Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066035.t1 | XP_003590835.1 | 99.2 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 5.60E-64 | 253.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066035.t1 | P55844 | 91.0 | 133 | 12 | 0 | 1 | 133 | 1 | 133 | 2.2e-61 | 236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066035.t1 | G7I4V0 | 99.2 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 4.1e-64 | 253.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene066035 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene049756 | MS.gene066035 | 0.803049 | 4.20E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene066035 | 0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene050277 | MS.gene066035 | 0.860311 | 2.26E-63 | -1.69E-46 |
| MS.gene050290 | MS.gene066035 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene050317 | MS.gene066035 | 0.804854 | 1.77E-49 | -1.69E-46 |
| MS.gene050320 | MS.gene066035 | 0.869163 | 3.80E-66 | -1.69E-46 |
| MS.gene050752 | MS.gene066035 | 0.800744 | 1.25E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene066035 | 0.841407 | 4.84E-58 | -1.69E-46 |
| MS.gene050916 | MS.gene066035 | 0.830962 | 2.19E-55 | -1.69E-46 |
| MS.gene051063 | MS.gene066035 | 0.841961 | 3.46E-58 | -1.69E-46 |
| MS.gene051245 | MS.gene066035 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene051330 | MS.gene066035 | 0.859429 | 4.16E-63 | -1.69E-46 |
| MS.gene051451 | MS.gene066035 | 0.831867 | 1.31E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene066035 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene066035 | 0.900356 | 7.95E-78 | -1.69E-46 |
| MS.gene051748 | MS.gene066035 | 0.905738 | 3.12E-80 | -1.69E-46 |
| MS.gene051756 | MS.gene066035 | 0.86077 | 1.64E-63 | -1.69E-46 |
| MS.gene051757 | MS.gene066035 | 0.809082 | 2.26E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene066035 | 0.824776 | 6.72E-54 | -1.69E-46 |
| MS.gene05188 | MS.gene066035 | 0.842051 | 3.27E-58 | -1.69E-46 |
| MS.gene051903 | MS.gene066035 | 0.92579 | 1.14E-90 | -1.69E-46 |
| MS.gene051975 | MS.gene066035 | 0.835992 | 1.21E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene066035 | 0.810612 | 1.06E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene066035 | 0.815805 | 7.66E-52 | -1.69E-46 |
| MS.gene052818 | MS.gene066035 | -0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene066035 | 0.867923 | 9.56E-66 | -1.69E-46 |
| MS.gene053109 | MS.gene066035 | 0.871154 | 8.49E-67 | -1.69E-46 |
| MS.gene053381 | MS.gene066035 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene066035 | 0.875137 | 3.90E-68 | -1.69E-46 |
| MS.gene054403 | MS.gene066035 | 0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene05469 | MS.gene066035 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene054937 | MS.gene066035 | 0.814218 | 1.72E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene066035 | 0.824082 | 9.79E-54 | -1.69E-46 |
| MS.gene055441 | MS.gene066035 | 0.805608 | 1.23E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene066035 | -0.800484 | 1.41E-48 | -1.69E-46 |
| MS.gene055603 | MS.gene066035 | 0.852915 | 3.37E-61 | -1.69E-46 |
| MS.gene055780 | MS.gene066035 | 0.808877 | 2.50E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene066035 | 0.819405 | 1.18E-52 | -1.69E-46 |
| MS.gene056075 | MS.gene066035 | 0.829675 | 4.51E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene066035 | 0.84693 | 1.59E-59 | -1.69E-46 |
| MS.gene056403 | MS.gene066035 | 0.860224 | 2.40E-63 | -1.69E-46 |
| MS.gene056432 | MS.gene066035 | 0.81143 | 7.03E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene066035 | 0.865998 | 3.93E-65 | -1.69E-46 |
| MS.gene056631 | MS.gene066035 | 0.886284 | 3.91E-72 | -1.69E-46 |
| MS.gene056896 | MS.gene066035 | 0.84484 | 5.89E-59 | -1.69E-46 |
| MS.gene056986 | MS.gene066035 | 0.859354 | 4.38E-63 | -1.69E-46 |
| MS.gene057094 | MS.gene066035 | 0.928582 | 2.35E-92 | -1.69E-46 |
| MS.gene057140 | MS.gene066035 | 0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene066035 | 0.843806 | 1.12E-58 | -1.69E-46 |
| MS.gene05781 | MS.gene066035 | 0.80952 | 1.82E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene066035 | 0.833304 | 5.76E-56 | -1.69E-46 |
| MS.gene058055 | MS.gene066035 | 0.804222 | 2.40E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene066035 | 0.874449 | 6.70E-68 | -1.69E-46 |
| MS.gene058906 | MS.gene066035 | 0.851423 | 8.96E-61 | -1.69E-46 |
| MS.gene058911 | MS.gene066035 | 0.817174 | 3.78E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene066035 | 0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene059830 | MS.gene066035 | 0.806231 | 9.09E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene066035 | 0.811103 | 8.28E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene066035 | 0.925323 | 2.14E-90 | -1.69E-46 |
| MS.gene06011 | MS.gene066035 | 0.892553 | 1.43E-74 | -1.69E-46 |
| MS.gene060429 | MS.gene066035 | 0.828943 | 6.79E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene066035 | 0.845299 | 4.43E-59 | -1.69E-46 |
| MS.gene060763 | MS.gene066035 | 0.842939 | 1.90E-58 | -1.69E-46 |
| MS.gene060830 | MS.gene066035 | 0.856359 | 3.39E-62 | -1.69E-46 |
| MS.gene061145 | MS.gene066035 | 0.825648 | 4.18E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063084 | MS.gene066035 | PPI |
| MS.gene52970 | MS.gene066035 | PPI |
| MS.gene066034 | MS.gene066035 | PPI |
| MS.gene014197 | MS.gene066035 | PPI |
| MS.gene68733 | MS.gene066035 | PPI |
| MS.gene004833 | MS.gene066035 | PPI |
| MS.gene52972 | MS.gene066035 | PPI |
| MS.gene066761 | MS.gene066035 | PPI |
| MS.gene71415 | MS.gene066035 | PPI |
| MS.gene066035 | MS.gene041630 | PPI |
| MS.gene77100 | MS.gene066035 | PPI |
| MS.gene68134 | MS.gene066035 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066035.t1 | MTR_1g075720 | 99.248 | 133 | 1 | 0 | 1 | 133 | 1 | 133 | 2.34e-90 | 258 |
| MS.gene066035.t1 | MTR_4g120770 | 95.489 | 133 | 6 | 0 | 1 | 133 | 1 | 133 | 4.44e-89 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066035.t1 | AT2G20450 | 84.962 | 133 | 20 | 0 | 1 | 133 | 1 | 133 | 7.52e-77 | 224 |
| MS.gene066035.t1 | AT4G27090 | 85.385 | 130 | 19 | 0 | 1 | 130 | 1 | 130 | 6.52e-76 | 221 |
Find 38 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTATCAAAATCATTA+AGG | 0.237759 | 1.2:-58370588 | None:intergenic |
| TTGACGAGATCCTTCTTCTT+AGG | 0.248112 | 1.2:-58370363 | None:intergenic |
| GATTATGTTGGCCAAGATTA+AGG | 0.263288 | 1.2:+58370612 | MS.gene066035:CDS |
| GTCAACTATGGTCCAGATTA+TGG | 0.285686 | 1.2:+58370115 | MS.gene066035:CDS |
| GAAAATGGGTTACCCTAGTT+TGG | 0.329740 | 1.2:-58370168 | None:intergenic |
| GAAAGCCTCTTGAAATTGAT+TGG | 0.348542 | 1.2:-58370306 | None:intergenic |
| ACAACAAGCTTGCCATAATC+TGG | 0.353003 | 1.2:-58370127 | None:intergenic |
| CTAAAATTATACCTTAATCT+TGG | 0.381940 | 1.2:-58370623 | None:intergenic |
| TGCAGAGGGCTGGTGTTGTT+AGG | 0.431787 | 1.2:+58371341 | MS.gene066035:intron |
| TTGATGTTATCGACCAAACT+AGG | 0.433748 | 1.2:+58370155 | MS.gene066035:CDS |
| GAACCTATCAAAATCATTAA+GGG | 0.440003 | 1.2:-58370587 | None:intergenic |
| AACAATCAATTTCCTTCCCC+AGG | 0.448020 | 1.2:-58370548 | None:intergenic |
| ATTGGAGCTCTCTCCATGTC+AGG | 0.463357 | 1.2:-58370288 | None:intergenic |
| AGAGTTGCACTTGTCAACTA+TGG | 0.467898 | 1.2:+58370103 | MS.gene066035:CDS |
| AATTCTACCTGCAGCTTCCA+TGG | 0.474519 | 1.2:-58370388 | None:intergenic |
| GTTGAGGAAGACCGCAGCTT+AGG | 0.482197 | 1.2:+58371378 | MS.gene066035:CDS |
| TTTCAATTTGTGCAGAGGGC+TGG | 0.483986 | 1.2:+58371331 | MS.gene066035:intron |
| GGAAATTGATTGTTAAGAAG+AGG | 0.493248 | 1.2:+58370557 | MS.gene066035:CDS |
| TTCAAGAGGTTTGTTGAGAT+CGG | 0.494020 | 1.2:+58370079 | MS.gene066035:CDS |
| CAAGAGAGTTCCTAAGAAGA+AGG | 0.504705 | 1.2:+58370353 | MS.gene066035:CDS |
| GGCAAGAACTTGCTAAGTTG+AGG | 0.522233 | 1.2:+58371362 | MS.gene066035:CDS |
| ACAAGTGGGAGAAGAGCTCC+TGG | 0.539704 | 1.2:+58370530 | MS.gene066035:CDS |
| AATTGATTGTTAAGAAGAGG+AGG | 0.539799 | 1.2:+58370560 | MS.gene066035:CDS |
| TGATAGGTTCAAGATTATGT+TGG | 0.542816 | 1.2:+58370600 | MS.gene066035:CDS |
| TGATAGATGTGAAGAACAAG+TGG | 0.562094 | 1.2:+58370515 | MS.gene066035:intron |
| GTCAAAGCCATGGAAGCTGC+AGG | 0.563654 | 1.2:+58370381 | MS.gene066035:CDS |
| ATCTCAACAAACCTCTTGAA+CGG | 0.571035 | 1.2:-58370076 | None:intergenic |
| GAAGGATCTCGTCAAAGCCA+TGG | 0.572972 | 1.2:+58370371 | MS.gene066035:CDS |
| GAGCTCCAATCAATTTCAAG+AGG | 0.584468 | 1.2:+58370301 | MS.gene066035:CDS |
| GGGAGAAGAGCTCCTGGGGA+AGG | 0.586483 | 1.2:+58370536 | MS.gene066035:CDS |
| TCTTTGTTCAGCCGTTCAAG+AGG | 0.591089 | 1.2:+58370065 | MS.gene066035:intron |
| TCTTGTTGATGCACCTGACA+TGG | 0.596389 | 1.2:+58370275 | MS.gene066035:CDS |
| ATTGATTGTTAAGAAGAGGA+GGG | 0.602431 | 1.2:+58370561 | MS.gene066035:CDS |
| TGATGTTATCGACCAAACTA+GGG | 0.607546 | 1.2:+58370156 | MS.gene066035:CDS |
| AAGTGGGAGAAGAGCTCCTG+GGG | 0.619297 | 1.2:+58370532 | MS.gene066035:CDS |
| GATAGATGTGAAGAACAAGT+GGG | 0.623335 | 1.2:+58370516 | MS.gene066035:intron |
| CAAGTGGGAGAAGAGCTCCT+GGG | 0.641380 | 1.2:+58370531 | MS.gene066035:CDS |
| ATGAAGTAATGCCTAAGCTG+CGG | 0.676586 | 1.2:-58371389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTTTTTTTTTG+TGG | + | chr1.2:58370472-58370491 | MS.gene066035:intron | 10.0% |
| !! | ACAAAAATAAATACATAGAT+AGG | - | chr1.2:58370425-58370444 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGTGGTAAT+TGG | + | chr1.2:58370479-58370498 | MS.gene066035:intron | 15.0% |
| !! | AAAGATTGGAAATTTGAAAA+TGG | - | chr1.2:58370186-58370205 | None:intergenic | 20.0% |
| !! | AAGATTGGAAATTTGAAAAT+GGG | - | chr1.2:58370185-58370204 | None:intergenic | 20.0% |
| !! | ATTAGAGAAAGATTAAGAAA+TGG | - | chr1.2:58370033-58370052 | None:intergenic | 20.0% |
| !! | CTAAAATTATACCTTAATCT+TGG | - | chr1.2:58370626-58370645 | None:intergenic | 20.0% |
| !! | TTAAGTTATTTATCCAAACA+AGG | - | chr1.2:58370777-58370796 | None:intergenic | 20.0% |
| !!! | ATTGTATTTCTATAAGCTTT+AGG | + | chr1.2:58370880-58370899 | MS.gene066035:intron | 20.0% |
| !!! | TTGTATTTCTATAAGCTTTA+GGG | + | chr1.2:58370881-58370900 | MS.gene066035:intron | 20.0% |
| !!! | TTTTCAGAAATTAAGCAAAT+GGG | - | chr1.2:58370226-58370245 | None:intergenic | 20.0% |
| !!! | TTTTTCAGAAATTAAGCAAA+TGG | - | chr1.2:58370227-58370246 | None:intergenic | 20.0% |
| ! | CAAGTTTGTCTATGAAAAAA+CGG | - | chr1.2:58371004-58371023 | None:intergenic | 25.0% |
| ! | GAACCTATCAAAATCATTAA+GGG | - | chr1.2:58370590-58370609 | None:intergenic | 25.0% |
| ! | GGTTATTATATAAGCTGTTA+TGG | + | chr1.2:58370820-58370839 | MS.gene066035:intron | 25.0% |
| ! | TAAAATAAGCTAATCCAAAC+AGG | + | chr1.2:58371215-58371234 | MS.gene066035:intron | 25.0% |
| ! | TAAAATATTAAGGGTCTGTT+TGG | - | chr1.2:58371088-58371107 | None:intergenic | 25.0% |
| ! | TAAATTTCAATTTGTGCAGA+GGG | + | chr1.2:58371327-58371346 | MS.gene066035:intron | 25.0% |
| ! | TGAACCTATCAAAATCATTA+AGG | - | chr1.2:58370591-58370610 | None:intergenic | 25.0% |
| ! | TTAAATTTCAATTTGTGCAG+AGG | + | chr1.2:58371326-58371345 | MS.gene066035:intron | 25.0% |
| !! | TTGCATTTTATAGTGTAAGT+GGG | + | chr1.2:58370798-58370817 | MS.gene066035:intron | 25.0% |
| !! | TTTGCATTTTATAGTGTAAG+TGG | + | chr1.2:58370797-58370816 | MS.gene066035:intron | 25.0% |
| !!! | TGTGAAATGATTTTAAGTCA+GGG | + | chr1.2:58370667-58370686 | MS.gene066035:intron | 25.0% |
| !!! | TTGTGAAATGATTTTAAGTC+AGG | + | chr1.2:58370666-58370685 | MS.gene066035:intron | 25.0% |
| !!! | TTGTTTTTCAAATTGTGTCT+AGG | + | chr1.2:58371266-58371285 | MS.gene066035:intron | 25.0% |
| AATTGATTGTTAAGAAGAGG+AGG | + | chr1.2:58370560-58370579 | MS.gene066035:CDS | 30.0% | |
| ATGGAGATACAATGTTTGTT+AGG | - | chr1.2:58370978-58370997 | None:intergenic | 30.0% | |
| ATTGATTGTTAAGAAGAGGA+GGG | + | chr1.2:58370561-58370580 | MS.gene066035:CDS | 30.0% | |
| GGAAATTGATTGTTAAGAAG+AGG | + | chr1.2:58370557-58370576 | MS.gene066035:CDS | 30.0% | |
| GGATGAAAATGGAAAAAGAT+TGG | - | chr1.2:58370200-58370219 | None:intergenic | 30.0% | |
| TGATAGGTTCAAGATTATGT+TGG | + | chr1.2:58370600-58370619 | MS.gene066035:CDS | 30.0% | |
| TTGTGAAATGCTCTTAAGTT+GGG | + | chr1.2:58370751-58370770 | MS.gene066035:intron | 30.0% | |
| ! | TGCATTTTATAGTGTAAGTG+GGG | + | chr1.2:58370799-58370818 | MS.gene066035:intron | 30.0% |
| ! | TGGAGATACAATGTTTGTTA+GGG | - | chr1.2:58370977-58370996 | None:intergenic | 30.0% |
| !!! | TTGTGATTTGTTTGTTTTGC+AGG | + | chr1.2:58370251-58370270 | MS.gene066035:intron | 30.0% |
| AAACCCTACATACTCAACTA+AGG | - | chr1.2:58371242-58371261 | None:intergenic | 35.0% | |
| AACCCTACATACTCAACTAA+GGG | - | chr1.2:58371241-58371260 | None:intergenic | 35.0% | |
| ATCTCAACAAACCTCTTGAA+CGG | - | chr1.2:58370079-58370098 | None:intergenic | 35.0% | |
| GAAAGCCTCTTGAAATTGAT+TGG | - | chr1.2:58370309-58370328 | None:intergenic | 35.0% | |
| GATAGATGTGAAGAACAAGT+GGG | + | chr1.2:58370516-58370535 | MS.gene066035:intron | 35.0% | |
| GATTATGTTGGCCAAGATTA+AGG | + | chr1.2:58370612-58370631 | MS.gene066035:CDS | 35.0% | |
| GTCTATGAAAAAACGGCTTA+TGG | - | chr1.2:58370997-58371016 | None:intergenic | 35.0% | |
| GTTGTGAAATGCTCTTAAGT+TGG | + | chr1.2:58370750-58370769 | MS.gene066035:intron | 35.0% | |
| TATTAAGGGTCTGTTTGGAT+TGG | - | chr1.2:58371083-58371102 | None:intergenic | 35.0% | |
| TGATAGATGTGAAGAACAAG+TGG | + | chr1.2:58370515-58370534 | MS.gene066035:intron | 35.0% | |
| TGATGTTATCGACCAAACTA+GGG | + | chr1.2:58370156-58370175 | MS.gene066035:CDS | 35.0% | |
| TTCTCATAACCCAATTCAAG+CGG | - | chr1.2:58370908-58370927 | None:intergenic | 35.0% | |
| TTGATGTTATCGACCAAACT+AGG | + | chr1.2:58370155-58370174 | MS.gene066035:CDS | 35.0% | |
| ! | AGAAATTAAGCAAATGGGCT+AGG | - | chr1.2:58370221-58370240 | None:intergenic | 35.0% |
| ! | ATTAAGTTGTCTATCCAAGC+AGG | - | chr1.2:58370694-58370713 | None:intergenic | 35.0% |
| ! | TTAAGTTGTCTATCCAAGCA+GGG | - | chr1.2:58370693-58370712 | None:intergenic | 35.0% |
| !! | CTGCCCTTAATGATTTTGAT+AGG | + | chr1.2:58370584-58370603 | MS.gene066035:CDS | 35.0% |
| !! | TTCAAGAGGTTTGTTGAGAT+CGG | + | chr1.2:58370079-58370098 | MS.gene066035:CDS | 35.0% |
| !!! | TTTGGATTGGCTTCTTTTTG+AGG | - | chr1.2:58371070-58371089 | None:intergenic | 35.0% |
| AACAATCAATTTCCTTCCCC+AGG | - | chr1.2:58370551-58370570 | None:intergenic | 40.0% | |
| ACAACAAGCTTGCCATAATC+TGG | - | chr1.2:58370130-58370149 | None:intergenic | 40.0% | |
| AGAGTTGCACTTGTCAACTA+TGG | + | chr1.2:58370103-58370122 | MS.gene066035:CDS | 40.0% | |
| CAAGAGAGTTCCTAAGAAGA+AGG | + | chr1.2:58370353-58370372 | MS.gene066035:CDS | 40.0% | |
| GAGCTCCAATCAATTTCAAG+AGG | + | chr1.2:58370301-58370320 | MS.gene066035:CDS | 40.0% | |
| GTCAACTATGGTCCAGATTA+TGG | + | chr1.2:58370115-58370134 | MS.gene066035:CDS | 40.0% | |
| TCTCATAACCCAATTCAAGC+GGG | - | chr1.2:58370907-58370926 | None:intergenic | 40.0% | |
| TGTCTGTGAGTACTTATGTG+TGG | - | chr1.2:58371166-58371185 | None:intergenic | 40.0% | |
| TTGACGAGATCCTTCTTCTT+AGG | - | chr1.2:58370366-58370385 | None:intergenic | 40.0% | |
| TTTGCAGCTTGTAGTTCAAG+TGG | + | chr1.2:58370713-58370732 | MS.gene066035:intron | 40.0% | |
| !! | CAAATGGGCTAGGATGAAAA+TGG | - | chr1.2:58370211-58370230 | None:intergenic | 40.0% |
| !! | GAAAATGGGTTACCCTAGTT+TGG | - | chr1.2:58370171-58370190 | None:intergenic | 40.0% |
| AATTCTACCTGCAGCTTCCA+TGG | - | chr1.2:58370391-58370410 | None:intergenic | 45.0% | |
| AGGCCCTTAGTTGAGTATGT+AGG | + | chr1.2:58371235-58371254 | MS.gene066035:intron | 45.0% | |
| GGCCCTTAGTTGAGTATGTA+GGG | + | chr1.2:58371236-58371255 | MS.gene066035:intron | 45.0% | |
| TACTCAACTAAGGGCCTGTT+TGG | - | chr1.2:58371232-58371251 | None:intergenic | 45.0% | |
| TCTTGTTGATGCACCTGACA+TGG | + | chr1.2:58370275-58370294 | MS.gene066035:CDS | 45.0% | |
| TCTTTGTTCAGCCGTTCAAG+AGG | + | chr1.2:58370065-58370084 | MS.gene066035:intron | 45.0% | |
| TTTCAATTTGTGCAGAGGGC+TGG | + | chr1.2:58371331-58371350 | MS.gene066035:intron | 45.0% | |
| ! | CAGACAGTCTTGCATGCTTT+TGG | + | chr1.2:58371180-58371199 | MS.gene066035:intron | 45.0% |
| !! | CTCTTAAGTTGGGCCTTGTT+TGG | + | chr1.2:58370761-58370780 | MS.gene066035:intron | 45.0% |
| !! | GGCAAGAACTTGCTAAGTTG+AGG | + | chr1.2:58371362-58371381 | MS.gene066035:CDS | 45.0% |
| !!! | AATTTTATGATAAAATATTA+AGG | - | chr1.2:58371098-58371117 | None:intergenic | 5.0% |
| !!! | ATTTTATGATAAAATATTAA+GGG | - | chr1.2:58371097-58371116 | None:intergenic | 5.0% |
| !!! | TAATATTTTATCATAAAATT+TGG | + | chr1.2:58371098-58371117 | MS.gene066035:intron | 5.0% |
| ATTGGAGCTCTCTCCATGTC+AGG | - | chr1.2:58370291-58370310 | None:intergenic | 50.0% | |
| GAAGGATCTCGTCAAAGCCA+TGG | + | chr1.2:58370371-58370390 | MS.gene066035:CDS | 50.0% | |
| !! | CTTTAGGGCCCGCTTGAATT+GGG | + | chr1.2:58370896-58370915 | MS.gene066035:intron | 50.0% |
| !! | TTTTAAGTCAGGGCCCTGCT+TGG | + | chr1.2:58370677-58370696 | MS.gene066035:intron | 50.0% |
| AAGTGGGAGAAGAGCTCCTG+GGG | + | chr1.2:58370532-58370551 | MS.gene066035:CDS | 55.0% | |
| ACAAGTGGGAGAAGAGCTCC+TGG | + | chr1.2:58370530-58370549 | MS.gene066035:CDS | 55.0% | |
| CAAGTGGGAGAAGAGCTCCT+GGG | + | chr1.2:58370531-58370550 | MS.gene066035:CDS | 55.0% | |
| GTCAAAGCCATGGAAGCTGC+AGG | + | chr1.2:58370381-58370400 | MS.gene066035:CDS | 55.0% | |
| !! | GCTTTAGGGCCCGCTTGAAT+TGG | + | chr1.2:58370895-58370914 | MS.gene066035:intron | 55.0% |
| !! | TGCAGAGGGCTGGTGTTGTT+AGG | + | chr1.2:58371341-58371360 | MS.gene066035:intron | 55.0% |
| GGGAGAAGAGCTCCTGGGGA+AGG | + | chr1.2:58370536-58370555 | MS.gene066035:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 58369991 | 58371399 | 58369991 | ID=MS.gene066035 |
| chr1.2 | mRNA | 58369991 | 58371399 | 58369991 | ID=MS.gene066035.t1;Parent=MS.gene066035 |
| chr1.2 | exon | 58369991 | 58369993 | 58369991 | ID=MS.gene066035.t1.exon1;Parent=MS.gene066035.t1 |
| chr1.2 | CDS | 58369991 | 58369993 | 58369991 | ID=cds.MS.gene066035.t1;Parent=MS.gene066035.t1 |
| chr1.2 | exon | 58370076 | 58370177 | 58370076 | ID=MS.gene066035.t1.exon2;Parent=MS.gene066035.t1 |
| chr1.2 | CDS | 58370076 | 58370177 | 58370076 | ID=cds.MS.gene066035.t1;Parent=MS.gene066035.t1 |
| chr1.2 | exon | 58370273 | 58370402 | 58370273 | ID=MS.gene066035.t1.exon3;Parent=MS.gene066035.t1 |
| chr1.2 | CDS | 58370273 | 58370402 | 58370273 | ID=cds.MS.gene066035.t1;Parent=MS.gene066035.t1 |
| chr1.2 | exon | 58370521 | 58370633 | 58370521 | ID=MS.gene066035.t1.exon4;Parent=MS.gene066035.t1 |
| chr1.2 | CDS | 58370521 | 58370633 | 58370521 | ID=cds.MS.gene066035.t1;Parent=MS.gene066035.t1 |
| chr1.2 | exon | 58371346 | 58371399 | 58371346 | ID=MS.gene066035.t1.exon5;Parent=MS.gene066035.t1 |
| chr1.2 | CDS | 58371346 | 58371399 | 58371346 | ID=cds.MS.gene066035.t1;Parent=MS.gene066035.t1 |
| Gene Sequence |
| Protein sequence |
