AlfalfaGEDB | MS.gene066034

M. sativa cultivar XinJiangDaYe / MS.gene066034

KEGG: K02875
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01929.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066034.t1	XP_003590835.1	99.2	133	1	0	1	133	1	133	5.60E-64	253.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066034.t1	P55844	91.0	133	12	0	1	133	1	133	2.2e-61	236.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066034.t1	G7I4V0	99.2	133	1	0	1	133	1	133	4.1e-64	253.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050277	MS.gene066034	0.811228	7.78E-51	-1.69E-46
MS.gene050290	MS.gene066034	0.870532	1.36E-66	-1.69E-46
MS.gene050320	MS.gene066034	0.817793	2.74E-52	-1.69E-46
MS.gene050574	MS.gene066034	0.822946	1.80E-53	-1.69E-46
MS.gene050916	MS.gene066034	0.859783	3.26E-63	-1.69E-46
MS.gene051330	MS.gene066034	0.837507	4.99E-57	-1.69E-46
MS.gene051746	MS.gene066034	0.844911	5.64E-59	-1.69E-46
MS.gene051748	MS.gene066034	0.842891	1.96E-58	-1.69E-46
MS.gene051756	MS.gene066034	0.804337	2.27E-49	-1.69E-46
MS.gene051850	MS.gene066034	0.80738	5.20E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene014197	MS.gene066034	PPI
MS.gene066034	MS.gene066035	PPI
MS.gene066034	MS.gene066761	PPI
MS.gene066034	MS.gene52972	PPI
MS.gene066034	MS.gene71415	PPI
MS.gene066034	MS.gene004833	PPI
MS.gene066034	MS.gene68733	PPI
MS.gene066034	MS.gene77100	PPI
MS.gene066034	MS.gene041630	PPI
MS.gene066034	MS.gene063084	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066034.t1	MTR_1g075720	99.248	133	1	0	1	133	1	133	2.34e-90	258
MS.gene066034.t1	MTR_4g120770	95.489	133	6	0	1	133	1	133	4.44e-89	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066034.t1	AT2G20450	84.962	133	20	0	1	133	1	133	7.52e-77	224
MS.gene066034.t1	AT4G27090	85.385	130	19	0	1	130	1	130	6.52e-76	221

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Find 39 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATCAATTTCCTTCCCC+AGG	0.448020	1.2:-58342885	None:intergenic
AAGTGGGAGAAGAGCTCCTG+GGG	0.619297	1.2:+58342869	MS.gene066034:CDS
AATTCTACCTGCAGCTTCCA+TGG	0.474519	1.2:-58342726	None:intergenic
AATTGATTGTTAAGAAGAGG+AGG	0.539799	1.2:+58342897	MS.gene066034:CDS
ACAACGAGCTTGCCATAATC+TGG	0.305463	1.2:-58342466	None:intergenic
ACAAGTGGGAGAAGAGCTCC+TGG	0.539704	1.2:+58342867	MS.gene066034:CDS
AGAGTTGCACTTGTCAACTA+TGG	0.476767	1.2:+58342442	MS.gene066034:CDS
ATCTCAACAAACCTCTTGAA+CGG	0.571035	1.2:-58342415	None:intergenic
ATGAAGTAATGCCTAAGCAG+CGG	0.686386	1.2:-58343701	None:intergenic
ATTGATTGTTAAGAAGAGGA+GGG	0.602431	1.2:+58342898	MS.gene066034:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGTATCTTCATAAGC+TGG	+	chr1.2:58343318-58343337	MS.gene066034:intron	30.0%
AATTGATTGTTAAGAAGAGG+AGG	+	chr1.2:58342897-58342916	MS.gene066034:CDS	30.0%
ATTGATTGTTAAGAAGAGGA+GGG	+	chr1.2:58342898-58342917	MS.gene066034:CDS	30.0%
CATAATTTCAATTTGTGCAG+AGG	+	chr1.2:58343638-58343657	MS.gene066034:intron	30.0%
GGAAATTGATTGTTAAGAAG+AGG	+	chr1.2:58342894-58342913	MS.gene066034:CDS	30.0%
GGTTGAAAATGGAAAAAGAT+TGG	-	chr1.2:58342539-58342558	None:intergenic	30.0%
TAATATTCATGAGCTTGTCA+AGG	-	chr1.2:58343358-58343377	None:intergenic	30.0%
TGATAGGTTCAAGATTATGT+TGG	+	chr1.2:58342937-58342956	MS.gene066034:CDS	30.0%
TGGAGCTTATTGTGTAAATT+TGG	+	chr1.2:58343133-58343152	MS.gene066034:intron	30.0%
AAACCCTATAAACTCAGCTA+AGG	-	chr1.2:58343557-58343576	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	58342330	58343711	58342330	ID=MS.gene066034
chr1.2	mRNA	58342330	58343711	58342330	ID=MS.gene066034.t1;Parent=MS.gene066034
chr1.2	exon	58342330	58342332	58342330	ID=MS.gene066034.t1.exon1;Parent=MS.gene066034.t1
chr1.2	CDS	58342330	58342332	58342330	ID=cds.MS.gene066034.t1;Parent=MS.gene066034.t1
chr1.2	exon	58342415	58342516	58342415	ID=MS.gene066034.t1.exon2;Parent=MS.gene066034.t1
chr1.2	CDS	58342415	58342516	58342415	ID=cds.MS.gene066034.t1;Parent=MS.gene066034.t1
chr1.2	exon	58342611	58342740	58342611	ID=MS.gene066034.t1.exon3;Parent=MS.gene066034.t1
chr1.2	CDS	58342611	58342740	58342611	ID=cds.MS.gene066034.t1;Parent=MS.gene066034.t1
chr1.2	exon	58342858	58342970	58342858	ID=MS.gene066034.t1.exon4;Parent=MS.gene066034.t1
chr1.2	CDS	58342858	58342970	58342858	ID=cds.MS.gene066034.t1;Parent=MS.gene066034.t1
chr1.2	exon	58343658	58343711	58343658	ID=MS.gene066034.t1.exon5;Parent=MS.gene066034.t1
chr1.2	CDS	58343658	58343711	58343658	ID=cds.MS.gene066034.t1;Parent=MS.gene066034.t1

Gene Sequence

>MS.gene066034

ATGGTGAATCACATTTCTCTGTTCATCTTTGTCTCAATTCCATTTCTTAATCTTTCTCTAATCTCACTGTGTGTTCTTTGTTCAGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGTAACCCATTTTCAAATTTCCAATCTTTTTCCATTTTCAACCTAGCCCATTTGCGTAATTTCTCAAAAATGTTTGTGATTTGTTTGTTTTGCAGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAAGCCATGGAAGCTGCAGGTAGAATTTCTTCTATTAACCTATCTATGTATTTATTTTTGTTTTTGTTTTCATATTTTGTTTGTTGAAATTGGATTTTTTTTTTTTGTGGTAATTGGTTTTGTTTGAATTTGATAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTGTTAAGAAGAGGAGGGCTGCCCTTAATGATTTTGATAGGTTCAAGATTATGTTGGCCAAGATTAAGGTATAATTTTAGTTGCTGTTTTTTGTTTTCTGTTGTGAAATGCTTTTTAGTTAGGCCTTGTTTGGTTAAATAACTTAATTAGGCTTTTAGTGTAGTTGGCTATTATAGAAGCTGTTGTGAAATGCTTTTAAGTTAGGCCCTGTTTGGATAAATAACTTAACTTGGAGCTTATTGTGTAAATTTGGTTATTATACGAGCTGTTATGGATGAGCTGTTTCTATCGCACAAGATAAAATGAAGTCAAATTGTTTTTGTATAAGCTTTAGGGTCCGTTTGGATTAACTTATGAAAAATAGCTTATGCGAACATATATGCTTTGAACTTAATTCATAAGTTCTCACTAACAAAAAGTTGTATCTTCATAAGCTGGTTTTTCATAGACTTCCTTGACAAGCTCATGAATATTACATAATTTTTTTTTATTTGTATAAAGCTCAAAGAGAAGCCAATCTGAACAGACTTAATCTGTTTCTTAAGTTATTTGGAGAACTTGTCAAATGAACCATTTAACAATTTTTGAACATACCACACATAAGTTTCAAGTTGGTAGTTGATAAGCTAAAAGAAGCCAATCCAAACAAGCCCTTAGCTGAGTTTATAGGGTTTGATTCTGTTTTTTCAAATTGTGTTTTGGTTGTATTCATTCTTATGTAGTGTTGACGACGATCATAATTTCAATTTGTGCAGAGGGCTGGTGTTGTTAGGCAAGAACTTGCTAAGCTGAGGAAGACCGCTGCTTAG

Protein sequence

>MS.gene066034.t1

MPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRFKIMLAKIKRAGVVRQELAKLRKTAA