AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50038.t1 MTR_2g100250 98.413 756 12 0 1 756 1 756 0.0 1569
MS.gene50038.t1 MTR_8g016160 74.005 754 180 5 4 756 7 745 0.0 1169
MS.gene50038.t1 MTR_2g103730 44.513 811 386 19 4 756 5 809 0.0 632
MS.gene50038.t1 MTR_3g107360 43.316 778 382 17 30 756 53 822 0.0 620
MS.gene50038.t1 MTR_4g010650 42.099 810 404 19 5 756 6 808 0.0 608
MS.gene50038.t1 MTR_3g107320 42.987 770 389 17 32 756 62 826 0.0 601
MS.gene50038.t1 MTR_5g011050 41.321 772 382 20 36 749 90 848 0.0 543
MS.gene50038.t1 MTR_5g011060 40.674 772 387 20 36 749 84 842 4.54e-178 531
MS.gene50038.t1 MTR_8g033080 41.276 768 384 21 36 745 281 1039 9.68e-178 537
MS.gene50038.t1 MTR_7g075910 40.933 772 376 25 36 745 351 1104 6.32e-177 537
MS.gene50038.t1 MTR_5g023050 39.152 802 392 24 36 756 86 872 4.30e-176 527
MS.gene50038.t1 MTR_8g088690 40.076 786 391 21 36 756 72 842 7.88e-174 520
MS.gene50038.t1 MTR_3g114840 39.547 794 392 23 36 756 73 851 1.11e-170 513
MS.gene50038.t1 MTR_3g114840 39.853 680 329 18 36 645 73 742 2.42e-144 443
MS.gene50038.t1 MTR_8g033080 39.312 552 275 16 36 534 281 825 1.04e-107 348
MS.gene50038.t1 MTR_1g083620 33.462 260 123 14 427 670 461 686 2.72e-22 103
MS.gene50038.t1 MTR_1g083620 28.440 218 126 5 185 392 127 324 5.46e-16 82.8
MS.gene50038.t1 MTR_1g083620 33.462 260 123 14 427 670 721 946 2.89e-22 103
MS.gene50038.t1 MTR_1g083620 28.440 218 126 5 185 392 387 584 4.70e-16 83.2
MS.gene50038.t1 MTR_2g435560 30.837 227 109 8 425 638 629 820 1.54e-19 94.4
MS.gene50038.t1 MTR_2g435560 26.804 291 143 10 145 393 189 451 1.23e-15 81.6
MS.gene50038.t1 MTR_2g435560 30.837 227 109 8 425 638 764 955 1.59e-19 94.4
MS.gene50038.t1 MTR_2g435560 25.740 338 166 12 145 425 324 633 9.66e-16 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50038.t1 AT1G55180 62.240 768 263 11 3 756 8 762 0.0 1000
MS.gene50038.t1 AT1G55180 62.097 744 255 11 27 756 10 740 0.0 964
MS.gene50038.t1 AT3G15730 43.342 766 383 16 36 756 51 810 0.0 613
MS.gene50038.t1 AT1G52570 43.211 766 384 19 36 756 51 810 0.0 608
MS.gene50038.t1 AT1G52570 43.211 766 384 19 36 756 51 810 0.0 608
MS.gene50038.t1 AT1G52570 43.211 766 384 19 36 756 51 810 0.0 608
MS.gene50038.t1 AT5G25370 42.753 821 396 18 4 756 6 820 0.0 583
MS.gene50038.t1 AT5G25370 42.753 821 396 18 4 756 6 820 0.0 583
MS.gene50038.t1 AT5G25370 42.753 821 396 18 4 756 6 820 0.0 583
MS.gene50038.t1 AT5G25370 45.027 744 359 17 57 756 8 745 0.0 568
MS.gene50038.t1 AT4G11830 41.753 776 370 23 36 745 55 814 1.24e-180 537
MS.gene50038.t1 AT4G11830 41.753 776 370 22 36 745 87 846 3.44e-180 537
MS.gene50038.t1 AT4G11840 41.260 778 372 25 36 745 96 856 6.49e-177 529
MS.gene50038.t1 AT2G42010 40.808 767 385 22 36 745 319 1073 9.58e-177 535
MS.gene50038.t1 AT4G11840 40.851 776 348 24 36 745 96 826 3.60e-175 524
MS.gene50038.t1 AT4G11850 41.268 773 378 23 36 745 89 848 1.48e-174 523
MS.gene50038.t1 AT2G42010 39.520 792 385 22 36 745 319 1098 3.46e-173 527
MS.gene50038.t1 AT4G00240 39.323 768 395 21 36 745 11 765 5.50e-168 503
MS.gene50038.t1 AT4G35790 38.269 797 397 23 36 756 80 857 9.32e-168 505
MS.gene50038.t1 AT4G00240 38.605 803 407 24 16 745 93 882 4.24e-167 505
MS.gene50038.t1 AT4G00240 39.323 768 395 21 36 745 163 917 2.84e-166 504
MS.gene50038.t1 AT4G35790 37.748 808 397 23 36 756 80 868 4.12e-166 501
MS.gene50038.t1 AT4G35790 37.705 610 299 17 36 573 80 680 1.55e-121 380
MS.gene50038.t1 AT4G11830 40.036 562 268 17 36 542 87 634 2.44e-114 360
MS.gene50038.t1 AT4G11830 40.110 546 258 18 36 526 87 618 4.92e-109 346
MS.gene50038.t1 AT3G16785 32.727 220 114 8 425 638 739 930 6.63e-20 95.9
MS.gene50038.t1 AT3G16785 29.577 213 116 7 193 393 388 578 5.70e-15 79.7
MS.gene50038.t1 AT3G16785 32.727 220 114 8 425 638 739 930 7.09e-20 95.5
MS.gene50038.t1 AT3G16785 29.577 213 116 7 193 393 388 578 5.25e-15 79.7
MS.gene50038.t1 AT3G16785 32.727 220 114 8 425 638 739 930 7.09e-20 95.5
MS.gene50038.t1 AT3G16785 29.577 213 116 7 193 393 388 578 5.25e-15 79.7
MS.gene50038.t1 AT3G16785 32.727 220 114 8 425 638 739 930 7.38e-20 95.5
MS.gene50038.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.84e-15 80.1
MS.gene50038.t1 AT3G16785 32.727 220 114 8 425 638 739 930 8.29e-20 95.5
MS.gene50038.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.97e-15 80.1
MS.gene50038.t1 AT3G16785 32.727 220 114 8 425 638 739 930 8.29e-20 95.5
MS.gene50038.t1 AT3G16785 29.577 213 116 7 193 393 388 578 4.97e-15 80.1
MS.gene50038.t1 AT3G05630 29.804 255 143 9 425 670 694 921 4.70e-19 92.8
MS.gene50038.t1 AT3G05630 27.477 222 123 7 185 392 375 572 7.66e-14 76.3

Find 163 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCTTTGTTCTTGATAAA+TGG 0.146812 2.3:-3503645 None:intergenic
TCTTGAACTGGTTCACTTTC+AGG 0.161180 2.3:-3504452 None:intergenic
TAAAATTAAGGTTTATATTA+TGG 0.167823 2.3:+3503035 MS.gene50038:CDS
TGCACACATTCTAAACTTTC+TGG 0.177165 2.3:-3505440 None:intergenic
GTGAATGTCACCTTTGCTTA+TGG 0.212678 2.3:-3505357 None:intergenic
TTTCAGTGTTTATTTGTAAA+TGG 0.237490 2.3:+3502758 MS.gene50038:intron
ATGGTTCAAGCCAGCAAATT+TGG 0.246559 2.3:+3503054 MS.gene50038:CDS
TTCCTCAACAAGCACTTCTA+TGG 0.258809 2.3:+3504124 MS.gene50038:CDS
TCACTTTCAGGCACTCCTTC+TGG 0.260249 2.3:-3504440 None:intergenic
AAAACAACATGTACCATATT+AGG 0.268038 2.3:+3502917 MS.gene50038:CDS
GATGCTCATGCTTGTGTTAC+TGG 0.268529 2.3:+3503996 MS.gene50038:CDS
ACATCCTCCCATAACTTTCT+AGG 0.271863 2.3:-3503226 None:intergenic
GGCACCCTCCAATGAAATAT+TGG 0.278690 2.3:-3504292 None:intergenic
CAAATCAAGAACTAAAATTA+AGG 0.279298 2.3:+3503023 MS.gene50038:CDS
CTACAGCAGTGAAGAAATTA+TGG 0.290427 2.3:+3505499 MS.gene50038:CDS
CAACTTGGTTCCAAATTTGC+TGG 0.292857 2.3:-3503064 None:intergenic
TTTGCCCGTCCATCGATCTT+TGG 0.295154 2.3:-3505277 None:intergenic
TCAACTGTTGTGCCTTGATT+TGG 0.299930 2.3:-3502946 None:intergenic
TTGCTTCGACGTAAGCTTCA+TGG 0.302186 2.3:-3504235 None:intergenic
CCCATGATAGTAACACAAAA+TGG 0.306781 2.3:+3505551 MS.gene50038:CDS
TTCCCTCTACTAATGGAAAA+TGG 0.318183 2.3:+3502995 MS.gene50038:CDS
TGGCTGTAAGGGTTATGATT+TGG 0.320459 2.3:+3503604 MS.gene50038:CDS
ATATGTACCAGAACCATCTT+AGG 0.324723 2.3:-3503307 None:intergenic
GGCTGTAAGGGTTATGATTT+GGG 0.332421 2.3:+3503605 MS.gene50038:CDS
GTGTTACTGGCGAGGCGGCT+TGG 0.335844 2.3:+3504009 MS.gene50038:CDS
TGGATCCTTCCCTCTACTAA+TGG 0.347290 2.3:+3502988 MS.gene50038:CDS
TGTTACTGGCGAGGCGGCTT+GGG 0.360313 2.3:+3504010 MS.gene50038:CDS
TCTCTGTCATTGACAGAGTT+AGG 0.362506 2.3:-3503807 None:intergenic
TTTCAATCCTAAGATGGTTC+TGG 0.364284 2.3:+3503300 MS.gene50038:CDS
ACATGACAATTAGACCTTTG+TGG 0.370512 2.3:-3503139 None:intergenic
CTCTTCCTCATACTCAATAC+TGG 0.372131 2.3:+3504639 MS.gene50038:CDS
AGCTTTGGTATCCACGGTTA+TGG 0.372953 2.3:-3503784 None:intergenic
ATTGACAGAGTTAGGAGCTT+TGG 0.373133 2.3:-3503799 None:intergenic
ATTGAAAACCAATATTTCAT+TGG 0.373278 2.3:+3504284 MS.gene50038:CDS
TTCAAACAATGAATGTTTCT+CGG 0.374381 2.3:-3503880 None:intergenic
GCACTTCTATGGAAAGGAAT+TGG 0.375461 2.3:+3504135 MS.gene50038:CDS
AAGCTTACGTCGAAGCAATA+AGG 0.376408 2.3:+3504240 MS.gene50038:CDS
GAAGTGCTTGTTGAGGAAAT+AGG 0.378292 2.3:-3504119 None:intergenic
GATGACCTATATATACTAAT+AGG 0.379557 2.3:+3505239 MS.gene50038:CDS
CACAAGAAAGTGAACGTGTT+TGG 0.380930 2.3:+3502834 MS.gene50038:CDS
GCATCATGCCATGGCTCTCT+TGG 0.387236 2.3:-3503978 None:intergenic
TGGAGTTCCTAGAAAGTTAT+GGG 0.388103 2.3:+3503219 MS.gene50038:CDS
TGAATGTCACCTTTGCTTAT+GGG 0.394279 2.3:-3505356 None:intergenic
CAACTCCATCTTGATGAAAC+TGG 0.398815 2.3:-3505328 None:intergenic
TGATGATGAGCAAAGATTGT+AGG 0.400183 2.3:-3503756 None:intergenic
GGGAATTTGTCATGTAATCT+AGG 0.401511 2.3:-3503735 None:intergenic
GTGGAGTTCCTAGAAAGTTA+TGG 0.405314 2.3:+3503218 MS.gene50038:CDS
GGATGTTTATAAAGCTATTG+AGG 0.411752 2.3:+3503243 MS.gene50038:CDS
CAGAAGAAGGAGTGGCTGTA+AGG 0.414409 2.3:+3503592 MS.gene50038:CDS
TTCTACCAGACAAATATTGC+AGG 0.419367 2.3:+3503933 MS.gene50038:CDS
AAGGGAAATGAAGGAGAGTA+GGG 0.420361 2.3:-3502299 None:intergenic
CTTAGTAGCTTTGTCCAACT+TGG 0.425327 2.3:-3503079 None:intergenic
GAAGGGAAATGAAGGAGAGT+AGG 0.425566 2.3:-3502300 None:intergenic
GCATGTGGGATTTCTGTTTG+AGG 0.436003 2.3:-3503531 None:intergenic
GTTCACTCCAAGCTCGTGAT+AGG 0.437935 2.3:+3504695 MS.gene50038:CDS
TCATTGGAGGGTGCCATTTG+TGG 0.442041 2.3:+3504300 MS.gene50038:CDS
GCAATGGATAAGCTCATTCA+TGG 0.442063 2.3:+3502245 None:intergenic
GATGATGAGCAAAGATTGTA+GGG 0.448753 2.3:-3503755 None:intergenic
ATCATAGAAAGTGGTGAGCC+AGG 0.450323 2.3:+3504533 MS.gene50038:CDS
CACACTGAATCTGAAATGTT+TGG 0.451106 2.3:-3502859 None:intergenic
CCTTGCAAATAGGGAAAAGA+AGG 0.453199 2.3:+3504586 MS.gene50038:CDS
CAGTATTGAGTATGAGGAAG+AGG 0.453589 2.3:-3504638 None:intergenic
ATCTTGATTGTCACATAAGC+AGG 0.455101 2.3:-3502785 None:intergenic
CTGATCCTATTAGTATATAT+AGG 0.457591 2.3:-3505244 None:intergenic
TCTTATCTTTCTGCCACAAA+TGG 0.460881 2.3:-3504313 None:intergenic
TTCATTAGAGCTCACATTGA+AGG 0.462875 2.3:-3502318 None:intergenic
AAATATTTAGTATATATTGC+AGG 0.463860 2.3:+3503271 MS.gene50038:CDS
CTGGTCTTTCAATCCTAAGA+TGG 0.467682 2.3:+3503294 MS.gene50038:CDS
TCAAAAGGAGGTTGGAAAGT+AGG 0.467738 2.3:-3503190 None:intergenic
CAATGCAGTATATCTTGAAC+TGG 0.467818 2.3:-3504464 None:intergenic
CTATCATGGGGTAAGTTACT+AGG 0.473210 2.3:-3505538 None:intergenic
GTGCAGAGAATGTGCTCAAT+AGG 0.473934 2.3:+3505458 MS.gene50038:CDS
CACAATTATCAAAAGGAGGT+TGG 0.476823 2.3:-3503198 None:intergenic
CTAAGTAGTGAAGAGTTTCA+AGG 0.476881 2.3:+3503097 MS.gene50038:CDS
ACAAGATTAAAGCAAGAGAA+AGG 0.477212 2.3:+3504387 MS.gene50038:CDS
CTGTTAGCTTTCTAAACAGT+TGG 0.477520 2.3:-3504199 None:intergenic
TATTTGTCTGGTAGAAATCA+TGG 0.479616 2.3:-3503926 None:intergenic
AAGGAAGACAGTTTGATCAA+TGG 0.480801 2.3:+3502968 MS.gene50038:CDS
TCCTATTGAGATTGCACTCA+AGG 0.481371 2.3:+3504358 MS.gene50038:CDS
AACTTTATTTCTCTAGCATG+TGG 0.485581 2.3:-3503546 None:intergenic
TAGCCCCTGCAATATTTGTC+TGG 0.486823 2.3:-3503938 None:intergenic
ATTAGGAAAATTCCAAATCA+AGG 0.487446 2.3:+3502934 MS.gene50038:CDS
ACAATGATGTATAAGTTGAT+TGG 0.489344 2.3:+3504503 MS.gene50038:CDS
GAAAACCAATATTTCATTGG+AGG 0.491937 2.3:+3504287 MS.gene50038:CDS
GCACTCCAGTATTGAGTATG+AGG 0.492928 2.3:-3504644 None:intergenic
ACCTTGAGTGCAATCTCAAT+AGG 0.493010 2.3:-3504359 None:intergenic
GTGAAGAGTTTCAAGGGCTG+AGG 0.494050 2.3:+3503104 MS.gene50038:CDS
AATCAAGGCACAACAGTTGA+AGG 0.494105 2.3:+3502949 MS.gene50038:CDS
AAGTAATCTCTCGGATGTCC+TGG 0.496223 2.3:-3504551 None:intergenic
AAAACCAATATTTCATTGGA+GGG 0.496243 2.3:+3504288 MS.gene50038:CDS
CTCTTGGACCTCCTTTGTTG+AGG 0.496416 2.3:-3503962 None:intergenic
GGAACTCCACAATTATCAAA+AGG 0.498863 2.3:-3503205 None:intergenic
GGCACTCCTTCTGGCCACAT+TGG 0.503394 2.3:-3504431 None:intergenic
AATCATACCTATCACGAGCT+TGG 0.505438 2.3:-3504702 None:intergenic
CTCACATTGAAGGGAAATGA+AGG 0.505783 2.3:-3502308 None:intergenic
AAGCAATAAGGCGTGCCGAT+AGG 0.510171 2.3:+3504252 MS.gene50038:CDS
AAGATCGATGGACGGGCAAA+GGG 0.511045 2.3:+3505280 MS.gene50038:CDS
GGCTACCAGTTTCATCAAGA+TGG 0.515157 2.3:+3505323 MS.gene50038:CDS
CAAGATAGACAATAAGAAAG+TGG 0.515400 2.3:+3502802 MS.gene50038:CDS
AAGAAATTCAAGTAATCTCT+CGG 0.518087 2.3:-3504560 None:intergenic
AAAGATCGATGGACGGGCAA+AGG 0.521722 2.3:+3505279 MS.gene50038:CDS
CATGCTAGAGAAATAAAGTT+GGG 0.529280 2.3:+3503549 MS.gene50038:CDS
GATGTTTATAAAGCTATTGA+GGG 0.530650 2.3:+3503244 MS.gene50038:CDS
AGAAGAAGGAGTGGCTGTAA+GGG 0.531289 2.3:+3503593 MS.gene50038:CDS
ACTTTATTTCTCTAGCATGT+GGG 0.537734 2.3:-3503545 None:intergenic
ATTGGAAAGTGCAAGTATAC+CGG 0.542544 2.3:+3504153 MS.gene50038:CDS
TCATTAGAGCTCACATTGAA+GGG 0.542682 2.3:-3502317 None:intergenic
TAGGGAAAAGAAGGAAAATG+AGG 0.551505 2.3:+3504595 MS.gene50038:CDS
CAGCAAATTTGGAACCAAGT+TGG 0.555393 2.3:+3503065 MS.gene50038:CDS
ATTGTTTGAAACACTTGCTG+AGG 0.558143 2.3:+3503893 MS.gene50038:CDS
TGAGGAAGAGGAGAATGTGG+TGG 0.560144 2.3:-3504626 None:intergenic
TGAACCAAAGATCGATGGAC+GGG 0.560632 2.3:+3505273 MS.gene50038:CDS
GAGGTTGGAAAGTAGGTGAA+TGG 0.561082 2.3:-3503183 None:intergenic
CAGTGAAGAAATTATGGACA+TGG 0.568985 2.3:+3505505 MS.gene50038:CDS
TCTGTGGAAGATCTAACTAA+TGG 0.569159 2.3:+3505575 MS.gene50038:CDS
TTTCCATTTATCAAGAACAA+AGG 0.570612 2.3:+3503642 MS.gene50038:CDS
ATTTAGTATATATTGCAGGC+TGG 0.570668 2.3:+3503275 MS.gene50038:CDS
GATACAAAAGCTCTAGTGAA+AGG 0.570925 2.3:+3505614 MS.gene50038:CDS
TTCAATGTACACAAACCTAT+CGG 0.572544 2.3:-3504267 None:intergenic
GCTCATTCATGGAACAATTG+AGG 0.574540 2.3:+3502256 MS.gene50038:CDS
ACATGCTAGAGAAATAAAGT+TGG 0.574919 2.3:+3503548 MS.gene50038:CDS
CAACAAGCACTTCTATGGAA+AGG 0.578353 2.3:+3504129 MS.gene50038:CDS
GTCATACCAATGTGGCCAGA+AGG 0.580529 2.3:+3504425 MS.gene50038:CDS
TGGCTAAGTGGTAATGACAC+AGG 0.580895 2.3:-3505657 None:intergenic
TAAGTAGTGAAGAGTTTCAA+GGG 0.580907 2.3:+3503098 MS.gene50038:CDS
GGAGAAGCAATCATAGAAAG+TGG 0.580963 2.3:+3504524 MS.gene50038:CDS
GTTAGGAGCTTTGGTATCCA+CGG 0.582477 2.3:-3503790 None:intergenic
TTCCATAGAAGTGCTTGTTG+AGG 0.590769 2.3:-3504126 None:intergenic
GCTCAATAGGAGATAAAATG+TGG 0.592126 2.3:+3505471 MS.gene50038:CDS
GGTGGTTTAGATTTGTGCGA+CGG 0.597565 2.3:+3503846 MS.gene50038:CDS
TCTACCAGACAAATATTGCA+GGG 0.601616 2.3:+3503934 MS.gene50038:CDS
TGAAGAGTTTCAAGGGCTGA+GGG 0.609783 2.3:+3503105 MS.gene50038:CDS
CTGAGACATGATCAATCGAC+CGG 0.610594 2.3:-3504172 None:intergenic
AAAGAAAGCAGAAGAAGGAG+TGG 0.610818 2.3:+3503584 MS.gene50038:CDS
AGTAACACAAAATGGATCTG+TGG 0.620720 2.3:+3505559 MS.gene50038:CDS
ACACAAAAGTAGTATGCAGA+AGG 0.623210 2.3:+3503709 MS.gene50038:CDS
GTGAACCAAAGATCGATGGA+CGG 0.630105 2.3:+3505272 MS.gene50038:CDS
CAAGCATGAGCATCATGCCA+TGG 0.632322 2.3:-3503987 None:intergenic
GTATGAGGAAGAGGAGAATG+TGG 0.634818 2.3:-3504629 None:intergenic
CAGTTCAAGATATACTGCAT+TGG 0.636717 2.3:+3504465 MS.gene50038:CDS
GTTGATCATCCCATAAGCAA+AGG 0.638827 2.3:+3505347 MS.gene50038:CDS
TGAAGAAATTATGGACATGG+AGG 0.639170 2.3:+3505508 MS.gene50038:CDS
CTACCAGACAAATATTGCAG+GGG 0.640062 2.3:+3503935 MS.gene50038:CDS
AGGGACACAGAAATTGCGAT+CGG 0.641781 2.3:+3505299 MS.gene50038:CDS
AAATGTGAACCAAAGATCGA+TGG 0.642298 2.3:+3505268 MS.gene50038:CDS
ACTCCACAATTATCAAAAGG+AGG 0.646785 2.3:-3503202 None:intergenic
AAGGAGGTCCAAGAGAGCCA+TGG 0.649131 2.3:+3503970 MS.gene50038:CDS
GAAGAAATTATGGACATGGA+GGG 0.652171 2.3:+3505509 MS.gene50038:CDS
TCATGCTTGTGTTACTGGCG+AGG 0.655164 2.3:+3504001 MS.gene50038:CDS
GACACAGAAATTGCGATCGG+AGG 0.656668 2.3:+3505302 MS.gene50038:CDS
GGGGCTAGCCTCAACAAAGG+AGG 0.660504 2.3:+3503954 MS.gene50038:CDS
TGCTTGTGTTACTGGCGAGG+CGG 0.660654 2.3:+3504004 MS.gene50038:CDS
GCAGGGGCTAGCCTCAACAA+AGG 0.667195 2.3:+3503951 MS.gene50038:CDS
TGGCAGAAAGATAAGAACAG+TGG 0.670376 2.3:+3504320 MS.gene50038:CDS
GGCTAAGTGGTAATGACACA+GGG 0.671767 2.3:-3505656 None:intergenic
TGTGATGAACACACATGACG+AGG 0.674406 2.3:+3503665 MS.gene50038:CDS
TATTGAGATTGCACTCAAGG+TGG 0.678261 2.3:+3504361 MS.gene50038:CDS
AGTTCCTAGAAAGTTATGGG+AGG 0.683421 2.3:+3503222 MS.gene50038:CDS
GGAAGATCTAACTAATGGTG+AGG 0.696498 2.3:+3505580 MS.gene50038:CDS
TGTATATAGTCATACCAATG+TGG 0.699010 2.3:+3504417 MS.gene50038:CDS
GGGATGCTACATTTCCACAA+AGG 0.704533 2.3:+3503125 MS.gene50038:CDS
ACGAATACAGAATGTCAATG+TGG 0.720257 2.3:+3505378 MS.gene50038:CDS
TCAATGTGGTATGAACACAC+TGG 0.796931 2.3:+3505392 MS.gene50038:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAAATAAAGAGA+AGG - chr2.3:3502394-3502413 None:intergenic 10.0%
!! TAAAATTAAGGTTTATATTA+TGG + chr2.3:3503035-3503054 MS.gene50038:CDS 10.0%
!!! TATATTGATATACATTTTTT+TGG + chr2.3:3503356-3503375 MS.gene50038:intron 10.0%
!! AAATATTTAGTATATATTGC+AGG + chr2.3:3503271-3503290 MS.gene50038:CDS 15.0%
!! ATTAAACCAACATATATTTA+TGG - chr2.3:3504731-3504750 None:intergenic 15.0%
!! ATTAAACCATAAATATATGT+TGG + chr2.3:3504722-3504741 MS.gene50038:intron 15.0%
!!! CAAATTTTGTCAATATTATA+GGG - chr2.3:3502369-3502388 None:intergenic 15.0%
!!! TCAAATTTTGTCAATATTAT+AGG - chr2.3:3502370-3502389 None:intergenic 15.0%
!! AGTTGTTGAACATATATATA+TGG - chr2.3:3505040-3505059 None:intergenic 20.0%
!! ATTGAAAACCAATATTTCAT+TGG + chr2.3:3504284-3504303 MS.gene50038:CDS 20.0%
!! CAAATCAAGAACTAAAATTA+AGG + chr2.3:3503023-3503042 MS.gene50038:CDS 20.0%
!! CAAGTGAATTTATAATACAT+AGG + chr2.3:3504870-3504889 MS.gene50038:intron 20.0%
!! CTATGTATTATAAATTCACT+TGG - chr2.3:3504872-3504891 None:intergenic 20.0%
!! TTCCAATACAAAAACTTAAT+AGG + chr2.3:3505101-3505120 MS.gene50038:intron 20.0%
!! TTTCAGTGTTTATTTGTAAA+TGG + chr2.3:3502758-3502777 MS.gene50038:intron 20.0%
!!! AATAATTGGATTTTAAAAGG+AGG + chr2.3:3504964-3504983 MS.gene50038:intron 20.0%
!!! ACAATTTTTTTTTATTGACG+TGG - chr2.3:3504904-3504923 None:intergenic 20.0%
!!! ATAATTGGATTTTAAAAGGA+GGG + chr2.3:3504965-3504984 MS.gene50038:intron 20.0%
!!! ATTAAGTTTTTGTATTGGAA+AGG - chr2.3:3505101-3505120 None:intergenic 20.0%
!!! CCAAATAATTGGATTTTAAA+AGG + chr2.3:3504961-3504980 MS.gene50038:intron 20.0%
!!! CCTTTTAAAATCCAATTATT+TGG - chr2.3:3504964-3504983 None:intergenic 20.0%
!!! CTTAATTTTAGTTCTTGATT+TGG - chr2.3:3503025-3503044 None:intergenic 20.0%
!!! TGATATACATTTTTTTGGTT+AGG + chr2.3:3503361-3503380 MS.gene50038:intron 20.0%
! AAAACAACATGTACCATATT+AGG + chr2.3:3502917-3502936 MS.gene50038:CDS 25.0%
! AAAACCAATATTTCATTGGA+GGG + chr2.3:3504288-3504307 MS.gene50038:CDS 25.0%
! AAGAAATTCAAGTAATCTCT+CGG - chr2.3:3504563-3504582 None:intergenic 25.0%
! ACAGAAAAATAGAAGATTCA+TGG + chr2.3:3504667-3504686 MS.gene50038:CDS 25.0%
! ATATATATATGGCTTGATCA+TGG - chr2.3:3505029-3505048 None:intergenic 25.0%
! ATTAGGAAAATTCCAAATCA+AGG + chr2.3:3502934-3502953 MS.gene50038:CDS 25.0%
! ATTGAAGAAATAATAACAGG+AGG - chr2.3:3502595-3502614 None:intergenic 25.0%
! CACATTATAGAATATGTAGT+TGG - chr2.3:3502710-3502729 None:intergenic 25.0%
! CTGATCCTATTAGTATATAT+AGG - chr2.3:3505247-3505266 None:intergenic 25.0%
! GACATTGAAGAAATAATAAC+AGG - chr2.3:3502598-3502617 None:intergenic 25.0%
! GATGACCTATATATACTAAT+AGG + chr2.3:3505239-3505258 MS.gene50038:CDS 25.0%
! GATGTTTATAAAGCTATTGA+GGG + chr2.3:3503244-3503263 MS.gene50038:CDS 25.0%
! TTCAAACAATGAATGTTTCT+CGG - chr2.3:3503883-3503902 None:intergenic 25.0%
! TTTCCATTTATCAAGAACAA+AGG + chr2.3:3503642-3503661 MS.gene50038:CDS 25.0%
!! AATAGGAATGAGATTTTCTA+AGG - chr2.3:3504105-3504124 None:intergenic 25.0%
!! AGAGAAATTATGAGCTTTTT+GGG + chr2.3:3503825-3503844 MS.gene50038:CDS 25.0%
!! CTCCTATTAAGTTTTTGTAT+TGG - chr2.3:3505106-3505125 None:intergenic 25.0%
!! TAGCTAATTTTGAACAAAGA+TGG + chr2.3:3504039-3504058 MS.gene50038:CDS 25.0%
!!! ACAATGATGTATAAGTTGAT+TGG + chr2.3:3504503-3504522 MS.gene50038:CDS 25.0%
!!! GATTTGGAATTTTCCTAATA+TGG - chr2.3:3502933-3502952 None:intergenic 25.0%
ACAAGATTAAAGCAAGAGAA+AGG + chr2.3:3504387-3504406 MS.gene50038:CDS 30.0%
ACACCTTTGTTCTTGATAAA+TGG - chr2.3:3503648-3503667 None:intergenic 30.0%
ACATGCTAGAGAAATAAAGT+TGG + chr2.3:3503548-3503567 MS.gene50038:CDS 30.0%
AGTTAAACCAAGATCATGAA+TGG - chr2.3:3505185-3505204 None:intergenic 30.0%
ATTTAGTATATATTGCAGGC+TGG + chr2.3:3503275-3503294 MS.gene50038:CDS 30.0%
CAAGATAGACAATAAGAAAG+TGG + chr2.3:3502802-3502821 MS.gene50038:CDS 30.0%
CATGCTAGAGAAATAAAGTT+GGG + chr2.3:3503549-3503568 MS.gene50038:CDS 30.0%
GAAAACCAATATTTCATTGG+AGG + chr2.3:3504287-3504306 MS.gene50038:CDS 30.0%
GGATGTTTATAAAGCTATTG+AGG + chr2.3:3503243-3503262 MS.gene50038:CDS 30.0%
TAAGTAGTGAAGAGTTTCAA+GGG + chr2.3:3503098-3503117 MS.gene50038:CDS 30.0%
TAGATCCAAAATACGAGTAA+GGG + chr2.3:3504937-3504956 MS.gene50038:intron 30.0%
TATTTGTCTGGTAGAAATCA+TGG - chr2.3:3503929-3503948 None:intergenic 30.0%
TGTATATAGTCATACCAATG+TGG + chr2.3:3504417-3504436 MS.gene50038:CDS 30.0%
TGTTACAAGTATGACTATAG+AGG - chr2.3:3502418-3502437 None:intergenic 30.0%
TTAGATCCAAAATACGAGTA+AGG + chr2.3:3504936-3504955 MS.gene50038:intron 30.0%
TTCAATGTACACAAACCTAT+CGG - chr2.3:3504270-3504289 None:intergenic 30.0%
TTGAAAAAGAAAGCAGAAGA+AGG + chr2.3:3503579-3503598 MS.gene50038:CDS 30.0%
! AACTTTATTTCTCTAGCATG+TGG - chr2.3:3503549-3503568 None:intergenic 30.0%
! ACTTTATTTCTCTAGCATGT+GGG - chr2.3:3503548-3503567 None:intergenic 30.0%
! AGACTTTTGTACACAAAAGT+GGG + chr2.3:3504794-3504813 MS.gene50038:intron 30.0%
! ATTTCTTTTGCCTTGCAAAT+AGG + chr2.3:3504576-3504595 MS.gene50038:CDS 30.0%
! CAGAGAAATTATGAGCTTTT+TGG + chr2.3:3503824-3503843 MS.gene50038:CDS 30.0%
! TACCATTTTCCATTAGTAGA+GGG - chr2.3:3503000-3503019 None:intergenic 30.0%
! TAGACTTTTGTACACAAAAG+TGG + chr2.3:3504793-3504812 MS.gene50038:intron 30.0%
! TTACCATTTTCCATTAGTAG+AGG - chr2.3:3503001-3503020 None:intergenic 30.0%
! TTTCTTTTGCCTTGCAAATA+GGG + chr2.3:3504577-3504596 MS.gene50038:CDS 30.0%
!! CATTTTGTGTTACTATCATG+GGG - chr2.3:3505553-3505572 None:intergenic 30.0%
!! CCATTTTGTGTTACTATCAT+GGG - chr2.3:3505554-3505573 None:intergenic 30.0%
!! TCCATTTTGTGTTACTATCA+TGG - chr2.3:3505555-3505574 None:intergenic 30.0%
!!! ACATGTTGTTTTCAGTGTAA+TGG - chr2.3:3502909-3502928 None:intergenic 30.0%
!!! GTTTTTTGTCCAAATAAGAC+TGG + chr2.3:3502450-3502469 MS.gene50038:intron 30.0%
!!! TGTTGGTTTAATTGCAGTTT+TGG + chr2.3:3504739-3504758 MS.gene50038:intron 30.0%
AAATGTGAACCAAAGATCGA+TGG + chr2.3:3505268-3505287 MS.gene50038:CDS 35.0%
AACGAATCTTAGTATCAGCT+CGG + chr2.3:3503407-3503426 MS.gene50038:intron 35.0%
AAGGAAGACAGTTTGATCAA+TGG + chr2.3:3502968-3502987 MS.gene50038:CDS 35.0%
AAGTCTACAAATTTCGTGAG+CGG - chr2.3:3504780-3504799 None:intergenic 35.0%
ACACAAAAGTAGTATGCAGA+AGG + chr2.3:3503709-3503728 MS.gene50038:CDS 35.0%
ACATGACAATTAGACCTTTG+TGG - chr2.3:3503142-3503161 None:intergenic 35.0%
ACGAATACAGAATGTCAATG+TGG + chr2.3:3505378-3505397 MS.gene50038:CDS 35.0%
ACTCCACAATTATCAAAAGG+AGG - chr2.3:3503205-3503224 None:intergenic 35.0%
AGTAACACAAAATGGATCTG+TGG + chr2.3:3505559-3505578 MS.gene50038:CDS 35.0%
AGTATATATAGGTCATCCAC+TGG - chr2.3:3505236-3505255 None:intergenic 35.0%
ATATGTACCAGAACCATCTT+AGG - chr2.3:3503310-3503329 None:intergenic 35.0%
ATCTTGATTGTCACATAAGC+AGG - chr2.3:3502788-3502807 None:intergenic 35.0%
CAATGCAGTATATCTTGAAC+TGG - chr2.3:3504467-3504486 None:intergenic 35.0%
CACAATTATCAAAAGGAGGT+TGG - chr2.3:3503201-3503220 None:intergenic 35.0%
CAGTGAAGAAATTATGGACA+TGG + chr2.3:3505505-3505524 MS.gene50038:CDS 35.0%
CAGTTCAAGATATACTGCAT+TGG + chr2.3:3504465-3504484 MS.gene50038:CDS 35.0%
CCCATGATAGTAACACAAAA+TGG + chr2.3:3505551-3505570 MS.gene50038:CDS 35.0%
CTAAGTAGTGAAGAGTTTCA+AGG + chr2.3:3503097-3503116 MS.gene50038:CDS 35.0%
CTACAGCAGTGAAGAAATTA+TGG + chr2.3:3505499-3505518 MS.gene50038:CDS 35.0%
GAAAACACCATTCATGATCT+TGG + chr2.3:3505175-3505194 MS.gene50038:intron 35.0%
GAAGAAATTATGGACATGGA+GGG + chr2.3:3505509-3505528 MS.gene50038:CDS 35.0%
GATGATGAGCAAAGATTGTA+GGG - chr2.3:3503758-3503777 None:intergenic 35.0%
GCTCAATAGGAGATAAAATG+TGG + chr2.3:3505471-3505490 MS.gene50038:CDS 35.0%
GGAACTCCACAATTATCAAA+AGG - chr2.3:3503208-3503227 None:intergenic 35.0%
GGGAATTTGTCATGTAATCT+AGG - chr2.3:3503738-3503757 None:intergenic 35.0%
TAGGGAAAAGAAGGAAAATG+AGG + chr2.3:3504595-3504614 MS.gene50038:CDS 35.0%
TCATCAAAAAACCATAACCG+TGG + chr2.3:3503773-3503792 MS.gene50038:CDS 35.0%
TCATTAGAGCTCACATTGAA+GGG - chr2.3:3502320-3502339 None:intergenic 35.0%
TCTACCAGACAAATATTGCA+GGG + chr2.3:3503934-3503953 MS.gene50038:CDS 35.0%
TCTGTGGAAGATCTAACTAA+TGG + chr2.3:3505575-3505594 MS.gene50038:CDS 35.0%
TCTTATCTTTCTGCCACAAA+TGG - chr2.3:3504316-3504335 None:intergenic 35.0%
TGAAGAAATTATGGACATGG+AGG + chr2.3:3505508-3505527 MS.gene50038:CDS 35.0%
TGAATGTCACCTTTGCTTAT+GGG - chr2.3:3505359-3505378 None:intergenic 35.0%
TGCACACATTCTAAACTTTC+TGG - chr2.3:3505443-3505462 None:intergenic 35.0%
TGGAGTTCCTAGAAAGTTAT+GGG + chr2.3:3503219-3503238 MS.gene50038:CDS 35.0%
TTCATTAGAGCTCACATTGA+AGG - chr2.3:3502321-3502340 None:intergenic 35.0%
TTCCCTCTACTAATGGAAAA+TGG + chr2.3:3502995-3503014 MS.gene50038:CDS 35.0%
TTCTACCAGACAAATATTGC+AGG + chr2.3:3503933-3503952 MS.gene50038:CDS 35.0%
TTGTCCAAATAAGACTGGTA+GGG + chr2.3:3502455-3502474 MS.gene50038:intron 35.0%
TTTCAATCCTAAGATGGTTC+TGG + chr2.3:3503300-3503319 MS.gene50038:CDS 35.0%
TTTGTCCAAATAAGACTGGT+AGG + chr2.3:3502454-3502473 MS.gene50038:intron 35.0%
! AGTTTTCAGAGTTCGAACTT+TGG + chr2.3:3502568-3502587 MS.gene50038:intron 35.0%
! ATATGGCTTGATCATGGTTT+TGG - chr2.3:3505023-3505042 None:intergenic 35.0%
! ATTGGAAAGTGCAAGTATAC+CGG + chr2.3:3504153-3504172 MS.gene50038:CDS 35.0%
! ATTGTTTGAAACACTTGCTG+AGG + chr2.3:3503893-3503912 MS.gene50038:CDS 35.0%
! ATTTTCCATTAGTAGAGGGA+AGG - chr2.3:3502996-3503015 None:intergenic 35.0%
! CACACTGAATCTGAAATGTT+TGG - chr2.3:3502862-3502881 None:intergenic 35.0%
! GATACAAAAGCTCTAGTGAA+AGG + chr2.3:3505614-3505633 MS.gene50038:CDS 35.0%
! TGATGATGAGCAAAGATTGT+AGG - chr2.3:3503759-3503778 None:intergenic 35.0%
! TGTTTTCAGTGTAATGGTGA+TGG - chr2.3:3502903-3502922 None:intergenic 35.0%
! TTCACTAGAGCTTTTGTATC+AGG - chr2.3:3505614-3505633 None:intergenic 35.0%
!! CAACCTCCTTTTGATAATTG+TGG + chr2.3:3503199-3503218 MS.gene50038:CDS 35.0%
!! CTGTTAGCTTTCTAAACAGT+TGG - chr2.3:3504202-3504221 None:intergenic 35.0%
!! GAAATTATGAGCTTTTTGGG+TGG + chr2.3:3503828-3503847 MS.gene50038:CDS 35.0%
!!! AGATTTTCTAAGGTGTTTGC+AGG - chr2.3:3504095-3504114 None:intergenic 35.0%
!!! GATTTTCTAAGGTGTTTGCA+GGG - chr2.3:3504094-3504113 None:intergenic 35.0%
AAAGAAAGCAGAAGAAGGAG+TGG + chr2.3:3503584-3503603 MS.gene50038:CDS 40.0%
AAGCTTACGTCGAAGCAATA+AGG + chr2.3:3504240-3504259 MS.gene50038:CDS 40.0%
AAGGGAAATGAAGGAGAGTA+GGG - chr2.3:3502302-3502321 None:intergenic 40.0%
AATCAAGGCACAACAGTTGA+AGG + chr2.3:3502949-3502968 MS.gene50038:CDS 40.0%
AATCATACCTATCACGAGCT+TGG - chr2.3:3504705-3504724 None:intergenic 40.0%
ACATCCTCCCATAACTTTCT+AGG - chr2.3:3503229-3503248 None:intergenic 40.0%
ACCTTGAGTGCAATCTCAAT+AGG - chr2.3:3504362-3504381 None:intergenic 40.0%
AGTCTACAAATTTCGTGAGC+GGG - chr2.3:3504779-3504798 None:intergenic 40.0%
AGTTCCTAGAAAGTTATGGG+AGG + chr2.3:3503222-3503241 MS.gene50038:CDS 40.0%
ATCTTAGTATCAGCTCGGTT+TGG + chr2.3:3503412-3503431 MS.gene50038:intron 40.0%
ATGGTTCAAGCCAGCAAATT+TGG + chr2.3:3503054-3503073 MS.gene50038:CDS 40.0%
ATTGACAGAGTTAGGAGCTT+TGG - chr2.3:3503802-3503821 None:intergenic 40.0%
CAACAAGCACTTCTATGGAA+AGG + chr2.3:3504129-3504148 MS.gene50038:CDS 40.0%
CAACTCCATCTTGATGAAAC+TGG - chr2.3:3505331-3505350 None:intergenic 40.0%
CAACTTGGTTCCAAATTTGC+TGG - chr2.3:3503067-3503086 None:intergenic 40.0%
CACAAGAAAGTGAACGTGTT+TGG + chr2.3:3502834-3502853 MS.gene50038:CDS 40.0%
CCAACACAAGGATCGTATTA+AGG - chr2.3:3503495-3503514 None:intergenic 40.0%
CCTTAATACGATCCTTGTGT+TGG + chr2.3:3503492-3503511 MS.gene50038:intron 40.0%
CCTTGCAAATAGGGAAAAGA+AGG + chr2.3:3504586-3504605 MS.gene50038:CDS 40.0%
CGAGTAAGGGACCAAATAAT+TGG + chr2.3:3504950-3504969 MS.gene50038:intron 40.0%
CTACCAGACAAATATTGCAG+GGG + chr2.3:3503935-3503954 MS.gene50038:CDS 40.0%
CTATCATGGGGTAAGTTACT+AGG - chr2.3:3505541-3505560 None:intergenic 40.0%
CTCACATTGAAGGGAAATGA+AGG - chr2.3:3502311-3502330 None:intergenic 40.0%
CTCTTCCTCATACTCAATAC+TGG + chr2.3:3504639-3504658 MS.gene50038:CDS 40.0%
GATACTAAGATTCGTTGCAC+CGG - chr2.3:3503403-3503422 None:intergenic 40.0%
GCACTTCTATGGAAAGGAAT+TGG + chr2.3:3504135-3504154 MS.gene50038:CDS 40.0%
GCTCATTCATGGAACAATTG+AGG + chr2.3:3502256-3502275 MS.gene50038:CDS 40.0%
GGAAGATCTAACTAATGGTG+AGG + chr2.3:3505580-3505599 MS.gene50038:CDS 40.0%
GGAGAAGCAATCATAGAAAG+TGG + chr2.3:3504524-3504543 MS.gene50038:CDS 40.0%
GGCTGTAAGGGTTATGATTT+GGG + chr2.3:3503605-3503624 MS.gene50038:CDS 40.0%
GTGAATGTCACCTTTGCTTA+TGG - chr2.3:3505360-3505379 None:intergenic 40.0%
GTGGAGTTCCTAGAAAGTTA+TGG + chr2.3:3503218-3503237 MS.gene50038:CDS 40.0%
GTTGATCATCCCATAAGCAA+AGG + chr2.3:3505347-3505366 MS.gene50038:CDS 40.0%
TAGTTCAAGAAAATCGAGCC+TGG - chr2.3:3503459-3503478 None:intergenic 40.0%
TATTGAGATTGCACTCAAGG+TGG + chr2.3:3504361-3504380 MS.gene50038:CDS 40.0%
TCAAAAGGAGGTTGGAAAGT+AGG - chr2.3:3503193-3503212 None:intergenic 40.0%
TCAACTGTTGTGCCTTGATT+TGG - chr2.3:3502949-3502968 None:intergenic 40.0%
TCAATGTGGTATGAACACAC+TGG + chr2.3:3505392-3505411 MS.gene50038:CDS 40.0%
TCCTATTGAGATTGCACTCA+AGG + chr2.3:3504358-3504377 MS.gene50038:CDS 40.0%
TCTCTGTCATTGACAGAGTT+AGG - chr2.3:3503810-3503829 None:intergenic 40.0%
TGGCAGAAAGATAAGAACAG+TGG + chr2.3:3504320-3504339 MS.gene50038:CDS 40.0%
TGGCTGTAAGGGTTATGATT+TGG + chr2.3:3503604-3503623 MS.gene50038:CDS 40.0%
TGTCCAAATAAGACTGGTAG+GGG + chr2.3:3502456-3502475 MS.gene50038:intron 40.0%
TTCCTCAACAAGCACTTCTA+TGG + chr2.3:3504124-3504143 MS.gene50038:CDS 40.0%
TTCTTGAACTAGACCATGAG+CGG + chr2.3:3503468-3503487 MS.gene50038:intron 40.0%
TTGGATGATTCTACATCAGC+AGG - chr2.3:3504853-3504872 None:intergenic 40.0%
TTGTACACAAAAGTGGGACA+TGG + chr2.3:3504800-3504819 MS.gene50038:intron 40.0%
! CAGCAAATTTGGAACCAAGT+TGG + chr2.3:3503065-3503084 MS.gene50038:CDS 40.0%
! CAGTATTGAGTATGAGGAAG+AGG - chr2.3:3504641-3504660 None:intergenic 40.0%
! CCTTCTTTTCCCTATTTGCA+AGG - chr2.3:3504589-3504608 None:intergenic 40.0%
! CTGGTCTTTCAATCCTAAGA+TGG + chr2.3:3503294-3503313 MS.gene50038:CDS 40.0%
! GAAGTGCTTGTTGAGGAAAT+AGG - chr2.3:3504122-3504141 None:intergenic 40.0%
! TCTTGAACTGGTTCACTTTC+AGG - chr2.3:3504455-3504474 None:intergenic 40.0%
! TTGGTCCCTTACTCGTATTT+TGG - chr2.3:3504945-3504964 None:intergenic 40.0%
!! CTTAGTAGCTTTGTCCAACT+TGG - chr2.3:3503082-3503101 None:intergenic 40.0%
!! TTCCATAGAAGTGCTTGTTG+AGG - chr2.3:3504129-3504148 None:intergenic 40.0%
AAGTAATCTCTCGGATGTCC+TGG - chr2.3:3504554-3504573 None:intergenic 45.0%
AGAAGAAGGAGTGGCTGTAA+GGG + chr2.3:3503593-3503612 MS.gene50038:CDS 45.0%
AGGGACACAGAAATTGCGAT+CGG + chr2.3:3505299-3505318 MS.gene50038:CDS 45.0%
ATCATAGAAAGTGGTGAGCC+AGG + chr2.3:3504533-3504552 MS.gene50038:CDS 45.0%
ATCGTATTAAGGACCGCTCA+TGG - chr2.3:3503484-3503503 None:intergenic 45.0%
CTGAGACATGATCAATCGAC+CGG - chr2.3:3504175-3504194 None:intergenic 45.0%
GAAGGGAAATGAAGGAGAGT+AGG - chr2.3:3502303-3502322 None:intergenic 45.0%
GAATCATTAGCGATTCAGCC+AGG + chr2.3:3503438-3503457 MS.gene50038:intron 45.0%
GAGGTTGGAAAGTAGGTGAA+TGG - chr2.3:3503186-3503205 None:intergenic 45.0%
GATGCTCATGCTTGTGTTAC+TGG + chr2.3:3503996-3504015 MS.gene50038:CDS 45.0%
GCATGTGGGATTTCTGTTTG+AGG - chr2.3:3503534-3503553 None:intergenic 45.0%
GGCACCCTCCAATGAAATAT+TGG - chr2.3:3504295-3504314 None:intergenic 45.0%
GGCTACCAGTTTCATCAAGA+TGG + chr2.3:3505323-3505342 MS.gene50038:CDS 45.0%
GGGATGCTACATTTCCACAA+AGG + chr2.3:3503125-3503144 MS.gene50038:CDS 45.0%
GGTGGTTTAGATTTGTGCGA+CGG + chr2.3:3503846-3503865 MS.gene50038:CDS 45.0%
GTATGAGGAAGAGGAGAATG+TGG - chr2.3:3504632-3504651 None:intergenic 45.0%
GTGAACCAAAGATCGATGGA+CGG + chr2.3:3505272-3505291 MS.gene50038:CDS 45.0%
GTGCAGAGAATGTGCTCAAT+AGG + chr2.3:3505458-3505477 MS.gene50038:CDS 45.0%
TAGCCCCTGCAATATTTGTC+TGG - chr2.3:3503941-3503960 None:intergenic 45.0%
TGAACCAAAGATCGATGGAC+GGG + chr2.3:3505273-3505292 MS.gene50038:CDS 45.0%
TGAAGAGTTTCAAGGGCTGA+GGG + chr2.3:3503105-3503124 MS.gene50038:CDS 45.0%
TGGATCCTTCCCTCTACTAA+TGG + chr2.3:3502988-3503007 MS.gene50038:CDS 45.0%
TGTGATGAACACACATGACG+AGG + chr2.3:3503665-3503684 MS.gene50038:CDS 45.0%
TTGCTTCGACGTAAGCTTCA+TGG - chr2.3:3504238-3504257 None:intergenic 45.0%
! AGCTTTGGTATCCACGGTTA+TGG - chr2.3:3503787-3503806 None:intergenic 45.0%
! GCACTCCAGTATTGAGTATG+AGG - chr2.3:3504647-3504666 None:intergenic 45.0%
! GTTAGGAGCTTTGGTATCCA+CGG - chr2.3:3503793-3503812 None:intergenic 45.0%
! GTTTTTGTTCCTTGCACCAG+TGG + chr2.3:3505217-3505236 MS.gene50038:intron 45.0%
! TCTGAAACAGACAGCTCAGT+TGG - chr2.3:3502631-3502650 None:intergenic 45.0%
!! AGTCCCCTACCAGTCTTATT+TGG - chr2.3:3502462-3502481 None:intergenic 45.0%
!!! AGGTTTTGAAACCACTGAGC+CGG + chr2.3:3503381-3503400 MS.gene50038:intron 45.0%
AAAGATCGATGGACGGGCAA+AGG + chr2.3:3505279-3505298 MS.gene50038:CDS 50.0%
AAGATCGATGGACGGGCAAA+GGG + chr2.3:3505280-3505299 MS.gene50038:CDS 50.0%
ATAGGTCATCCACTGGTGCA+AGG - chr2.3:3505229-3505248 None:intergenic 50.0%
CAAGCATGAGCATCATGCCA+TGG - chr2.3:3503990-3504009 None:intergenic 50.0%
CAGAAGAAGGAGTGGCTGTA+AGG + chr2.3:3503592-3503611 MS.gene50038:CDS 50.0%
CTAACCTGCACACCAACACA+AGG - chr2.3:3503507-3503526 None:intergenic 50.0%
CTCTTGGACCTCCTTTGTTG+AGG - chr2.3:3503965-3503984 None:intergenic 50.0%
GACACAGAAATTGCGATCGG+AGG + chr2.3:3505302-3505321 MS.gene50038:CDS 50.0%
GTCATACCAATGTGGCCAGA+AGG + chr2.3:3504425-3504444 MS.gene50038:CDS 50.0%
GTGAAGAGTTTCAAGGGCTG+AGG + chr2.3:3503104-3503123 MS.gene50038:CDS 50.0%
GTTCACTCCAAGCTCGTGAT+AGG + chr2.3:3504695-3504714 MS.gene50038:CDS 50.0%
TCACTTTCAGGCACTCCTTC+TGG - chr2.3:3504443-3504462 None:intergenic 50.0%
TGAGGAAGAGGAGAATGTGG+TGG - chr2.3:3504629-3504648 None:intergenic 50.0%
TTTGCCCGTCCATCGATCTT+TGG - chr2.3:3505280-3505299 None:intergenic 50.0%
! AAGCAATAAGGCGTGCCGAT+AGG + chr2.3:3504252-3504271 MS.gene50038:CDS 50.0%
! TCATGCTTGTGTTACTGGCG+AGG + chr2.3:3504001-3504020 MS.gene50038:CDS 50.0%
!! TCATTGGAGGGTGCCATTTG+TGG + chr2.3:3504300-3504319 MS.gene50038:CDS 50.0%
AAGGAGGTCCAAGAGAGCCA+TGG + chr2.3:3503970-3503989 MS.gene50038:CDS 55.0%
GCATCATGCCATGGCTCTCT+TGG - chr2.3:3503981-3504000 None:intergenic 55.0%
! CGATCCTTGTGTTGGTGTGC+AGG + chr2.3:3503500-3503519 MS.gene50038:intron 55.0%
! TGCTTGTGTTACTGGCGAGG+CGG + chr2.3:3504004-3504023 MS.gene50038:CDS 55.0%
GGCACTCCTTCTGGCCACAT+TGG - chr2.3:3504434-3504453 None:intergenic 60.0%
TGTTACTGGCGAGGCGGCTT+GGG + chr2.3:3504010-3504029 MS.gene50038:CDS 60.0%
!! GATTCGTTGCACCGGCTCAG+TGG - chr2.3:3503395-3503414 None:intergenic 60.0%
!! GCAGGGGCTAGCCTCAACAA+AGG + chr2.3:3503951-3503970 MS.gene50038:CDS 60.0%
!! GGGGCTAGCCTCAACAAAGG+AGG + chr2.3:3503954-3503973 MS.gene50038:CDS 60.0%
! GTGTTACTGGCGAGGCGGCT+TGG + chr2.3:3504009-3504028 MS.gene50038:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3502248 3505676 3502248 ID=MS.gene50038
chr2.3 mRNA 3502248 3505676 3502248 ID=MS.gene50038.t1;Parent=MS.gene50038
chr2.3 exon 3502248 3502325 3502248 ID=MS.gene50038.t1.exon1;Parent=MS.gene50038.t1
chr2.3 CDS 3502248 3502325 3502248 ID=cds.MS.gene50038.t1;Parent=MS.gene50038.t1
chr2.3 exon 3502764 3503321 3502764 ID=MS.gene50038.t1.exon2;Parent=MS.gene50038.t1
chr2.3 CDS 3502764 3503321 3502764 ID=cds.MS.gene50038.t1;Parent=MS.gene50038.t1
chr2.3 exon 3503522 3504716 3503522 ID=MS.gene50038.t1.exon3;Parent=MS.gene50038.t1
chr2.3 CDS 3503522 3504716 3503522 ID=cds.MS.gene50038.t1;Parent=MS.gene50038.t1
chr2.3 exon 3505237 3505676 3505237 ID=MS.gene50038.t1.exon4;Parent=MS.gene50038.t1
chr2.3 CDS 3505237 3505676 3505237 ID=cds.MS.gene50038.t1;Parent=MS.gene50038.t1
Gene Sequence

>MS.gene50038

ATGGATAAGCTCATTCATGGAACAATTGAGGCTACTGTCTTCAATGCAACTCCCTACTCTCCTTCATTTCCCTTCAATGTGAGCTCTAATGAACTCTTAAGATTAAATATATTATGATCCCTATAATATTGACAAAATTTGATCCTTCTCTTTATTTTTTTTTTATTCCTCTATAGTCATACTTGTAACAATATTTTGTTTTGTTTTTTGTCCAAATAAGACTGGTAGGGGACTAAAAAGTAAAAATACACAACTTTATTAAATCTATGAAATGAAAATAATTTTTTTTATTGTTTATTGATTGTTTATTGATAAATGTTAGTTTTCAGAGTTCGAACTTTGGACCTCCTGTTATTATTTCTTCAATGTCTCTTAGCTCACCAACTGAGCTGTCTGTTTCAGACTTAAATAAATAATTTGTTTATAGAGTTAAACTAAGCTTTGTCAATTTTATAGAAACCAACTACATATTCTATAATGTGAACTCATAAAATATGTCAATTTTTGTGTTTTCAGTGTTTATTTGTAAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAATAAGAAAGTGGCAAAAACAACACAAGAAAGTGAACGTGTTTGGAACCAAACATTTCAGATTCAGTGTGCTCATCTAGCTGATTCAACCATCACCATTACACTGAAAACAACATGTACCATATTAGGAAAATTCCAAATCAAGGCACAACAGTTGAAGGAAGACAGTTTGATCAATGGATCCTTCCCTCTACTAATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAGCCAGCAAATTTGGAACCAAGTTGGACAAAGCTACTAAGTAGTGAAGAGTTTCAAGGGCTGAGGGATGCTACATTTCCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCACCATTCACCTACTTTCCAACCTCCTTTTGATAATTGTGGAGTTCCTAGAAAGTTATGGGAGGATGTTTATAAAGCTATTGAGGGTGCAAAATATTTAGTATATATTGCAGGCTGGTCTTTCAATCCTAAGATGGTTCTGGTACATATATAATCTCATTTCATACTCTACATTTTATATTGATATACATTTTTTTGGTTAGGTTTTGAAACCACTGAGCCGGTGCAACGAATCTTAGTATCAGCTCGGTTTGGAACGAATCATTAGCGATTCAGCCAGGCTCGATTTTCTTGAACTAGACCATGAGCGGTCCTTAATACGATCCTTGTGTTGGTGTGCAGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAATAAAGTTGGGCGAGCTATTGAAAAAGAAAGCAGAAGAAGGAGTGGCTGTAAGGGTTATGATTTGGGATGATGAAACATCATTTCCATTTATCAAGAACAAAGGTGTGATGAACACACATGACGAGGAAGCTTTTGCATACTTTAAACACACAAAAGTAGTATGCAGAAGGTGTCCTAGATTACATGACAAATTCCCTACAATCTTTGCTCATCATCAAAAAACCATAACCGTGGATACCAAAGCTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGCGACGGTCGATATGATACCGAGAAACATTCATTGTTTGAAACACTTGCTGAGGAATCACATTACCATGATTTCTACCAGACAAATATTGCAGGGGCTAGCCTCAACAAAGGAGGTCCAAGAGAGCCATGGCATGATGCTCATGCTTGTGTTACTGGCGAGGCGGCTTGGGATGTGTTAGCTAATTTTGAACAAAGATGGACAAAGCAATGTGATTCATCTCTTCTAGTCCCTGCAAACACCTTAGAAAATCTCATTCCTATTTCCTCAACAAGCACTTCTATGGAAAGGAATTGGAAAGTGCAAGTATACCGGTCGATTGATCATGTCTCAGCTAGCCAACTGTTTAGAAAGCTAACAGTTGAGAGTAGTATCCATGAAGCTTACGTCGAAGCAATAAGGCGTGCCGATAGGTTTGTGTACATTGAAAACCAATATTTCATTGGAGGGTGCCATTTGTGGCAGAAAGATAAGAACAGTGGATGCACAAATTTGATTCCTATTGAGATTGCACTCAAGGTGGTCAACAAGATTAAAGCAAGAGAAAGGTTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATCATAGAAAGTGGTGAGCCAGGACATCCGAGAGATTACTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAGGAATATCTTCCACCACATTCTCCTCTTCCTCATACTCAATACTGGAGTGCACAGAAAAATAGAAGATTCATGGTTTATGTTCACTCCAAGCTCGTGATAGGTATGATTAAACCATAAATATATGTTGGTTTAATTGCAGTTTTGGTCATCATATTTTCACCCGCTCACGAAATTTGTAGACTTTTGTACACAAAAGTGGGACATGGCAAATTTTCTATTGACGTGTCATAAAACCTGCTGATGTAGAATCATCCAAGTGAATTTATAATACATAGGTTTCTATGCCACGTCAATAAAAAAAAATTGTCATGTTGTCACTTTAGATCCAAAATACGAGTAAGGGACCAAATAATTGGATTTTAAAAGGAGGGATCGATTTCGTAAGCGAGAGAAAATAAGAAGACCAAAACCATGATCAAGCCATATATATATGTTCAACAACTAACTACTGTCACTATGTATGTTATTGTTAGCTATTCAACCTTTCCAATACAAAAACTTAATAGGAGTGATTTTTTACAATTAAATTCATTGCAATAACTCATTTTAGAAAGAAGAGAAAACACCATTCATGATCTTGGTTTAACTAAAATGTGTTTTGTTTTTGTTCCTTGCACCAGTGGATGACCTATATATACTAATAGGATCAGCAAATGTGAACCAAAGATCGATGGACGGGCAAAGGGACACAGAAATTGCGATCGGAGGCTACCAGTTTCATCAAGATGGAGTTGATCATCCCATAAGCAAAGGTGACATTCACGAATACAGAATGTCAATGTGGTATGAACACACTGGTAGTGCTGAGAAGTTGTTTTTAGAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGCTCAATAGGAGATAAAATGTGGAAAATCTACAGCAGTGAAGAAATTATGGACATGGAGGGTGTGCACCTAGTAACTTACCCCATGATAGTAACACAAAATGGATCTGTGGAAGATCTAACTAATGGTGAGGATCATTTTCCTGATACAAAAGCTCTAGTGAAAGGAACAAGATCAAAATTATTACCCTGTGTCATTACCACTTAG
Protein sequence

>MS.gene50038.t1

MDKLIHGTIEATVFNATPYSPSFPFNCLFVNGKPAYVTIKIDNKKVAKTTQESERVWNQTFQIQCAHLADSTITITLKTTCTILGKFQIKAQQLKEDSLINGSFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEFQGLRDATFPQRSNCHVKLYHDAHHSPTFQPPFDNCGVPRKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSFPFIKNKGVMNTHDEEAFAYFKHTKVVCRRCPRLHDKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFETLAEESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWDVLANFEQRWTKQCDSSLLVPANTLENLIPISSTSTSMERNWKVQVYRSIDHVSASQLFRKLTVESSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDKNSGCTNLIPIEIALKVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKENEEYLPPHSPLPHTQYWSAQKNRRFMVYVHSKLVIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQFHQDGVDHPISKGDIHEYRMSMWYEHTGSAEKLFLEPESLECVQRMCSIGDKMWKIYSSEEIMDMEGVHLVTYPMIVTQNGSVEDLTNGEDHFPDTKALVKGTRSKLLPCVITT