Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52970.t1 | XP_003590835.1 | 99.2 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 5.60E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52970.t1 | P55844 | 91.0 | 133 | 12 | 0 | 1 | 133 | 1 | 133 | 2.2e-61 | 236.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52970.t1 | G7I4V0 | 99.2 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 4.1e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055808 | MS.gene52970 | 0.822324 | 2.52E-53 | -1.69E-46 |
MS.gene060429 | MS.gene52970 | 0.826752 | 2.28E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene52970 | MS.gene066035 | PPI |
MS.gene52970 | MS.gene066761 | PPI |
MS.gene52970 | MS.gene52972 | PPI |
MS.gene52970 | MS.gene71415 | PPI |
MS.gene52970 | MS.gene014197 | PPI |
MS.gene52970 | MS.gene066034 | PPI |
MS.gene52970 | MS.gene004833 | PPI |
MS.gene52970 | MS.gene68733 | PPI |
MS.gene52970 | MS.gene77100 | PPI |
MS.gene52970 | MS.gene041630 | PPI |
MS.gene52970 | MS.gene68134 | PPI |
MS.gene52970 | MS.gene063084 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52970.t1 | MTR_1g075720 | 99.248 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 2.34e-90 | 258 |
MS.gene52970.t1 | MTR_4g120770 | 95.489 | 133 | 6 | 0 | 1 | 133 | 1 | 133 | 4.44e-89 | 254 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52970.t1 | AT2G20450 | 84.962 | 133 | 20 | 0 | 1 | 133 | 1 | 133 | 7.52e-77 | 224 |
MS.gene52970.t1 | AT4G27090 | 85.385 | 130 | 19 | 0 | 1 | 130 | 1 | 130 | 6.52e-76 | 221 |
Find 41 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAACCTATCAAAATCATTA+AGG | 0.237759 | 1.1:-56661519 | None:intergenic |
TTGACGAGATCCTTCTTCTT+AGG | 0.250131 | 1.1:-56661281 | None:intergenic |
GATTATGTTGGCCAAGATTA+AGG | 0.263288 | 1.1:+56661543 | MS.gene52970:CDS |
GTCAACTATGGTCCAGATTA+TGG | 0.285686 | 1.1:+56661034 | MS.gene52970:CDS |
GAAAATGGGTTACCCTAGTT+TGG | 0.329740 | 1.1:-56661087 | None:intergenic |
GAAAGTCTCTTGAAATTGAT+TGG | 0.345301 | 1.1:-56661224 | None:intergenic |
TATCAATCTTGATATCAGTT+AGG | 0.362900 | 1.1:-56661247 | None:intergenic |
AAAGTCTCTTGAAATTGATT+GGG | 0.365242 | 1.1:-56661223 | None:intergenic |
ACAACGAGCTTGCCATAATC+TGG | 0.375981 | 1.1:-56661046 | None:intergenic |
CTAAAATTATACCTTAATCT+TGG | 0.381940 | 1.1:-56661554 | None:intergenic |
TCTTGTTGATGCACCTGATA+TGG | 0.389997 | 1.1:+56661193 | MS.gene52970:CDS |
ATTGGGGCTCTCTCCATATC+AGG | 0.404038 | 1.1:-56661206 | None:intergenic |
TGCAGAGGGCTGGTGTTGTT+AGG | 0.431787 | 1.1:+56662448 | MS.gene52970:intron |
TTGATGTTATCGACCAAACT+AGG | 0.433748 | 1.1:+56661074 | MS.gene52970:CDS |
GAACCTATCAAAATCATTAA+GGG | 0.440003 | 1.1:-56661518 | None:intergenic |
AACAATCAATTTCCTTCCCC+AGG | 0.448020 | 1.1:-56661479 | None:intergenic |
ATCAATCTTGATATCAGTTA+GGG | 0.462600 | 1.1:-56661246 | None:intergenic |
AGAGTTGCACTTGTCAACTA+TGG | 0.467898 | 1.1:+56661022 | MS.gene52970:CDS |
GCTGAGGAAGACCGCAGCTT+AGG | 0.479614 | 1.1:+56662485 | MS.gene52970:CDS |
TTTCAATTTGTGCAGAGGGC+TGG | 0.483986 | 1.1:+56662438 | MS.gene52970:intron |
GAAGGATCTCGTCAAGGCTA+TGG | 0.488672 | 1.1:+56661289 | MS.gene52970:CDS |
GGAAATTGATTGTTAAGAAG+AGG | 0.493248 | 1.1:+56661488 | MS.gene52970:CDS |
TTCAAGAGGTTTGTTGAGAT+CGG | 0.494020 | 1.1:+56660998 | MS.gene52970:CDS |
CAAGAGAGTTCCTAAGAAGA+AGG | 0.504705 | 1.1:+56661271 | MS.gene52970:CDS |
ACAAGTGGGAGAAGAGCTCC+TGG | 0.539704 | 1.1:+56661461 | MS.gene52970:CDS |
AATTGATTGTTAAGAAGAGG+AGG | 0.539799 | 1.1:+56661491 | MS.gene52970:CDS |
TGATAGGTTCAAGATTATGT+TGG | 0.542816 | 1.1:+56661531 | MS.gene52970:CDS |
TGATAGATGTGAAGAACAAG+TGG | 0.562094 | 1.1:+56661446 | MS.gene52970:intron |
ATCTCAACAAACCTCTTGAA+CGG | 0.571035 | 1.1:-56660995 | None:intergenic |
AAGTCTCTTGAAATTGATTG+GGG | 0.581289 | 1.1:-56661222 | None:intergenic |
GGGAGAAGAGCTCCTGGGGA+AGG | 0.586483 | 1.1:+56661467 | MS.gene52970:CDS |
GTCAAGGCTATGGAAGCTGC+AGG | 0.587422 | 1.1:+56661299 | MS.gene52970:CDS |
ATTGATTGTTAAGAAGAGGA+GGG | 0.602431 | 1.1:+56661492 | MS.gene52970:CDS |
TGATGTTATCGACCAAACTA+GGG | 0.607546 | 1.1:+56661075 | MS.gene52970:CDS |
GGCAAGAACTTGCTAAGCTG+AGG | 0.613930 | 1.1:+56662469 | MS.gene52970:CDS |
AAGTGGGAGAAGAGCTCCTG+GGG | 0.619297 | 1.1:+56661463 | MS.gene52970:CDS |
TCTTTGTTAAGCCGTTCAAG+AGG | 0.622760 | 1.1:+56660984 | MS.gene52970:intron |
GATAGATGTGAAGAACAAGT+GGG | 0.623335 | 1.1:+56661447 | MS.gene52970:intron |
TAAGAAGAAGGATCTCGTCA+AGG | 0.637349 | 1.1:+56661283 | MS.gene52970:CDS |
CAAGTGGGAGAAGAGCTCCT+GGG | 0.641380 | 1.1:+56661462 | MS.gene52970:CDS |
ATGAAGTAATGCCTAAGCTG+CGG | 0.676586 | 1.1:-56662496 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAAAATAAATATATAGAT+AGG | - | chr1.1:56661340-56661359 | None:intergenic | 10.0% |
!!! | AATTTTATGATAAAAGATTA+AGG | - | chr1.1:56662206-56662225 | None:intergenic | 10.0% |
!!! | ATTTTATGATAAAAGATTAA+GGG | - | chr1.1:56662205-56662224 | None:intergenic | 10.0% |
!!! | TAATCTTTTATCATAAAATT+TGG | + | chr1.1:56662206-56662225 | MS.gene52970:intron | 10.0% |
!! | AAAGATTGGAAATTTGAAAA+TGG | - | chr1.1:56661105-56661124 | None:intergenic | 20.0% |
!! | AAGATTGGAAATTTGAAAAT+GGG | - | chr1.1:56661104-56661123 | None:intergenic | 20.0% |
!! | ATTAGAGAAAGATTAAGAAA+TGG | - | chr1.1:56660952-56660971 | None:intergenic | 20.0% |
!! | CTAAAATTATACCTTAATCT+TGG | - | chr1.1:56661557-56661576 | None:intergenic | 20.0% |
!! | TTAAGTTATTTATCCAAACA+AGG | - | chr1.1:56661708-56661727 | None:intergenic | 20.0% |
!! | TTTATGTATTATTCATGGAT+TGG | - | chr1.1:56662136-56662155 | None:intergenic | 20.0% |
!!! | AAGCTTTTATGTATTATTCA+TGG | - | chr1.1:56662086-56662105 | None:intergenic | 20.0% |
!!! | ATTGTATTTCTATAAGCTTT+AGG | + | chr1.1:56661933-56661952 | MS.gene52970:intron | 20.0% |
!!! | GAAATTGGATTTTAATTTTG+TGG | + | chr1.1:56661403-56661422 | MS.gene52970:intron | 20.0% |
!!! | GATTTTAATTTTGTGGTAAT+TGG | + | chr1.1:56661410-56661429 | MS.gene52970:intron | 20.0% |
!!! | TGTGAAATGATTTTAAGTTA+GGG | + | chr1.1:56661598-56661617 | MS.gene52970:intron | 20.0% |
!!! | TTGTATTTCTATAAGCTTTA+GGG | + | chr1.1:56661934-56661953 | MS.gene52970:intron | 20.0% |
!!! | TTGTGAAATGATTTTAAGTT+AGG | + | chr1.1:56661597-56661616 | MS.gene52970:intron | 20.0% |
! | AAAGTCTCTTGAAATTGATT+GGG | - | chr1.1:56661226-56661245 | None:intergenic | 25.0% |
! | ATCAATCTTGATATCAGTTA+GGG | - | chr1.1:56661249-56661268 | None:intergenic | 25.0% |
! | CAAGTTTGTCTATGAAAAAA+CGG | - | chr1.1:56662057-56662076 | None:intergenic | 25.0% |
! | GAACCTATCAAAATCATTAA+GGG | - | chr1.1:56661521-56661540 | None:intergenic | 25.0% |
! | GGTTATTATATAAGCTGTTA+TGG | + | chr1.1:56661873-56661892 | MS.gene52970:intron | 25.0% |
! | TAAAATAAGCTAATCCAAAC+AGG | + | chr1.1:56662322-56662341 | MS.gene52970:intron | 25.0% |
! | TAAATTTCAATTTGTGCAGA+GGG | + | chr1.1:56662434-56662453 | MS.gene52970:intron | 25.0% |
! | TATCAATCTTGATATCAGTT+AGG | - | chr1.1:56661250-56661269 | None:intergenic | 25.0% |
! | TGAACCTATCAAAATCATTA+AGG | - | chr1.1:56661522-56661541 | None:intergenic | 25.0% |
! | TTAAATTTCAATTTGTGCAG+AGG | + | chr1.1:56662433-56662452 | MS.gene52970:intron | 25.0% |
!! | TTGCATTTTATAGTGTAAGT+GGG | + | chr1.1:56661729-56661748 | MS.gene52970:intron | 25.0% |
!! | TTTGCATTTTATAGTGTAAG+TGG | + | chr1.1:56661728-56661747 | MS.gene52970:intron | 25.0% |
!!! | TAGCTTTTGTTTGTTGAAAT+TGG | + | chr1.1:56661388-56661407 | MS.gene52970:intron | 25.0% |
!!! | TTTTGAGAAATTACGCAAAT+GGG | - | chr1.1:56661145-56661164 | None:intergenic | 25.0% |
!!! | TTTTTGAGAAATTACGCAAA+TGG | - | chr1.1:56661146-56661165 | None:intergenic | 25.0% |
AAGTCTCTTGAAATTGATTG+GGG | - | chr1.1:56661225-56661244 | None:intergenic | 30.0% | |
AATTGATTGTTAAGAAGAGG+AGG | + | chr1.1:56661491-56661510 | MS.gene52970:CDS | 30.0% | |
ATGGAGATACAATGTTTGTT+AGG | - | chr1.1:56662031-56662050 | None:intergenic | 30.0% | |
ATTGATTGTTAAGAAGAGGA+GGG | + | chr1.1:56661492-56661511 | MS.gene52970:CDS | 30.0% | |
GAAAGTCTCTTGAAATTGAT+TGG | - | chr1.1:56661227-56661246 | None:intergenic | 30.0% | |
GGAAATTGATTGTTAAGAAG+AGG | + | chr1.1:56661488-56661507 | MS.gene52970:CDS | 30.0% | |
GGATGAAAATGGAAAAAGAT+TGG | - | chr1.1:56661119-56661138 | None:intergenic | 30.0% | |
TAAAAGATTAAGGGTCTGTT+TGG | - | chr1.1:56662196-56662215 | None:intergenic | 30.0% | |
TGATAGGTTCAAGATTATGT+TGG | + | chr1.1:56661531-56661550 | MS.gene52970:CDS | 30.0% | |
TTGTGAAATGCTCTTAAGTT+GGG | + | chr1.1:56661682-56661701 | MS.gene52970:intron | 30.0% | |
! | TGCATTTTATAGTGTAAGTG+GGG | + | chr1.1:56661730-56661749 | MS.gene52970:intron | 30.0% |
! | TGGAGATACAATGTTTGTTA+GGG | - | chr1.1:56662030-56662049 | None:intergenic | 30.0% |
!! | TTGTTTTTCAACTTGTGTCT+AGG | + | chr1.1:56662373-56662392 | MS.gene52970:intron | 30.0% |
!!! | TTGTGATTTGTTTGTTTTGC+AGG | + | chr1.1:56661169-56661188 | MS.gene52970:intron | 30.0% |
AAACCCTACATACTCAACTA+AGG | - | chr1.1:56662349-56662368 | None:intergenic | 35.0% | |
AACCCTACATACTCAACTAA+GGG | - | chr1.1:56662348-56662367 | None:intergenic | 35.0% | |
ATCTCAACAAACCTCTTGAA+CGG | - | chr1.1:56660998-56661017 | None:intergenic | 35.0% | |
GATAGATGTGAAGAACAAGT+GGG | + | chr1.1:56661447-56661466 | MS.gene52970:intron | 35.0% | |
GATTATGTTGGCCAAGATTA+AGG | + | chr1.1:56661543-56661562 | MS.gene52970:CDS | 35.0% | |
GTCTATGAAAAAACGGCTTA+TGG | - | chr1.1:56662050-56662069 | None:intergenic | 35.0% | |
GTTGTGAAATGCTCTTAAGT+TGG | + | chr1.1:56661681-56661700 | MS.gene52970:intron | 35.0% | |
TGATAGATGTGAAGAACAAG+TGG | + | chr1.1:56661446-56661465 | MS.gene52970:intron | 35.0% | |
TGATGTTATCGACCAAACTA+GGG | + | chr1.1:56661075-56661094 | MS.gene52970:CDS | 35.0% | |
TTCTCATAACCCAATTCAAG+CGG | - | chr1.1:56661961-56661980 | None:intergenic | 35.0% | |
TTGATGTTATCGACCAAACT+AGG | + | chr1.1:56661074-56661093 | MS.gene52970:CDS | 35.0% | |
! | ATTAAGTTGTCTATCCAAGC+AGG | - | chr1.1:56661625-56661644 | None:intergenic | 35.0% |
! | CAGACAGTCTTACATGATTT+TGG | + | chr1.1:56662287-56662306 | MS.gene52970:intron | 35.0% |
! | TTAAGTTGTCTATCCAAGCA+GGG | - | chr1.1:56661624-56661643 | None:intergenic | 35.0% |
!! | CTGCCCTTAATGATTTTGAT+AGG | + | chr1.1:56661515-56661534 | MS.gene52970:CDS | 35.0% |
!! | TTCAAGAGGTTTGTTGAGAT+CGG | + | chr1.1:56660998-56661017 | MS.gene52970:CDS | 35.0% |
!!! | TTTGGATTGGCTTCTTTTTG+AGG | - | chr1.1:56662178-56662197 | None:intergenic | 35.0% |
AACAATCAATTTCCTTCCCC+AGG | - | chr1.1:56661482-56661501 | None:intergenic | 40.0% | |
AGAGTTGCACTTGTCAACTA+TGG | + | chr1.1:56661022-56661041 | MS.gene52970:CDS | 40.0% | |
CAAGAGAGTTCCTAAGAAGA+AGG | + | chr1.1:56661271-56661290 | MS.gene52970:CDS | 40.0% | |
GATTAAGGGTCTGTTTGGAT+TGG | - | chr1.1:56662191-56662210 | None:intergenic | 40.0% | |
GTCAACTATGGTCCAGATTA+TGG | + | chr1.1:56661034-56661053 | MS.gene52970:CDS | 40.0% | |
TAAGAAGAAGGATCTCGTCA+AGG | + | chr1.1:56661283-56661302 | MS.gene52970:CDS | 40.0% | |
TCTCATAACCCAATTCAAGC+GGG | - | chr1.1:56661960-56661979 | None:intergenic | 40.0% | |
TCTTGTTGATGCACCTGATA+TGG | + | chr1.1:56661193-56661212 | MS.gene52970:CDS | 40.0% | |
TCTTTGTTAAGCCGTTCAAG+AGG | + | chr1.1:56660984-56661003 | MS.gene52970:intron | 40.0% | |
TGTCTGTGAGTACTTATGTG+TGG | - | chr1.1:56662273-56662292 | None:intergenic | 40.0% | |
TTGACGAGATCCTTCTTCTT+AGG | - | chr1.1:56661284-56661303 | None:intergenic | 40.0% | |
TTTGCAGCTTGTAGTTCAAG+TGG | + | chr1.1:56661644-56661663 | MS.gene52970:intron | 40.0% | |
! | AGAAATTACGCAAATGGGCT+AGG | - | chr1.1:56661140-56661159 | None:intergenic | 40.0% |
!! | CAAATGGGCTAGGATGAAAA+TGG | - | chr1.1:56661130-56661149 | None:intergenic | 40.0% |
!! | GAAAATGGGTTACCCTAGTT+TGG | - | chr1.1:56661090-56661109 | None:intergenic | 40.0% |
!!! | CATGGATTGGCTTCTTTTTG+AGG | - | chr1.1:56662123-56662142 | None:intergenic | 40.0% |
ACAACGAGCTTGCCATAATC+TGG | - | chr1.1:56661049-56661068 | None:intergenic | 45.0% | |
AGGCCCTTAGTTGAGTATGT+AGG | + | chr1.1:56662342-56662361 | MS.gene52970:intron | 45.0% | |
GGCCCTTAGTTGAGTATGTA+GGG | + | chr1.1:56662343-56662362 | MS.gene52970:intron | 45.0% | |
TACTCAACTAAGGGCCTGTT+TGG | - | chr1.1:56662339-56662358 | None:intergenic | 45.0% | |
TTTCAATTTGTGCAGAGGGC+TGG | + | chr1.1:56662438-56662457 | MS.gene52970:intron | 45.0% | |
!! | CTCTTAAGTTGGGCCTTGTT+TGG | + | chr1.1:56661692-56661711 | MS.gene52970:intron | 45.0% |
!!! | TTTTAAGTTAGGGCCCTGCT+TGG | + | chr1.1:56661608-56661627 | MS.gene52970:intron | 45.0% |
ATTGGGGCTCTCTCCATATC+AGG | - | chr1.1:56661209-56661228 | None:intergenic | 50.0% | |
GAAGGATCTCGTCAAGGCTA+TGG | + | chr1.1:56661289-56661308 | MS.gene52970:CDS | 50.0% | |
!! | CTTTAGGGCCCGCTTGAATT+GGG | + | chr1.1:56661949-56661968 | MS.gene52970:intron | 50.0% |
!! | GGCAAGAACTTGCTAAGCTG+AGG | + | chr1.1:56662469-56662488 | MS.gene52970:CDS | 50.0% |
AAGTGGGAGAAGAGCTCCTG+GGG | + | chr1.1:56661463-56661482 | MS.gene52970:CDS | 55.0% | |
ACAAGTGGGAGAAGAGCTCC+TGG | + | chr1.1:56661461-56661480 | MS.gene52970:CDS | 55.0% | |
CAAGTGGGAGAAGAGCTCCT+GGG | + | chr1.1:56661462-56661481 | MS.gene52970:CDS | 55.0% | |
GTCAAGGCTATGGAAGCTGC+AGG | + | chr1.1:56661299-56661318 | MS.gene52970:CDS | 55.0% | |
!! | GCTTTAGGGCCCGCTTGAAT+TGG | + | chr1.1:56661948-56661967 | MS.gene52970:intron | 55.0% |
!! | TGCAGAGGGCTGGTGTTGTT+AGG | + | chr1.1:56662448-56662467 | MS.gene52970:intron | 55.0% |
GGGAGAAGAGCTCCTGGGGA+AGG | + | chr1.1:56661467-56661486 | MS.gene52970:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 56660910 | 56662506 | 56660910 | ID=MS.gene52970 |
chr1.1 | mRNA | 56660910 | 56662506 | 56660910 | ID=MS.gene52970.t1;Parent=MS.gene52970 |
chr1.1 | exon | 56660910 | 56660912 | 56660910 | ID=MS.gene52970.t1.exon1;Parent=MS.gene52970.t1 |
chr1.1 | CDS | 56660910 | 56660912 | 56660910 | ID=cds.MS.gene52970.t1;Parent=MS.gene52970.t1 |
chr1.1 | exon | 56660995 | 56661096 | 56660995 | ID=MS.gene52970.t1.exon2;Parent=MS.gene52970.t1 |
chr1.1 | CDS | 56660995 | 56661096 | 56660995 | ID=cds.MS.gene52970.t1;Parent=MS.gene52970.t1 |
chr1.1 | exon | 56661191 | 56661320 | 56661191 | ID=MS.gene52970.t1.exon3;Parent=MS.gene52970.t1 |
chr1.1 | CDS | 56661191 | 56661320 | 56661191 | ID=cds.MS.gene52970.t1;Parent=MS.gene52970.t1 |
chr1.1 | exon | 56661452 | 56661564 | 56661452 | ID=MS.gene52970.t1.exon4;Parent=MS.gene52970.t1 |
chr1.1 | CDS | 56661452 | 56661564 | 56661452 | ID=cds.MS.gene52970.t1;Parent=MS.gene52970.t1 |
chr1.1 | exon | 56662453 | 56662506 | 56662453 | ID=MS.gene52970.t1.exon5;Parent=MS.gene52970.t1 |
chr1.1 | CDS | 56662453 | 56662506 | 56662453 | ID=cds.MS.gene52970.t1;Parent=MS.gene52970.t1 |
Gene Sequence |
Protein sequence |