Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52516.t1 | RHN45233.1 | 92.7 | 301 | 22 | 0 | 1 | 301 | 42 | 342 | 1.40E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52516.t1 | P0AFR5 | 27.4 | 215 | 139 | 3 | 68 | 282 | 9 | 206 | 1.2e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52516.t1 | A0A396GXK8 | 92.7 | 301 | 22 | 0 | 1 | 301 | 42 | 342 | 1.0e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene52516 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene52516 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene52516 | 0.810685 | 1.02E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene52516 | 0.818885 | 1.55E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene52516 | 0.81362 | 2.33E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene52516 | 0.825552 | 4.40E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene52516 | 0.802646 | 5.08E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene52516 | 0.81197 | 5.36E-51 | -1.69E-46 |
| MS.gene050876 | MS.gene52516 | 0.815654 | 8.27E-52 | -1.69E-46 |
| MS.gene05100 | MS.gene52516 | 0.800202 | 1.61E-48 | -1.69E-46 |
| MS.gene051810 | MS.gene52516 | 0.80534 | 1.40E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene52516 | 0.807516 | 4.87E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene52516 | 0.800933 | 1.14E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene52516 | 0.801348 | 9.39E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene52516 | 0.810079 | 1.38E-50 | -1.69E-46 |
| MS.gene055776 | MS.gene52516 | 0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene52516 | 0.807347 | 5.28E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene52516 | 0.80989 | 1.51E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene52516 | 0.81958 | 1.08E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene52516 | 0.817907 | 2.59E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene52516 | 0.80416 | 2.47E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene52516 | 0.814514 | 1.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52516.t1 | MTR_7g034590 | 86.310 | 168 | 23 | 0 | 1 | 168 | 1 | 168 | 4.53e-108 | 311 |
| MS.gene52516.t1 | MTR_7g034590 | 88.344 | 163 | 19 | 0 | 1 | 163 | 1 | 163 | 5.57e-107 | 309 |
| MS.gene52516.t1 | MTR_7g034590 | 75.595 | 168 | 23 | 1 | 1 | 168 | 1 | 150 | 3.27e-89 | 263 |
| MS.gene52516.t1 | MTR_6g045617 | 74.757 | 103 | 26 | 0 | 1 | 103 | 1 | 103 | 1.48e-52 | 168 |
| MS.gene52516.t1 | MTR_6g045607 | 93.590 | 78 | 5 | 0 | 169 | 246 | 1 | 78 | 9.86e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52516.t1 | AT3G01920 | 65.125 | 281 | 90 | 2 | 10 | 290 | 25 | 297 | 1.88e-134 | 383 |
| MS.gene52516.t1 | AT3G01920 | 59.416 | 308 | 90 | 3 | 10 | 290 | 25 | 324 | 4.52e-128 | 368 |
Find 85 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGGGATTTGTGGCTTCT+TGG | 0.184892 | 7.2:-62679836 | None:intergenic |
| ACATACCTTGTGCATATTAA+TGG | 0.195580 | 7.2:-62683399 | None:intergenic |
| CCAAACGCCATGGAGGTTTA+TGG | 0.240695 | 7.2:-62679793 | None:intergenic |
| TGGCTCTGACTCATGGAAAT+TGG | 0.273003 | 7.2:+62679973 | MS.gene52516:CDS |
| AATACCATCCAGTCTGAAAT+TGG | 0.281224 | 7.2:-62687159 | None:intergenic |
| ACAGTACACGTTCATCTTAA+TGG | 0.283468 | 7.2:+62683245 | MS.gene52516:intron |
| CCAAACCTTATGCACTGTTT+TGG | 0.334771 | 7.2:-62683282 | None:intergenic |
| TATTGATACAACTCCTCTTC+GGG | 0.349847 | 7.2:-62679852 | None:intergenic |
| CCAAAACAGTGCATAAGGTT+TGG | 0.352337 | 7.2:+62683282 | MS.gene52516:CDS |
| TCATCCATTCGTCTTCGTTC+AGG | 0.356427 | 7.2:-62684693 | None:intergenic |
| CAATGGCTGAGTTGTTTGTT+AGG | 0.362631 | 7.2:-62681290 | None:intergenic |
| TACGTATCAGCTATCATAAC+TGG | 0.367312 | 7.2:-62684721 | None:intergenic |
| CTTCAACAAGGATGGTGGTT+TGG | 0.382343 | 7.2:+62679928 | MS.gene52516:CDS |
| CAACTCCTCTTCGGGATTTG+TGG | 0.382575 | 7.2:-62679844 | None:intergenic |
| TCTGTGTATTTGAGACGCTT+GGG | 0.385626 | 7.2:-62679896 | None:intergenic |
| GACATAGATAAGTACACATC+TGG | 0.385667 | 7.2:+62681632 | MS.gene52516:CDS |
| TAGGACCCTGGGAGGCAATT+TGG | 0.386336 | 7.2:-62685237 | None:intergenic |
| ATCTGTGTATTTGAGACGCT+TGG | 0.389086 | 7.2:-62679897 | None:intergenic |
| CAAAACAGTGCATAAGGTTT+GGG | 0.400628 | 7.2:+62683283 | MS.gene52516:CDS |
| AATTTCAGACTGGATGGTAT+TGG | 0.403596 | 7.2:+62687161 | MS.gene52516:CDS |
| ATATTGATACAACTCCTCTT+CGG | 0.403677 | 7.2:-62679853 | None:intergenic |
| CTTTCCTTCCCGTAGGACCC+TGG | 0.407463 | 7.2:-62685249 | None:intergenic |
| CCATAAACCTCCATGGCGTT+TGG | 0.413747 | 7.2:+62679793 | MS.gene52516:CDS |
| CTTTAGTATTGCTTGACAAA+TGG | 0.419936 | 7.2:-62683364 | None:intergenic |
| CATTACCAAAACAGTGCATA+AGG | 0.430230 | 7.2:+62683277 | MS.gene52516:CDS |
| TACATTGAAGCTGACCCATC+TGG | 0.437385 | 7.2:+62679953 | MS.gene52516:CDS |
| GCTGTTAAGCATTGCCTACC+TGG | 0.453248 | 7.2:+62681698 | MS.gene52516:CDS |
| ACCCATCTGGCTCTGACTCA+TGG | 0.462285 | 7.2:+62679966 | MS.gene52516:CDS |
| TCATCGATTAGAAATGGAAA+TGG | 0.482976 | 7.2:+62679754 | None:intergenic |
| GAAATGGCAGCTTGTGTTTG+TGG | 0.487246 | 7.2:+62679770 | MS.gene52516:CDS |
| AAGGGTGATTAACATTCAAA+TGG | 0.488049 | 7.2:-62687229 | None:intergenic |
| AATTGCCTCCCAGGGTCCTA+CGG | 0.491323 | 7.2:+62685240 | MS.gene52516:CDS |
| ACATGACCAAATTGCCTCCC+AGG | 0.500331 | 7.2:+62685231 | MS.gene52516:CDS |
| GCTTGACAAATGGCATCGTC+AGG | 0.502742 | 7.2:-62683354 | None:intergenic |
| TTTCCTTCCCGTAGGACCCT+GGG | 0.504304 | 7.2:-62685248 | None:intergenic |
| ATTAACATTCAAATGGCAGC+AGG | 0.507067 | 7.2:-62687222 | None:intergenic |
| ATTGCCTCCCAGGGTCCTAC+GGG | 0.518707 | 7.2:+62685241 | MS.gene52516:CDS |
| ATACCTACGTAGCCGTTCAA+TGG | 0.519401 | 7.2:-62681307 | None:intergenic |
| CAGCTTTGAATAAATTTGCA+TGG | 0.524320 | 7.2:-62681679 | None:intergenic |
| TGTTTGAAAAGATTAACAAC+AGG | 0.528490 | 7.2:-62679998 | None:intergenic |
| TCTGGGTTTCCGTGTGGTGA+TGG | 0.529851 | 7.2:+62681650 | MS.gene52516:CDS |
| TTCAGGGTCCAATTTCAGAC+TGG | 0.535241 | 7.2:+62687151 | MS.gene52516:intron |
| AGGAGTTGTATCAATATCAA+TGG | 0.538349 | 7.2:+62679859 | MS.gene52516:CDS |
| CTGTGTATTTGAGACGCTTG+GGG | 0.549164 | 7.2:-62679895 | None:intergenic |
| CAAGAATATAGACGGTTCAA+AGG | 0.550560 | 7.2:+62681421 | MS.gene52516:CDS |
| GAAGATAATCAGCAAACTGA+TGG | 0.553611 | 7.2:+62687183 | MS.gene52516:CDS |
| AAATGGCATCGTCAGGCATA+CGG | 0.567821 | 7.2:-62683347 | None:intergenic |
| GTTATGATAGCTGATACGTA+TGG | 0.569995 | 7.2:+62684724 | MS.gene52516:CDS |
| GGGTCCAATTTCAGACTGGA+TGG | 0.571381 | 7.2:+62687155 | MS.gene52516:intron |
| CAGGGTCCTACGGGAAGGAA+AGG | 0.573248 | 7.2:+62685250 | MS.gene52516:CDS |
| TTCCATGAGTCAGAGCCAGA+TGG | 0.578782 | 7.2:-62679968 | None:intergenic |
| GCACTGACAGTGTATCAGTA+GGG | 0.584797 | 7.2:-62680039 | None:intergenic |
| TCAGCAAACTGATGGTGAAG+AGG | 0.588222 | 7.2:+62687191 | MS.gene52516:CDS |
| CCTCCCAGGGTCCTACGGGA+AGG | 0.591496 | 7.2:+62685245 | MS.gene52516:CDS |
| CAAACAACTCAGCCATTGAA+CGG | 0.593103 | 7.2:+62681295 | MS.gene52516:CDS |
| GAGAAAGCGTCCAAACGCCA+TGG | 0.600694 | 7.2:-62679803 | None:intergenic |
| TTTCCGTGTGGTGATGGTCA+AGG | 0.602525 | 7.2:+62681656 | MS.gene52516:CDS |
| AGTTCCTGAACGAAGACGAA+TGG | 0.605092 | 7.2:+62684689 | MS.gene52516:CDS |
| CATTTGTCAAGCAATACTAA+AGG | 0.605552 | 7.2:+62683365 | MS.gene52516:CDS |
| TCCATGAGTCAGAGCCAGAT+GGG | 0.610183 | 7.2:-62679967 | None:intergenic |
| GAGTGGCATAAGATGCTAAG+TGG | 0.614227 | 7.2:-62681602 | None:intergenic |
| TGTTGATGGTGGTGTAAGAG+TGG | 0.616961 | 7.2:+62685187 | MS.gene52516:CDS |
| AATACTCGCTTCAACAAGGA+TGG | 0.619321 | 7.2:+62679920 | MS.gene52516:CDS |
| AGCTGATACGTATGGACCAG+AGG | 0.619606 | 7.2:+62684732 | MS.gene52516:CDS |
| ACTCGCTTCAACAAGGATGG+TGG | 0.620944 | 7.2:+62679923 | MS.gene52516:CDS |
| TGCAGAATCAAGAATATAGA+CGG | 0.621459 | 7.2:+62681413 | MS.gene52516:intron |
| CATGACCAAATTGCCTCCCA+GGG | 0.626606 | 7.2:+62685232 | MS.gene52516:CDS |
| AGCACTGACAGTGTATCAGT+AGG | 0.631912 | 7.2:-62680040 | None:intergenic |
| TAACTACCTTTCCTTCCCGT+AGG | 0.639230 | 7.2:-62685256 | None:intergenic |
| TATCTATGTCGCTAAATGAG+TGG | 0.640128 | 7.2:-62681619 | None:intergenic |
| CAGCCATTGAACGGCTACGT+AGG | 0.644701 | 7.2:+62681304 | MS.gene52516:CDS |
| ACATAGATAAGTACACATCT+GGG | 0.647148 | 7.2:+62681633 | MS.gene52516:CDS |
| AGAAGCCACAAATCCCGAAG+AGG | 0.652891 | 7.2:+62679839 | MS.gene52516:CDS |
| GAGAGAATACTTACAGGACC+AGG | 0.653062 | 7.2:-62681716 | None:intergenic |
| TGGCCTTGACCATCACCACA+CGG | 0.655857 | 7.2:-62681659 | None:intergenic |
| AGATAATACTCGCTTCAACA+AGG | 0.660260 | 7.2:+62679916 | MS.gene52516:CDS |
| TTTGTGGCCATAAACCTCCA+TGG | 0.662022 | 7.2:+62679786 | MS.gene52516:CDS |
| TTAACATTCAAATGGCAGCA+GGG | 0.664901 | 7.2:-62687221 | None:intergenic |
| TACACATCTGGGTTTCCGTG+TGG | 0.674433 | 7.2:+62681644 | MS.gene52516:CDS |
| CCTTCCCGTAGGACCCTGGG+AGG | 0.691457 | 7.2:-62685245 | None:intergenic |
| AAAGCGTCCAAACGCCATGG+AGG | 0.696394 | 7.2:-62679800 | None:intergenic |
| TTTGGTCATGTCAACCACAG+TGG | 0.703360 | 7.2:-62685219 | None:intergenic |
| GAATACTTACAGGACCAGGT+AGG | 0.711191 | 7.2:-62681712 | None:intergenic |
| GTACACCATTAATATGCACA+AGG | 0.742245 | 7.2:+62683394 | MS.gene52516:CDS |
| AGTGGCTCAATCGTCCACTG+TGG | 0.749329 | 7.2:+62685205 | MS.gene52516:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 62679767 | 62687236 | 62679767 | ID=MS.gene52516 |
| chr7.2 | mRNA | 62679767 | 62687236 | 62679767 | ID=MS.gene52516.t1;Parent=MS.gene52516 |
| chr7.2 | exon | 62679767 | 62680053 | 62679767 | ID=MS.gene52516.t1.exon1;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62679767 | 62680053 | 62679767 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62681272 | 62681325 | 62681272 | ID=MS.gene52516.t1.exon2;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62681272 | 62681325 | 62681272 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62681418 | 62681442 | 62681418 | ID=MS.gene52516.t1.exon3;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62681418 | 62681442 | 62681418 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62681602 | 62681724 | 62681602 | ID=MS.gene52516.t1.exon4;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62681602 | 62681724 | 62681602 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62683249 | 62683415 | 62683249 | ID=MS.gene52516.t1.exon5;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62683249 | 62683415 | 62683249 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62684684 | 62684753 | 62684684 | ID=MS.gene52516.t1.exon6;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62684684 | 62684753 | 62684684 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62685173 | 62685271 | 62685173 | ID=MS.gene52516.t1.exon7;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62685173 | 62685271 | 62685173 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| chr7.2 | exon | 62687156 | 62687236 | 62687156 | ID=MS.gene52516.t1.exon8;Parent=MS.gene52516.t1 |
| chr7.2 | CDS | 62687156 | 62687236 | 62687156 | ID=cds.MS.gene52516.t1;Parent=MS.gene52516.t1 |
| Gene Sequence |
| Protein sequence |