Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51054.t1 | XP_003608997.2 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 6.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51054.t1 | Q5GI04 | 87.4 | 285 | 36 | 0 | 1 | 285 | 1 | 285 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51054.t1 | G7JPW8 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 4.7e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058043 | MS.gene51054 | 0.974903 | 5.55E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51054 | MS.gene030984 | PPI |
| MS.gene51054 | MS.gene028857 | PPI |
| MS.gene51054 | MS.gene20481 | PPI |
| MS.gene31416 | MS.gene51054 | PPI |
| MS.gene51054 | MS.gene055768 | PPI |
| MS.gene043467 | MS.gene51054 | PPI |
| MS.gene51054 | MS.gene029948 | PPI |
| MS.gene51054 | MS.gene59292 | PPI |
| MS.gene51054 | MS.gene68929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51054.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene51054.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene51054.t1 | MTR_4g107760 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene51054.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 61 | 346 | 0.0 | 552 |
| MS.gene51054.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene51054.t1 | MTR_6g011380 | 83.688 | 282 | 46 | 0 | 1 | 282 | 1 | 282 | 7.37e-180 | 497 |
| MS.gene51054.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 2.90e-177 | 490 |
| MS.gene51054.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 3.22e-177 | 490 |
| MS.gene51054.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.19e-117 | 337 |
| MS.gene51054.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.26e-49 | 159 |
| MS.gene51054.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 4 | 19 | 199 | 71 | 249 | 2.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51054.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51054.t1 | AT3G01290 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 5.75e-170 | 472 |
| MS.gene51054.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.71e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.4:-19271576 | MS.gene51054:CDS |
| ATGTTCTCATTGCAGTAATT+AGG | 0.205184 | 8.4:-19272598 | MS.gene51054:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.4:+19272362 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.4:+19271487 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.4:+19272566 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.4:-19273137 | MS.gene51054:CDS |
| TGTTCTCATTGCAGTAATTA+GGG | 0.306159 | 8.4:-19272597 | MS.gene51054:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.4:-19273149 | MS.gene51054:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.4:-19271575 | MS.gene51054:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:-19272422 | MS.gene51054:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.4:-19273150 | MS.gene51054:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.4:-19273235 | MS.gene51054:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.4:-19273166 | MS.gene51054:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.4:-19271666 | MS.gene51054:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.4:-19272363 | MS.gene51054:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.4:-19271484 | MS.gene51054:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.4:-19271616 | MS.gene51054:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.4:-19273209 | MS.gene51054:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.4:-19273181 | MS.gene51054:CDS |
| GTCTAAATATCTCGCTGGGA+TGG | 0.480437 | 8.4:-19271721 | MS.gene51054:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.4:-19272769 | MS.gene51054:CDS |
| ATCGTTTGCCTTGTTTGCCA+AGG | 0.508315 | 8.4:+19272752 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.4:+19273099 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.4:-19273241 | MS.gene51054:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.4:-19273208 | MS.gene51054:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.4:+19273190 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:+19271545 | None:intergenic |
| TCTAAATATCTCGCTGGGAT+GGG | 0.525100 | 8.4:-19271720 | MS.gene51054:CDS |
| TTGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.4:+19272757 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.4:-19271531 | MS.gene51054:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.4:-19271687 | MS.gene51054:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.4:-19273189 | MS.gene51054:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:-19271748 | MS.gene51054:CDS |
| GCTGAGTCTAAATATCTCGC+TGG | 0.552574 | 8.4:-19271726 | MS.gene51054:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.4:-19271622 | MS.gene51054:CDS |
| CAGTGTTCCAAAACTCAACT+TGG | 0.553554 | 8.4:-19272573 | MS.gene51054:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.4:-19271812 | MS.gene51054:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.4:+19271513 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.4:-19272341 | MS.gene51054:intron |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:-19271537 | MS.gene51054:CDS |
| ATACCGTGCCTTGGCAAACA+AGG | 0.570829 | 8.4:-19272760 | MS.gene51054:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:+19271548 | None:intergenic |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.4:-19271574 | MS.gene51054:CDS |
| CTGAGTCTAAATATCTCGCT+GGG | 0.580679 | 8.4:-19271725 | MS.gene51054:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:+19273182 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:+19271737 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.4:-19272531 | MS.gene51054:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.4:-19272513 | MS.gene51054:intron |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.4:+19271466 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.4:-19273254 | MS.gene51054:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.4:-19271495 | MS.gene51054:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.4:-19272723 | MS.gene51054:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.4:-19272725 | MS.gene51054:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.4:-19271793 | MS.gene51054:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.4:-19271483 | MS.gene51054:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.4:-19271754 | MS.gene51054:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:-19271691 | MS.gene51054:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.4:-19273110 | MS.gene51054:intron |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.4:-19271753 | MS.gene51054:CDS |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.4:+19271677 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.4:+19271522 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.4:-19272724 | MS.gene51054:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:+19271592 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | + | chr8.4:19272453-19272472 | None:intergenic | 10.0% |
| !! | AATAAAAATTAAAATTATCC+CGG | + | chr8.4:19271743-19271762 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | + | chr8.4:19272454-19272473 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | - | chr8.4:19272471-19272490 | MS.gene51054:intron | 10.0% |
| !!! | GGATAATTTTAATTTTTATT+AGG | - | chr8.4:19271743-19271762 | MS.gene51054:CDS | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | + | chr8.4:19272452-19272471 | None:intergenic | 15.0% |
| !! | TTTAATATTTATTTGCTTGT+AGG | - | chr8.4:19271924-19271943 | MS.gene51054:intron | 15.0% |
| !!! | TTTATTTTATTCTCTAAAAG+AGG | - | chr8.4:19272516-19272535 | MS.gene51054:CDS | 15.0% |
| !! | AAAAATTTGAGAACAATGTA+CGG | + | chr8.4:19271882-19271901 | None:intergenic | 20.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | - | chr8.4:19272263-19272282 | MS.gene51054:intron | 20.0% |
| !! | ATGTAACAAAAAACTATGTA+GGG | - | chr8.4:19272588-19272607 | MS.gene51054:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | + | chr8.4:19271798-19271817 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | - | chr8.4:19272671-19272690 | MS.gene51054:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | - | chr8.4:19271795-19271814 | MS.gene51054:CDS | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | - | chr8.4:19272659-19272678 | MS.gene51054:intron | 20.0% |
| ! | AATCAAAATAACATAGCACA+AGG | + | chr8.4:19271775-19271794 | None:intergenic | 25.0% |
| ! | CATGTAACAAAAAACTATGT+AGG | - | chr8.4:19272587-19272606 | MS.gene51054:intron | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | + | chr8.4:19272905-19272924 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | - | chr8.4:19273166-19273185 | MS.gene51054:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.4:19273165-19273184 | MS.gene51054:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | - | chr8.4:19271885-19271904 | MS.gene51054:intron | 25.0% |
| !! | TTGTTCTCAAATTTTTCCAT+GGG | - | chr8.4:19271886-19271905 | MS.gene51054:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.4:19271520-19271539 | MS.gene51054:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.4:19272045-19272064 | MS.gene51054:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.4:19272210-19272229 | MS.gene51054:intron | 30.0% | |
| ACAAATCAACATTTATCCCA+TGG | + | chr8.4:19271905-19271924 | None:intergenic | 30.0% | |
| AGCAATAAACATGCAATTAC+TGG | - | chr8.4:19272088-19272107 | MS.gene51054:intron | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | + | chr8.4:19272718-19272737 | None:intergenic | 30.0% | |
| ATGTTCTCATTGCAGTAATT+AGG | - | chr8.4:19272143-19272162 | MS.gene51054:intron | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | + | chr8.4:19272044-19272063 | None:intergenic | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | - | chr8.4:19272719-19272738 | MS.gene51054:CDS | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | - | chr8.4:19273167-19273186 | MS.gene51054:CDS | 30.0% | |
| TGTTCTCATTGCAGTAATTA+GGG | - | chr8.4:19272144-19272163 | MS.gene51054:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.4:19272017-19272036 | MS.gene51054:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.4:19272016-19272035 | MS.gene51054:intron | 30.0% | |
| TTTGTTACATGTAAGACGTA+CGG | + | chr8.4:19272578-19272597 | None:intergenic | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | + | chr8.4:19272654-19272673 | None:intergenic | 30.0% |
| ATATGGTAATCCAAGAGCAA+AGG | + | chr8.4:19272888-19272907 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | + | chr8.4:19271707-19271726 | None:intergenic | 35.0% | |
| CCAAATATATCCTTTGCTCT+TGG | - | chr8.4:19272875-19272894 | MS.gene51054:intron | 35.0% | |
| CCAAGAGCAAAGGATATATT+TGG | + | chr8.4:19272878-19272897 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.4:19272400-19272419 | MS.gene51054:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.4:19271645-19271664 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | - | chr8.4:19272303-19272322 | MS.gene51054:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.4:19272018-19272037 | MS.gene51054:intron | 35.0% | |
| TATATTTGGCACATAGCACT+CGG | + | chr8.4:19272864-19272883 | None:intergenic | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | - | chr8.4:19271717-19271736 | MS.gene51054:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.4:19273125-19273144 | MS.gene51054:CDS | 35.0% | |
| TGCATGTTTATTGCTAAGCA+GGG | + | chr8.4:19272083-19272102 | None:intergenic | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | + | chr8.4:19271702-19271721 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | - | chr8.4:19271702-19271721 | MS.gene51054:CDS | 35.0% | |
| TTGCATGTTTATTGCTAAGC+AGG | + | chr8.4:19272084-19272103 | None:intergenic | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | - | chr8.4:19272273-19272292 | MS.gene51054:intron | 35.0% | |
| ! | GATTTTCAGAGAATGTACCA+GGG | - | chr8.4:19273097-19273116 | MS.gene51054:intron | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | - | chr8.4:19272929-19272948 | MS.gene51054:intron | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.4:19272178-19272197 | None:intergenic | 35.0% |
| !! | TATACACAGAGTACTGAAAG+TGG | + | chr8.4:19271843-19271862 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.4:19273152-19273171 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | - | chr8.4:19272676-19272695 | MS.gene51054:intron | 35.0% |
| AAGACGTACGGTAAGGAAAA+AGG | + | chr8.4:19272566-19272585 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | + | chr8.4:19272641-19272660 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | + | chr8.4:19272441-19272460 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.4:19273199-19273218 | None:intergenic | 40.0% | |
| ATGGATACTTTCTCTTTGGC+CGG | - | chr8.4:19271721-19271740 | MS.gene51054:CDS | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.4:19271631-19271650 | MS.gene51054:CDS | 40.0% | |
| CAGTGTTCCAAAACTCAACT+TGG | - | chr8.4:19272168-19272187 | MS.gene51054:intron | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | + | chr8.4:19271689-19271708 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | + | chr8.4:19272693-19272712 | None:intergenic | 40.0% | |
| CTGAGTCTAAATATCTCGCT+GGG | - | chr8.4:19273016-19273035 | MS.gene51054:intron | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | - | chr8.4:19273119-19273138 | MS.gene51054:CDS | 40.0% | |
| TACATGTAAGACGTACGGTA+AGG | + | chr8.4:19272573-19272592 | None:intergenic | 40.0% | |
| TCTAAATATCTCGCTGGGAT+GGG | - | chr8.4:19273021-19273040 | MS.gene51054:intron | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.4:19271500-19271519 | MS.gene51054:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | + | chr8.4:19272926-19272945 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.4:19272228-19272247 | MS.gene51054:intron | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.4:19271575-19271594 | MS.gene51054:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.4:19271972-19271991 | MS.gene51054:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.4:19271572-19271591 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | - | chr8.4:19273096-19273115 | MS.gene51054:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.4:19271506-19271525 | MS.gene51054:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.4:19271532-19271551 | MS.gene51054:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | - | chr8.4:19272703-19272722 | MS.gene51054:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.4:19271487-19271506 | MS.gene51054:CDS | 40.0% |
| !!! | CAAGTTGAGTTTTGGAACAC+TGG | + | chr8.4:19272170-19272189 | None:intergenic | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | + | chr8.4:19273278-19273297 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.4:19272319-19272338 | MS.gene51054:intron | 45.0% | |
| CGTACGGTAAGGAAAAAGGT+AGG | + | chr8.4:19272562-19272581 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | - | chr8.4:19272378-19272397 | MS.gene51054:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | + | chr8.4:19272382-19272401 | None:intergenic | 45.0% | |
| GCTGAGTCTAAATATCTCGC+TGG | - | chr8.4:19273015-19273034 | MS.gene51054:intron | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.4:19273257-19273276 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | - | chr8.4:19273075-19273094 | MS.gene51054:intron | 45.0% | |
| GTCTAAATATCTCGCTGGGA+TGG | - | chr8.4:19273020-19273039 | MS.gene51054:intron | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | + | chr8.4:19273067-19273086 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.4:19273246-19273265 | MS.gene51054:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.4:19273204-19273223 | MS.gene51054:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+GGG | - | chr8.4:19271722-19271741 | MS.gene51054:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.4:19271635-19271654 | MS.gene51054:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.4:19272988-19273007 | MS.gene51054:intron | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | - | chr8.4:19271591-19271610 | MS.gene51054:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | + | chr8.4:19273117-19273136 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | - | chr8.4:19271604-19271623 | MS.gene51054:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | + | chr8.4:19271580-19271599 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.4:19273257-19273276 | MS.gene51054:CDS | 45.0% |
| !! | ATCGTTTGCCTTGTTTGCCA+AGG | + | chr8.4:19271992-19272011 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.4:19273258-19273277 | MS.gene51054:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | - | chr8.4:19272691-19272710 | MS.gene51054:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.4:19271533-19271552 | MS.gene51054:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | - | chr8.4:19271981-19272000 | MS.gene51054:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.4:19273054-19273073 | MS.gene51054:intron | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.4:19271562-19271581 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.4:19271560-19271579 | MS.gene51054:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.4:19272987-19273006 | MS.gene51054:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.4:19273196-19273215 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | - | chr8.4:19272948-19272967 | MS.gene51054:intron | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.4:19273210-19273229 | MS.gene51054:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | - | chr8.4:19273050-19273069 | MS.gene51054:intron | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | - | chr8.4:19271592-19271611 | MS.gene51054:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.4:19273007-19273026 | None:intergenic | 50.0% | |
| !! | TTGCCTTGTTTGCCAAGGCA+CGG | + | chr8.4:19271987-19272006 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.4:19272993-19273012 | MS.gene51054:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.4:19271554-19271573 | None:intergenic | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.4:19273222-19273241 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.4:19271552-19271571 | MS.gene51054:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.4:19273231-19273250 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19271464 | 19273299 | 19271464 | ID=MS.gene51054 |
| chr8.4 | mRNA | 19271464 | 19273299 | 19271464 | ID=MS.gene51054.t1;Parent=MS.gene51054 |
| chr8.4 | exon | 19273111 | 19273299 | 19273111 | ID=MS.gene51054.t1.exon1;Parent=MS.gene51054.t1 |
| chr8.4 | CDS | 19273111 | 19273299 | 19273111 | ID=cds.MS.gene51054.t1;Parent=MS.gene51054.t1 |
| chr8.4 | exon | 19272697 | 19272817 | 19272697 | ID=MS.gene51054.t1.exon2;Parent=MS.gene51054.t1 |
| chr8.4 | CDS | 19272697 | 19272817 | 19272697 | ID=cds.MS.gene51054.t1;Parent=MS.gene51054.t1 |
| chr8.4 | exon | 19272514 | 19272605 | 19272514 | ID=MS.gene51054.t1.exon3;Parent=MS.gene51054.t1 |
| chr8.4 | CDS | 19272514 | 19272605 | 19272514 | ID=cds.MS.gene51054.t1;Parent=MS.gene51054.t1 |
| chr8.4 | exon | 19272342 | 19272438 | 19272342 | ID=MS.gene51054.t1.exon4;Parent=MS.gene51054.t1 |
| chr8.4 | CDS | 19272342 | 19272438 | 19272342 | ID=cds.MS.gene51054.t1;Parent=MS.gene51054.t1 |
| chr8.4 | exon | 19271464 | 19271825 | 19271464 | ID=MS.gene51054.t1.exon5;Parent=MS.gene51054.t1 |
| chr8.4 | CDS | 19271464 | 19271825 | 19271464 | ID=cds.MS.gene51054.t1;Parent=MS.gene51054.t1 |
| Gene Sequence |
| Protein sequence |
