAGTAACTAACCCTTCATGG+CGG | - | chr6.3:20288246-20288265 | None:intergenic | 40.0% | |
| TGCAGCTATAAAGCAGAGAA+TGG | + | chr6.3:20288505-20288524 | MS.gene49792:intron | 40.0% | |
| TGCCCTGAAAAAGAAACTGA+AGG | + | chr6.3:20289239-20289258 | MS.gene49792:CDS | 40.0% | |
| TGGAAGAAAATGCGTGCTTA+AGG | + | chr6.3:20289595-20289614 | MS.gene49792:intron | 40.0% | |
| TGTCGCAGAATTTGGCTAAT+AGG | + | chr6.3:20288673-20288692 | MS.gene49792:intron | 40.0% | |
| TTACCTGGAGCTTTCTCAAA+AGG | - | chr6.3:20288087-20288106 | None:intergenic | 40.0% | |
| TTCCTGCTGTTACAGATCAA+TGG | + | chr6.3:20290587-20290606 | MS.gene49792:intron | 40.0% | |
| ! | AAGATGGCTGAATTTCAGGT+AGG | + | chr6.3:20289264-20289283 | MS.gene49792:intron | 40.0% |
| ! | CAAACCATGGGTTACCAAAA+AGG | + | chr6.3:20290940-20290959 | MS.gene49792:CDS | 40.0% |
| ! | GATGTCATTCCTACTTGTTG+AGG | + | chr6.3:20288893-20288912 | MS.gene49792:intron | 40.0% |
| ! | GCATTTTCTTTGCCTTTTGG+AGG | - | chr6.3:20290841-20290860 | None:intergenic | 40.0% |
| !! | GACATTGAGTTGGGAGAATA+TGG | + | chr6.3:20287796-20287815 | MS.gene49792:CDS | 40.0% |
| !! | TAACCTTTTGAGAAAGCTCC+AGG | + | chr6.3:20288081-20288100 | MS.gene49792:CDS | 40.0% |
| !! | TTGAGTTGGGAGAATATGGA+AGG | + | chr6.3:20287800-20287819 | MS.gene49792:CDS | 40.0% |
| AATAGGCAGAAACCTGCTTG+TGG | + | chr6.3:20288690-20288709 | MS.gene49792:CDS | 45.0% | |
| AGTAACTAACCCTTCATGGC+GGG | - | chr6.3:20288245-20288264 | None:intergenic | 45.0% | |
| CAGAAACCTGCTTGTGGAAA+AGG | + | chr6.3:20288696-20288715 | MS.gene49792:CDS | 45.0% | |
| CAGAAGGCTATTCAGGAACA+AGG | + | chr6.3:20289695-20289714 | MS.gene49792:CDS | 45.0% | |
| CTTGTTCCTGAATAGCCTTC+TGG | - | chr6.3:20289697-20289716 | None:intergenic | 45.0% | |
| GAAAAGGATCAGCTGTTGAC+CGG | + | chr6.3:20288712-20288731 | MS.gene49792:CDS | 45.0% | |
| GGAGAAGATGGCTGAATTTC+AGG | + | chr6.3:20289260-20289279 | MS.gene49792:CDS | 45.0% | |
| TATGTTTGCGTTCCGCTTCT+AGG | + | chr6.3:20288962-20288981 | MS.gene49792:intron | 45.0% | |
| TCTCAGGGTCTGCAAAGATT+TGG | - | chr6.3:20289359-20289378 | None:intergenic | 45.0% | |
| TTCATGGATGGCTTCTCTCA+GGG | - | chr6.3:20289374-20289393 | None:intergenic | 45.0% | |
| ! | GCAGTGTTAGTTGATGCACA+AGG | + | chr6.3:20290298-20290317 | MS.gene49792:CDS | 45.0% |
| ! | TTGTCGTTGCTGTTCTTGAC+CGG | - | chr6.3:20288734-20288753 | None:intergenic | 45.0% |
| ! | TTTGAAGAGTACAGGGTGTG+TGG | + | chr6.3:20287640-20287659 | MS.gene49792:intron | 45.0% |
| !! | AAATAATTTGATTAATTAAT+AGG | - | chr6.3:20287932-20287951 | None:intergenic | 5.0% |
| CTCATGGGCATCCTGCATAA+AGG | - | chr6.3:20288198-20288217 | None:intergenic | 50.0% | |
| CTTCATGGATGGCTTCTCTC+AGG | - | chr6.3:20289375-20289394 | None:intergenic | 50.0% | |
| CTTTATGCAGGATGCCCATG+AGG | + | chr6.3:20288196-20288215 | MS.gene49792:intron | 50.0% | |
| GAAGGACCGTGCATGTATGA+AGG | - | chr6.3:20288938-20288957 | None:intergenic | 50.0% | |
| GAATTCAGGAGAGCTTGGCT+TGG | + | chr6.3:20287822-20287841 | MS.gene49792:CDS | 50.0% | |
| GCAGTAGATCATGTGCAGCA+AGG | + | chr6.3:20290806-20290825 | MS.gene49792:CDS | 50.0% | |
| GCTATTCAGGAACAAGGACG+AGG | + | chr6.3:20289701-20289720 | MS.gene49792:CDS | 50.0% | |
| GGAAGGAATTCAGGAGAGCT+TGG | + | chr6.3:20287817-20287836 | MS.gene49792:CDS | 50.0% | |
| GGAGGTGGTGACATTGAGTT+GGG | + | chr6.3:20287787-20287806 | MS.gene49792:CDS | 50.0% | |
| TGGAGGTGGTGACATTGAGT+TGG | + | chr6.3:20287786-20287805 | MS.gene49792:CDS | 50.0% | |
| TGTGAGACGTGACCTTGCAA+AGG | - | chr6.3:20290071-20290090 | None:intergenic | 50.0% | |
| ! | GAATCGTTTGAGATCCCTCG+TGG | + | chr6.3:20287760-20287779 | MS.gene49792:CDS | 50.0% |
| ! | GCTGATCCTTTTCCACAAGC+AGG | - | chr6.3:20288705-20288724 | None:intergenic | 50.0% |
| !! | AGGATCTCACCGACTTCACT+TGG | + | chr6.3:20289958-20289977 | MS.gene49792:intron | 50.0% |
| !! | GCACCCTTTTTGGTAACCCA+TGG | - | chr6.3:20290947-20290966 | None:intergenic | 50.0% |
| ACCAAAGCTCCCGCCATGAA+GGG | + | chr6.3:20288233-20288252 | MS.gene49792:CDS | 55.0% | |
| CACAGCCTTGGACTCCTCAT+GGG | - | chr6.3:20288213-20288232 | None:intergenic | 55.0% | |
| TCACAGCCTTGGACTCCTCA+TGG | - | chr6.3:20288214-20288233 | None:intergenic | 55.0% | |
| ! | TTTGAGATCCCTCGTGGTCG+TGG | + | chr6.3:20287766-20287785 | MS.gene49792:CDS | 55.0% |
| AACGGGCGCAAGAGCTGATG+AGG | + | chr6.3:20289543-20289562 | MS.gene49792:CDS | 60.0% | |
| GACCAAAGCTCCCGCCATGA+AGG | + | chr6.3:20288232-20288251 | MS.gene49792:CDS | 60.0% | |
| GGATGCCCATGAGGAGTCCA+AGG | + | chr6.3:20288205-20288224 | MS.gene49792:intron | 60.0% | |
| TCAGGAACAAGGACGAGGCC+AGG | + | chr6.3:20289706-20289725 | MS.gene49792:CDS | 60.0% | |
| ! | ACCCTTCATGGCGGGAGCTT+TGG | - | chr6.3:20288237-20288256 | None:intergenic | 60.0% |
| ! | GGGAGCTTTGGTCACAGCCT+TGG | - | chr6.3:20288225-20288244 | None:intergenic | 60.0% |
| ATCCCTCGTGGTCGTGGAGG+TGG | + | chr6.3:20287772-20287791 | MS.gene49792:CDS | 65.0% | |
| CACCACCTCCACGACCACGA+GGG | - | chr6.3:20287777-20287796 | None:intergenic | 65.0% | |
| GAGATCCCTCGTGGTCGTGG+AGG | + | chr6.3:20287769-20287788 | MS.gene49792:CDS | 65.0% | |
| GGGCGCAAGAGCTGATGAGG+AGG | + | chr6.3:20289546-20289565 | MS.gene49792:CDS | 65.0% | |
| TCACCACCTCCACGACCACG+AGG | - | chr6.3:20287778-20287797 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 20287625 | 20290970 | 20287625 | ID=MS.gene49792 |
| chr6.3 | mRNA | 20287625 | 20290970 | 20287625 | ID=MS.gene49792.t1;Parent=MS.gene49792 |
| chr6.3 | exon | 20287625 | 20287654 | 20287625 | ID=MS.gene49792.t1.exon1;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20287625 | 20287654 | 20287625 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20287760 | 20287861 | 20287760 | ID=MS.gene49792.t1.exon2;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20287760 | 20287861 | 20287760 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20288046 | 20288102 | 20288046 | ID=MS.gene49792.t1.exon3;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20288046 | 20288102 | 20288046 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20288206 | 20288254 | 20288206 | ID=MS.gene49792.t1.exon4;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20288206 | 20288254 | 20288206 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20288510 | 20288598 | 20288510 | ID=MS.gene49792.t1.exon5;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20288510 | 20288598 | 20288510 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20288681 | 20288754 | 20288681 | ID=MS.gene49792.t1.exon6;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20288681 | 20288754 | 20288681 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20289239 | 20289281 | 20289239 | ID=MS.gene49792.t1.exon7;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20289239 | 20289281 | 20289239 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20289370 | 20289430 | 20289370 | ID=MS.gene49792.t1.exon8;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20289370 | 20289430 | 20289370 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20289542 | 20289567 | 20289542 | ID=MS.gene49792.t1.exon9;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20289542 | 20289567 | 20289542 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20289650 | 20289727 | 20289650 | ID=MS.gene49792.t1.exon10;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20289650 | 20289727 | 20289650 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20290112 | 20290192 | 20290112 | ID=MS.gene49792.t1.exon11;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20290112 | 20290192 | 20290112 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20290283 | 20290348 | 20290283 | ID=MS.gene49792.t1.exon12;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20290283 | 20290348 | 20290283 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| chr6.3 | exon | 20290797 | 20290970 | 20290797 | ID=MS.gene49792.t1.exon13;Parent=MS.gene49792.t1 |
| chr6.3 | CDS | 20290797 | 20290970 | 20290797 | ID=cds.MS.gene49792.t1;Parent=MS.gene49792.t1 |
| Gene Sequence |
| Protein sequence |
