Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52444.t1 | QDC27833.1 | 100 | 405 | 0 | 0 | 1 | 405 | 1 | 405 | 1.50E-237 | 831.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52444.t1 | Q9FUJ1 | 61.0 | 421 | 148 | 4 | 1 | 405 | 1 | 421 | 4.5e-145 | 515.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52444.t1 | A0A4Y5UJA3 | 100.0 | 405 | 0 | 0 | 1 | 405 | 1 | 405 | 1.1e-237 | 831.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050577 | MS.gene52444 | 0.832427 | 9.51E-56 | -1.69E-46 |
| MS.gene051560 | MS.gene52444 | 0.983358 | 1.59E-157 | -1.69E-46 |
| MS.gene052164 | MS.gene52444 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene52444 | 0.825197 | 5.35E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene52444 | 0.832057 | 1.17E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene52444 | 0.822344 | 2.49E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene52444 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene055629 | MS.gene52444 | 0.827593 | 1.44E-54 | -1.69E-46 |
| MS.gene056040 | MS.gene52444 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene52444 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene05726 | MS.gene52444 | -0.811951 | 5.41E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene52444 | 0.812974 | 3.24E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene52444 | 0.811995 | 5.30E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene52444 | 0.852288 | 5.09E-61 | -1.69E-46 |
| MS.gene059223 | MS.gene52444 | -0.803238 | 3.83E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene52444 | 0.805086 | 1.58E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene52444 | 0.814865 | 1.24E-51 | -1.69E-46 |
| MS.gene060295 | MS.gene52444 | 0.803191 | 3.92E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene52444 | 0.82264 | 2.13E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene52444 | 0.812872 | 3.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52444.t1 | MTR_1g015410 | 98.272 | 405 | 7 | 0 | 1 | 405 | 1 | 405 | 0.0 | 827 |
| MS.gene52444.t1 | MTR_7g090920 | 45.387 | 401 | 194 | 9 | 18 | 405 | 49 | 437 | 1.38e-114 | 345 |
| MS.gene52444.t1 | MTR_3g036100 | 46.684 | 377 | 181 | 7 | 37 | 405 | 81 | 445 | 4.11e-114 | 344 |
| MS.gene52444.t1 | MTR_4g044110 | 45.358 | 377 | 187 | 6 | 37 | 405 | 57 | 422 | 8.80e-112 | 338 |
| MS.gene52444.t1 | MTR_3g112350 | 48.011 | 377 | 182 | 9 | 37 | 405 | 57 | 427 | 1.60e-106 | 324 |
| MS.gene52444.t1 | MTR_2g039410 | 43.147 | 394 | 194 | 9 | 36 | 405 | 53 | 440 | 3.64e-101 | 311 |
| MS.gene52444.t1 | MTR_4g126150 | 40.441 | 408 | 211 | 11 | 17 | 405 | 37 | 431 | 1.15e-98 | 304 |
| MS.gene52444.t1 | MTR_4g126160 | 43.342 | 383 | 194 | 12 | 35 | 405 | 52 | 423 | 1.88e-93 | 290 |
| MS.gene52444.t1 | MTR_2g039340 | 39.675 | 431 | 214 | 12 | 1 | 405 | 16 | 426 | 1.05e-90 | 283 |
| MS.gene52444.t1 | MTR_0005s0070 | 46.792 | 265 | 123 | 5 | 50 | 306 | 1 | 255 | 1.10e-79 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52444.t1 | AT5G21482 | 61.045 | 421 | 148 | 4 | 1 | 405 | 1 | 421 | 0.0 | 514 |
| MS.gene52444.t1 | AT2G41510 | 46.257 | 374 | 187 | 7 | 37 | 405 | 76 | 440 | 4.95e-114 | 340 |
| MS.gene52444.t1 | AT2G41510 | 46.381 | 373 | 186 | 7 | 38 | 405 | 77 | 440 | 1.20e-112 | 341 |
| MS.gene52444.t1 | AT2G41510 | 46.381 | 373 | 186 | 7 | 38 | 405 | 139 | 502 | 5.44e-112 | 342 |
| MS.gene52444.t1 | AT1G75450 | 47.792 | 385 | 186 | 11 | 29 | 405 | 44 | 421 | 2.53e-108 | 329 |
| MS.gene52444.t1 | AT3G63440 | 45.767 | 378 | 186 | 7 | 37 | 405 | 60 | 427 | 1.87e-107 | 327 |
| MS.gene52444.t1 | AT1G75450 | 47.668 | 386 | 186 | 12 | 29 | 405 | 40 | 418 | 1.19e-106 | 325 |
| MS.gene52444.t1 | AT5G56970 | 44.086 | 372 | 199 | 6 | 37 | 405 | 58 | 423 | 1.33e-100 | 305 |
| MS.gene52444.t1 | AT5G56970 | 44.086 | 372 | 199 | 6 | 37 | 405 | 58 | 423 | 4.79e-99 | 305 |
| MS.gene52444.t1 | AT4G29740 | 40.155 | 386 | 209 | 8 | 35 | 405 | 50 | 428 | 3.70e-86 | 268 |
| MS.gene52444.t1 | AT2G19500 | 40.267 | 375 | 208 | 8 | 35 | 405 | 43 | 405 | 3.89e-85 | 268 |
| MS.gene52444.t1 | AT4G29740 | 40.155 | 386 | 209 | 8 | 35 | 405 | 50 | 428 | 1.54e-84 | 267 |
| MS.gene52444.t1 | AT4G29740 | 44.490 | 245 | 122 | 3 | 35 | 266 | 50 | 293 | 3.39e-64 | 210 |
Find 133 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAACCGGGTTGAAAATT+TGG | 0.149145 | 1.4:+6707194 | None:intergenic |
| TCTTTACTAGCGATGGAATT+AGG | 0.152257 | 1.4:+6708141 | None:intergenic |
| CGCCATGGCTTGGCCGTTGA+TGG | 0.241138 | 1.4:+6707987 | None:intergenic |
| ATAATTTGAATTACCATATC+AGG | 0.263814 | 1.4:+6707571 | None:intergenic |
| ACGTTTCCGGTGGGGCATTA+TGG | 0.267117 | 1.4:-6707882 | MS.gene52444:CDS |
| TTTGCTTCACTTGGTGGTCT+TGG | 0.275872 | 1.4:-6707640 | MS.gene52444:CDS |
| CTTTACTAGCGATGGAATTA+GGG | 0.278545 | 1.4:+6708142 | None:intergenic |
| GTTCCACACGTCGACGTTTC+CGG | 0.291921 | 1.4:-6707895 | MS.gene52444:CDS |
| ATGCTAAAGCCAAAGGTATA+TGG | 0.292797 | 1.4:-6705364 | MS.gene52444:CDS |
| TACCTTGAACACTTCGTTCA+TGG | 0.302711 | 1.4:-6708228 | MS.gene52444:CDS |
| AGCTTGTTGAAGAACGATTC+TGG | 0.307035 | 1.4:+6707594 | None:intergenic |
| ACCACATCGGCGGTGGTGTA+AGG | 0.326905 | 1.4:+6708075 | None:intergenic |
| AACGGCAAACGTAACGGAAT+TGG | 0.333855 | 1.4:-6707725 | MS.gene52444:CDS |
| CGTTTCCGGTGGGGCATTAT+GGG | 0.338199 | 1.4:-6707881 | MS.gene52444:CDS |
| GTTTGTCTTCCTTCTTCAGC+TGG | 0.347023 | 1.4:-6707178 | MS.gene52444:CDS |
| GCGGAGTACGGCGAGGGGAG+TGG | 0.353548 | 1.4:+6708098 | None:intergenic |
| TCCGTTACGTTTGCCGTTTG+AGG | 0.363428 | 1.4:+6707730 | None:intergenic |
| CTTGGTGGTCTTGGTCAGTT+TGG | 0.364537 | 1.4:-6707631 | MS.gene52444:CDS |
| TAATCAAAACCGTCACCTTC+TGG | 0.374704 | 1.4:+6707289 | None:intergenic |
| ACGGAATTGGAAGTTGTTAC+TGG | 0.376042 | 1.4:-6707712 | MS.gene52444:CDS |
| TCTTCAACAAGCTCCTGATA+TGG | 0.379699 | 1.4:-6707584 | MS.gene52444:intron |
| AAAATCAGCAATGTCGGTCT+TGG | 0.394703 | 1.4:+6705307 | None:intergenic |
| CGCCGCCACTGTTAAATTTG+TGG | 0.405726 | 1.4:+6708026 | None:intergenic |
| GTCCTTTCTCCGCCATGGCT+TGG | 0.407600 | 1.4:+6707977 | None:intergenic |
| AAGTGGATAGATTGCTTGGA+GGG | 0.409011 | 1.4:-6705469 | MS.gene52444:CDS |
| ACTTACTTGCTTCGCAATAG+TGG | 0.415161 | 1.4:+6705224 | None:intergenic |
| AGGTCGTGGACGGATTATCT+TGG | 0.416052 | 1.4:-6707814 | MS.gene52444:CDS |
| AGAGATGAAACGTCGTCGTT+TGG | 0.424313 | 1.4:+6708186 | None:intergenic |
| TTCCATGAACGAAGTGTTCA+AGG | 0.426707 | 1.4:+6708226 | None:intergenic |
| TTGGAAGTTGTTACTGGTAA+AGG | 0.428929 | 1.4:-6707706 | MS.gene52444:CDS |
| TCTTCCTTCTTCAGCTGGAC+CGG | 0.429397 | 1.4:-6707173 | MS.gene52444:CDS |
| GGTGATTTACTCGGAATTTG+AGG | 0.430629 | 1.4:-6707347 | MS.gene52444:CDS |
| CGATGGAATTAGGGGCGAAA+TGG | 0.432931 | 1.4:+6708151 | None:intergenic |
| AGGTGCATCCCATATACCTT+TGG | 0.435349 | 1.4:+6705355 | None:intergenic |
| AGTGGTCAGACTTTCCGTTA+TGG | 0.435886 | 1.4:-6707754 | MS.gene52444:CDS |
| GCTGAAGAAGGAAGACAAAC+CGG | 0.448502 | 1.4:+6707181 | None:intergenic |
| AATTATAGGTGAGGTGGATG+AGG | 0.449429 | 1.4:-6707369 | MS.gene52444:intron |
| TTCGAACCCATCGGAATTGT+GGG | 0.454639 | 1.4:+6707217 | None:intergenic |
| GTTCGAACCCATCGGAATTG+TGG | 0.455887 | 1.4:+6707216 | None:intergenic |
| TAGAAAGTGGATAGATTGCT+TGG | 0.458245 | 1.4:-6705473 | MS.gene52444:CDS |
| TTAAGCTTGTTCCGAGGTCG+TGG | 0.462870 | 1.4:-6707828 | MS.gene52444:CDS |
| TGCTAAAGCCAAAGGTATAT+GGG | 0.464646 | 1.4:-6705363 | MS.gene52444:CDS |
| GGTCGTGGACGGATTATCTT+GGG | 0.467250 | 1.4:-6707813 | MS.gene52444:CDS |
| GGGCGAAATGGAAAGAAGAT+TGG | 0.474103 | 1.4:+6708163 | None:intergenic |
| TACTAAAGATGCAGAGTGGC+TGG | 0.476282 | 1.4:-6707320 | MS.gene52444:CDS |
| GACCGCCAACCCCATGTTTG+AGG | 0.476994 | 1.4:+6705261 | None:intergenic |
| GGCCAAGCCATGGCGGAGAA+AGG | 0.478685 | 1.4:-6707979 | MS.gene52444:CDS |
| CAATAGTGGGTACACTAGAA+TGG | 0.480738 | 1.4:+6705238 | None:intergenic |
| AGCTCTAAGCAATAGAGAAC+CGG | 0.488364 | 1.4:+6707154 | None:intergenic |
| ATCCTCAAACATGGGGTTGG+CGG | 0.489439 | 1.4:-6705263 | MS.gene52444:CDS |
| GGAGGGTTGAGATTTGTTGA+GGG | 0.491332 | 1.4:-6705452 | MS.gene52444:CDS |
| GATTATCTTGGGTTGACGGT+GGG | 0.491823 | 1.4:-6707802 | MS.gene52444:CDS |
| TGTTGAGGGAATAAAATTTG+AGG | 0.496430 | 1.4:-6705438 | MS.gene52444:CDS |
| GATGAAACGTCGTCGTTTGG+TGG | 0.497366 | 1.4:+6708189 | None:intergenic |
| AATAGTGGGTACACTAGAAT+GGG | 0.499246 | 1.4:+6705239 | None:intergenic |
| TCCATCGCTAGTAAAGACTT+TGG | 0.502870 | 1.4:-6708135 | MS.gene52444:CDS |
| TCGATCTTCTGAAGTTAATA+CGG | 0.504348 | 1.4:-6707107 | MS.gene52444:intron |
| CCACATCGGCGGTGGTGTAA+GGG | 0.506838 | 1.4:+6708076 | None:intergenic |
| GCCAAAGTCTTTACTAGCGA+TGG | 0.507471 | 1.4:+6708134 | None:intergenic |
| TATCTTGGGTTGACGGTGGG+TGG | 0.508422 | 1.4:-6707799 | MS.gene52444:CDS |
| ACAGTGGCGGCGCGTGGTAA+CGG | 0.517231 | 1.4:-6708015 | MS.gene52444:CDS |
| TTGCCGTTTGAGGACCATAA+CGG | 0.518469 | 1.4:+6707740 | None:intergenic |
| GCTTGTTCCGAGGTCGTGGA+CGG | 0.521292 | 1.4:-6707824 | MS.gene52444:CDS |
| GGTGGTGTAAGGGCGGAGTA+CGG | 0.523423 | 1.4:+6708086 | None:intergenic |
| TCAAGAAAATCCTCAAACAT+GGG | 0.525014 | 1.4:-6705271 | MS.gene52444:CDS |
| GTGATTAATTATAGGTGAGG+TGG | 0.525879 | 1.4:-6707375 | MS.gene52444:intron |
| GACAAGTCCTTTCTCCGCCA+TGG | 0.527704 | 1.4:+6707972 | None:intergenic |
| AACAATGACGACCCTTGTAA+TGG | 0.528629 | 1.4:-6707244 | MS.gene52444:CDS |
| TTTCCGTTATGGTCCTCAAA+CGG | 0.538238 | 1.4:-6707743 | MS.gene52444:CDS |
| TCCTCAAACGGCAAACGTAA+CGG | 0.539282 | 1.4:-6707731 | MS.gene52444:CDS |
| GTAAGGGCGGAGTACGGCGA+GGG | 0.539751 | 1.4:+6708092 | None:intergenic |
| ATTGTGGGCCAACCATTACA+AGG | 0.542464 | 1.4:+6707232 | None:intergenic |
| GACGGATTATCTTGGGTTGA+CGG | 0.542938 | 1.4:-6707806 | MS.gene52444:CDS |
| CGCCACTGTTAAATTTGTGG+TGG | 0.542938 | 1.4:+6708029 | None:intergenic |
| ACGTGTAAAGCGTGTGGAAG+AGG | 0.543242 | 1.4:-6705387 | MS.gene52444:CDS |
| CTCCATCAACGGCCAAGCCA+TGG | 0.544156 | 1.4:-6707989 | MS.gene52444:CDS |
| ATTATAGGTGAGGTGGATGA+GGG | 0.546580 | 1.4:-6707368 | MS.gene52444:intron |
| TGGTTGGCCCACAATTCCGA+TGG | 0.547575 | 1.4:-6707224 | MS.gene52444:CDS |
| CGACATGCGAGCCACGGCGG+AGG | 0.549400 | 1.4:-6707947 | MS.gene52444:CDS |
| CTTACTTGCTTCGCAATAGT+GGG | 0.549432 | 1.4:+6705225 | None:intergenic |
| AGATAATCCGTCCACGACCT+CGG | 0.550163 | 1.4:+6707817 | None:intergenic |
| GAGTACGGCGAGGGGAGTGG+AGG | 0.555436 | 1.4:+6708101 | None:intergenic |
| TGGAGGGTTGAGATTTGTTG+AGG | 0.555521 | 1.4:-6705453 | MS.gene52444:CDS |
| CACACGTCGACGTTTCCGGT+GGG | 0.555761 | 1.4:-6707891 | MS.gene52444:CDS |
| GGATTATCTTGGGTTGACGG+TGG | 0.555995 | 1.4:-6707803 | MS.gene52444:CDS |
| AGAACCGGTCCAGCTGAAGA+AGG | 0.557947 | 1.4:+6707169 | None:intergenic |
| AAAATTTGGTTCGAACCCAT+CGG | 0.558165 | 1.4:+6707208 | None:intergenic |
| CCGCCGTGGCTCGCATGTCG+AGG | 0.560775 | 1.4:+6707950 | None:intergenic |
| CCCTTACACCACCGCCGATG+TGG | 0.562433 | 1.4:-6708076 | MS.gene52444:CDS |
| CTGAAGAAGGAAGACAAACC+GGG | 0.562836 | 1.4:+6707182 | None:intergenic |
| AAAGTGGATAGATTGCTTGG+AGG | 0.565909 | 1.4:-6705470 | MS.gene52444:CDS |
| ATGACGACCCTTGTAATGGT+TGG | 0.566251 | 1.4:-6707240 | MS.gene52444:CDS |
| TCGACGTAGAGAAGTTGAAA+AGG | 0.566784 | 1.4:+6707922 | None:intergenic |
| ATCGCTAGTAAAGACTTTGG+CGG | 0.568106 | 1.4:-6708132 | MS.gene52444:CDS |
| AAAATCCTCAAACATGGGGT+TGG | 0.568437 | 1.4:-6705266 | MS.gene52444:CDS |
| TTTCAACTTCTCTACGTCGA+CGG | 0.568492 | 1.4:-6707919 | MS.gene52444:CDS |
| CCACACGTCGACGTTTCCGG+TGG | 0.571833 | 1.4:-6707892 | MS.gene52444:CDS |
| CACCACAAATTTAACAGTGG+CGG | 0.573395 | 1.4:-6708028 | MS.gene52444:CDS |
| TTCAAGAAAATCCTCAAACA+TGG | 0.574533 | 1.4:-6705272 | MS.gene52444:CDS |
| AATTTAACAGTGGCGGCGCG+TGG | 0.576208 | 1.4:-6708021 | MS.gene52444:CDS |
| ACGATCAAAATCAGCAATGT+CGG | 0.577104 | 1.4:+6705301 | None:intergenic |
| GACACAAACATGTTCAACCA+TGG | 0.577551 | 1.4:+6705329 | None:intergenic |
| TTCTTCCCATAATGCCCCAC+CGG | 0.584444 | 1.4:+6707876 | None:intergenic |
| GTGGATGAGGGTGATTTACT+CGG | 0.585431 | 1.4:-6707356 | MS.gene52444:CDS |
| TTATCTAACGCCGGTGTCAG+TGG | 0.591550 | 1.4:-6707772 | MS.gene52444:CDS |
| CCACCGGAAACGTCGACGTG+TGG | 0.593175 | 1.4:+6707892 | None:intergenic |
| AACATGTTCAACCATGGGTG+AGG | 0.595226 | 1.4:+6705335 | None:intergenic |
| TGAGGATGATGTGAAGTACA+TGG | 0.595819 | 1.4:-6705420 | MS.gene52444:CDS |
| ACACGTCGACGTTTCCGGTG+GGG | 0.596713 | 1.4:-6707890 | MS.gene52444:CDS |
| TATGGGATGCACCTCACCCA+TGG | 0.601998 | 1.4:-6705346 | MS.gene52444:CDS |
| TAAGGGCGGAGTACGGCGAG+GGG | 0.607594 | 1.4:+6708093 | None:intergenic |
| ACACAAACATGTTCAACCAT+GGG | 0.614296 | 1.4:+6705330 | None:intergenic |
| GAAAGTCTGACCACTGACAC+CGG | 0.615663 | 1.4:+6707762 | None:intergenic |
| TGTCCTCGACATGCGAGCCA+CGG | 0.617094 | 1.4:-6707953 | MS.gene52444:CDS |
| GGTAACGGTCACTCCATCAA+CGG | 0.617798 | 1.4:-6708000 | MS.gene52444:CDS |
| TGTAAGGGCGGAGTACGGCG+AGG | 0.621289 | 1.4:+6708091 | None:intergenic |
| GGTTGGCCCACAATTCCGAT+GGG | 0.621310 | 1.4:-6707223 | MS.gene52444:CDS |
| GAAGAGGATGCTAAAGCCAA+AGG | 0.631830 | 1.4:-6705371 | MS.gene52444:CDS |
| TTTGCTACGTGTAAAGCGTG+TGG | 0.637512 | 1.4:-6705393 | MS.gene52444:CDS |
| CAAGAAAATCCTCAAACATG+GGG | 0.637785 | 1.4:-6705270 | MS.gene52444:CDS |
| TTGAAAAGGCTCCTCCGCCG+TGG | 0.646401 | 1.4:+6707936 | None:intergenic |
| CATCGGCGGTGGTGTAAGGG+CGG | 0.651775 | 1.4:+6708079 | None:intergenic |
| TTTACTAGCGATGGAATTAG+GGG | 0.652593 | 1.4:+6708143 | None:intergenic |
| GGTGGAACTTTATCTAACGC+CGG | 0.664301 | 1.4:-6707781 | MS.gene52444:CDS |
| CATCAACGGCCAAGCCATGG+CGG | 0.679836 | 1.4:-6707986 | MS.gene52444:CDS |
| CCTCGACATGCGAGCCACGG+CGG | 0.681570 | 1.4:-6707950 | MS.gene52444:CDS |
| TTACGTGGAAGGGTTCGTTG+TGG | 0.686031 | 1.4:-6707269 | MS.gene52444:CDS |
| TGGCTGGTGACACTACCAGA+AGG | 0.701936 | 1.4:-6707304 | MS.gene52444:CDS |
| ATTAACTTCAGAAGATCGAG+CGG | 0.709501 | 1.4:+6707111 | None:intergenic |
| GTGACACTACCAGAAGGTGA+CGG | 0.718693 | 1.4:-6707298 | MS.gene52444:CDS |
| TTGTGGGCCAACCATTACAA+GGG | 0.722239 | 1.4:+6707233 | None:intergenic |
| AACCACCACAAATTTAACAG+TGG | 0.724117 | 1.4:-6708031 | MS.gene52444:CDS |
| ACTATACTAAAGATGCAGAG+TGG | 0.735948 | 1.4:-6707324 | MS.gene52444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTAAAAAAAACAAA+TGG | + | chr1.4:6706419-6706438 | None:intergenic | 10.0% |
| !! | AAAGATTAAAAAAAACAAAT+GGG | + | chr1.4:6706418-6706437 | None:intergenic | 10.0% |
| !! | CTTAACAAAATTAATAAATA+AGG | - | chr1.4:6706609-6706628 | MS.gene52444:intron | 10.0% |
| !!! | TTTTCTAAAAAAAAAAATCA+TGG | + | chr1.4:6707299-6707318 | None:intergenic | 10.0% |
| !!! | TTTTCTTTTATAATATATTC+AGG | + | chr1.4:6706569-6706588 | None:intergenic | 10.0% |
| !!! | AAATCTTTGTTATTATTGTA+TGG | - | chr1.4:6706016-6706035 | MS.gene52444:intron | 15.0% |
| !!! | ATTTTTAACTTCAACTTAAT+TGG | + | chr1.4:6707332-6707351 | None:intergenic | 15.0% |
| !!! | TTGATTTTGATTTTGATTTT+GGG | - | chr1.4:6706059-6706078 | MS.gene52444:intron | 15.0% |
| !!! | TTTGATTTTGATTTTGATTT+TGG | - | chr1.4:6706058-6706077 | MS.gene52444:intron | 15.0% |
| !! | AAAAATGAAACCATTATTAG+TGG | - | chr1.4:6707346-6707365 | MS.gene52444:CDS | 20.0% |
| !! | ATAATTTGAATTACCATATC+AGG | + | chr1.4:6705895-6705914 | None:intergenic | 20.0% |
| !! | ATTGAATTTGAATTCCTTTA+TGG | - | chr1.4:6707750-6707769 | MS.gene52444:CDS | 20.0% |
| !!! | ATTTTAAGCAAAAGTAATGT+GGG | + | chr1.4:6706874-6706893 | None:intergenic | 20.0% |
| !!! | GTATATTTGACTTTTTACTT+GGG | + | chr1.4:6707395-6707414 | None:intergenic | 20.0% |
| !!! | TATTTTAAGCAAAAGTAATG+TGG | + | chr1.4:6706875-6706894 | None:intergenic | 20.0% |
| !!! | TGATTTTGATTTTGATTTTG+GGG | - | chr1.4:6706060-6706079 | MS.gene52444:intron | 20.0% |
| !!! | TTTGAATTTTTTTTTGCCAA+TGG | - | chr1.4:6707569-6707588 | MS.gene52444:intron | 20.0% |
| ! | ACTAATCAAACATAATATGC+CGG | + | chr1.4:6707135-6707154 | None:intergenic | 25.0% |
| ! | AGTGGTAGAAAAACAAATAT+AGG | - | chr1.4:6707364-6707383 | MS.gene52444:CDS | 25.0% |
| ! | CCAATAACATTAAAAAACCA+AGG | + | chr1.4:6706937-6706956 | None:intergenic | 25.0% |
| ! | CTTTATGGTTAAGGTTAAAA+TGG | - | chr1.4:6707765-6707784 | MS.gene52444:CDS | 25.0% |
| ! | GTAGAAAAACAAATATAGGT+GGG | - | chr1.4:6707368-6707387 | MS.gene52444:intron | 25.0% |
| ! | TACGGATATTAGTAATAGTT+TGG | + | chr1.4:6707166-6707185 | None:intergenic | 25.0% |
| ! | TACTAAAAAGCTTGTATTGT+TGG | - | chr1.4:6707657-6707676 | MS.gene52444:CDS | 25.0% |
| ! | TTTGAATTCCTTTATGGTTA+AGG | - | chr1.4:6707756-6707775 | MS.gene52444:CDS | 25.0% |
| !! | CTATTTTATGCTAATAGCTA+AGG | + | chr1.4:6707726-6707745 | None:intergenic | 25.0% |
| !! | TGTTTTTCTACCACTAATAA+TGG | + | chr1.4:6707359-6707378 | None:intergenic | 25.0% |
| !! | TTTTCAATTGCAATTTACCT+TGG | - | chr1.4:6706917-6706936 | MS.gene52444:intron | 25.0% |
| !! | TTTTGTCTTGTCTAGTATAT+GGG | - | chr1.4:6706658-6706677 | MS.gene52444:intron | 25.0% |
| !!! | AATTTTTTTTTGCCAATGGT+TGG | - | chr1.4:6707573-6707592 | MS.gene52444:intron | 25.0% |
| !!! | ATTTTGGGGTGATTAATTAT+AGG | - | chr1.4:6706080-6706099 | MS.gene52444:intron | 25.0% |
| !!! | ATTTTTTTTTGCCAATGGTT+GGG | - | chr1.4:6707574-6707593 | MS.gene52444:intron | 25.0% |
| !!! | CATTTTAACCTTAACCATAA+AGG | + | chr1.4:6707767-6707786 | None:intergenic | 25.0% |
| !!! | CCTTGGTTTTTTAATGTTAT+TGG | - | chr1.4:6706934-6706953 | MS.gene52444:intron | 25.0% |
| !!! | CGTATATTTGACTTTTTACT+TGG | + | chr1.4:6707396-6707415 | None:intergenic | 25.0% |
| !!! | GGTTTTTTAATGTTATTGGT+GGG | - | chr1.4:6706938-6706957 | MS.gene52444:intron | 25.0% |
| !!! | TGGTTTTTTAATGTTATTGG+TGG | - | chr1.4:6706937-6706956 | MS.gene52444:intron | 25.0% |
| AAAAAAGTGATGTGTCAATG+TGG | - | chr1.4:6707038-6707057 | MS.gene52444:intron | 30.0% | |
| AAAAAATTTCTCCACAATGG+GGG | + | chr1.4:6706798-6706817 | None:intergenic | 30.0% | |
| AAAAAGTGATGTGTCAATGT+GGG | - | chr1.4:6707039-6707058 | MS.gene52444:intron | 30.0% | |
| AAGACAAAAGAACACGAAAA+TGG | + | chr1.4:6706647-6706666 | None:intergenic | 30.0% | |
| ACAAAGATTTGACATATGTC+CGG | + | chr1.4:6706006-6706025 | None:intergenic | 30.0% | |
| AGATAACGTCACATATCATT+TGG | - | chr1.4:6707497-6707516 | MS.gene52444:intron | 30.0% | |
| ATCTCAATAATCAGAGCAAA+TGG | + | chr1.4:6707813-6707832 | None:intergenic | 30.0% | |
| CAAAAAATTTCTCCACAATG+GGG | + | chr1.4:6706799-6706818 | None:intergenic | 30.0% | |
| CAAGTAAGTTTAAATGAGTC+CGG | - | chr1.4:6705984-6706003 | MS.gene52444:intron | 30.0% | |
| CCAAAAAATTTCTCCACAAT+GGG | + | chr1.4:6706800-6706819 | None:intergenic | 30.0% | |
| CCACTTTCTACAATATATCA+AGG | + | chr1.4:6707980-6707999 | None:intergenic | 30.0% | |
| CCTTGATATATTGTAGAAAG+TGG | - | chr1.4:6707977-6707996 | MS.gene52444:CDS | 30.0% | |
| GATAACGTCACATATCATTT+GGG | - | chr1.4:6707498-6707517 | MS.gene52444:intron | 30.0% | |
| GGTAGAAAAACAAATATAGG+TGG | - | chr1.4:6707367-6707386 | MS.gene52444:intron | 30.0% | |
| TAATGTGTCAGAAAATCCAA+TGG | + | chr1.4:6707632-6707651 | None:intergenic | 30.0% | |
| TATCATTTGGGTATAAGTGT+TGG | - | chr1.4:6707510-6707529 | MS.gene52444:intron | 30.0% | |
| TCAAGAAAATCCTCAAACAT+GGG | - | chr1.4:6708192-6708211 | MS.gene52444:CDS | 30.0% | |
| TGTTGAGGGAATAAAATTTG+AGG | - | chr1.4:6708025-6708044 | MS.gene52444:CDS | 30.0% | |
| TTCAAGAAAATCCTCAAACA+TGG | - | chr1.4:6708191-6708210 | MS.gene52444:CDS | 30.0% | |
| TTCTTTACAATAAACCCGAA+CGG | + | chr1.4:6706470-6706489 | None:intergenic | 30.0% | |
| ! | CTTTTGTCTTGTCTAGTATA+TGG | - | chr1.4:6706657-6706676 | MS.gene52444:intron | 30.0% |
| ! | GTATGGAGTAGTTTATGTTT+TGG | - | chr1.4:6706033-6706052 | MS.gene52444:intron | 30.0% |
| ! | TAATATTGATTGACCTAGCT+TGG | - | chr1.4:6707273-6707292 | MS.gene52444:CDS | 30.0% |
| !! | TCGATCTTCTGAAGTTAATA+CGG | - | chr1.4:6706356-6706375 | MS.gene52444:intron | 30.0% |
| !!! | CATTGTGGAGAAATTTTTTG+GGG | - | chr1.4:6706799-6706818 | MS.gene52444:intron | 30.0% |
| !!! | CCATTGTGGAGAAATTTTTT+GGG | - | chr1.4:6706798-6706817 | MS.gene52444:intron | 30.0% |
| !!! | TCCAGAAAATGATGGTTTTT+TGG | + | chr1.4:6707873-6707892 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGCCAATGGTTG+GGG | - | chr1.4:6707575-6707594 | MS.gene52444:intron | 30.0% |
| AAAAAAATCATGGCCAAGCT+AGG | + | chr1.4:6707289-6707308 | None:intergenic | 35.0% | |
| AACCACCACAAATTTAACAG+TGG | - | chr1.4:6705432-6705451 | MS.gene52444:CDS | 35.0% | |
| ACACAAACATGTTCAACCAT+GGG | + | chr1.4:6708136-6708155 | None:intergenic | 35.0% | |
| ACATGTACGAAGTTGAGATA+TGG | - | chr1.4:6707430-6707449 | MS.gene52444:intron | 35.0% | |
| ACGACACTAACATAGACATA+CGG | + | chr1.4:6707184-6707203 | None:intergenic | 35.0% | |
| ACGATCAAAATCAGCAATGT+CGG | + | chr1.4:6708165-6708184 | None:intergenic | 35.0% | |
| ACTATACTAAAGATGCAGAG+TGG | - | chr1.4:6706139-6706158 | MS.gene52444:intron | 35.0% | |
| ATGTGTTAGACCATCCAAAA+TGG | - | chr1.4:6706733-6706752 | MS.gene52444:intron | 35.0% | |
| ATTAACTTCAGAAGATCGAG+CGG | + | chr1.4:6706355-6706374 | None:intergenic | 35.0% | |
| CAAGAAAATCCTCAAACATG+GGG | - | chr1.4:6708193-6708212 | MS.gene52444:CDS | 35.0% | |
| CCCAAAAAATTTCTCCACAA+TGG | + | chr1.4:6706801-6706820 | None:intergenic | 35.0% | |
| CTACAGATTCCAGAAAATGA+TGG | + | chr1.4:6707881-6707900 | None:intergenic | 35.0% | |
| CTAGTATATGGGAATCGTAA+AGG | - | chr1.4:6706669-6706688 | MS.gene52444:intron | 35.0% | |
| CTCCAACAAAAGGTCTAAAT+AGG | + | chr1.4:6706965-6706984 | None:intergenic | 35.0% | |
| CTTTACTAGCGATGGAATTA+GGG | + | chr1.4:6705324-6705343 | None:intergenic | 35.0% | |
| GAAACTAAGAACATCCACAA+TGG | + | chr1.4:6707095-6707114 | None:intergenic | 35.0% | |
| GTAGTGGTTGAGTACATATT+AGG | - | chr1.4:6706995-6707014 | MS.gene52444:intron | 35.0% | |
| GTGATTAATTATAGGTGAGG+TGG | - | chr1.4:6706088-6706107 | MS.gene52444:intron | 35.0% | |
| TAGAAAGTGGATAGATTGCT+TGG | - | chr1.4:6707990-6708009 | MS.gene52444:CDS | 35.0% | |
| TATGTACTCAACCACTACAA+TGG | + | chr1.4:6706993-6707012 | None:intergenic | 35.0% | |
| TCTTTACTAGCGATGGAATT+AGG | + | chr1.4:6705325-6705344 | None:intergenic | 35.0% | |
| TTAAGACCTCAATGCTTAAG+TGG | - | chr1.4:6706846-6706865 | MS.gene52444:intron | 35.0% | |
| TTAGACCATCCAAAATGGTA+GGG | - | chr1.4:6706738-6706757 | MS.gene52444:intron | 35.0% | |
| TTGGAAGTTGTTACTGGTAA+AGG | - | chr1.4:6705757-6705776 | MS.gene52444:intron | 35.0% | |
| TTTACTAGCGATGGAATTAG+GGG | + | chr1.4:6705323-6705342 | None:intergenic | 35.0% | |
| ! | AAAATTTGGTTCGAACCCAT+CGG | + | chr1.4:6706258-6706277 | None:intergenic | 35.0% |
| ! | ATGCTAAAGCCAAAGGTATA+TGG | - | chr1.4:6708099-6708118 | MS.gene52444:CDS | 35.0% |
| ! | CTATTTAGACCTTTTGTTGG+AGG | - | chr1.4:6706963-6706982 | MS.gene52444:intron | 35.0% |
| ! | GCAAAGTACAGTGTCTTATT+CGG | + | chr1.4:6707693-6707712 | None:intergenic | 35.0% |
| ! | GCCAAAAAACCATCATTTTC+TGG | - | chr1.4:6707869-6707888 | MS.gene52444:CDS | 35.0% |
| ! | GGTCTTAACTATTTAAGACC+CGG | - | chr1.4:6706759-6706778 | MS.gene52444:intron | 35.0% |
| ! | GTCCTATTTAGACCTTTTGT+TGG | - | chr1.4:6706960-6706979 | MS.gene52444:intron | 35.0% |
| ! | GTTTAAGACCTCAAAGTTGA+GGG | - | chr1.4:6707066-6707085 | MS.gene52444:intron | 35.0% |
| ! | TAGTTAAGACCCTACCATTT+TGG | + | chr1.4:6706750-6706769 | None:intergenic | 35.0% |
| ! | TCCGAAATTTTACATGACAC+CGG | - | chr1.4:6707113-6707132 | MS.gene52444:CDS | 35.0% |
| ! | TGCTAAAGCCAAAGGTATAT+GGG | - | chr1.4:6708100-6708119 | MS.gene52444:CDS | 35.0% |
| ! | TTCGAACCAAATTTTCAACC+CGG | - | chr1.4:6706263-6706282 | MS.gene52444:intron | 35.0% |
| ! | TTTTACGGCTTTTACCACAT+CGG | + | chr1.4:6705404-6705423 | None:intergenic | 35.0% |
| !! | AATAGTGGGTACACTAGAAT+GGG | + | chr1.4:6708227-6708246 | None:intergenic | 35.0% |
| !! | CTCAACTTTGAGGTCTTAAA+CGG | + | chr1.4:6707067-6707086 | None:intergenic | 35.0% |
| !! | TCAACTTTGAGGTCTTAAAC+GGG | + | chr1.4:6707066-6707085 | None:intergenic | 35.0% |
| !!! | CCCATTGTGGAGAAATTTTT+TGG | - | chr1.4:6706797-6706816 | MS.gene52444:intron | 35.0% |
| !!! | GATGGTTTTTTGGCCATTTA+CGG | + | chr1.4:6707863-6707882 | None:intergenic | 35.0% |
| !!! | TTGGGTATAAGTGTTGGTTT+TGG | - | chr1.4:6707516-6707535 | MS.gene52444:intron | 35.0% |
| !!! | TTTTTTTTGCCAATGGTTGG+GGG | - | chr1.4:6707576-6707595 | MS.gene52444:intron | 35.0% |
| AAAATCAGCAATGTCGGTCT+TGG | + | chr1.4:6708159-6708178 | None:intergenic | 40.0% | |
| AAAATCCTCAAACATGGGGT+TGG | - | chr1.4:6708197-6708216 | MS.gene52444:CDS | 40.0% | |
| AAAGTGGATAGATTGCTTGG+AGG | - | chr1.4:6707993-6708012 | MS.gene52444:CDS | 40.0% | |
| AACAATGACGACCCTTGTAA+TGG | - | chr1.4:6706219-6706238 | MS.gene52444:intron | 40.0% | |
| AAGTGGATAGATTGCTTGGA+GGG | - | chr1.4:6707994-6708013 | MS.gene52444:CDS | 40.0% | |
| AATGGAGATCCTCCAACAAA+AGG | + | chr1.4:6706975-6706994 | None:intergenic | 40.0% | |
| AATTATAGGTGAGGTGGATG+AGG | - | chr1.4:6706094-6706113 | MS.gene52444:intron | 40.0% | |
| ACGAAGTTGAGATATGGAAG+AGG | - | chr1.4:6707436-6707455 | MS.gene52444:intron | 40.0% | |
| ACGGAATTGGAAGTTGTTAC+TGG | - | chr1.4:6705751-6705770 | MS.gene52444:intron | 40.0% | |
| ATCGCTAGTAAAGACTTTGG+CGG | - | chr1.4:6705331-6705350 | MS.gene52444:CDS | 40.0% | |
| ATTATAGGTGAGGTGGATGA+GGG | - | chr1.4:6706095-6706114 | MS.gene52444:intron | 40.0% | |
| CAATGACACAATATTGACCC+TGG | - | chr1.4:6707231-6707250 | MS.gene52444:CDS | 40.0% | |
| CACCACAAATTTAACAGTGG+CGG | - | chr1.4:6705435-6705454 | MS.gene52444:CDS | 40.0% | |
| GACACAAACATGTTCAACCA+TGG | + | chr1.4:6708137-6708156 | None:intergenic | 40.0% | |
| GGGGTGATTAATTATAGGTG+AGG | - | chr1.4:6706085-6706104 | MS.gene52444:intron | 40.0% | |
| GGTCGTAATGTATCTTCCAT+TGG | - | chr1.4:6707613-6707632 | MS.gene52444:CDS | 40.0% | |
| GGTGATTTACTCGGAATTTG+AGG | - | chr1.4:6706116-6706135 | MS.gene52444:intron | 40.0% | |
| GTTAGACCATCCAAAATGGT+AGG | - | chr1.4:6706737-6706756 | MS.gene52444:intron | 40.0% | |
| TAATCAAAACCGTCACCTTC+TGG | + | chr1.4:6706177-6706196 | None:intergenic | 40.0% | |
| TACCTTGAACACTTCGTTCA+TGG | - | chr1.4:6705235-6705254 | MS.gene52444:CDS | 40.0% | |
| TCCATCGCTAGTAAAGACTT+TGG | - | chr1.4:6705328-6705347 | MS.gene52444:CDS | 40.0% | |
| TCGACGTAGAGAAGTTGAAA+AGG | + | chr1.4:6705544-6705563 | None:intergenic | 40.0% | |
| TCTCAACTTCGTACATGTGT+AGG | + | chr1.4:6707428-6707447 | None:intergenic | 40.0% | |
| TCTTCAACAAGCTCCTGATA+TGG | - | chr1.4:6705879-6705898 | MS.gene52444:intron | 40.0% | |
| TGAGGATGATGTGAAGTACA+TGG | - | chr1.4:6708043-6708062 | MS.gene52444:CDS | 40.0% | |
| TTTCAACTTCTCTACGTCGA+CGG | - | chr1.4:6705544-6705563 | MS.gene52444:intron | 40.0% | |
| TTTCCGTTATGGTCCTCAAA+CGG | - | chr1.4:6705720-6705739 | MS.gene52444:intron | 40.0% | |
| ! | CGTTTAAGACCTCAAAGTTG+AGG | - | chr1.4:6707065-6707084 | MS.gene52444:intron | 40.0% |
| ! | GACAAACCGGGTTGAAAATT+TGG | + | chr1.4:6706272-6706291 | None:intergenic | 40.0% |
| ! | TAAGACCCTACCATTTTGGA+TGG | + | chr1.4:6706746-6706765 | None:intergenic | 40.0% |
| ! | TTCCATGAACGAAGTGTTCA+AGG | + | chr1.4:6705240-6705259 | None:intergenic | 40.0% |
| ! | TTGAGATCTTGCTGACGTTT+TGG | - | chr1.4:6707826-6707845 | MS.gene52444:CDS | 40.0% |
| ! | TTTAAGACCCGGTACCTAAT+AGG | - | chr1.4:6706770-6706789 | MS.gene52444:intron | 40.0% |
| !! | AGCTCTAAGCAATAGAGAAC+CGG | + | chr1.4:6706312-6706331 | None:intergenic | 40.0% |
| !! | AGCTTGTTGAAGAACGATTC+TGG | + | chr1.4:6705872-6705891 | None:intergenic | 40.0% |
| !! | CAATAGTGGGTACACTAGAA+TGG | + | chr1.4:6708228-6708247 | None:intergenic | 40.0% |
| !! | CGAATTTTAAGCTTGTTCCG+AGG | - | chr1.4:6705629-6705648 | MS.gene52444:intron | 40.0% |
| !! | GCCGGTGTCATGTAAAATTT+CGG | + | chr1.4:6707117-6707136 | None:intergenic | 40.0% |
| !!! | ACGGTTTTGATTACGTGGAA+GGG | - | chr1.4:6706184-6706203 | MS.gene52444:intron | 40.0% |
| !!! | CTCTTTTTTGCTTCACTTGG+TGG | - | chr1.4:6705817-6705836 | MS.gene52444:intron | 40.0% |
| !!! | GAGCTCTTTTTTGCTTCACT+TGG | - | chr1.4:6705814-6705833 | MS.gene52444:intron | 40.0% |
| AAAGTTGAGGGTCTCCATTG+TGG | - | chr1.4:6707078-6707097 | MS.gene52444:intron | 45.0% | |
| AACATGTTCAACCATGGGTG+AGG | + | chr1.4:6708131-6708150 | None:intergenic | 45.0% | |
| AATGGAGACCCTCAACTTTG+AGG | + | chr1.4:6707077-6707096 | None:intergenic | 45.0% | |
| AGAGATGAAACGTCGTCGTT+TGG | + | chr1.4:6705280-6705299 | None:intergenic | 45.0% | |
| AGGTGCATCCCATATACCTT+TGG | + | chr1.4:6708111-6708130 | None:intergenic | 45.0% | |
| AGTGGTCAGACTTTCCGTTA+TGG | - | chr1.4:6705709-6705728 | MS.gene52444:intron | 45.0% | |
| AGTTGTACTTAGCAGCTTCC+AGG | + | chr1.4:6707252-6707271 | None:intergenic | 45.0% | |
| ATGACGACCCTTGTAATGGT+TGG | - | chr1.4:6706223-6706242 | MS.gene52444:intron | 45.0% | |
| ATTGTGGGCCAACCATTACA+AGG | + | chr1.4:6706234-6706253 | None:intergenic | 45.0% | |
| CGCCACTGTTAAATTTGTGG+TGG | + | chr1.4:6705437-6705456 | None:intergenic | 45.0% | |
| CTGAAGAAGGAAGACAAACC+GGG | + | chr1.4:6706284-6706303 | None:intergenic | 45.0% | |
| GAAGAGGATGCTAAAGCCAA+AGG | - | chr1.4:6708092-6708111 | MS.gene52444:CDS | 45.0% | |
| GCCAAAGTCTTTACTAGCGA+TGG | + | chr1.4:6705332-6705351 | None:intergenic | 45.0% | |
| GCTGAAGAAGGAAGACAAAC+CGG | + | chr1.4:6706285-6706304 | None:intergenic | 45.0% | |
| GGGCGAAATGGAAAGAAGAT+TGG | + | chr1.4:6705303-6705322 | None:intergenic | 45.0% | |
| GGTGGAACTTTATCTAACGC+CGG | - | chr1.4:6705682-6705701 | MS.gene52444:intron | 45.0% | |
| GTGGATGAGGGTGATTTACT+CGG | - | chr1.4:6706107-6706126 | MS.gene52444:intron | 45.0% | |
| GTTGTACTTAGCAGCTTCCA+GGG | + | chr1.4:6707251-6707270 | None:intergenic | 45.0% | |
| GTTTGTCTTCCTTCTTCAGC+TGG | - | chr1.4:6706285-6706304 | MS.gene52444:intron | 45.0% | |
| TACTAAAGATGCAGAGTGGC+TGG | - | chr1.4:6706143-6706162 | MS.gene52444:intron | 45.0% | |
| TCCTCAAACGGCAAACGTAA+CGG | - | chr1.4:6705732-6705751 | MS.gene52444:intron | 45.0% | |
| TTCGAACCCATCGGAATTGT+GGG | + | chr1.4:6706249-6706268 | None:intergenic | 45.0% | |
| TTGGAGGATCTCCATTGTAG+TGG | - | chr1.4:6706979-6706998 | MS.gene52444:intron | 45.0% | |
| TTGGCCATTTACGGAACTGT+GGG | + | chr1.4:6707854-6707873 | None:intergenic | 45.0% | |
| TTGGGGGAAAACTGACTACA+CGG | - | chr1.4:6707592-6707611 | MS.gene52444:CDS | 45.0% | |
| TTGTGGGCCAACCATTACAA+GGG | + | chr1.4:6706233-6706252 | None:intergenic | 45.0% | |
| TTTGCTACGTGTAAAGCGTG+TGG | - | chr1.4:6708070-6708089 | MS.gene52444:CDS | 45.0% | |
| TTTGGCCATTTACGGAACTG+TGG | + | chr1.4:6707855-6707874 | None:intergenic | 45.0% | |
| ! | AACGGCAAACGTAACGGAAT+TGG | - | chr1.4:6705738-6705757 | MS.gene52444:intron | 45.0% |
| ! | TGGGATCCACTTAAGCATTG+AGG | + | chr1.4:6706855-6706874 | None:intergenic | 45.0% |
| ! | TTGCCGTTTGAGGACCATAA+CGG | + | chr1.4:6705726-6705745 | None:intergenic | 45.0% |
| ! | TTTGCTTCACTTGGTGGTCT+TGG | - | chr1.4:6705823-6705842 | MS.gene52444:intron | 45.0% |
| ! | TTTTTGATCCGTGCTCCGTT+CGG | - | chr1.4:6706452-6706471 | MS.gene52444:intron | 45.0% |
| !! | GACGGATTATCTTGGGTTGA+CGG | - | chr1.4:6705657-6705676 | MS.gene52444:intron | 45.0% |
| !! | GATTATCTTGGGTTGACGGT+GGG | - | chr1.4:6705661-6705680 | MS.gene52444:intron | 45.0% |
| !! | GGAGGGTTGAGATTTGTTGA+GGG | - | chr1.4:6708011-6708030 | MS.gene52444:CDS | 45.0% |
| !! | GTTTTCTATGCCTGACTCGT+CGG | + | chr1.4:6706697-6706716 | None:intergenic | 45.0% |
| !! | TGGAGGGTTGAGATTTGTTG+AGG | - | chr1.4:6708010-6708029 | MS.gene52444:CDS | 45.0% |
| !!! | AGGTGACGGTTTTGATTACG+TGG | - | chr1.4:6706179-6706198 | MS.gene52444:intron | 45.0% |
| !!! | GACGGTTTTGATTACGTGGA+AGG | - | chr1.4:6706183-6706202 | MS.gene52444:intron | 45.0% |
| !! | ATATATTATAAAAGAAAATT+AGG | - | chr1.4:6706571-6706590 | MS.gene52444:intron | 5.0% |
| !!! | TTTTTTTTTTTAGAAAAAAT+TGG | - | chr1.4:6707302-6707321 | MS.gene52444:CDS | 5.0% |
| ACGTGTAAAGCGTGTGGAAG+AGG | - | chr1.4:6708076-6708095 | MS.gene52444:CDS | 50.0% | |
| AGATAATCCGTCCACGACCT+CGG | + | chr1.4:6705649-6705668 | None:intergenic | 50.0% | |
| ATCCTCAAACATGGGGTTGG+CGG | - | chr1.4:6708200-6708219 | MS.gene52444:CDS | 50.0% | |
| CAATAAACCCGAACGGAGCA+CGG | + | chr1.4:6706463-6706482 | None:intergenic | 50.0% | |
| CCTAATAGGTACCCCCATTG+TGG | - | chr1.4:6706784-6706803 | MS.gene52444:intron | 50.0% | |
| CGATGGAATTAGGGGCGAAA+TGG | + | chr1.4:6705315-6705334 | None:intergenic | 50.0% | |
| CGCCGCCACTGTTAAATTTG+TGG | + | chr1.4:6705440-6705459 | None:intergenic | 50.0% | |
| GAAAGTCTGACCACTGACAC+CGG | + | chr1.4:6705704-6705723 | None:intergenic | 50.0% | |
| GAGGTCTTAAGTGAGACCCT+GGG | + | chr1.4:6706836-6706855 | None:intergenic | 50.0% | |
| GATGAAACGTCGTCGTTTGG+TGG | + | chr1.4:6705277-6705296 | None:intergenic | 50.0% | |
| GTGACACTACCAGAAGGTGA+CGG | - | chr1.4:6706165-6706184 | MS.gene52444:intron | 50.0% | |
| GTTCGAACCCATCGGAATTG+TGG | + | chr1.4:6706250-6706269 | None:intergenic | 50.0% | |
| TCTTCCTTCTTCAGCTGGAC+CGG | - | chr1.4:6706290-6706309 | MS.gene52444:intron | 50.0% | |
| TGAGGTCTTAAGTGAGACCC+TGG | + | chr1.4:6706837-6706856 | None:intergenic | 50.0% | |
| TGGCCATTTACGGAACTGTG+GGG | + | chr1.4:6707853-6707872 | None:intergenic | 50.0% | |
| TTACGTGGAAGGGTTCGTTG+TGG | - | chr1.4:6706194-6706213 | MS.gene52444:intron | 50.0% | |
| TTCTTCCCATAATGCCCCAC+CGG | + | chr1.4:6705590-6705609 | None:intergenic | 50.0% | |
| ! | CTTGGTGGTCTTGGTCAGTT+TGG | - | chr1.4:6705832-6705851 | MS.gene52444:intron | 50.0% |
| ! | GGTAACGGTCACTCCATCAA+CGG | - | chr1.4:6705463-6705482 | MS.gene52444:CDS | 50.0% |
| ! | GTCAGTTTTCCCCCAACCAT+TGG | + | chr1.4:6707588-6707607 | None:intergenic | 50.0% |
| ! | TACGGCTTTTACCACATCGG+CGG | + | chr1.4:6705401-6705420 | None:intergenic | 50.0% |
| ! | TCCGTTACGTTTGCCGTTTG+AGG | + | chr1.4:6705736-6705755 | None:intergenic | 50.0% |
| ! | TTAAGCTTGTTCCGAGGTCG+TGG | - | chr1.4:6705635-6705654 | MS.gene52444:intron | 50.0% |
| ! | TTATCTAACGCCGGTGTCAG+TGG | - | chr1.4:6705691-6705710 | MS.gene52444:intron | 50.0% |
| ! | TTTTGATCCGTGCTCCGTTC+GGG | - | chr1.4:6706453-6706472 | MS.gene52444:intron | 50.0% |
| !! | AGGTCGTGGACGGATTATCT+TGG | - | chr1.4:6705649-6705668 | MS.gene52444:intron | 50.0% |
| !! | CCACAATGGGGGTACCTATT+AGG | + | chr1.4:6706787-6706806 | None:intergenic | 50.0% |
| !! | GGATTATCTTGGGTTGACGG+TGG | - | chr1.4:6705660-6705679 | MS.gene52444:intron | 50.0% |
| !! | GGTCGTGGACGGATTATCTT+GGG | - | chr1.4:6705650-6705669 | MS.gene52444:intron | 50.0% |
| !! | TGGGGATCTTCTAAGACCCA+GGG | - | chr1.4:6706817-6706836 | MS.gene52444:intron | 50.0% |
| !! | TGGGGGTACCTATTAGGTAC+CGG | + | chr1.4:6706781-6706800 | None:intergenic | 50.0% |
| !! | TTGGGGATCTTCTAAGACCC+AGG | - | chr1.4:6706816-6706835 | MS.gene52444:intron | 50.0% |
| !!! | GGTGGTTGCTGCTGCTTTTA+CGG | + | chr1.4:6705419-6705438 | None:intergenic | 50.0% |
| AATTTAACAGTGGCGGCGCG+TGG | - | chr1.4:6705442-6705461 | MS.gene52444:CDS | 55.0% | |
| AGAACCGGTCCAGCTGAAGA+AGG | + | chr1.4:6706297-6706316 | None:intergenic | 55.0% | |
| CGTAAAGGATCCGACGAGTC+AGG | - | chr1.4:6706684-6706703 | MS.gene52444:intron | 55.0% | |
| GACAAGTCCTTTCTCCGCCA+TGG | + | chr1.4:6705494-6705513 | None:intergenic | 55.0% | |
| GGTCCCCACAGTTCCGTAAA+TGG | - | chr1.4:6707847-6707866 | MS.gene52444:CDS | 55.0% | |
| GTTCCACACGTCGACGTTTC+CGG | - | chr1.4:6705568-6705587 | MS.gene52444:intron | 55.0% | |
| TATGGGATGCACCTCACCCA+TGG | - | chr1.4:6708117-6708136 | MS.gene52444:CDS | 55.0% | |
| TGGCTGGTGACACTACCAGA+AGG | - | chr1.4:6706159-6706178 | MS.gene52444:intron | 55.0% | |
| ! | ACGTTTCCGGTGGGGCATTA+TGG | - | chr1.4:6705581-6705600 | MS.gene52444:intron | 55.0% |
| ! | CGTTTCCGGTGGGGCATTAT+GGG | - | chr1.4:6705582-6705601 | MS.gene52444:intron | 55.0% |
| ! | GGTTGGCCCACAATTCCGAT+GGG | - | chr1.4:6706240-6706259 | MS.gene52444:intron | 55.0% |
| ! | TGGTTGGCCCACAATTCCGA+TGG | - | chr1.4:6706239-6706258 | MS.gene52444:intron | 55.0% |
| !! | GGGGGTACCTATTAGGTACC+GGG | + | chr1.4:6706780-6706799 | None:intergenic | 55.0% |
| !! | TATCTTGGGTTGACGGTGGG+TGG | - | chr1.4:6705664-6705683 | MS.gene52444:intron | 55.0% |
| ACACGTCGACGTTTCCGGTG+GGG | - | chr1.4:6705573-6705592 | MS.gene52444:intron | 60.0% | |
| ACCACATCGGCGGTGGTGTA+AGG | + | chr1.4:6705391-6705410 | None:intergenic | 60.0% | |
| CACACGTCGACGTTTCCGGT+GGG | - | chr1.4:6705572-6705591 | MS.gene52444:intron | 60.0% | |
| CATCAACGGCCAAGCCATGG+CGG | - | chr1.4:6705477-6705496 | MS.gene52444:intron | 60.0% | |
| CCACATCGGCGGTGGTGTAA+GGG | + | chr1.4:6705390-6705409 | None:intergenic | 60.0% | |
| CTCCATCAACGGCCAAGCCA+TGG | - | chr1.4:6705474-6705493 | MS.gene52444:intron | 60.0% | |
| GACCGCCAACCCCATGTTTG+AGG | + | chr1.4:6708205-6708224 | None:intergenic | 60.0% | |
| GCTTGTTCCGAGGTCGTGGA+CGG | - | chr1.4:6705639-6705658 | MS.gene52444:intron | 60.0% | |
| GGTGGTGTAAGGGCGGAGTA+CGG | + | chr1.4:6705380-6705399 | None:intergenic | 60.0% | |
| GTCCTTTCTCCGCCATGGCT+TGG | + | chr1.4:6705489-6705508 | None:intergenic | 60.0% | |
| TGTCCTCGACATGCGAGCCA+CGG | - | chr1.4:6705510-6705529 | MS.gene52444:intron | 60.0% | |
| TTGAAAAGGCTCCTCCGCCG+TGG | + | chr1.4:6705530-6705549 | None:intergenic | 60.0% | |
| ! | GGCTTTTACCACATCGGCGG+TGG | + | chr1.4:6705398-6705417 | None:intergenic | 60.0% |
| ACAGTGGCGGCGCGTGGTAA+CGG | - | chr1.4:6705448-6705467 | MS.gene52444:CDS | 65.0% | |
| CATCGGCGGTGGTGTAAGGG+CGG | + | chr1.4:6705387-6705406 | None:intergenic | 65.0% | |
| CCACACGTCGACGTTTCCGG+TGG | - | chr1.4:6705571-6705590 | MS.gene52444:intron | 65.0% | |
| CCACCGGAAACGTCGACGTG+TGG | + | chr1.4:6705574-6705593 | None:intergenic | 65.0% | |
| CCCTTACACCACCGCCGATG+TGG | - | chr1.4:6705387-6705406 | MS.gene52444:CDS | 65.0% | |
| GTAAGGGCGGAGTACGGCGA+GGG | + | chr1.4:6705374-6705393 | None:intergenic | 65.0% | |
| TAAGGGCGGAGTACGGCGAG+GGG | + | chr1.4:6705373-6705392 | None:intergenic | 65.0% | |
| TGTAAGGGCGGAGTACGGCG+AGG | + | chr1.4:6705375-6705394 | None:intergenic | 65.0% | |
| ! | CGCCATGGCTTGGCCGTTGA+TGG | + | chr1.4:6705479-6705498 | None:intergenic | 65.0% |
| ! | GGCCAAGCCATGGCGGAGAA+AGG | - | chr1.4:6705484-6705503 | MS.gene52444:intron | 65.0% |
| CCTCGACATGCGAGCCACGG+CGG | - | chr1.4:6705513-6705532 | MS.gene52444:intron | 70.0% | |
| GAGTACGGCGAGGGGAGTGG+AGG | + | chr1.4:6705365-6705384 | None:intergenic | 70.0% | |
| CCGCCGTGGCTCGCATGTCG+AGG | + | chr1.4:6705516-6705535 | None:intergenic | 75.0% | |
| CGACATGCGAGCCACGGCGG+AGG | - | chr1.4:6705516-6705535 | MS.gene52444:intron | 75.0% | |
| GCGGAGTACGGCGAGGGGAG+TGG | + | chr1.4:6705368-6705387 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6705226 | 6708259 | 6705226 | ID=MS.gene52444 |
| chr1.4 | mRNA | 6705226 | 6708259 | 6705226 | ID=MS.gene52444.t1;Parent=MS.gene52444 |
| chr1.4 | exon | 6707585 | 6708259 | 6707585 | ID=MS.gene52444.t1.exon1;Parent=MS.gene52444.t1 |
| chr1.4 | CDS | 6707585 | 6708259 | 6707585 | ID=cds.MS.gene52444.t1;Parent=MS.gene52444.t1 |
| chr1.4 | exon | 6707108 | 6707383 | 6707108 | ID=MS.gene52444.t1.exon2;Parent=MS.gene52444.t1 |
| chr1.4 | CDS | 6707108 | 6707383 | 6707108 | ID=cds.MS.gene52444.t1;Parent=MS.gene52444.t1 |
| chr1.4 | exon | 6705226 | 6705492 | 6705226 | ID=MS.gene52444.t1.exon3;Parent=MS.gene52444.t1 |
| chr1.4 | CDS | 6705226 | 6705492 | 6705226 | ID=cds.MS.gene52444.t1;Parent=MS.gene52444.t1 |
| Gene Sequence |
| Protein sequence |
