Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51865.t1 | XP_013449506.1 | 98.6 | 217 | 2 | 1 | 1 | 216 | 1 | 217 | 8.70E-115 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51865.t1 | A0A072U1E7 | 98.6 | 217 | 2 | 1 | 1 | 216 | 1 | 217 | 6.3e-115 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049786 | MS.gene51865 | 0.80592 | 1.06E-49 | -1.69E-46 |
| MS.gene050737 | MS.gene51865 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene51865 | 0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene051147 | MS.gene51865 | 0.806517 | 7.92E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene51865 | 0.817909 | 2.58E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene51865 | 0.80708 | 6.02E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene51865 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene51865 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene51865 | 0.805545 | 1.27E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene51865 | 0.812339 | 4.46E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene51865 | 0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene51865 | 0.818045 | 2.41E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene51865 | 0.814537 | 1.46E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene51865 | 0.823919 | 1.07E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene51865 | 0.824025 | 1.01E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene51865 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene51865 | 0.806492 | 8.01E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene51865 | 0.852815 | 3.60E-61 | -1.69E-46 |
| MS.gene060802 | MS.gene51865 | 0.81149 | 6.82E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene51865 | 0.826365 | 2.82E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51865.t1 | MTR_7g085680 | 99.078 | 217 | 1 | 1 | 1 | 216 | 1 | 217 | 1.09e-159 | 440 |
| MS.gene51865.t1 | MTR_1g016800 | 38.247 | 251 | 106 | 8 | 12 | 216 | 46 | 293 | 4.68e-43 | 146 |
| MS.gene51865.t1 | MTR_8g070650 | 37.662 | 231 | 109 | 8 | 17 | 216 | 27 | 253 | 3.41e-32 | 117 |
| MS.gene51865.t1 | MTR_6g083920 | 27.442 | 215 | 112 | 4 | 20 | 194 | 17 | 227 | 1.57e-14 | 70.1 |
| MS.gene51865.t1 | MTR_5g056110 | 39.394 | 66 | 40 | 0 | 135 | 200 | 154 | 219 | 1.69e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51865.t1 | AT1G55340 | 55.656 | 221 | 72 | 8 | 4 | 216 | 3 | 205 | 2.51e-70 | 213 |
| MS.gene51865.t1 | AT1G55340 | 54.338 | 219 | 68 | 6 | 4 | 216 | 3 | 195 | 1.99e-68 | 208 |
| MS.gene51865.t1 | AT3G03880 | 54.286 | 210 | 70 | 7 | 13 | 216 | 4 | 193 | 1.98e-63 | 195 |
| MS.gene51865.t1 | AT4G20300 | 43.949 | 157 | 66 | 5 | 82 | 216 | 196 | 352 | 8.10e-30 | 113 |
| MS.gene51865.t1 | AT4G20300 | 43.885 | 139 | 58 | 4 | 82 | 200 | 196 | 334 | 6.10e-26 | 103 |
Find 54 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTTCTTTGGATGATTT+TGG | 0.165257 | 7.4:-21743386 | None:intergenic |
| AACTTACCAATAAGCTTCTT+TGG | 0.237998 | 7.4:-21743396 | None:intergenic |
| CTGTTGCCTTACATGCTCTT+TGG | 0.238559 | 7.4:-21742347 | None:intergenic |
| AATCATCCAAAGAAGCTTAT+TGG | 0.258024 | 7.4:+21743390 | MS.gene51865:CDS |
| ATCAGAAGAAAGCTTAATTC+TGG | 0.302031 | 7.4:+21742465 | MS.gene51865:CDS |
| AGGAAGCTTACAACCTTTCA+TGG | 0.340391 | 7.4:-21743344 | None:intergenic |
| GTCAAGAGAGATATGAAGTT+AGG | 0.367836 | 7.4:+21743578 | MS.gene51865:CDS |
| AACAACCTTGTGAGACGATT+AGG | 0.386278 | 7.4:-21742552 | None:intergenic |
| TCTTCTTGCAGTGGGGAAAC+AGG | 0.395699 | 7.4:+21742379 | MS.gene51865:CDS |
| CGGATTTCAACTAGGCTTAA+CGG | 0.415814 | 7.4:+21742435 | MS.gene51865:CDS |
| TCAAGAGAGATATGAAGTTA+GGG | 0.417350 | 7.4:+21743579 | MS.gene51865:CDS |
| TGTTTACAGTTGGTAAGTCC+TGG | 0.420464 | 7.4:+21743535 | MS.gene51865:intron |
| CCCATAGCCTTCAATCCTCT+TGG | 0.424567 | 7.4:-21743729 | None:intergenic |
| GAGGAACCAAAGAGCATGTA+AGG | 0.432240 | 7.4:+21742341 | MS.gene51865:CDS |
| GGAGTGGAGAATCATCGTTC+TGG | 0.453670 | 7.4:+21742486 | MS.gene51865:CDS |
| GGCCGGAGATAACAGAAAAT+CGG | 0.460576 | 7.4:+21743162 | MS.gene51865:CDS |
| CCAAGAGGATTGAAGGCTAT+GGG | 0.481069 | 7.4:+21743729 | MS.gene51865:CDS |
| GCAGAGGCCAAGAGGATTGA+AGG | 0.486507 | 7.4:+21743722 | MS.gene51865:intron |
| GCCAAGAGGATTGAAGGCTA+TGG | 0.494932 | 7.4:+21743728 | MS.gene51865:CDS |
| AACATCGCAAGTGCCTTTAC+CGG | 0.498467 | 7.4:-21743239 | None:intergenic |
| AAGATCCTCGGATTTCAACT+AGG | 0.502257 | 7.4:+21742427 | MS.gene51865:CDS |
| ACCAGAGTTCTTCTTGCAGT+GGG | 0.504536 | 7.4:+21742371 | MS.gene51865:CDS |
| CCCCACTGCAAGAAGAACTC+TGG | 0.514893 | 7.4:-21742372 | None:intergenic |
| TCAGCAGAGGACACCGGTAA+AGG | 0.516208 | 7.4:+21743226 | MS.gene51865:CDS |
| GGAGAAGAAAAGTAACAAGA+AGG | 0.520874 | 7.4:+21743600 | MS.gene51865:CDS |
| GAGAGAGTAATGTAAAGCTT+AGG | 0.521687 | 7.4:-21743292 | None:intergenic |
| ATTGAAGGCTATGGGGAGTG+TGG | 0.522393 | 7.4:+21743737 | MS.gene51865:CDS |
| GGCACTTGCGATGTTATCAA+TGG | 0.530662 | 7.4:+21743247 | MS.gene51865:CDS |
| TAACAGAAAATCGGCATCAC+CGG | 0.532579 | 7.4:+21743171 | MS.gene51865:CDS |
| ATATCAGTCAACCATGCTCC+AGG | 0.532665 | 7.4:-21743553 | None:intergenic |
| AAAATCGGCATCACCGGAGA+AGG | 0.542456 | 7.4:+21743177 | MS.gene51865:CDS |
| TTGGTATGCAGGAATTCCGA+TGG | 0.546689 | 7.4:+21743121 | MS.gene51865:intron |
| TAGTATCGATCTTCCTTCTC+CGG | 0.549815 | 7.4:-21743190 | None:intergenic |
| ACTATTCTACGACCGGCGGC+CGG | 0.561495 | 7.4:+21743145 | MS.gene51865:CDS |
| AACCAGAGTTCTTCTTGCAG+TGG | 0.563420 | 7.4:+21742370 | MS.gene51865:CDS |
| CGATGGAACTATTCTACGAC+CGG | 0.568292 | 7.4:+21743138 | MS.gene51865:CDS |
| AGTTGGTAAGTCCTGGAGCA+TGG | 0.569217 | 7.4:+21743542 | MS.gene51865:intron |
| TTTCTGTTATCTCCGGCCGC+CGG | 0.574206 | 7.4:-21743157 | None:intergenic |
| GTGTGAGGGTGAAAGATCCT+CGG | 0.605489 | 7.4:+21742415 | MS.gene51865:CDS |
| AAGAAAGCTTAATTCTGGAG+TGG | 0.623077 | 7.4:+21742470 | MS.gene51865:CDS |
| CGGTCGTAGAATAGTTCCAT+CGG | 0.626224 | 7.4:-21743137 | None:intergenic |
| TAGAAATGGAGACAGAAGAG+AGG | 0.628747 | 7.4:+21742322 | None:intergenic |
| AGATCGATACTACACGACGA+GGG | 0.631631 | 7.4:+21743201 | MS.gene51865:CDS |
| GATCGATACTACACGACGAG+GGG | 0.647579 | 7.4:+21743202 | MS.gene51865:CDS |
| CAAGAGGATTGAAGGCTATG+GGG | 0.656812 | 7.4:+21743730 | MS.gene51865:CDS |
| AACAACCTAATCGTCTCACA+AGG | 0.670444 | 7.4:+21742547 | MS.gene51865:CDS |
| ATCGATACTACACGACGAGG+GGG | 0.671513 | 7.4:+21743203 | MS.gene51865:CDS |
| CCAGAGTTCTTCTTGCAGTG+GGG | 0.679245 | 7.4:+21742372 | MS.gene51865:CDS |
| TGGAACTATTCTACGACCGG+CGG | 0.694045 | 7.4:+21743141 | MS.gene51865:CDS |
| AAGATCGATACTACACGACG+AGG | 0.699452 | 7.4:+21743200 | MS.gene51865:CDS |
| TTAAGCCTAGTTGAAATCCG+AGG | 0.705168 | 7.4:-21742432 | None:intergenic |
| GAAGCGTTTGAGATGTGTGA+GGG | 0.718640 | 7.4:+21742401 | MS.gene51865:CDS |
| ATTTCAACTAGGCTTAACGG+TGG | 0.734742 | 7.4:+21742438 | MS.gene51865:CDS |
| GGAAGCGTTTGAGATGTGTG+AGG | 0.737974 | 7.4:+21742400 | MS.gene51865:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAGAGATAAAATAAAAA+AGG | - | chr7.4:21743665-21743684 | None:intergenic | 10.0% |
| !!! | TTTTTATGTTGTTTTTATTA+TGG | + | chr7.4:21743441-21743460 | MS.gene51865:intron | 10.0% |
| !!! | AAAAGAAAAAATGGTTTTTT+TGG | + | chr7.4:21742762-21742781 | MS.gene51865:intron | 15.0% |
| !!! | ATTTTGAGTAAAAGAAAAAA+TGG | + | chr7.4:21742753-21742772 | MS.gene51865:intron | 15.0% |
| !!! | ATTTTTTATGTGATTTTGAT+TGG | + | chr7.4:21743093-21743112 | MS.gene51865:intron | 15.0% |
| !!! | TGTTTTTATTATGGTTAATT+GGG | + | chr7.4:21743450-21743469 | MS.gene51865:intron | 15.0% |
| !!! | TTGTTTTTATTATGGTTAAT+TGG | + | chr7.4:21743449-21743468 | MS.gene51865:intron | 15.0% |
| !! | AATACAAGTTTATATCATCT+GGG | - | chr7.4:21742984-21743003 | None:intergenic | 20.0% |
| !!! | TGAAAAAAAAAACTGGATTT+TGG | + | chr7.4:21742655-21742674 | MS.gene51865:intron | 20.0% |
| ! | GAATACAAGTTTATATCATC+TGG | - | chr7.4:21742985-21743004 | None:intergenic | 25.0% |
| ! | TTATTATGGTTAATTGGGTT+TGG | + | chr7.4:21743455-21743474 | MS.gene51865:intron | 25.0% |
| !! | CTTTTACTCAAAATCAAACA+AGG | - | chr7.4:21742747-21742766 | None:intergenic | 25.0% |
| !!! | AATCCAGTTTTTTTTTTCAG+AGG | - | chr7.4:21742654-21742673 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCAGAAGGGTAT+TGG | + | chr7.4:21743018-21743037 | MS.gene51865:intron | 25.0% |
| !!! | GTAATGATGTTGTTTTCATT+TGG | + | chr7.4:21742808-21742827 | MS.gene51865:intron | 25.0% |
| !!! | TGATGGATTTTTTTTCAGAA+GGG | + | chr7.4:21743012-21743031 | MS.gene51865:intron | 25.0% |
| !!! | TTGATGGATTTTTTTTCAGA+AGG | + | chr7.4:21743011-21743030 | MS.gene51865:intron | 25.0% |
| !!! | TTTTCATTTGGTTGGTTAAT+GGG | + | chr7.4:21742820-21742839 | MS.gene51865:intron | 25.0% |
| !!! | TTTTGGTTTGTGAAAAATGA+TGG | + | chr7.4:21742672-21742691 | MS.gene51865:intron | 25.0% |
| AAAAGTAACAAGAAGGTAAG+TGG | + | chr7.4:21743607-21743626 | MS.gene51865:intron | 30.0% | |
| AACTTACCAATAAGCTTCTT+TGG | - | chr7.4:21743399-21743418 | None:intergenic | 30.0% | |
| AATCATCCAAAGAAGCTTAT+TGG | + | chr7.4:21743390-21743409 | MS.gene51865:CDS | 30.0% | |
| ACTTGTATTCTGTTCTTTGA+TGG | + | chr7.4:21742995-21743014 | MS.gene51865:intron | 30.0% | |
| AGATGAAGATGAAGATAAAG+AGG | - | chr7.4:21742612-21742631 | None:intergenic | 30.0% | |
| ATCAGAAGAAAGCTTAATTC+TGG | + | chr7.4:21742465-21742484 | MS.gene51865:CDS | 30.0% | |
| GAAGATAAGCATAAAAGAGA+GGG | + | chr7.4:21742856-21742875 | MS.gene51865:intron | 30.0% | |
| TCAAGAGAGATATGAAGTTA+GGG | + | chr7.4:21743579-21743598 | MS.gene51865:CDS | 30.0% | |
| TCATCTTATTCTTCCTTGTT+TGG | + | chr7.4:21742626-21742645 | MS.gene51865:intron | 30.0% | |
| TGAAGATAAGCATAAAAGAG+AGG | + | chr7.4:21742855-21742874 | MS.gene51865:intron | 30.0% | |
| TTGAAAACGACCATAACAAA+TGG | + | chr7.4:21742573-21742592 | MS.gene51865:intron | 30.0% | |
| ! | GTTCCTCTGAAAAAAAAAAC+TGG | + | chr7.4:21742648-21742667 | MS.gene51865:intron | 30.0% |
| ! | TAAGCTTCTTTGGATGATTT+TGG | - | chr7.4:21743389-21743408 | None:intergenic | 30.0% |
| ! | TTTCATTTGGTTGGTTAATG+GGG | + | chr7.4:21742821-21742840 | MS.gene51865:intron | 30.0% |
| !! | GTTTTCATTTGGTTGGTTAA+TGG | + | chr7.4:21742819-21742838 | MS.gene51865:intron | 30.0% |
| !!! | GTGATTTTGATTGGAAGTTT+TGG | + | chr7.4:21743102-21743121 | MS.gene51865:intron | 30.0% |
| !!! | TGATGTTGTTTTCATTTGGT+TGG | + | chr7.4:21742812-21742831 | MS.gene51865:intron | 30.0% |
| ACAAACACCAAACAAACATG+TGG | - | chr7.4:21743518-21743537 | None:intergenic | 35.0% | |
| ATGTTGTCCACATGTTTGTT+TGG | + | chr7.4:21743508-21743527 | MS.gene51865:intron | 35.0% | |
| CCATAACAAATGGATCTTCT+CGG | + | chr7.4:21742583-21742602 | MS.gene51865:intron | 35.0% | |
| GAGAAGAAAAAGCTCTTGTT+TGG | + | chr7.4:21743269-21743288 | MS.gene51865:CDS | 35.0% | |
| GAGAGAGTAATGTAAAGCTT+AGG | - | chr7.4:21743295-21743314 | None:intergenic | 35.0% | |
| GCGTACAAACACTGAAAAAA+TGG | - | chr7.4:21742890-21742909 | None:intergenic | 35.0% | |
| GGAGAAGAAAAGTAACAAGA+AGG | + | chr7.4:21743600-21743619 | MS.gene51865:CDS | 35.0% | |
| GTCAAGAGAGATATGAAGTT+AGG | + | chr7.4:21743578-21743597 | MS.gene51865:CDS | 35.0% | |
| ! | AAGAAAGCTTAATTCTGGAG+TGG | + | chr7.4:21742470-21742489 | MS.gene51865:CDS | 35.0% |
| ! | GAAGATTTTCTTGCCATGAA+AGG | + | chr7.4:21743331-21743350 | MS.gene51865:CDS | 35.0% |
| !! | ATGATTTTGGCCCTCTTTTT+GGG | - | chr7.4:21743376-21743395 | None:intergenic | 35.0% |
| !! | GTTTGGTGTTTGTTTACAGT+TGG | + | chr7.4:21743525-21743544 | MS.gene51865:intron | 35.0% |
| !! | TTTTTCAGAGGAACCAAACA+AGG | - | chr7.4:21742642-21742661 | None:intergenic | 35.0% |
| !!! | TTTTTGGGTTTTTGATGCAG+AGG | + | chr7.4:21743706-21743725 | MS.gene51865:intron | 35.0% |
| AACAACCTAATCGTCTCACA+AGG | + | chr7.4:21742547-21742566 | MS.gene51865:CDS | 40.0% | |
| AACAACCTTGTGAGACGATT+AGG | - | chr7.4:21742555-21742574 | None:intergenic | 40.0% | |
| AAGATCCTCGGATTTCAACT+AGG | + | chr7.4:21742427-21742446 | MS.gene51865:CDS | 40.0% | |
| ACAAGAAGGTAAGTGGTTGT+TGG | + | chr7.4:21743614-21743633 | MS.gene51865:intron | 40.0% | |
| AGGAAGCTTACAACCTTTCA+TGG | - | chr7.4:21743347-21743366 | None:intergenic | 40.0% | |
| ATTTCAACTAGGCTTAACGG+TGG | + | chr7.4:21742438-21742457 | MS.gene51865:CDS | 40.0% | |
| CGGATTTCAACTAGGCTTAA+CGG | + | chr7.4:21742435-21742454 | MS.gene51865:CDS | 40.0% | |
| TAACAGAAAATCGGCATCAC+CGG | + | chr7.4:21743171-21743190 | MS.gene51865:CDS | 40.0% | |
| TCCTCAAAGACCCAAAAAGA+GGG | + | chr7.4:21743363-21743382 | MS.gene51865:CDS | 40.0% | |
| TTAAGCCTAGTTGAAATCCG+AGG | - | chr7.4:21742435-21742454 | None:intergenic | 40.0% | |
| TTCCTCAAAGACCCAAAAAG+AGG | + | chr7.4:21743362-21743381 | MS.gene51865:CDS | 40.0% | |
| ! | CCGAGAAGATCCATTTGTTA+TGG | - | chr7.4:21742586-21742605 | None:intergenic | 40.0% |
| !! | GATGATTTTGGCCCTCTTTT+TGG | - | chr7.4:21743377-21743396 | None:intergenic | 40.0% |
| !! | GATTGGAAGTTTTGGTATGC+AGG | + | chr7.4:21743110-21743129 | MS.gene51865:intron | 40.0% |
| !! | TAGTATCGATCTTCCTTCTC+CGG | - | chr7.4:21743193-21743212 | None:intergenic | 40.0% |
| !! | TGTTTACAGTTGGTAAGTCC+TGG | + | chr7.4:21743535-21743554 | MS.gene51865:intron | 40.0% |
| !!! | TGCCGATTTTCTGTTATCTC+CGG | - | chr7.4:21743167-21743186 | None:intergenic | 40.0% |
| AACATCGCAAGTGCCTTTAC+CGG | - | chr7.4:21743242-21743261 | None:intergenic | 45.0% | |
| AACCAGAGTTCTTCTTGCAG+TGG | + | chr7.4:21742370-21742389 | MS.gene51865:CDS | 45.0% | |
| AAGATCGATACTACACGACG+AGG | + | chr7.4:21743200-21743219 | MS.gene51865:CDS | 45.0% | |
| ACCAGAGTTCTTCTTGCAGT+GGG | + | chr7.4:21742371-21742390 | MS.gene51865:CDS | 45.0% | |
| AGATCGATACTACACGACGA+GGG | + | chr7.4:21743201-21743220 | MS.gene51865:CDS | 45.0% | |
| ATATCAGTCAACCATGCTCC+AGG | - | chr7.4:21743556-21743575 | None:intergenic | 45.0% | |
| CAAGAGGATTGAAGGCTATG+GGG | + | chr7.4:21743730-21743749 | MS.gene51865:CDS | 45.0% | |
| CCAAGAGGATTGAAGGCTAT+GGG | + | chr7.4:21743729-21743748 | MS.gene51865:CDS | 45.0% | |
| CGATGGAACTATTCTACGAC+CGG | + | chr7.4:21743138-21743157 | MS.gene51865:CDS | 45.0% | |
| CGGTCGTAGAATAGTTCCAT+CGG | - | chr7.4:21743140-21743159 | None:intergenic | 45.0% | |
| CTGTTGCCTTACATGCTCTT+TGG | - | chr7.4:21742350-21742369 | None:intergenic | 45.0% | |
| GGCACTTGCGATGTTATCAA+TGG | + | chr7.4:21743247-21743266 | MS.gene51865:CDS | 45.0% | |
| GGCCGGAGATAACAGAAAAT+CGG | + | chr7.4:21743162-21743181 | MS.gene51865:CDS | 45.0% | |
| TTGGTATGCAGGAATTCCGA+TGG | + | chr7.4:21743121-21743140 | MS.gene51865:intron | 45.0% | |
| ! | GAAGCGTTTGAGATGTGTGA+GGG | + | chr7.4:21742401-21742420 | MS.gene51865:CDS | 45.0% |
| ! | GAGGAACCAAAGAGCATGTA+AGG | + | chr7.4:21742341-21742360 | MS.gene51865:CDS | 45.0% |
| ! | TTTTTGATGCAGAGGCCAAG+AGG | + | chr7.4:21743714-21743733 | MS.gene51865:intron | 45.0% |
| !!! | TTTTTCTAAATATAATTTTT+GGG | + | chr7.4:21743691-21743710 | MS.gene51865:intron | 5.0% |
| !!! | TTTTTTCTAAATATAATTTT+TGG | + | chr7.4:21743690-21743709 | MS.gene51865:intron | 5.0% |
| AAAATCGGCATCACCGGAGA+AGG | + | chr7.4:21743177-21743196 | MS.gene51865:CDS | 50.0% | |
| ATCGATACTACACGACGAGG+GGG | + | chr7.4:21743203-21743222 | MS.gene51865:CDS | 50.0% | |
| ATTGAAGGCTATGGGGAGTG+TGG | + | chr7.4:21743737-21743756 | MS.gene51865:CDS | 50.0% | |
| CCAGAGTTCTTCTTGCAGTG+GGG | + | chr7.4:21742372-21742391 | MS.gene51865:CDS | 50.0% | |
| CCCATAGCCTTCAATCCTCT+TGG | - | chr7.4:21743732-21743751 | None:intergenic | 50.0% | |
| GATCGATACTACACGACGAG+GGG | + | chr7.4:21743202-21743221 | MS.gene51865:CDS | 50.0% | |
| GCCAAGAGGATTGAAGGCTA+TGG | + | chr7.4:21743728-21743747 | MS.gene51865:CDS | 50.0% | |
| GGAGTGGAGAATCATCGTTC+TGG | + | chr7.4:21742486-21742505 | MS.gene51865:CDS | 50.0% | |
| GTGTGAGGGTGAAAGATCCT+CGG | + | chr7.4:21742415-21742434 | MS.gene51865:CDS | 50.0% | |
| TCTTCTTGCAGTGGGGAAAC+AGG | + | chr7.4:21742379-21742398 | MS.gene51865:CDS | 50.0% | |
| TGGAACTATTCTACGACCGG+CGG | + | chr7.4:21743141-21743160 | MS.gene51865:CDS | 50.0% | |
| !! | AGTTGGTAAGTCCTGGAGCA+TGG | + | chr7.4:21743542-21743561 | MS.gene51865:intron | 50.0% |
| !! | GGAAGCGTTTGAGATGTGTG+AGG | + | chr7.4:21742400-21742419 | MS.gene51865:CDS | 50.0% |
| !!! | GCCCTCTTTTTGGGTCTTTG+AGG | - | chr7.4:21743367-21743386 | None:intergenic | 50.0% |
| CCCCACTGCAAGAAGAACTC+TGG | - | chr7.4:21742375-21742394 | None:intergenic | 55.0% | |
| GCAGAGGCCAAGAGGATTGA+AGG | + | chr7.4:21743722-21743741 | MS.gene51865:intron | 55.0% | |
| TCAGCAGAGGACACCGGTAA+AGG | + | chr7.4:21743226-21743245 | MS.gene51865:CDS | 55.0% | |
| TTTCTGTTATCTCCGGCCGC+CGG | - | chr7.4:21743160-21743179 | None:intergenic | 55.0% | |
| ACTATTCTACGACCGGCGGC+CGG | + | chr7.4:21743145-21743164 | MS.gene51865:CDS | 60.0% | |
| AGGGGGTCAGCAGAGGACAC+CGG | + | chr7.4:21743220-21743239 | MS.gene51865:CDS | 65.0% | |
| CACGACGAGGGGGTCAGCAG+AGG | + | chr7.4:21743213-21743232 | MS.gene51865:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21742327 | 21743776 | 21742327 | ID=MS.gene51865 |
| chr7.4 | mRNA | 21742327 | 21743776 | 21742327 | ID=MS.gene51865.t1;Parent=MS.gene51865 |
| chr7.4 | exon | 21742327 | 21742568 | 21742327 | ID=MS.gene51865.t1.exon1;Parent=MS.gene51865.t1 |
| chr7.4 | CDS | 21742327 | 21742568 | 21742327 | ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1 |
| chr7.4 | exon | 21743132 | 21743411 | 21743132 | ID=MS.gene51865.t1.exon2;Parent=MS.gene51865.t1 |
| chr7.4 | CDS | 21743132 | 21743411 | 21743132 | ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1 |
| chr7.4 | exon | 21743544 | 21743621 | 21743544 | ID=MS.gene51865.t1.exon3;Parent=MS.gene51865.t1 |
| chr7.4 | CDS | 21743544 | 21743621 | 21743544 | ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1 |
| chr7.4 | exon | 21743726 | 21743776 | 21743726 | ID=MS.gene51865.t1.exon4;Parent=MS.gene51865.t1 |
| chr7.4 | CDS | 21743726 | 21743776 | 21743726 | ID=cds.MS.gene51865.t1;Parent=MS.gene51865.t1 |
| Gene Sequence |
| Protein sequence |
