AlfalfaGEDB | MS.gene51865

M. sativa cultivar XinJiangDaYe / MS.gene51865

KEGG: -
GO: -
PFAM: PF07797.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51865.t1	XP_013449506.1	98.6	217	2	1	1	216	1	217	8.70E-115	422.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51865.t1	A0A072U1E7	98.6	217	2	1	1	216	1	217	6.3e-115	422.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049786	MS.gene51865	0.80592	1.06E-49	-1.69E-46
MS.gene050737	MS.gene51865	0.800947	1.13E-48	-1.69E-46
MS.gene050941	MS.gene51865	0.807049	6.11E-50	-1.69E-46
MS.gene051147	MS.gene51865	0.806517	7.92E-50	-1.69E-46
MS.gene052493	MS.gene51865	0.817909	2.58E-52	-1.69E-46
MS.gene052674	MS.gene51865	0.80708	6.02E-50	-1.69E-46
MS.gene052675	MS.gene51865	0.800469	1.42E-48	-1.69E-46
MS.gene052677	MS.gene51865	0.803772	2.97E-49	-1.69E-46
MS.gene054467	MS.gene51865	0.805545	1.27E-49	-1.69E-46
MS.gene054468	MS.gene51865	0.812339	4.46E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51865.t1	MTR_7g085680	99.078	217	1	1	1	216	1	217	1.09e-159	440
MS.gene51865.t1	MTR_1g016800	38.247	251	106	8	12	216	46	293	4.68e-43	146
MS.gene51865.t1	MTR_8g070650	37.662	231	109	8	17	216	27	253	3.41e-32	117
MS.gene51865.t1	MTR_6g083920	27.442	215	112	4	20	194	17	227	1.57e-14	70.1
MS.gene51865.t1	MTR_5g056110	39.394	66	40	0	135	200	154	219	1.69e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51865.t1	AT1G55340	55.656	221	72	8	4	216	3	205	2.51e-70	213
MS.gene51865.t1	AT1G55340	54.338	219	68	6	4	216	3	195	1.99e-68	208
MS.gene51865.t1	AT3G03880	54.286	210	70	7	13	216	4	193	1.98e-63	195
MS.gene51865.t1	AT4G20300	43.949	157	66	5	82	216	196	352	8.10e-30	113
MS.gene51865.t1	AT4G20300	43.885	139	58	4	82	200	196	334	6.10e-26	103

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Find 54 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGGCATCACCGGAGA+AGG	0.542456	7.4:+21743177	MS.gene51865:CDS
AACAACCTAATCGTCTCACA+AGG	0.670444	7.4:+21742547	MS.gene51865:CDS
AACAACCTTGTGAGACGATT+AGG	0.386278	7.4:-21742552	None:intergenic
AACATCGCAAGTGCCTTTAC+CGG	0.498467	7.4:-21743239	None:intergenic
AACCAGAGTTCTTCTTGCAG+TGG	0.563420	7.4:+21742370	MS.gene51865:CDS
AACTTACCAATAAGCTTCTT+TGG	0.237998	7.4:-21743396	None:intergenic
AAGAAAGCTTAATTCTGGAG+TGG	0.623077	7.4:+21742470	MS.gene51865:CDS
AAGATCCTCGGATTTCAACT+AGG	0.502257	7.4:+21742427	MS.gene51865:CDS
AAGATCGATACTACACGACG+AGG	0.699452	7.4:+21743200	MS.gene51865:CDS
AATCATCCAAAGAAGCTTAT+TGG	0.258024	7.4:+21743390	MS.gene51865:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTAACAAGAAGGTAAG+TGG	+	chr7.4:21743607-21743626	MS.gene51865:intron	30.0%
AACTTACCAATAAGCTTCTT+TGG	-	chr7.4:21743399-21743418	None:intergenic	30.0%
AATCATCCAAAGAAGCTTAT+TGG	+	chr7.4:21743390-21743409	MS.gene51865:CDS	30.0%
ACTTGTATTCTGTTCTTTGA+TGG	+	chr7.4:21742995-21743014	MS.gene51865:intron	30.0%
AGATGAAGATGAAGATAAAG+AGG	-	chr7.4:21742612-21742631	None:intergenic	30.0%
ATCAGAAGAAAGCTTAATTC+TGG	+	chr7.4:21742465-21742484	MS.gene51865:CDS	30.0%
GAAGATAAGCATAAAAGAGA+GGG	+	chr7.4:21742856-21742875	MS.gene51865:intron	30.0%
TCAAGAGAGATATGAAGTTA+GGG	+	chr7.4:21743579-21743598	MS.gene51865:CDS	30.0%
TCATCTTATTCTTCCTTGTT+TGG	+	chr7.4:21742626-21742645	MS.gene51865:intron	30.0%
TGAAGATAAGCATAAAAGAG+AGG	+	chr7.4:21742855-21742874	MS.gene51865:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	21742327	21743776	21742327	ID=MS.gene51865
chr7.4	mRNA	21742327	21743776	21742327	ID=MS.gene51865.t1;Parent=MS.gene51865
chr7.4	exon	21742327	21742568	21742327	ID=MS.gene51865.t1.exon1;Parent=MS.gene51865.t1
chr7.4	CDS	21742327	21742568	21742327	ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1
chr7.4	exon	21743132	21743411	21743132	ID=MS.gene51865.t1.exon2;Parent=MS.gene51865.t1
chr7.4	CDS	21743132	21743411	21743132	ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1
chr7.4	exon	21743544	21743621	21743544	ID=MS.gene51865.t1.exon3;Parent=MS.gene51865.t1
chr7.4	CDS	21743544	21743621	21743544	ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1
chr7.4	exon	21743726	21743776	21743726	ID=MS.gene51865.t1.exon4;Parent=MS.gene51865.t1
chr7.4	CDS	21743726	21743776	21743726	ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1

Gene Sequence

>MS.gene51865

ATGGAGACAGAAGAGAGGAACCAAAGAGCATGTAAGGCAACAGAACCAGAGTTCTTCTTGCAGTGGGGAAACAGGAAGCGTTTGAGATGTGTGAGGGTGAAAGATCCTCGGATTTCAACTAGGCTTAACGGTGGTGTAATCAGAAGAAAGCTTAATTCTGGAGTGGAGAATCATCGTTCTGGTGTTACTGAGAAAGAAAGTTCTCATCTTCATCATCATCAACAACCTAATCGTCTCACAAGGTTGTTGAAAACGACCATAACAAATGGATCTTCTCGGATTCCTCTTTATCTTCATCTTCATCTTATTCTTCCTTGTTTGGTTCCTCTGAAAAAAAAAACTGGATTTTGGTTTGTGAAAAATGATGGTGTTTCAGTCTTGTTGTTGCTAAAAAGAAAAACTTTCAATTTTTTCATTCCTTGTTTGATTTTGAGTAAAAGAAAAAATGGTTTTTTTGGTGTTGTTGATTCAATGATTCAATGTAATGATGTTGTTTTCATTTGGTTGGTTAATGGGGAATTTTCTCAGTGAAGATAAGCATAAAAGAGAGGGTAAAAATTCCATTTTTTCAGTGTTTGTACGCGTAGAAAAATAAAGATAAAAAAAATGATTTTTTGTGTTTTAATGATGTAAAAATTGATTTGTTTTTGCATACCCAGATGATATAAACTTGTATTCTGTTCTTTGATGGATTTTTTTTCAGAAGGGTATTGGATCTCTGATTGCTACAAAAATGTCTGAAATTTTGATGTTTTTTTTTTCTTCAATTTTTTATGTGATTTTGATTGGAAGTTTTGGTATGCAGGAATTCCGATGGAACTATTCTACGACCGGCGGCCGGAGATAACAGAAAATCGGCATCACCGGAGAAGGAAGATCGATACTACACGACGAGGGGGTCAGCAGAGGACACCGGTAAAGGCACTTGCGATGTTATCAATGGAGAAGAAAAAGCTCTTGTTTGGCCTAAGCTTTACATTACTCTCTCAAGCAAAGAGAAAGAAGAAGATTTTCTTGCCATGAAAGGTTGTAAGCTTCCTCAAAGACCCAAAAAGAGGGCCAAAATCATCCAAAGAAGCTTATTGGTAAGTTTCTTTTTACTTCAAAAATTTGATTTTTATGTTGTTTTTATTATGGTTAATTGGGTTTGGATCTTGTTAATTTTCATCATCTTATGTCTAATGTTGTCCACATGTTTGTTTGGTGTTTGTTTACAGTTGGTAAGTCCTGGAGCATGGTTGACTGATATGTGTCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTAACAAGAAGGTAAGTGGTTGTTGGTGTTGATGTGTTAATAAAGTTTAAACCTTTTTTATTTTATCTCTTAATTTTAATTTTTTCTAAATATAATTTTTGGGTTTTTGATGCAGAGGCCAAGAGGATTGAAGGCTATGGGGAGTGTGGAAAGTGATTCTGAATGA

Protein sequence

>MS.gene51865.t1

METEERNQRACKATEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGVIRRKLNSGVENHRSGVTEKESSHLHHHQQPNRLTRNSDGTILRPAAGDNRKSASPEKEDRYYTTRGSAEDTGKGTCDVINGEEKALVWPKLYITLSSKEKEEDFLAMKGCKLPQRPKKRAKIIQRSLLLVSPGAWLTDMCQERYEVREKKSNKKRPRGLKAMGSVESDSE