AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50187

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50187.t1 MTR_5g071520 96.574 467 16 0 1 467 59 525 0.0 943
MS.gene50187.t1 MTR_2g098790 70.968 465 126 1 1 465 58 513 0.0 705
MS.gene50187.t1 MTR_2g098540 71.828 465 122 1 1 465 51 506 0.0 702
MS.gene50187.t1 MTR_2g098540 71.828 465 122 1 1 465 7 462 0.0 700
MS.gene50187.t1 MTR_2g098520 69.677 465 132 1 1 465 54 509 0.0 682
MS.gene50187.t1 MTR_6g078450 68.602 465 137 1 1 465 56 511 0.0 670
MS.gene50187.t1 MTR_4g066580 68.602 465 137 1 1 465 59 514 0.0 665
MS.gene50187.t1 MTR_3g028720 68.172 465 139 1 1 465 58 513 0.0 663
MS.gene50187.t1 MTR_4g066590 66.953 466 145 1 1 466 53 509 0.0 655
MS.gene50187.t1 MTR_4g066240 65.806 465 150 1 1 465 56 511 0.0 650
MS.gene50187.t1 MTR_4g066630 66.595 464 146 1 1 464 59 513 0.0 650
MS.gene50187.t1 MTR_6g078330 66.237 465 148 1 1 465 57 512 0.0 646
MS.gene50187.t1 MTR_4g066240 65.665 466 150 2 1 465 56 512 0.0 645
MS.gene50187.t1 MTR_6g078380 66.524 466 146 2 1 465 56 512 0.0 637
MS.gene50187.t1 MTR_4g066210 63.871 465 159 1 1 465 63 518 0.0 632
MS.gene50187.t1 MTR_4g066340 66.368 446 140 2 21 465 2 438 0.0 622
MS.gene50187.t1 MTR_4g066330 63.383 467 134 3 1 465 61 492 0.0 613
MS.gene50187.t1 MTR_4g066640 62.232 466 163 3 1 465 59 512 0.0 607
MS.gene50187.t1 MTR_4g066280 61.884 467 141 3 1 465 61 492 0.0 604
MS.gene50187.t1 MTR_6g078450 68.613 411 120 1 1 411 56 457 0.0 590
MS.gene50187.t1 MTR_3g026280 61.373 466 162 4 1 464 42 491 0.0 588
MS.gene50187.t1 MTR_3g028720 67.153 411 126 1 1 411 58 459 0.0 575
MS.gene50187.t1 MTR_6g078330 65.468 417 135 1 49 465 1 408 0.0 573
MS.gene50187.t1 MTR_4g023000 59.785 465 172 4 1 465 44 493 0.0 569
MS.gene50187.t1 MTR_4g066630 64.634 410 136 1 1 410 59 459 0.0 558
MS.gene50187.t1 MTR_6g078330 63.704 405 136 2 61 465 15 408 0.0 540
MS.gene50187.t1 MTR_3g028720 68.533 375 109 1 1 375 58 423 0.0 538
MS.gene50187.t1 MTR_4g066580 68.533 375 109 1 1 375 59 424 0.0 538
MS.gene50187.t1 MTR_4g066630 65.867 375 119 1 1 375 59 424 0.0 523
MS.gene50187.t1 MTR_4g066240 64.533 375 124 1 1 375 56 421 0.0 517
MS.gene50187.t1 MTR_4g015420 54.037 483 161 8 1 465 85 524 1.07e-180 516
MS.gene50187.t1 MTR_4g067040 66.391 363 113 1 1 363 54 407 2.23e-179 508
MS.gene50187.t1 MTR_2g043200 55.626 471 166 7 1 465 85 518 5.11e-176 504
MS.gene50187.t1 MTR_4g083000 53.518 469 200 6 1 465 48 502 2.16e-175 501
MS.gene50187.t1 MTR_3g026400 52.700 463 206 4 2 464 27 476 4.98e-174 497
MS.gene50187.t1 MTR_3g026400 52.700 463 206 4 2 464 58 507 8.69e-174 498
MS.gene50187.t1 MTR_3g026620 52.916 463 205 4 2 464 59 508 4.41e-173 496
MS.gene50187.t1 MTR_3g028720 68.935 338 96 1 1 338 58 386 3.91e-172 489
MS.gene50187.t1 MTR_4g067040 68.343 338 98 1 1 338 54 382 1.41e-171 488
MS.gene50187.t1 MTR_4g015460 53.361 476 174 10 1 465 62 500 5.18e-168 483
MS.gene50187.t1 MTR_5g044000 51.068 468 212 7 1 464 66 520 1.52e-164 474
MS.gene50187.t1 MTR_4g066630 66.265 332 103 1 1 332 59 381 9.48e-164 467
MS.gene50187.t1 MTR_6g078330 65.741 324 102 1 1 324 57 371 2.18e-158 454
MS.gene50187.t1 MTR_4g081530 48.932 468 224 5 1 465 44 499 7.42e-157 455
MS.gene50187.t1 MTR_0110s0040 49.244 463 219 6 2 464 64 510 2.95e-156 453
MS.gene50187.t1 MTR_4g066640 61.224 343 120 3 1 342 59 389 7.78e-155 445
MS.gene50187.t1 MTR_3g033810 48.608 467 212 8 2 465 42 483 1.74e-153 445
MS.gene50187.t1 MTR_4g083000 53.207 421 180 5 49 465 1 408 4.93e-153 441
MS.gene50187.t1 MTR_0110s0030 47.948 463 225 6 2 464 64 510 4.15e-152 442
MS.gene50187.t1 MTR_4g131810 46.467 467 236 5 1 464 48 503 1.29e-150 439
MS.gene50187.t1 MTR_3g033790 46.552 464 225 6 2 465 40 480 2.35e-147 430
MS.gene50187.t1 MTR_2g022760 47.447 470 225 6 1 464 56 509 1.21e-146 429
MS.gene50187.t1 MTR_2g079580 44.397 473 231 7 2 464 53 503 3.77e-138 407
MS.gene50187.t1 MTR_4g131800 46.681 467 234 7 1 465 536 989 5.09e-138 422
MS.gene50187.t1 MTR_2g079550 44.397 473 231 7 2 464 51 501 1.13e-137 406
MS.gene50187.t1 MTR_7g068910 45.610 467 229 7 1 465 51 494 4.76e-137 404
MS.gene50187.t1 MTR_2g022710 43.348 466 249 6 1 464 55 507 5.70e-136 402
MS.gene50187.t1 MTR_7g068910 44.654 477 229 8 1 465 51 504 5.92e-134 397
MS.gene50187.t1 MTR_7g033860 44.111 467 237 5 2 466 69 513 1.53e-133 395
MS.gene50187.t1 MTR_4g016920 43.737 471 228 8 2 464 48 489 6.65e-131 389
MS.gene50187.t1 MTR_5g068740 43.617 470 231 10 2 465 48 489 3.32e-128 382
MS.gene50187.t1 MTR_1g088610 44.304 474 225 10 2 467 48 490 3.66e-126 380
MS.gene50187.t1 MTR_1g088610 38.462 117 65 3 350 465 503 613 1.66e-15 79.3
MS.gene50187.t1 MTR_2g022760 46.445 422 204 6 49 464 1 406 1.56e-125 371
MS.gene50187.t1 MTR_0108s0030 40.860 465 237 4 2 466 24 450 4.82e-124 369
MS.gene50187.t1 MTR_3g026400 53.030 330 142 4 2 331 58 374 1.40e-120 357
MS.gene50187.t1 MTR_7g068900 43.735 423 217 5 44 465 17 419 7.44e-118 354
MS.gene50187.t1 MTR_2g022710 42.105 418 228 5 49 464 1 406 1.35e-117 351
MS.gene50187.t1 MTR_4g016920 43.160 424 205 7 49 464 1 396 2.25e-114 343
MS.gene50187.t1 MTR_2g022710 41.889 413 226 5 1 411 55 455 1.00e-112 340
MS.gene50187.t1 MTR_1g088630 40.685 467 224 9 2 465 16 432 1.65e-112 339
MS.gene50187.t1 MTR_2g022710 41.889 413 226 5 1 411 55 455 1.94e-112 340
MS.gene50187.t1 MTR_2g079580 45.312 384 179 6 2 375 53 415 2.25e-111 335
MS.gene50187.t1 MTR_7g051610 41.810 464 241 6 2 464 96 531 3.70e-111 338
MS.gene50187.t1 MTR_7g051510 41.595 464 242 7 2 464 96 531 4.31e-110 336
MS.gene50187.t1 MTR_7g051650 41.702 470 234 10 2 464 96 532 1.10e-109 335
MS.gene50187.t1 MTR_7g051650 41.542 467 235 10 2 464 96 528 4.01e-109 333
MS.gene50187.t1 MTR_2g022710 43.501 377 199 5 1 375 55 419 5.97e-108 327
MS.gene50187.t1 MTR_0110s0040 49.068 322 151 4 2 323 64 372 2.78e-106 322
MS.gene50187.t1 MTR_2g022710 43.014 365 194 5 1 363 55 407 3.28e-102 311
MS.gene50187.t1 MTR_7g056747 40.898 423 215 5 43 464 9 397 3.75e-99 303
MS.gene50187.t1 MTR_2g022710 46.129 310 155 4 1 310 55 352 1.21e-95 295
MS.gene50187.t1 MTR_4g016920 49.645 282 130 3 49 329 1 271 3.15e-91 280
MS.gene50187.t1 MTR_1g088630 44.377 329 143 6 2 328 48 338 6.15e-88 273
MS.gene50187.t1 MTR_1g088630 48.592 284 119 6 2 284 48 305 8.91e-83 258
MS.gene50187.t1 MTR_0110s0020 50.467 214 102 3 2 215 64 273 7.98e-71 227
MS.gene50187.t1 MTR_5g069350 63.218 174 23 5 304 467 48 190 6.05e-59 192
MS.gene50187.t1 MTR_4g122980 25.349 430 235 13 45 466 183 534 1.84e-28 119
MS.gene50187.t1 MTR_8g038650 45.055 91 50 0 221 311 62 152 6.21e-22 92.8
MS.gene50187.t1 MTR_4g061170 53.125 64 22 2 390 451 7 64 3.67e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50187.t1 AT5G44640 54.310 464 197 5 2 464 52 501 0.0 527
MS.gene50187.t1 AT5G42260 55.435 460 190 5 2 460 52 497 0.0 527
MS.gene50187.t1 AT2G44450 54.428 463 197 3 2 464 52 500 0.0 527
MS.gene50187.t1 AT2G44480 53.780 463 204 2 2 464 87 539 0.0 522
MS.gene50187.t1 AT2G44480 53.780 463 204 2 2 464 56 508 0.0 522
MS.gene50187.t1 AT3G60130 54.839 465 195 4 2 465 51 501 0.0 520
MS.gene50187.t1 AT5G24550 52.665 469 208 6 1 465 52 510 1.62e-179 513
MS.gene50187.t1 AT2G25630 51.940 464 191 5 2 464 51 483 1.69e-172 494
MS.gene50187.t1 AT3G60140 50.427 468 219 5 1 465 46 503 3.95e-172 496
MS.gene50187.t1 AT5G24540 53.305 469 205 6 1 465 52 510 1.76e-171 493
MS.gene50187.t1 AT1G51470 52.155 464 201 6 2 464 66 509 5.86e-167 480
MS.gene50187.t1 AT1G47600 51.820 467 198 7 2 464 66 509 1.45e-166 479
MS.gene50187.t1 AT1G26560 51.173 469 214 6 1 466 52 508 5.95e-166 478
MS.gene50187.t1 AT1G47600 51.392 467 199 7 2 464 66 508 1.29e-165 477
MS.gene50187.t1 AT5G54570 49.893 467 220 4 1 464 50 505 2.59e-164 474
MS.gene50187.t1 AT2G44470 48.712 466 226 5 2 464 50 505 5.04e-164 476
MS.gene50187.t1 AT3G60130 54.245 424 179 4 43 465 40 449 6.35e-163 468
MS.gene50187.t1 AT2G44480 52.885 416 186 2 49 464 1 406 1.80e-162 465
MS.gene50187.t1 AT2G44460 50.749 467 216 5 1 464 49 504 3.33e-160 466
MS.gene50187.t1 AT3G18080 49.247 465 219 7 2 465 60 508 3.37e-156 453
MS.gene50187.t1 AT3G60130 52.830 424 174 5 43 465 40 438 3.97e-155 448
MS.gene50187.t1 AT2G44490 45.957 470 239 5 1 465 34 493 3.89e-154 449
MS.gene50187.t1 AT3G60120 49.045 471 220 7 1 465 34 490 5.20e-154 448
MS.gene50187.t1 AT3G18070 48.069 466 215 9 2 465 51 491 7.23e-151 439
MS.gene50187.t1 AT3G03640 47.034 472 235 4 1 467 54 515 1.14e-150 439
MS.gene50187.t1 AT5G25980 48.373 461 222 7 9 465 75 523 1.44e-150 440
MS.gene50187.t1 AT3G18070 48.069 466 221 9 2 465 51 497 4.31e-150 437
MS.gene50187.t1 AT5G36890 47.957 465 220 5 2 465 37 480 2.50e-149 435
MS.gene50187.t1 AT5G36890 47.957 465 220 5 2 465 37 480 3.54e-149 434
MS.gene50187.t1 AT2G32860 46.581 468 238 4 2 466 115 573 4.23e-146 431
MS.gene50187.t1 AT2G32860 46.467 467 239 4 2 466 115 572 6.25e-146 431
MS.gene50187.t1 AT5G24540 51.816 413 186 5 1 410 52 454 1.18e-144 422
MS.gene50187.t1 AT3G09260 46.137 466 237 5 2 464 56 510 1.49e-142 419
MS.gene50187.t1 AT5G54570 49.165 419 199 4 49 464 1 408 2.09e-142 415
MS.gene50187.t1 AT1G61820 46.154 468 237 6 1 465 50 505 4.48e-142 417
MS.gene50187.t1 AT5G26000 47.732 463 221 9 9 464 63 511 5.96e-142 418
MS.gene50187.t1 AT5G54570 48.426 413 200 3 1 411 50 451 5.28e-140 409
MS.gene50187.t1 AT2G44470 47.202 411 205 4 2 410 50 450 2.45e-139 408
MS.gene50187.t1 AT2G44450 53.168 363 156 3 102 464 1 349 7.75e-139 403
MS.gene50187.t1 AT3G21370 45.435 471 238 7 2 465 54 512 1.54e-137 406
MS.gene50187.t1 AT1G75940 45.895 475 230 9 2 464 58 517 4.13e-137 405
MS.gene50187.t1 AT3G60140 49.867 377 177 4 1 375 46 412 3.68e-136 400
MS.gene50187.t1 AT1G52400 45.223 471 237 9 2 465 60 516 7.61e-136 402
MS.gene50187.t1 AT1G52400 45.223 471 237 9 2 465 60 516 7.61e-136 402
MS.gene50187.t1 AT4G27830 44.540 467 231 7 1 464 43 484 7.75e-136 401
MS.gene50187.t1 AT1G02850 44.850 466 229 7 2 465 47 486 2.14e-135 399
MS.gene50187.t1 AT1G02850 44.491 481 232 8 2 465 47 509 3.35e-135 400
MS.gene50187.t1 AT1G66280 46.253 467 234 6 2 464 57 510 6.61e-135 399
MS.gene50187.t1 AT1G61810 44.444 468 245 6 1 465 53 508 1.69e-134 398
MS.gene50187.t1 AT1G66270 46.039 467 235 6 2 464 57 510 1.91e-134 398
MS.gene50187.t1 AT1G02850 44.813 482 230 9 2 465 47 510 2.05e-134 398
MS.gene50187.t1 AT5G28510 44.280 472 242 7 2 464 60 519 2.80e-134 398
MS.gene50187.t1 AT5G25980 47.901 405 197 5 9 411 75 467 8.37e-132 389
MS.gene50187.t1 AT5G25980 47.901 405 197 5 9 411 75 467 8.37e-132 389
MS.gene50187.t1 AT1G66270 45.610 467 235 7 2 464 57 508 5.47e-131 389
MS.gene50187.t1 AT4G21760 43.590 468 240 8 1 464 74 521 7.88e-131 389
MS.gene50187.t1 AT1G61810 44.493 454 237 6 1 451 53 494 3.94e-129 385
MS.gene50187.t1 AT4G27820 43.469 467 234 7 1 464 43 482 6.52e-128 380
MS.gene50187.t1 AT4G21760 43.534 464 236 8 1 464 74 511 8.01e-128 381
MS.gene50187.t1 AT4G22100 43.710 469 233 10 1 465 42 483 5.83e-126 375
MS.gene50187.t1 AT1G60090 43.070 469 234 9 1 465 44 483 1.27e-124 372
MS.gene50187.t1 AT1G02850 42.704 466 212 7 2 465 47 459 5.00e-124 369
MS.gene50187.t1 AT5G26000 47.059 408 197 7 9 411 63 456 1.28e-122 365
MS.gene50187.t1 AT1G60090 42.017 476 236 9 1 465 44 490 6.66e-122 365
MS.gene50187.t1 AT1G45191 42.431 469 239 9 1 465 49 490 1.47e-121 365
MS.gene50187.t1 AT3G62750 41.791 469 230 8 1 464 43 473 4.22e-120 360
MS.gene50187.t1 AT3G62750 41.791 469 230 8 1 464 69 499 1.03e-119 360
MS.gene50187.t1 AT1G45191 42.644 469 243 8 1 465 49 495 1.08e-119 360
MS.gene50187.t1 AT1G45191 42.463 471 230 10 1 465 49 484 5.27e-119 358
MS.gene50187.t1 AT1G45191 42.171 479 243 9 1 465 49 507 2.77e-118 357
MS.gene50187.t1 AT4G27830 43.914 419 209 6 49 464 1 396 1.10e-117 352
MS.gene50187.t1 AT2G44480 57.292 288 113 2 2 289 87 364 2.50e-117 350
MS.gene50187.t1 AT2G44470 49.226 323 153 3 2 323 50 362 8.60e-117 348
MS.gene50187.t1 AT1G61810 44.048 420 220 6 49 465 1 408 1.99e-116 348
MS.gene50187.t1 AT2G44460 50.000 368 171 4 100 464 1 358 3.34e-115 346
MS.gene50187.t1 AT3G62740 40.385 468 243 9 1 464 43 478 1.10e-113 344
MS.gene50187.t1 AT1G02850 45.641 390 184 6 2 375 47 424 2.57e-112 338
MS.gene50187.t1 AT4G27820 42.482 419 216 6 49 464 1 397 9.09e-110 331
MS.gene50187.t1 AT4G27820 42.482 419 216 6 49 464 1 397 9.09e-110 331
MS.gene50187.t1 AT1G52400 43.855 415 213 8 2 410 60 460 1.03e-109 332
MS.gene50187.t1 AT5G48375 42.558 430 172 9 7 429 50 411 2.51e-108 328
MS.gene50187.t1 AT3G18070 48.512 336 157 6 132 465 99 420 6.22e-107 324
MS.gene50187.t1 AT1G61810 43.122 378 201 5 1 375 53 419 2.45e-104 317
MS.gene50187.t1 AT1G61820 44.385 374 194 5 95 465 4 366 7.25e-104 315
MS.gene50187.t1 AT3G62750 41.247 417 203 7 1 413 69 447 2.74e-103 316
MS.gene50187.t1 AT3G62750 40.618 421 212 7 49 464 1 388 2.95e-102 311
MS.gene50187.t1 AT3G62750 40.618 421 212 7 49 464 1 388 2.95e-102 311
MS.gene50187.t1 AT2G44480 48.208 307 149 2 158 464 6 302 3.44e-102 308
MS.gene50187.t1 AT3G18070 48.137 322 151 6 146 465 1 308 5.46e-101 305
MS.gene50187.t1 AT3G62740 40.678 413 210 8 1 410 43 423 7.13e-100 306
MS.gene50187.t1 AT1G51490 46.939 343 158 7 2 342 41 361 8.10e-100 305
MS.gene50187.t1 AT3G18070 47.619 315 149 6 2 316 51 349 4.77e-98 300
MS.gene50187.t1 AT1G45191 43.562 365 183 7 1 360 49 395 1.48e-96 297
MS.gene50187.t1 AT1G60270 47.742 310 146 4 1 310 44 337 4.98e-96 295
MS.gene50187.t1 AT1G45191 47.239 326 151 6 1 323 49 356 4.97e-95 293
MS.gene50187.t1 AT3G62750 45.659 311 144 4 1 311 43 328 8.62e-93 286
MS.gene50187.t1 AT3G62750 45.659 311 144 4 1 311 43 328 8.62e-93 286
MS.gene50187.t1 AT3G62750 45.659 311 144 4 1 311 69 354 1.01e-91 285
MS.gene50187.t1 AT1G61810 48.473 262 124 3 1 262 53 303 5.98e-83 258
MS.gene50187.t1 AT1G60270 48.092 262 124 3 49 310 1 250 3.37e-79 248
MS.gene50187.t1 AT3G18070 45.385 260 129 4 122 379 89 337 7.09e-73 234
MS.gene50187.t1 AT3G18070 45.763 236 115 4 146 379 1 225 3.08e-67 215
MS.gene50187.t1 AT5G16580 38.127 299 155 7 127 421 27 299 1.07e-53 182
MS.gene50187.t1 AT3G06510 24.476 429 242 14 44 466 159 511 2.90e-27 115
MS.gene50187.t1 AT3G06510 24.434 442 260 14 44 466 159 545 6.99e-27 114

Find 99 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTGCTTCAAGGAATT+TGG 0.175350 5.2:+60412339 MS.gene50187:CDS
GTGATTTATGTTACCGAAAA+TGG 0.182534 5.2:+60415944 MS.gene50187:CDS
GTTTGTTCTTCATAGAAATT+TGG 0.195177 5.2:-60415488 None:intergenic
TCGGATTTGCTATTTGAAAA+TGG 0.225126 5.2:-60415008 None:intergenic
GGTATAGTAGTGTTTAAATT+AGG 0.291027 5.2:-60415581 None:intergenic
GAATAGCGTTACAATCTTAC+TGG 0.295505 5.2:+60414979 MS.gene50187:CDS
CATATCTTCAATCAGCAATT+AGG 0.314453 5.2:+60416159 MS.gene50187:CDS
AACTGCACCGGTGGTGATTC+GGG 0.316225 5.2:+60412471 MS.gene50187:CDS
CAACTGCACCGGTGGTGATT+CGG 0.319150 5.2:+60412470 MS.gene50187:CDS
AGGATCGGCGTAAATGTAAA+AGG 0.343637 5.2:+60416277 MS.gene50187:intron
GTGGCAAAGGAACAAGTATA+TGG 0.352894 5.2:+60410686 MS.gene50187:CDS
AGGTGATGTGCAACTAAATA+TGG 0.357699 5.2:-60412501 None:intergenic
AGTTTACAAGACAAAATATC+AGG 0.358750 5.2:+60412551 MS.gene50187:CDS
TCTTTGTGACACTATTTCAT+TGG 0.365955 5.2:+60412011 MS.gene50187:CDS
GGCGTGTTTACTTGTAAGAT+TGG 0.385319 5.2:-60415627 None:intergenic
AACAGTTTCATAAATCCAAT+TGG 0.400089 5.2:-60415890 None:intergenic
CTTTGTGACACTATTTCATT+GGG 0.408201 5.2:+60412012 MS.gene50187:CDS
AAGCCAAACTACATCTCAAA+AGG 0.417236 5.2:+60414947 MS.gene50187:CDS
TGATGGAAGCTGAGCGTAAC+GGG 0.422414 5.2:+60415734 MS.gene50187:intron
GCCATTGGATGAAGCACTTA+AGG 0.423757 5.2:+60416100 MS.gene50187:CDS
CACCTGGTAGATGTTCTGAT+TGG 0.427255 5.2:+60412439 MS.gene50187:CDS
TTATGCGGAGCTTTGCTTCA+AGG 0.431389 5.2:+60412332 MS.gene50187:CDS
CAAGCCTTGGAAGATGAGTA+TGG 0.432317 5.2:+60412043 MS.gene50187:CDS
ATCTGCAGGCTGCTTCAGAT+TGG 0.449425 5.2:+60415855 MS.gene50187:intron
AGTGTTTAAATTAGGTGCAT+TGG 0.449618 5.2:-60415573 None:intergenic
GAAGGGTACACAGTGAGGTT+TGG 0.454487 5.2:+60416340 MS.gene50187:CDS
TTGGAGATAGAGTGAAGTAC+TGG 0.459700 5.2:+60412358 MS.gene50187:CDS
AAATGATCCAACACTGCCAT+TGG 0.467997 5.2:+60416085 MS.gene50187:CDS
TTGGGATCTACCACAAGCCT+TGG 0.469228 5.2:+60412030 MS.gene50187:CDS
TCGTTCTGCAGCTCTTTCAT+CGG 0.469821 5.2:-60415027 None:intergenic
ATCAACGAGCTAATAGCTAA+TGG 0.475339 5.2:+60411897 MS.gene50187:CDS
AAAAGAACCGTTGAGTAGCC+TGG 0.477296 5.2:-60415510 None:intergenic
TTTATGACACCATTGACAAC+GGG 0.481807 5.2:+60415422 MS.gene50187:CDS
CGAGCAATTGACTTCATGCT+TGG 0.483028 5.2:+60415047 MS.gene50187:CDS
AAACTACATCTCAAAAGGGT+TGG 0.501705 5.2:+60414952 MS.gene50187:CDS
CAATTGACTTCATGCTTGGA+TGG 0.502651 5.2:+60415051 MS.gene50187:CDS
AATTGGATTTATGAAACTGT+TGG 0.508886 5.2:+60415892 MS.gene50187:CDS
AATGGAGATGTCTCTATTGA+CGG 0.510615 5.2:+60411441 MS.gene50187:CDS
AAGCACTTAAGGACATTGAC+AGG 0.512346 5.2:+60416111 MS.gene50187:CDS
ACATCTCAAAAGGGTTGGAT+AGG 0.516519 5.2:+60414957 MS.gene50187:CDS
ACCTGGATATTTGTGAGTAA+AGG 0.518207 5.2:-60410713 None:intergenic
ATATCCACCTGTGCAGTAAG+TGG 0.518356 5.2:-60412400 None:intergenic
TCCACAGCATATGCGATCCT+TGG 0.521221 5.2:+60415451 MS.gene50187:CDS
CTCTGTCCCCGAATCACCAC+CGG 0.522685 5.2:-60412478 None:intergenic
GCTTCATCCAATGGCAGTGT+TGG 0.523292 5.2:-60416092 None:intergenic
GAAACTGTTGGTCTACATCA+AGG 0.528541 5.2:+60415904 MS.gene50187:CDS
AGCCAAACTACATCTCAAAA+GGG 0.528542 5.2:+60414948 MS.gene50187:CDS
CGGGATACCCATCGGTCCAC+AGG 0.528693 5.2:+60415753 MS.gene50187:CDS
TCCTTAAGTGCTTCATCCAA+TGG 0.530336 5.2:-60416101 None:intergenic
AAAATAATCGACAGAAGCAA+TGG 0.531000 5.2:+60411423 MS.gene50187:CDS
TGGCAAAGGAACAAGTATAT+GGG 0.535012 5.2:+60410687 MS.gene50187:CDS
ACCTTTACTCACAAATATCC+AGG 0.535242 5.2:+60410712 MS.gene50187:CDS
TGTACGTACCTGTGGACCGA+TGG 0.536172 5.2:-60415761 None:intergenic
AATCACCACCGGTGCAGTTG+AGG 0.538856 5.2:-60412467 None:intergenic
GGATAGTCTCCCGTTGTCAA+TGG 0.543914 5.2:-60415431 None:intergenic
TTTACTTGTAAGATTGGCAA+GGG 0.545503 5.2:-60415621 None:intergenic
CAGCTGCATGAGCAAGGAGT+AGG 0.545859 5.2:-60412521 None:intergenic
AGTGAAGGCATTAATCAAGA+AGG 0.546336 5.2:+60411852 MS.gene50187:CDS
TGCCAATCAGAACATCTACC+AGG 0.549985 5.2:-60412441 None:intergenic
ATGGAGATGTCTCTATTGAC+GGG 0.561237 5.2:+60411442 MS.gene50187:CDS
CATACAGATTATCCATCTCA+TGG 0.567022 5.2:+60411687 MS.gene50187:CDS
ACAGTACGAAGGTGCTGCAA+AGG 0.568443 5.2:+60410660 None:intergenic
CAAAACCTCAACTGCACCGG+TGG 0.571508 5.2:+60412462 MS.gene50187:CDS
GTGAAGGCATTAATCAAGAA+GGG 0.572932 5.2:+60411853 MS.gene50187:CDS
GTACGTACCTGTGGACCGAT+GGG 0.575340 5.2:-60415760 None:intergenic
GAGCCATCCACTTACTGCAC+AGG 0.576206 5.2:+60412393 MS.gene50187:CDS
GAACAGCAGCTGCATGAGCA+AGG 0.577925 5.2:-60412527 None:intergenic
CCATCCACTTACTGCACAGG+TGG 0.578054 5.2:+60412396 MS.gene50187:CDS
TGGCAAAACCTCAACTGCAC+CGG 0.578800 5.2:+60412459 MS.gene50187:CDS
AGGGAATCTGTGAGATAGCA+AGG 0.579096 5.2:-60415602 None:intergenic
CAGCATATGCGATCCTTGGT+TGG 0.580100 5.2:+60415455 MS.gene50187:CDS
CCACCTGTGCAGTAAGTGGA+TGG 0.584090 5.2:-60412396 None:intergenic
TCTCTATTGACGGGTATCAT+CGG 0.585792 5.2:+60411451 MS.gene50187:CDS
AAACTATATTCACAGATGGA+AGG 0.587869 5.2:+60411826 MS.gene50187:intron
ACTGCACCGGTGGTGATTCG+GGG 0.591295 5.2:+60412472 MS.gene50187:CDS
GTTTACTTGTAAGATTGGCA+AGG 0.591321 5.2:-60415622 None:intergenic
TACTCATCTTCCAAGGCTTG+TGG 0.591984 5.2:-60412040 None:intergenic
TACGAAGGTGCTGCAAAGGA+AGG 0.593383 5.2:+60410664 MS.gene50187:CDS
GCTGCAAAGGAAGGTGGCAA+AGG 0.596234 5.2:+60410673 MS.gene50187:CDS
ACCAAGGATCGCATATGCTG+TGG 0.604539 5.2:-60415452 None:intergenic
TGGCAATCGTTGTCCAACCA+AGG 0.606391 5.2:-60415468 None:intergenic
TGACGGGTATCATCGGTACA+AGG 0.609706 5.2:+60411458 MS.gene50187:CDS
GTTTATGACACCATTGACAA+CGG 0.621613 5.2:+60415421 MS.gene50187:CDS
GAGCGTAACGGGATACCCAT+CGG 0.623116 5.2:+60415745 MS.gene50187:CDS
ACCTCCATACTCATCTTCCA+AGG 0.624004 5.2:-60412047 None:intergenic
TAGTATTCTAGACCATGAGA+TGG 0.627823 5.2:-60411699 None:intergenic
GTGATGGAAGCTGAGCGTAA+CGG 0.637510 5.2:+60415733 MS.gene50187:intron
CTGATTGAAGATATGAGAGA+TGG 0.643010 5.2:-60416151 None:intergenic
ATCAAAAGCTCTCAGCACAA+TGG 0.644647 5.2:+60416401 MS.gene50187:CDS
GAAGGTGCTGCAAAGGAAGG+TGG 0.645017 5.2:+60410667 MS.gene50187:CDS
ACAGATGGAAGGATAAGTGA+AGG 0.645708 5.2:+60411837 MS.gene50187:intron
GAACAAACCAGGCTACTCAA+CGG 0.670966 5.2:+60415503 MS.gene50187:CDS
ATTTCTATGAAGAACAAACC+AGG 0.671675 5.2:+60415492 MS.gene50187:CDS
GGGGTGAAGGGTACACAGTG+AGG 0.672260 5.2:+60416335 MS.gene50187:CDS
GTTAATGCGATATTTCCACC+TGG 0.681081 5.2:+60412423 MS.gene50187:CDS
TTATAATAAATACAGTACGA+AGG 0.705773 5.2:+60410649 None:intergenic
ATCGTCGCTTACACTATGCG+AGG 0.707258 5.2:-60412079 None:intergenic
GCCTTGGAAGATGAGTATGG+AGG 0.722664 5.2:+60412046 MS.gene50187:CDS
CAATCAGAACATCTACCAGG+TGG 0.737629 5.2:-60412438 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAAGAAAAAACAAA+TGG + chr5.2:60415135-60415154 MS.gene50187:intron 10.0%
!!! AATGTGTTAATTATTTTTTT+AGG + chr5.2:60411107-60411126 MS.gene50187:intron 10.0%
!!! ACATTATTTATTTTGAATTA+AGG - chr5.2:60411092-60411111 None:intergenic 10.0%
!!! ATGTGTTAATTATTTTTTTA+GGG + chr5.2:60411108-60411127 MS.gene50187:intron 10.0%
!!! TAATACTTTCTATTTTATTT+TGG + chr5.2:60416237-60416256 MS.gene50187:intron 10.0%
!!! TAATTTTTTTTGATTAAATG+TGG - chr5.2:60411801-60411820 None:intergenic 10.0%
!!! TGTTTTAATTATTGTAATTT+CGG - chr5.2:60410905-60410924 None:intergenic 10.0%
!!! TTGTTTTATTTTTTTTTTGA+AGG - chr5.2:60411026-60411045 None:intergenic 10.0%
!! AAATTATGAATCATTGTTAA+TGG + chr5.2:60415200-60415219 MS.gene50187:intron 15.0%
!! AAGTTCATAATTTCATATAT+AGG - chr5.2:60415100-60415119 None:intergenic 15.0%
!! AATATCAGTTTAAAAATTGT+AGG + chr5.2:60412680-60412699 MS.gene50187:intron 15.0%
!! AGTTCATAATTTCATATATA+GGG - chr5.2:60415099-60415118 None:intergenic 15.0%
!! TTAATTTAAAAGCTTTCTAA+AGG - chr5.2:60410758-60410777 None:intergenic 15.0%
!! TTCAAAATACATATACTATA+AGG + chr5.2:60411328-60411347 MS.gene50187:intron 15.0%
!!! AAAAAGTTTATAGATGTTTT+TGG + chr5.2:60411045-60411064 MS.gene50187:intron 15.0%
!!! ATAGAAAATTTGTTTTATAC+AGG + chr5.2:60411628-60411647 MS.gene50187:intron 15.0%
!!! GTTTACTTTTTATTTGAAAA+GGG - chr5.2:60413585-60413604 None:intergenic 15.0%
!!! GTTTTAATTATTGTAATTTC+GGG - chr5.2:60410904-60410923 None:intergenic 15.0%
!!! TTATAGTATATGTATTTTGA+AGG - chr5.2:60411329-60411348 None:intergenic 15.0%
!! AATAAAACTATATTCACAGA+TGG + chr5.2:60411822-60411841 MS.gene50187:intron 20.0%
!! AATTCTTATTGCCATATATA+TGG + chr5.2:60414218-60414237 MS.gene50187:intron 20.0%
!! ATGATATAAGTGATGAATAA+AGG - chr5.2:60415651-60415670 None:intergenic 20.0%
!! CATAACTTACATTTAATCAA+TGG + chr5.2:60411384-60411403 MS.gene50187:intron 20.0%
!! GTAGATCAAAATAAAATCAA+TGG - chr5.2:60415265-60415284 None:intergenic 20.0%
!!! AACTTTTAGAAATGATTTTC+GGG + chr5.2:60412308-60412327 MS.gene50187:intron 20.0%
!!! GAACTTTTAGAAATGATTTT+CGG + chr5.2:60412307-60412326 MS.gene50187:intron 20.0%
!!! GGTTTACTTTTTATTTGAAA+AGG - chr5.2:60413586-60413605 None:intergenic 20.0%
!!! TCTCAAACAAATTTTACTTT+AGG + chr5.2:60411543-60411562 MS.gene50187:intron 20.0%
!!! TGAAAAATTATTAGTTTTGC+AGG + chr5.2:60411980-60411999 MS.gene50187:intron 20.0%
!!! TTGTTGTAATTTACCATTTT+CGG - chr5.2:60415960-60415979 None:intergenic 20.0%
! AAAATCAATGGAAGAAATAG+AGG - chr5.2:60415253-60415272 None:intergenic 25.0%
! AAATCAATGGAAGAAATAGA+GGG - chr5.2:60415252-60415271 None:intergenic 25.0%
! AACAGTTTCATAAATCCAAT+TGG - chr5.2:60415893-60415912 None:intergenic 25.0%
! AAGAACAATCTTCTTAGTAT+CGG - chr5.2:60414053-60414072 None:intergenic 25.0%
! AATTGGATTTATGAAACTGT+TGG + chr5.2:60415892-60415911 MS.gene50187:CDS 25.0%
! ACAGTTTATAAACAAATGGT+TGG - chr5.2:60412753-60412772 None:intergenic 25.0%
! AGTTTACAAGACAAAATATC+AGG + chr5.2:60412551-60412570 MS.gene50187:CDS 25.0%
! CAGTTTAAAAATTGTAGGTA+AGG + chr5.2:60412685-60412704 MS.gene50187:intron 25.0%
! GGTATAGTAGTGTTTAAATT+AGG - chr5.2:60415584-60415603 None:intergenic 25.0%
! GTCTTACAAATTTCAAATGA+TGG - chr5.2:60413290-60413309 None:intergenic 25.0%
! GTTTGTTCTTCATAGAAATT+TGG - chr5.2:60415491-60415510 None:intergenic 25.0%
! TAGGAAATTATCAACTTACT+TGG - chr5.2:60411725-60411744 None:intergenic 25.0%
! TGTCACAGTTTATAAACAAA+TGG - chr5.2:60412757-60412776 None:intergenic 25.0%
! TGTGTCTATATACATAAGTT+TGG - chr5.2:60412623-60412642 None:intergenic 25.0%
! TTATGAATCATTGTTAATGG+TGG + chr5.2:60415203-60415222 MS.gene50187:intron 25.0%
! TTTGTGAATATACAAAGGAT+CGG + chr5.2:60416262-60416281 MS.gene50187:intron 25.0%
!! ATGTAAAAGGATATTTTGCA+TGG + chr5.2:60416290-60416309 MS.gene50187:CDS 25.0%
!! TGGTTTTTGTGAATATACAA+AGG + chr5.2:60416257-60416276 MS.gene50187:intron 25.0%
!!! AACGGTTCTTTTGATTTTAT+CGG + chr5.2:60415521-60415540 MS.gene50187:CDS 25.0%
!!! AAGGTTTAATTCTAGTTTGA+AGG - chr5.2:60411073-60411092 None:intergenic 25.0%
!!! ATGAATATGTGAACTTGTTT+TGG + chr5.2:60416018-60416037 MS.gene50187:intron 25.0%
!!! CAAATGAAGTTTTATCTTTC+TGG + chr5.2:60415797-60415816 MS.gene50187:intron 25.0%
!!! CTAATTAGAAGTATCAAGAA+TGG - chr5.2:60414722-60414741 None:intergenic 25.0%
!!! TGGTTTTATAGTTATCCAAT+TGG + chr5.2:60415875-60415894 MS.gene50187:CDS 25.0%
AAAAGAGGGTTAAGATGAAA+AGG + chr5.2:60414756-60414775 MS.gene50187:intron 30.0%
AAAATAATCGACAGAAGCAA+TGG + chr5.2:60411423-60411442 MS.gene50187:CDS 30.0%
AAACTATATTCACAGATGGA+AGG + chr5.2:60411826-60411845 MS.gene50187:intron 30.0%
AAGCTCAAACTCCATTTAAA+GGG + chr5.2:60414601-60414620 MS.gene50187:intron 30.0%
AAGTCAAATCTTGCAGTTAT+GGG + chr5.2:60414456-60414475 MS.gene50187:intron 30.0%
AATAGATAGATAGAGATACC+TGG - chr5.2:60410733-60410752 None:intergenic 30.0%
AGAAGATTGTTCTTTAGATC+AGG + chr5.2:60414059-60414078 MS.gene50187:intron 30.0%
AGAGTTTAGTAATTGTGAGT+TGG - chr5.2:60413059-60413078 None:intergenic 30.0%
AGATAAAACTTCATTTGACG+TGG - chr5.2:60415794-60415813 None:intergenic 30.0%
AGCAGAAGTAGAAAAATACA+AGG - chr5.2:60413400-60413419 None:intergenic 30.0%
AGTGTTTAAATTAGGTGCAT+TGG - chr5.2:60415576-60415595 None:intergenic 30.0%
ATTTCTATGAAGAACAAACC+AGG + chr5.2:60415492-60415511 MS.gene50187:CDS 30.0%
CAATCATGCTTGAATACAAT+GGG - chr5.2:60413659-60413678 None:intergenic 30.0%
CATATCTTCAATCAGCAATT+AGG + chr5.2:60416159-60416178 MS.gene50187:CDS 30.0%
CTTTGTGACACTATTTCATT+GGG + chr5.2:60412012-60412031 MS.gene50187:CDS 30.0%
GAGTTTAGTAATTGTGAGTT+GGG - chr5.2:60413058-60413077 None:intergenic 30.0%
GTGATTTATGTTACCGAAAA+TGG + chr5.2:60415944-60415963 MS.gene50187:CDS 30.0%
TAAAACTCAGAGATCATTCT+AGG - chr5.2:60414162-60414181 None:intergenic 30.0%
TAAAGTTTCCCATCCAAAAA+GGG - chr5.2:60413982-60414001 None:intergenic 30.0%
TAACTGCATTGTTTAAGGAT+AGG - chr5.2:60411744-60411763 None:intergenic 30.0%
TATTGAAATGAAGGACACTT+TGG - chr5.2:60414278-60414297 None:intergenic 30.0%
TCAATTGAAATCTCAATTGC+AGG + chr5.2:60415399-60415418 MS.gene50187:intron 30.0%
TCTTTGTGACACTATTTCAT+TGG + chr5.2:60412011-60412030 MS.gene50187:CDS 30.0%
TGACTGTAGTAGAAAAATGT+AGG - chr5.2:60413607-60413626 None:intergenic 30.0%
TGAGATCTTAAACATTAGAC+TGG + chr5.2:60413929-60413948 MS.gene50187:intron 30.0%
TGTGGTTCATATTGAAATGA+AGG - chr5.2:60414287-60414306 None:intergenic 30.0%
TTCAATCAGCAATTAGGTAA+TGG + chr5.2:60416165-60416184 MS.gene50187:intron 30.0%
TTTACTTGTAAGATTGGCAA+GGG - chr5.2:60415624-60415643 None:intergenic 30.0%
! AAAGGGTATATACCTTTGAA+AGG - chr5.2:60413568-60413587 None:intergenic 30.0%
! AAGGGTATATACCTTTGAAA+GGG - chr5.2:60413567-60413586 None:intergenic 30.0%
! CTAGTATATCATTTTGTGCA+TGG + chr5.2:60412188-60412207 MS.gene50187:intron 30.0%
! CTTGATAACTGCATTGTTTA+AGG - chr5.2:60411749-60411768 None:intergenic 30.0%
! GTTTTATACAGGAAGATGTT+GGG + chr5.2:60411639-60411658 MS.gene50187:intron 30.0%
! TATTCCCTCAAACTTTTGTT+GGG + chr5.2:60411247-60411266 MS.gene50187:intron 30.0%
! TGAATTATCAATCCCCTTTT+TGG + chr5.2:60413966-60413985 MS.gene50187:intron 30.0%
! TGTTTTATACAGGAAGATGT+TGG + chr5.2:60411638-60411657 MS.gene50187:intron 30.0%
! TTACTTTAGGTTTCACTCAA+TGG + chr5.2:60411556-60411575 MS.gene50187:intron 30.0%
! TTCTAAATTTTACGCCACAA+TGG + chr5.2:60412250-60412269 MS.gene50187:intron 30.0%
! TTTTCGGTAACATAAATCAC+TGG - chr5.2:60415944-60415963 None:intergenic 30.0%
!! AAATGATTTTCGGGATTATG+CGG + chr5.2:60412317-60412336 MS.gene50187:CDS 30.0%
!! GAAATTTTTCAGCTCTCTTA+TGG - chr5.2:60415381-60415400 None:intergenic 30.0%
!! TCGGATTTGCTATTTGAAAA+TGG - chr5.2:60415011-60415030 None:intergenic 30.0%
!!! ACCTTTGAAAGGGTTTTATT+TGG - chr5.2:60413557-60413576 None:intergenic 30.0%
!!! AGCTCTCTTATTTTTTGTGA+TGG + chr5.2:60415717-60415736 MS.gene50187:intron 30.0%
!!! TCATCTTAACCCTCTTTTTT+CGG - chr5.2:60414754-60414773 None:intergenic 30.0%
AAAGTTTCCCATCCAAAAAG+GGG - chr5.2:60413981-60414000 None:intergenic 35.0%
AACACATAGAATCCTTTCCA+AGG - chr5.2:60413740-60413759 None:intergenic 35.0%
AAGGATATGTGGATTCAATG+AGG - chr5.2:60414673-60414692 None:intergenic 35.0%
AATGGAGATGTCTCTATTGA+CGG + chr5.2:60411441-60411460 MS.gene50187:CDS 35.0%
ACCTGGATATTTGTGAGTAA+AGG - chr5.2:60410716-60410735 None:intergenic 35.0%
ACCTTTACTCACAAATATCC+AGG + chr5.2:60410712-60410731 MS.gene50187:CDS 35.0%
AGAAAGAGACTTTGACATGA+CGG - chr5.2:60412964-60412983 None:intergenic 35.0%
AGATGAAAATACATGCAGAG+AGG - chr5.2:60414518-60414537 None:intergenic 35.0%
AGGCTTAGAAGGTTATAGTA+TGG - chr5.2:60413816-60413835 None:intergenic 35.0%
AGGTGATGTGCAACTAAATA+TGG - chr5.2:60412504-60412523 None:intergenic 35.0%
ATAAACAAATGGTTGGCACT+TGG - chr5.2:60412746-60412765 None:intergenic 35.0%
ATATACTCCCAAACAGAATC+GGG - chr5.2:60413489-60413508 None:intergenic 35.0%
ATCAACGAGCTAATAGCTAA+TGG + chr5.2:60411897-60411916 MS.gene50187:CDS 35.0%
ATGATCATATCAGCCTTAAG+AGG - chr5.2:60413845-60413864 None:intergenic 35.0%
ATTACCCCAACAAAAGTTTG+AGG - chr5.2:60411255-60411274 None:intergenic 35.0%
CAAGCTCAAACTCCATTTAA+AGG + chr5.2:60414600-60414619 MS.gene50187:intron 35.0%
CAAGTCAAATCTTGCAGTTA+TGG + chr5.2:60414455-60414474 MS.gene50187:intron 35.0%
CACATGTATCATTAGCAAAG+TGG + chr5.2:60411488-60411507 MS.gene50187:intron 35.0%
CATACAGATTATCCATCTCA+TGG + chr5.2:60411687-60411706 MS.gene50187:CDS 35.0%
CATATACTCCCAAACAGAAT+CGG - chr5.2:60413490-60413509 None:intergenic 35.0%
CCAATCATGCTTGAATACAA+TGG - chr5.2:60413660-60413679 None:intergenic 35.0%
CCATGATTGTATATATCTGC+AGG + chr5.2:60415841-60415860 MS.gene50187:intron 35.0%
CCATTGTATTCAAGCATGAT+TGG + chr5.2:60413657-60413676 MS.gene50187:intron 35.0%
CCTGCAGATATATACAATCA+TGG - chr5.2:60415844-60415863 None:intergenic 35.0%
CCTTTGTCCTATACTGAAAA+TGG + chr5.2:60414423-60414442 MS.gene50187:intron 35.0%
CTGATTGAAGATATGAGAGA+TGG - chr5.2:60416154-60416173 None:intergenic 35.0%
CTTCTTTGACATATCTGCTA+AGG + chr5.2:60412871-60412890 MS.gene50187:intron 35.0%
GAATAGCGTTACAATCTTAC+TGG + chr5.2:60414979-60414998 MS.gene50187:CDS 35.0%
GAGAGGAATCAAAGGAAAAT+TGG - chr5.2:60413459-60413478 None:intergenic 35.0%
GAGATTGTATAGAATGCAGT+AGG - chr5.2:60412909-60412928 None:intergenic 35.0%
GATCATATATGCAATGCCAA+GGG + chr5.2:60413859-60413878 MS.gene50187:intron 35.0%
GATGAAAATACATGCAGAGA+GGG - chr5.2:60414517-60414536 None:intergenic 35.0%
GCAGATATATACAATCATGG+AGG - chr5.2:60415841-60415860 None:intergenic 35.0%
GCCAAATAAAACCCTTTCAA+AGG + chr5.2:60413553-60413572 MS.gene50187:intron 35.0%
GCTTAGAAGGTTATAGTATG+GGG - chr5.2:60413814-60413833 None:intergenic 35.0%
GGCTTAGAAGGTTATAGTAT+GGG - chr5.2:60413815-60413834 None:intergenic 35.0%
GGGAATATGAAGATATGTGT+AGG - chr5.2:60414122-60414141 None:intergenic 35.0%
GTAAAGTTTCCCATCCAAAA+AGG - chr5.2:60413983-60414002 None:intergenic 35.0%
GTATTGAAGCAAATAGACAC+AGG - chr5.2:60416211-60416230 None:intergenic 35.0%
GTTTACTTGTAAGATTGGCA+AGG - chr5.2:60415625-60415644 None:intergenic 35.0%
GTTTATGACACCATTGACAA+CGG + chr5.2:60415421-60415440 MS.gene50187:CDS 35.0%
TAAGCCTACTTATCCTCTTA+AGG + chr5.2:60413829-60413848 MS.gene50187:intron 35.0%
TAAGGTCTACAAGCTAAGAA+AGG - chr5.2:60413164-60413183 None:intergenic 35.0%
TACACACATTGCTACAAAAC+AGG + chr5.2:60413893-60413912 MS.gene50187:intron 35.0%
TAGTATTCTAGACCATGAGA+TGG - chr5.2:60411702-60411721 None:intergenic 35.0%
TAGTGAAATGTTCAGAGTGT+CGG - chr5.2:60414185-60414204 None:intergenic 35.0%
TCAGTATAGGACAAAGGATA+TGG - chr5.2:60414420-60414439 None:intergenic 35.0%
TCAGTATGAGTTTCCTACTT+GGG - chr5.2:60414359-60414378 None:intergenic 35.0%
TCTTGATAAAGACACGACAA+AGG - chr5.2:60414692-60414711 None:intergenic 35.0%
TGATCATATATGCAATGCCA+AGG + chr5.2:60413858-60413877 MS.gene50187:intron 35.0%
TGCCATATATATGGTAGATG+CGG + chr5.2:60414227-60414246 MS.gene50187:intron 35.0%
TGGAAGAAATAGAGGGAAAA+AGG - chr5.2:60415245-60415264 None:intergenic 35.0%
TGGAATCAAGTGAGTCTTTA+AGG - chr5.2:60413439-60413458 None:intergenic 35.0%
TGGCAAAGGAACAAGTATAT+GGG + chr5.2:60410687-60410706 MS.gene50187:CDS 35.0%
TGTCGTGTCTTTATCAAGAA+TGG + chr5.2:60414693-60414712 MS.gene50187:intron 35.0%
TTAAATGGAGTTTGAGCTTG+CGG - chr5.2:60414600-60414619 None:intergenic 35.0%
TTACCCCAACAAAAGTTTGA+GGG - chr5.2:60411254-60411273 None:intergenic 35.0%
TTCAGTATGAGTTTCCTACT+TGG - chr5.2:60414360-60414379 None:intergenic 35.0%
TTTATGACACCATTGACAAC+GGG + chr5.2:60415422-60415441 MS.gene50187:CDS 35.0%
! AATGAAGGACACTTTGGAAA+AGG - chr5.2:60414272-60414291 None:intergenic 35.0%
! ACAATTTTGAATGGGGTGAA+GGG + chr5.2:60416323-60416342 MS.gene50187:CDS 35.0%
! AGAGGAAGAAATGTTGTTTG+TGG - chr5.2:60414305-60414324 None:intergenic 35.0%
! ATTCCCTCAAACTTTTGTTG+GGG + chr5.2:60411248-60411267 MS.gene50187:intron 35.0%
! CCATTTTCAGTATAGGACAA+AGG - chr5.2:60414426-60414445 None:intergenic 35.0%
! CTGTTGGACAATTTTGAATG+GGG + chr5.2:60416316-60416335 MS.gene50187:CDS 35.0%
! GCTGTTGGACAATTTTGAAT+GGG + chr5.2:60416315-60416334 MS.gene50187:CDS 35.0%
! GTATTCCCTCAAACTTTTGT+TGG + chr5.2:60411246-60411265 MS.gene50187:intron 35.0%
! TATCAATCCCCTTTTTGGAT+GGG + chr5.2:60413971-60413990 MS.gene50187:intron 35.0%
! TTATCAATCCCCTTTTTGGA+TGG + chr5.2:60413970-60413989 MS.gene50187:intron 35.0%
! TTTTTAACATCGTGATGTGG+TGG - chr5.2:60413239-60413258 None:intergenic 35.0%
!! AGTGAAGGCATTAATCAAGA+AGG + chr5.2:60411852-60411871 MS.gene50187:CDS 35.0%
!! CATGAATGAACTTGATTTGC+AGG + chr5.2:60416050-60416069 MS.gene50187:intron 35.0%
!! CATTCTAGGATGATGGTTAA+GGG - chr5.2:60414148-60414167 None:intergenic 35.0%
!! GCTAAAAGTGTCACATGTTA+GGG - chr5.2:60414387-60414406 None:intergenic 35.0%
!! GTGAAGGCATTAATCAAGAA+GGG + chr5.2:60411853-60411872 MS.gene50187:CDS 35.0%
!! TCATTCTAGGATGATGGTTA+AGG - chr5.2:60414149-60414168 None:intergenic 35.0%
!! TGCTAAAAGTGTCACATGTT+AGG - chr5.2:60414388-60414407 None:intergenic 35.0%
!! TGCTTTTTAACATCGTGATG+TGG - chr5.2:60413242-60413261 None:intergenic 35.0%
!! TTCCTCTAGATTTTGAAAGC+AGG + chr5.2:60413105-60413124 MS.gene50187:intron 35.0%
!!! ATTTTTTTGTAGCGCCATTG+TGG - chr5.2:60412267-60412286 None:intergenic 35.0%
!!! GTTTGGCTTTTAAGCAACAA+TGG - chr5.2:60414936-60414955 None:intergenic 35.0%
AAAGCTGGATGATGCATCAA+AGG - chr5.2:60413785-60413804 None:intergenic 40.0%
AAATGATCCAACACTGCCAT+TGG + chr5.2:60416085-60416104 MS.gene50187:CDS 40.0%
AAGACACGACAAAGGATATG+TGG - chr5.2:60414684-60414703 None:intergenic 40.0%
AAGCACTTAAGGACATTGAC+AGG + chr5.2:60416111-60416130 MS.gene50187:CDS 40.0%
AAGGCATGGAGAAGAAGATA+AGG - chr5.2:60413182-60413201 None:intergenic 40.0%
ACACATTGCTACAAAACAGG+TGG + chr5.2:60413896-60413915 MS.gene50187:intron 40.0%
ACAGATGGAAGGATAAGTGA+AGG + chr5.2:60411837-60411856 MS.gene50187:intron 40.0%
AGAGGATAAGTAGGCTTAGA+AGG - chr5.2:60413827-60413846 None:intergenic 40.0%
AGCAGCCACAAGGATATAAA+AGG - chr5.2:60413201-60413220 None:intergenic 40.0%
AGGATCGGCGTAAATGTAAA+AGG + chr5.2:60416277-60416296 MS.gene50187:intron 40.0%
AGTATATGCTGCATCAGATG+AGG + chr5.2:60413502-60413521 MS.gene50187:intron 40.0%
ATCAAAAGCTCTCAGCACAA+TGG + chr5.2:60416401-60416420 MS.gene50187:CDS 40.0%
ATGGAGATGTCTCTATTGAC+GGG + chr5.2:60411442-60411461 MS.gene50187:CDS 40.0%
ATTATGAGTCCAATTGTCCG+AGG - chr5.2:60412817-60412836 None:intergenic 40.0%
CACCTTCATCCGAAAAAAGA+GGG + chr5.2:60414742-60414761 MS.gene50187:intron 40.0%
CATAGAATCCTTTCCAAGGA+AGG - chr5.2:60413736-60413755 None:intergenic 40.0%
CCACAAGGATATAAAAGGCA+TGG - chr5.2:60413196-60413215 None:intergenic 40.0%
GAGCTTTGCTTCAAGGAATT+TGG + chr5.2:60412339-60412358 MS.gene50187:CDS 40.0%
GGCGTGTTTACTTGTAAGAT+TGG - chr5.2:60415630-60415649 None:intergenic 40.0%
GTAATCAACACCAAGTTGCT+GGG + chr5.2:60413350-60413369 MS.gene50187:intron 40.0%
GTAGATGACTTGATATTCGC+AGG - chr5.2:60413027-60413046 None:intergenic 40.0%
GTCCTGCTTTCAAAATCTAG+AGG - chr5.2:60413110-60413129 None:intergenic 40.0%
GTGAGAGTCTAAATTACTGC+AGG + chr5.2:60414908-60414927 MS.gene50187:intron 40.0%
GTGGCAAAGGAACAAGTATA+TGG + chr5.2:60410686-60410705 MS.gene50187:CDS 40.0%
GTTAATGCGATATTTCCACC+TGG + chr5.2:60412423-60412442 MS.gene50187:CDS 40.0%
TAGATGCGGCATGAATCAAA+AGG + chr5.2:60414241-60414260 MS.gene50187:intron 40.0%
TCAGCCTTAAGAGGATAAGT+AGG - chr5.2:60413836-60413855 None:intergenic 40.0%
TCCTTAAAAGTCTGTACCCT+CGG + chr5.2:60412797-60412816 MS.gene50187:intron 40.0%
TCCTTAAGTGCTTCATCCAA+TGG - chr5.2:60416104-60416123 None:intergenic 40.0%
TCTATACAATCTCAACACCC+TGG + chr5.2:60412916-60412935 MS.gene50187:intron 40.0%
TGCCGCATCTACCATATATA+TGG - chr5.2:60414232-60414251 None:intergenic 40.0%
TGCTTGTCAAGACTGATGAA+AGG - chr5.2:60413083-60413102 None:intergenic 40.0%
TGTAATCAACACCAAGTTGC+TGG + chr5.2:60413349-60413368 MS.gene50187:intron 40.0%
TTATGAGTCCAATTGTCCGA+GGG - chr5.2:60412816-60412835 None:intergenic 40.0%
TTGATCCACGCTAACATATG+TGG - chr5.2:60413684-60413703 None:intergenic 40.0%
TTGGAGATAGAGTGAAGTAC+TGG + chr5.2:60412358-60412377 MS.gene50187:CDS 40.0%
TTGGATGGGAAACTTTACAC+TGG + chr5.2:60413985-60414004 MS.gene50187:intron 40.0%
TTTGCTTTCTCATCCCAAGT+AGG + chr5.2:60414343-60414362 MS.gene50187:intron 40.0%
! AGGACACTTTGGAAAAGGTA+TGG - chr5.2:60414267-60414286 None:intergenic 40.0%
! AGGATGATGGTTAAGGGAAA+GGG - chr5.2:60414142-60414161 None:intergenic 40.0%
! ATATTTTGCATGGTCGCTGT+TGG + chr5.2:60416300-60416319 MS.gene50187:CDS 40.0%
! ATCATTGTTAATGGTGGTGC+AGG + chr5.2:60415209-60415228 MS.gene50187:intron 40.0%
! CAATTGACTTCATGCTTGGA+TGG + chr5.2:60415051-60415070 MS.gene50187:CDS 40.0%
! CCATGCCTTTTATATCCTTG+TGG + chr5.2:60413193-60413212 MS.gene50187:intron 40.0%
! CGCTGTTGGACAATTTTGAA+TGG + chr5.2:60416314-60416333 MS.gene50187:CDS 40.0%
! GAAACTGTTGGTCTACATCA+AGG + chr5.2:60415904-60415923 MS.gene50187:CDS 40.0%
! GAAGTATCAAGGATCTACCA+AGG - chr5.2:60414648-60414667 None:intergenic 40.0%
! GACAATTTTGAATGGGGTGA+AGG + chr5.2:60416322-60416341 MS.gene50187:CDS 40.0%
! GTCTGCTCCATTTTCAGTAT+AGG - chr5.2:60414433-60414452 None:intergenic 40.0%
! TAGGATGATGGTTAAGGGAA+AGG - chr5.2:60414143-60414162 None:intergenic 40.0%
! TCTCTATTGACGGGTATCAT+CGG + chr5.2:60411451-60411470 MS.gene50187:CDS 40.0%
!! AGGGTACAGACTTTTAAGGA+CGG - chr5.2:60412797-60412816 None:intergenic 40.0%
!! CAGAGATCATTCTAGGATGA+TGG - chr5.2:60414155-60414174 None:intergenic 40.0%
!! TCAATGAGGCAGAAGTATCA+AGG - chr5.2:60414659-60414678 None:intergenic 40.0%
!!! AACCCTCTTTTTTCGGATGA+AGG - chr5.2:60414747-60414766 None:intergenic 40.0%
AAAAGAACCGTTGAGTAGCC+TGG - chr5.2:60415513-60415532 None:intergenic 45.0%
AAAGAAGTCTGCGAGAGATG+TGG - chr5.2:60412858-60412877 None:intergenic 45.0%
AAGGCTCGTCTATCAGCAAA+GGG - chr5.2:60413381-60413400 None:intergenic 45.0%
ACCTCCATACTCATCTTCCA+AGG - chr5.2:60412050-60412069 None:intergenic 45.0%
AGGGAATCTGTGAGATAGCA+AGG - chr5.2:60415605-60415624 None:intergenic 45.0%
AGTATGGGGTTTGTCAAAGC+TGG - chr5.2:60413800-60413819 None:intergenic 45.0%
ATATCCACCTGTGCAGTAAG+TGG - chr5.2:60412403-60412422 None:intergenic 45.0%
ATCTTGCAGTTATGGGTCTG+AGG + chr5.2:60414463-60414482 MS.gene50187:intron 45.0%
CAAGCCTTGGAAGATGAGTA+TGG + chr5.2:60412043-60412062 MS.gene50187:CDS 45.0%
CAATCAGAACATCTACCAGG+TGG - chr5.2:60412441-60412460 None:intergenic 45.0%
CACCTGGTAGATGTTCTGAT+TGG + chr5.2:60412439-60412458 MS.gene50187:CDS 45.0%
CCTGACTGTTGTCTTTCAAC+CGG - chr5.2:60414012-60414031 None:intergenic 45.0%
CTATGCAGAGTTTGACGAAG+AGG - chr5.2:60414323-60414342 None:intergenic 45.0%
GAACAAACCAGGCTACTCAA+CGG + chr5.2:60415503-60415522 MS.gene50187:CDS 45.0%
GAGTGTATAGCAGTGTAGCT+AGG + chr5.2:60412222-60412241 MS.gene50187:intron 45.0%
GCACCTTCATCCGAAAAAAG+AGG + chr5.2:60414741-60414760 MS.gene50187:intron 45.0%
GCAGCTACAAGCCCTTTAAA+TGG - chr5.2:60414615-60414634 None:intergenic 45.0%
GCTGCTAGATGAGATACACA+TGG - chr5.2:60413312-60413331 None:intergenic 45.0%
GTGTAGGCAGCGTTATTCAA+GGG - chr5.2:60414106-60414125 None:intergenic 45.0%
GTGTATCTCATCTAGCAGCA+GGG + chr5.2:60413313-60413332 MS.gene50187:intron 45.0%
TACAATCTCAACACCCTGGT+AGG + chr5.2:60412920-60412939 MS.gene50187:intron 45.0%
TACTCATCTTCCAAGGCTTG+TGG - chr5.2:60412043-60412062 None:intergenic 45.0%
TCAGGTTCTTCTCTTGCAAC+TGG + chr5.2:60414027-60414046 MS.gene50187:intron 45.0%
TCGTTCTGCAGCTCTTTCAT+CGG - chr5.2:60415030-60415049 None:intergenic 45.0%
TGCCAATCAGAACATCTACC+AGG - chr5.2:60412444-60412463 None:intergenic 45.0%
TGGGAAACTTTACACTGGTC+CGG + chr5.2:60413990-60414009 MS.gene50187:intron 45.0%
TGTAGGCAGCGTTATTCAAG+GGG - chr5.2:60414105-60414124 None:intergenic 45.0%
TGTGTAGGCAGCGTTATTCA+AGG - chr5.2:60414107-60414126 None:intergenic 45.0%
TGTGTATCTCATCTAGCAGC+AGG + chr5.2:60413312-60413331 MS.gene50187:intron 45.0%
TTATGCGGAGCTTTGCTTCA+AGG + chr5.2:60412332-60412351 MS.gene50187:CDS 45.0%
TTGGTCCACATATGTTAGCG+TGG + chr5.2:60413676-60413695 MS.gene50187:intron 45.0%
! CGAGCAATTGACTTCATGCT+TGG + chr5.2:60415047-60415066 MS.gene50187:CDS 45.0%
! GCCATTGGATGAAGCACTTA+AGG + chr5.2:60416100-60416119 MS.gene50187:CDS 45.0%
!! AGACTTTGACATGACGGACT+TGG - chr5.2:60412958-60412977 None:intergenic 45.0%
!! GACTTTGACATGACGGACTT+GGG - chr5.2:60412957-60412976 None:intergenic 45.0%
!! GACTTTTAAGGACGGAAGTG+CGG - chr5.2:60412789-60412808 None:intergenic 45.0%
!! TCCGAGGGTACAGACTTTTA+AGG - chr5.2:60412801-60412820 None:intergenic 45.0%
!! ATTATTTATATTATTCATAT+GGG - chr5.2:60410849-60410868 None:intergenic 5.0%
!! TATTATTTATATTATTCATA+TGG - chr5.2:60410850-60410869 None:intergenic 5.0%
AAGGGATACTCCCAGCAACT+TGG - chr5.2:60413363-60413382 None:intergenic 50.0%
AATGGTTGGCACTTGGCACT+TGG - chr5.2:60412739-60412758 None:intergenic 50.0%
ACCAAGGATCGCATATGCTG+TGG - chr5.2:60415455-60415474 None:intergenic 50.0%
AGCTGCACCCGATTCTGTTT+GGG + chr5.2:60413479-60413498 MS.gene50187:intron 50.0%
AGTCTGCGAGAGATGTGGAA+TGG - chr5.2:60412853-60412872 None:intergenic 50.0%
AGTCTGTACCCTCGGACAAT+TGG + chr5.2:60412805-60412824 MS.gene50187:intron 50.0%
ATCGTCGCTTACACTATGCG+AGG - chr5.2:60412082-60412101 None:intergenic 50.0%
ATCTGCAGGCTGCTTCAGAT+TGG + chr5.2:60415855-60415874 MS.gene50187:intron 50.0%
ATTTGGCGTTTGCGCAGTGA+CGG - chr5.2:60413540-60413559 None:intergenic 50.0%
CAAGGCTCGTCTATCAGCAA+AGG - chr5.2:60413382-60413401 None:intergenic 50.0%
CAGCATATGCGATCCTTGGT+TGG + chr5.2:60415455-60415474 MS.gene50187:CDS 50.0%
CCATGAAGCCTTCCTTGGAA+AGG + chr5.2:60413725-60413744 MS.gene50187:intron 50.0%
CCGGTTGAAAGACAACAGTC+AGG + chr5.2:60414009-60414028 MS.gene50187:intron 50.0%
CCTTTCCAAGGAAGGCTTCA+TGG - chr5.2:60413728-60413747 None:intergenic 50.0%
GACTTTGTTGAGCAGCCACA+AGG - chr5.2:60413211-60413230 None:intergenic 50.0%
GCCTTGGAAGATGAGTATGG+AGG + chr5.2:60412046-60412065 MS.gene50187:CDS 50.0%
GCTTCATCCAATGGCAGTGT+TGG - chr5.2:60416095-60416114 None:intergenic 50.0%
GGATAGTCTCCCGTTGTCAA+TGG - chr5.2:60415434-60415453 None:intergenic 50.0%
GTCACACTTGTACGTACCTG+TGG - chr5.2:60415772-60415791 None:intergenic 50.0%
GTGCAGCTGAGAGGAATCAA+AGG - chr5.2:60413467-60413486 None:intergenic 50.0%
GTTCTCCATGAAGCCTTCCT+TGG + chr5.2:60413720-60413739 MS.gene50187:intron 50.0%
TACGACGCGCTTGGTACAAA+AGG - chr5.2:60413138-60413157 None:intergenic 50.0%
TAGCTGCGCTTGTTTCACCT+TGG + chr5.2:60414628-60414647 MS.gene50187:intron 50.0%
TCCACAGCATATGCGATCCT+TGG + chr5.2:60415451-60415470 MS.gene50187:CDS 50.0%
TGATGGAAGCTGAGCGTAAC+GGG + chr5.2:60415734-60415753 MS.gene50187:intron 50.0%
TGGCAAAACCTCAACTGCAC+CGG + chr5.2:60412459-60412478 MS.gene50187:CDS 50.0%
TGGCAATCGTTGTCCAACCA+AGG - chr5.2:60415471-60415490 None:intergenic 50.0%
TTGGGATCTACCACAAGCCT+TGG + chr5.2:60412030-60412049 MS.gene50187:CDS 50.0%
! GAAGGGTACACAGTGAGGTT+TGG + chr5.2:60416340-60416359 MS.gene50187:CDS 50.0%
! GTGATGGAAGCTGAGCGTAA+CGG + chr5.2:60415733-60415752 MS.gene50187:intron 50.0%
! TATGCAATGCCAAGGGTGTG+TGG + chr5.2:60413866-60413885 MS.gene50187:intron 50.0%
! TGACGGGTATCATCGGTACA+AGG + chr5.2:60411458-60411477 MS.gene50187:CDS 50.0%
!! TACGAAGGTGCTGCAAAGGA+AGG + chr5.2:60410664-60410683 MS.gene50187:CDS 50.0%
!! TTTTAAGGACGGAAGTGCGG+AGG - chr5.2:60412786-60412805 None:intergenic 50.0%
AATCACCACCGGTGCAGTTG+AGG - chr5.2:60412470-60412489 None:intergenic 55.0%
AGTTTGAGCTTGCGGCACGA+AGG - chr5.2:60414592-60414611 None:intergenic 55.0%
CAAAACCTCAACTGCACCGG+TGG + chr5.2:60412462-60412481 MS.gene50187:CDS 55.0%
CAGCTGCACCCGATTCTGTT+TGG + chr5.2:60413478-60413497 MS.gene50187:intron 55.0%
CAGCTGCATGAGCAAGGAGT+AGG - chr5.2:60412524-60412543 None:intergenic 55.0%
CCACCTGTGCAGTAAGTGGA+TGG - chr5.2:60412399-60412418 None:intergenic 55.0%
CCATCCACTTACTGCACAGG+TGG + chr5.2:60412396-60412415 MS.gene50187:CDS 55.0%
GAAAGGTCTTACGACGCGCT+TGG - chr5.2:60413147-60413166 None:intergenic 55.0%
GAACAGCAGCTGCATGAGCA+AGG - chr5.2:60412530-60412549 None:intergenic 55.0%
GAGCCATCCACTTACTGCAC+AGG + chr5.2:60412393-60412412 MS.gene50187:CDS 55.0%
GCTGCAAAGGAAGGTGGCAA+AGG + chr5.2:60410673-60410692 MS.gene50187:CDS 55.0%
GGCAGAATCAGCTCCTACCA+GGG - chr5.2:60412936-60412955 None:intergenic 55.0%
GTACGTACCTGTGGACCGAT+GGG - chr5.2:60415763-60415782 None:intergenic 55.0%
GTGTAGAAGCCACACACCCT+TGG - chr5.2:60413878-60413897 None:intergenic 55.0%
TGTACGTACCTGTGGACCGA+TGG - chr5.2:60415764-60415783 None:intergenic 55.0%
TTTGGCGTTTGCGCAGTGAC+GGG - chr5.2:60413539-60413558 None:intergenic 55.0%
! AACTGCACCGGTGGTGATTC+GGG + chr5.2:60412471-60412490 MS.gene50187:CDS 55.0%
! CAACTGCACCGGTGGTGATT+CGG + chr5.2:60412470-60412489 MS.gene50187:CDS 55.0%
! GAGCGTAACGGGATACCCAT+CGG + chr5.2:60415745-60415764 MS.gene50187:CDS 55.0%
!! GAAGGTGCTGCAAAGGAAGG+TGG + chr5.2:60410667-60410686 MS.gene50187:CDS 55.0%
CAGAATCGGGTGCAGCTGAG+AGG - chr5.2:60413476-60413495 None:intergenic 60.0%
CGGCACGAAGGAGGGAGAAA+CGG - chr5.2:60414580-60414599 None:intergenic 60.0%
CTCTGTCCCCGAATCACCAC+CGG - chr5.2:60412481-60412500 None:intergenic 60.0%
GGGCAGAATCAGCTCCTACC+AGG - chr5.2:60412937-60412956 None:intergenic 60.0%
TGAGCTTGCGGCACGAAGGA+GGG - chr5.2:60414588-60414607 None:intergenic 60.0%
TTGAGCTTGCGGCACGAAGG+AGG - chr5.2:60414589-60414608 None:intergenic 60.0%
! ACTGCACCGGTGGTGATTCG+GGG + chr5.2:60412472-60412491 MS.gene50187:CDS 60.0%
! GGGGTGAAGGGTACACAGTG+AGG + chr5.2:60416335-60416354 MS.gene50187:CDS 60.0%
CGGGATACCCATCGGTCCAC+AGG + chr5.2:60415753-60415772 MS.gene50187:CDS 65.0%
! GGCGTTTGCGCAGTGACGGG+TGG - chr5.2:60413536-60413555 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 60410664 60416450 60410664 ID=MS.gene50187
chr5.2 mRNA 60410664 60416450 60410664 ID=MS.gene50187.t1;Parent=MS.gene50187
chr5.2 exon 60410664 60410733 60410664 ID=MS.gene50187.t1.exon1;Parent=MS.gene50187.t1
chr5.2 CDS 60410664 60410733 60410664 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60411421 60411479 60411421 ID=MS.gene50187.t1.exon2;Parent=MS.gene50187.t1
chr5.2 CDS 60411421 60411479 60411421 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60411650 60411725 60411650 ID=MS.gene50187.t1.exon3;Parent=MS.gene50187.t1
chr5.2 CDS 60411650 60411725 60411650 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60411841 60411918 60411841 ID=MS.gene50187.t1.exon4;Parent=MS.gene50187.t1
chr5.2 CDS 60411841 60411918 60411841 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60412002 60412089 60412002 ID=MS.gene50187.t1.exon5;Parent=MS.gene50187.t1
chr5.2 CDS 60412002 60412089 60412002 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60412317 60412572 60412317 ID=MS.gene50187.t1.exon6;Parent=MS.gene50187.t1
chr5.2 CDS 60412317 60412572 60412317 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60414930 60415072 60414930 ID=MS.gene50187.t1.exon7;Parent=MS.gene50187.t1
chr5.2 CDS 60414930 60415072 60414930 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60415421 60415638 60415421 ID=MS.gene50187.t1.exon8;Parent=MS.gene50187.t1
chr5.2 CDS 60415421 60415638 60415421 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60415743 60415774 60415743 ID=MS.gene50187.t1.exon9;Parent=MS.gene50187.t1
chr5.2 CDS 60415743 60415774 60415743 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60415863 60415965 60415863 ID=MS.gene50187.t1.exon10;Parent=MS.gene50187.t1
chr5.2 CDS 60415863 60415965 60415863 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60416072 60416180 60416072 ID=MS.gene50187.t1.exon11;Parent=MS.gene50187.t1
chr5.2 CDS 60416072 60416180 60416072 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
chr5.2 exon 60416279 60416450 60416279 ID=MS.gene50187.t1.exon12;Parent=MS.gene50187.t1
chr5.2 CDS 60416279 60416450 60416279 ID=cds.MS.gene50187.t1;Parent=MS.gene50187.t1
Gene Sequence

>MS.gene50187

TACGAAGGTGCTGCAAAGGAAGGTGGCAAAGGAACAAGTATATGGGATACCTTTACTCACAAATATCCAGGTATCTCTATCTATCTATTTACCTTTAGAAAGCTTTTAAATTAATTATTTATTAAAATCTAGTTAATTTTTTATGAAATTAATTAAGCTTCATACAAAAGAAAAAACTATCTCCCATATGAATAATATAAATAATAATAATAGATATTTATACGTAGACTAAAGAAACCCGAAATTACAATAATTAAAACATAATTTATTCTGAAATATATATATATATATATATATATATATATATATATATATTATATAATGTTTAATTTATTTCTTTCATAAAACAAAAAAGTTTTCCTTCAAAAAAAAAATAAAACAAAAAAGTTTATAGATGTTTTTGGTTCCTTCAAACTAGAATTAAACCTTAATTCAAAATAAATAATGTGTTAATTATTTTTTTAGGGTAAATAATGTGTTAATTATTGTAATTTAGAGTTTCTTAAGAGTAAATATATTACAAGTACGTAAACGTAAAAAAATACATTATAAACTTTTTTGATCTTGTACTAGAATAAACTTGTATTCCCTCAAACTTTTGTTGGGGTAATTTATTTCTTAAGATCAAATAAACTAGTATATATTTAAGAGTGTAATTATATCCTTCAAAATACATATACTATAAGGATTAAAACAAAACAACTAGAATGTATGTAAATGCATAACTTACATTTAATCAATGGTGATCGATATACAGAAAAAATAATCGACAGAAGCAATGGAGATGTCTCTATTGACGGGTATCATCGGTACAAGGTATGATTCACATGTATCATTAGCAAAGTGGTTAAACTTAAACTTTCACTTAATGCAAAAATGTCTCAAACAAATTTTACTTTAGGTTTCACTCAATGGATTTTCTACTAAAATTCTTTAATATATCGATGTATTTTATTTTTATGTTATAGAAAATTTGTTTTATACAGGAAGATGTTGGGATCATGAAGTATATGAATTTAGATGCATACAGATTATCCATCTCATGGTCTAGAATACTACCAAGTAAGTTGATAATTTCCTATCCTTAAACAATGCAGTTATCAAGTAAATTATTGCAGTCTTAGTAAACTACATCCACATTTAATCAAAAAAAATTAAAATAAAACTATATTCACAGATGGAAGGATAAGTGAAGGCATTAATCAAGAAGGGCTCACATTCTACAACAACTTCATCAACGAGCTAATAGCTAATGGTCAGAAATATTAAAATATGCATTTTATAATTTCTTAAGCATAGTACATTGCAATCATAATTGAAAAATTATTAGTTTTGCAGGTATAGAAGTCTTTGTGACACTATTTCATTGGGATCTACCACAAGCCTTGGAAGATGAGTATGGAGGTTTCTTAAGTCCTCGCATAGTGTAAGCGACGATGTACTAACATTAAAACTATAATTTATTTAGAATTATATGAGTAAATTAAATTTTCTTCTAAGTTGAAGAATGCTTTAGATGTGAAACTAGTATATCATTTTGTGCATGGAGCAGTAAGAAGAGTGTATAGCAGTGTAGCTAGGTTTCATTCTAAATTTTACGCCACAATGGCGCTACAAAAAAATTGATAATACTTTTCTGTTTTGAACTTTTAGAAATGATTTTCGGGATTATGCGGAGCTTTGCTTCAAGGAATTTGGAGATAGAGTGAAGTACTGGATTACTATAAATGAGCCATCCACTTACTGCACAGGTGGATATGTTAATGCGATATTTCCACCTGGTAGATGTTCTGATTGGCAAAACCTCAACTGCACCGGTGGTGATTCGGGGACAGAGCCATATTTAGTTGCACATCACCTACTCCTTGCTCATGCAGCTGCTGTTCAAGTTTACAAGACAAAATATCAGGTTCATTTTAACTCTTAGTGATGATAACATTGAAGCTCTAAAATGTACCAAACTTATGTATATAGACACAAGTAATTAAAATTTGCATATGATATTAAAATAATTTCAATATCAGTTTAAAAATTGTAGGTAAGGTCGAATCGTTCAAGTAATACTTGTGCTGCCAAGTGCCAAGTGCCAACCATTTGTTTATAAACTGTGACATAATTTCCTCCGCACTTCCGTCCTTAAAAGTCTGTACCCTCGGACAATTGGACTCATAATTGAGTTTCTATTTCCATTCCACATCTCTCGCAGACTTCTTTGACATATCTGCTAAGGCTGATATATATTCCTACTGCATTCTATACAATCTCAACACCCTGGTAGGAGCTGATTCTGCCCAAGTCCGTCATGTCAAAGTCTCTTTCTGTAGTTTTTTTGAATTTTTTGAACATGTCTTTTATTGTTTCCTGCGAATATCAAGTCATCTACATGTTCTGCCCAACTCACAATTACTAAACTCTTCCTTTCATCAGTCTTGACAAGCAGTTTCCTCTAGATTTTGAAAGCAGGACATAATCCTTTTGTACCAAGCGCGTCGTAAGACCTTTCTTAGCTTGTAGACCTTATCTTCTTCTCCATGCCTTTTATATCCTTGTGGCTGCTCAACAAAGTCAGTTTCCACCACATCACGATGTTAAAAAGCACTTTCGCATCTAGTTGATAAACGCACCATCATTTGAAATTTGTAAGACCATGTGTATCTCATCTAGCAGCAGGGAAAAACATTTGACTGTAATCAACACCAAGTTGCTGGGAGTATCCCTTTGCTGATAGACGAGCCTTGTATTTTTCTACTTCTGCTCTCTAGTTGAACTTAGCCTTAAAGACTCACTTGATTCCAATTTTCCTTTGATTCCTCTCAGCTGCACCCGATTCTGTTTGGGAGTATATGCTGCATCAGATGAGGTGAATTTTCCACCCGTCACTGCGCAAACGCCAAATAAAACCCTTTCAAAGGTATATACCCTTTTCAAATAAAAAGTAAACCTACATTTTTCTACTACAGTCATCAATAAAAGTTATGAAATACATCTTGTTCCCATTGTATTCAAGCATGATTGGTCCACATATGTTAGCGTGGATCAACTTCAGAACTTGAGATGTTCTCCATGAAGCCTTCCTTGGAAAGGATTCTATGTGTTTCTATCTTGCAATCACTGCACACCTTTGATGCATCATCCAGCTTTGACAAACCCCATACTATAACCTTCTAAGCCTACTTATCCTCTTAAGGCTGATATGATCATATATGCAATGCCAAGGGTGTGTGGCTTCTACACACATTGCTACAAAACAGGTGGAAGATATGACTGAGATCTTAAACATTAGACTGGATGACATCTGAGATTGAATTATCAATCCCCTTTTTGGATGGGAAACTTTACACTGGTCCGGTTGAAAGACAACAGTCAGGTTCTTCTCTTGCAACTGGCCGATACTAAGAAGATTGTTCTTTAGATCAGGAATATAGTATACATCAGATACCCCTTGAATAACGCTGCCTACACATATCTTCATATTCCCTTTCCCTTAACCATCATCCTAGAATGATCTCTGAGTTTTACCGACACTCTGAACATTTCACTAAGACTGTGAAACTAATTCTTATTGCCATATATATGGTAGATGCGGCATGAATCAAAAGGCCATACCTTTTCCAAAGTGTCCTTCATTTCAATATGAACCACAAACAACATTTCTTCCTCTTCGTCAAACTCTGCATAGTTTGCTTTCTCATCCCAAGTAGGAAACTCATACTGAAAATGCCCTAACATGTGACACTTTTAGCATTCAACGAACCATATCCTTTGTCCTATACTGAAAATGGAGCAGACAACAAGTCAAATCTTGCAGTTATGGGTCTGAGGATCTTGTCAACAACTGTCATTTGTTCTACCCTCTCTGCATGTATTTTCATCTTATTGACAATGTCGAGAGTTCTTGCAATGTATACATCAACCGTTTCTCCCTCCTTCGTGCCGCAAGCTCAAACTCCATTTAAAGGGCTTGTAGCTGCGCTTGTTTCACCTTGGTAGATCCTTGATACTTCTGCCTCATTGAATCCACATATCCTTTGTCGTGTCTTTATCAAGAATGGTCTCCATTCTTGATACTTCTAATTAGCACCTTCATCCGAAAAAAGAGGGTTAAGATGAAAAGGTTTTTTGTAAAATAAAAAAAACAAAGATGCAAAAAGTCTTGTATCATGATCATCTTATATCTAAGCATTGTATTAGTTGTGTCTATAGACAAGTGCACATAAAAGTTTTATGTACTTGAATACTAATTTGTGAGAGTCTAAATTACTGCAGGTGCCATTGTTGCTTAAAAGCCAAACTACATCTCAAAAGGGTTGGATAGGAATAGCGTTACAATCTTACTGGTTTGTGCCATTTTCAAATAGCAAATCCGATGAAAGAGCTGCAGAACGAGCAATTGACTTCATGCTTGGATGGTTAGTAGCTCATTGCACACTCGCCCTATATATGAAATTATGAACTTAACATGACTTGATTATATAAAAAAGAAAAAACAAATGGAGCATGATTTACTAATGAATGTTCATTTTTTGTTCATCTCTCAAATTATGAATCATTGTTAATGGTGGTGCAGGTTAAATAAAGCCTTTTTCCCTCTATTTCTTCCATTGATTTTATTTTGATCTACATTGTTGAAGTATATCATTTATTTTTTACACACTATATGCATGATCATGAATCAATGATAAAAATACGTGTGTGTGCGCGCACGCGCATAGCACCATAAGAGAGCTGAAAAATTTCAATTGAAATCTCAATTGCAGGTTTATGACACCATTGACAACGGGAGACTATCCACAGCATATGCGATCCTTGGTTGGACAACGATTGCCAAATTTCTATGAAGAACAAACCAGGCTACTCAACGGTTCTTTTGATTTTATCGGATTAAACTACTACACATCTAGATATGCAGCCAATGCACCTAATTTAAACACTACTATACCTTGCTATCTCACAGATTCCCTTGCCAATCTTACAAGTAAACACGCCTTTATTCATCACTTATATCATAATTAATTTTAACTAATAATTTAAATCTATGTTGAATTTGACGATAAGCTCTCTTATTTTTTGTGATGGAAGCTGAGCGTAACGGGATACCCATCGGTCCACAGGTACGTACAAGTGTGACCACGTCAAATGAAGTTTTATCTTTCTGGTAAAATAAAAATATGAAACCTCCATGATTGTATATATCTGCAGGCTGCTTCAGATTGGTTTTATAGTTATCCAATTGGATTTATGAAACTGTTGGTCTACATCAAGGAAAAGTACAACAATCCAGTGATTTATGTTACCGAAAATGGTAAATTACAACAATCGTCGATAAATATTGCAACGTAAATATATGAATGAACATGAATATGTGAACTTGTTTTGGTACATCACACATGAATGAACTTGATTTGCAGGTATAGATGAGAAAAATGATCCAACACTGCCATTGGATGAAGCACTTAAGGACATTGACAGGATTAATTATTATCATGACCATCTCTCATATCTTCAATCAGCAATTAGGTAATGGTTGCTTTTATGTCTAAAAATCCTGTGTCTATTTGCTTCAATACACATCTTAATACTTTCTATTTTATTTTGGTTTTTGTGAATATACAAAGGATCGGCGTAAATGTAAAAGGATATTTTGCATGGTCGCTGTTGGACAATTTTGAATGGGGTGAAGGGTACACAGTGAGGTTTGGAATGAACTTTGTAGATTACAAAAATAACTTGAAAAGATATCAAAAGCTCTCAGCACAATGGTTCAAGAATTTTTTGAAGACACTCTAG
Protein sequence

>MS.gene50187.t1

YEGAAKEGGKGTSIWDTFTHKYPEKIIDRSNGDVSIDGYHRYKEDVGIMKYMNLDAYRLSISWSRILPNGRISEGINQEGLTFYNNFINELIANGIEVFVTLFHWDLPQALEDEYGGFLSPRIVNDFRDYAELCFKEFGDRVKYWITINEPSTYCTGGYVNAIFPPGRCSDWQNLNCTGGDSGTEPYLVAHHLLLAHAAAVQVYKTKYQVPLLLKSQTTSQKGWIGIALQSYWFVPFSNSKSDERAAERAIDFMLGWFMTPLTTGDYPQHMRSLVGQRLPNFYEEQTRLLNGSFDFIGLNYYTSRYAANAPNLNTTIPCYLTDSLANLTTERNGIPIGPQAASDWFYSYPIGFMKLLVYIKEKYNNPVIYVTENGIDEKNDPTLPLDEALKDIDRINYYHDHLSYLQSAIRIGVNVKGYFAWSLLDNFEWGEGYTVRFGMNFVDYKNNLKRYQKLSAQWFKNFLKTL