Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53281.t1 | XP_003598052.1 | 93.2 | 190 | 7 | 1 | 1 | 190 | 140 | 323 | 7.20E-97 | 363.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53281.t1 | G7J060 | 93.2 | 190 | 7 | 1 | 1 | 190 | 140 | 323 | 5.2e-97 | 363.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050397 | MS.gene53281 | 0.802949 | 4.40E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene53281 | 0.813791 | 2.14E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene53281 | 0.801237 | 9.90E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene53281 | 0.833461 | 5.26E-56 | -1.69E-46 |
| MS.gene051171 | MS.gene53281 | 0.855101 | 7.90E-62 | -1.69E-46 |
| MS.gene051240 | MS.gene53281 | 0.841912 | 3.56E-58 | -1.69E-46 |
| MS.gene051242 | MS.gene53281 | 0.858943 | 5.82E-63 | -1.69E-46 |
| MS.gene051244 | MS.gene53281 | 0.828273 | 9.85E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene53281 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene53281 | -0.80938 | 1.95E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene53281 | 0.860773 | 1.63E-63 | -1.69E-46 |
| MS.gene053907 | MS.gene53281 | 0.815988 | 6.97E-52 | -1.69E-46 |
| MS.gene053971 | MS.gene53281 | 0.886474 | 3.31E-72 | -1.69E-46 |
| MS.gene055370 | MS.gene53281 | 0.823332 | 1.47E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene53281 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene056305 | MS.gene53281 | 0.812251 | 4.66E-51 | -1.69E-46 |
| MS.gene056451 | MS.gene53281 | 0.807297 | 5.42E-50 | -1.69E-46 |
| MS.gene056633 | MS.gene53281 | 0.888379 | 6.22E-73 | -1.69E-46 |
| MS.gene056664 | MS.gene53281 | 0.815689 | 8.13E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene53281 | 0.806208 | 9.20E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene53281 | 0.854967 | 8.65E-62 | -1.69E-46 |
| MS.gene058276 | MS.gene53281 | 0.826262 | 2.99E-54 | -1.69E-46 |
| MS.gene058746 | MS.gene53281 | 0.89179 | 2.88E-74 | -1.69E-46 |
| MS.gene059512 | MS.gene53281 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene53281 | 0.811119 | 8.21E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53281.t1 | MTR_3g005720 | 93.158 | 190 | 7 | 1 | 1 | 190 | 140 | 323 | 6.58e-128 | 362 |
| MS.gene53281.t1 | MTR_1g059970 | 39.247 | 186 | 99 | 5 | 4 | 186 | 158 | 332 | 5.04e-36 | 128 |
| MS.gene53281.t1 | MTR_1g059970 | 42.336 | 137 | 65 | 5 | 4 | 137 | 160 | 285 | 6.27e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53281.t1 | AT4G10000 | 70.588 | 187 | 49 | 1 | 1 | 187 | 149 | 329 | 2.83e-95 | 280 |
| MS.gene53281.t1 | AT4G10000 | 70.588 | 187 | 49 | 1 | 1 | 187 | 149 | 329 | 2.83e-95 | 280 |
| MS.gene53281.t1 | AT5G03880 | 42.162 | 185 | 97 | 4 | 4 | 187 | 164 | 339 | 4.56e-42 | 144 |
Find 45 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATAAATTCTTACTTCTT+TGG | 0.175708 | 3.2:+627150 | None:intergenic |
| TGACATTGTGGGAACGTTCT+AGG | 0.276954 | 3.2:-627853 | MS.gene53281:CDS |
| GAGAACAGCTCCAGCTTTCT+AGG | 0.290385 | 3.2:+627818 | None:intergenic |
| AAGTTACTCTTGGATGCTTC+TGG | 0.294502 | 3.2:-627175 | MS.gene53281:CDS |
| CTGTGTCTTACAGAACCTTT+AGG | 0.352920 | 3.2:+628993 | None:intergenic |
| GAATAGGTTTCGAACAAATA+AGG | 0.364256 | 3.2:+626664 | None:intergenic |
| TAGGTTTATCCTTGTCCTAA+AGG | 0.380454 | 3.2:-629008 | MS.gene53281:CDS |
| CTATAAATTATCCGACGAAT+AGG | 0.383781 | 3.2:+626648 | None:intergenic |
| AAATACTTGTTCGAGCGATA+TGG | 0.384640 | 3.2:-628054 | MS.gene53281:CDS |
| AGAGAGGTGGTCAGAGAAAC+TGG | 0.386180 | 3.2:-628972 | MS.gene53281:CDS |
| CTACCTGCTCGTAGAATTGT+TGG | 0.397799 | 3.2:+627881 | None:intergenic |
| TTCCTCATTGATCAAAATAG+TGG | 0.408697 | 3.2:-628294 | MS.gene53281:CDS |
| TTACTTACTGCTTTCATACA+TGG | 0.414336 | 3.2:+628266 | None:intergenic |
| CACAACACTGGATTTCAATC+TGG | 0.442131 | 3.2:-626706 | MS.gene53281:CDS |
| CCTTACATTCTTCAAAATGT+AGG | 0.449859 | 3.2:-627217 | MS.gene53281:CDS |
| AGAAGGGAGAAGTCCATCAT+TGG | 0.461743 | 3.2:-628031 | MS.gene53281:CDS |
| GCGTGAGGCATTATGCGAAT+TGG | 0.471814 | 3.2:-627245 | MS.gene53281:CDS |
| GACATTGTGGGAACGTTCTA+GGG | 0.479537 | 3.2:-627852 | MS.gene53281:CDS |
| AGCTCCAGCTTTCTAGGAGG+AGG | 0.503068 | 3.2:+627824 | None:intergenic |
| CTCTCTAAAAGTCCCAATGA+TGG | 0.508740 | 3.2:+628018 | None:intergenic |
| GAAGGGAGAAGTCCATCATT+GGG | 0.519221 | 3.2:-628030 | MS.gene53281:CDS |
| TACTTTGTTGATCACAACAC+TGG | 0.521271 | 3.2:-626718 | MS.gene53281:CDS |
| ACGACGAACGAAGTTACTCT+TGG | 0.522523 | 3.2:-627185 | MS.gene53281:CDS |
| ATTCTTCAAAATGTAGGAGA+AGG | 0.523180 | 3.2:-627211 | MS.gene53281:CDS |
| TGAACCTCCTCCTAGAAAGC+TGG | 0.527393 | 3.2:-627828 | MS.gene53281:CDS |
| GTGTTGTGATCAACAAAGTA+AGG | 0.529816 | 3.2:+626721 | None:intergenic |
| TTGTTCGAGCGATATGGAGA+AGG | 0.531686 | 3.2:-628048 | MS.gene53281:CDS |
| TTGCGCAGCACTATCTTCAC+TGG | 0.541182 | 3.2:-627911 | MS.gene53281:intron |
| ACAATTCTACGAGCAGGTAG+AGG | 0.551144 | 3.2:-627878 | MS.gene53281:CDS |
| AGGTAGAGGAATGACATTGT+GGG | 0.575168 | 3.2:-627864 | MS.gene53281:CDS |
| ATGCCAACAATTCTACGAGC+AGG | 0.576106 | 3.2:-627884 | MS.gene53281:CDS |
| TTTGTTCGAAACCTATTCGT+CGG | 0.576535 | 3.2:-626659 | MS.gene53281:CDS |
| CTTACAGAACCTTTAGGACA+AGG | 0.591800 | 3.2:+628999 | None:intergenic |
| TGAACTAGATCTTTCTGTCG+AGG | 0.600096 | 3.2:-629442 | MS.gene53281:CDS |
| AGAAAGATCTAGTTCAGTCA+TGG | 0.609780 | 3.2:+629449 | None:intergenic |
| TGTTCGAGCGATATGGAGAA+GGG | 0.616808 | 3.2:-628047 | MS.gene53281:CDS |
| CAGGTAGAGGAATGACATTG+TGG | 0.629598 | 3.2:-627865 | MS.gene53281:CDS |
| GAATGCTCGTATTGTGCGTG+AGG | 0.629611 | 3.2:-627260 | MS.gene53281:CDS |
| AACAGCTCCAGCTTTCTAGG+AGG | 0.635879 | 3.2:+627821 | None:intergenic |
| GCAGCACTATCTTCACTGGA+TGG | 0.651360 | 3.2:-627907 | MS.gene53281:intron |
| TTCTGTAAGACACAGAGAGG+TGG | 0.659198 | 3.2:-628985 | MS.gene53281:CDS |
| GTTCTCCTATGAAAATAACC+CGG | 0.677731 | 3.2:-627801 | MS.gene53281:intron |
| AGGTTCTGTAAGACACAGAG+AGG | 0.695163 | 3.2:-628988 | MS.gene53281:CDS |
| TTGTGTATACGATGAATCTG+CGG | 0.746450 | 3.2:+629415 | None:intergenic |
| GAGGTGGTCAGAGAAACTGG+TGG | 0.779819 | 3.2:-628969 | MS.gene53281:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGTTAAAATCATTAAAA+TGG | + | chr3.2:627966-627985 | None:intergenic | 10.0% |
| !!! | ACAAAATATTTTAAAAGATA+AGG | + | chr3.2:627737-627756 | None:intergenic | 10.0% |
| !!! | TATATTTTCTCAAATTATTA+CGG | + | chr3.2:626868-626887 | None:intergenic | 10.0% |
| !! | AATAATTGTTGAATAATACT+TGG | - | chr3.2:629247-629266 | MS.gene53281:intron | 15.0% |
| !! | AATGTTAAATGATTTATGAT+TGG | - | chr3.2:628426-628445 | MS.gene53281:intron | 15.0% |
| !! | TTTGAGAAAATATAAGTAAT+TGG | - | chr3.2:626874-626893 | MS.gene53281:intron | 15.0% |
| !!! | AAAATTGATTTTGAATGAAT+CGG | - | chr3.2:628398-628417 | MS.gene53281:intron | 15.0% |
| !!! | ATATTTTCTCAAATTATTAC+GGG | + | chr3.2:626867-626886 | None:intergenic | 15.0% |
| !!! | CAATAAAATTCTTTTGAAAT+TGG | + | chr3.2:626977-626996 | None:intergenic | 15.0% |
| !! | AGAGATAAGAAAAAAGATAA+AGG | - | chr3.2:627305-627324 | MS.gene53281:intron | 20.0% |
| !! | CAAATAAATTCTTACTTCTT+TGG | + | chr3.2:628948-628967 | None:intergenic | 20.0% |
| !! | CAACAATTATTAAACATAAC+TGG | + | chr3.2:629238-629257 | None:intergenic | 20.0% |
| !! | CAATATAAGTAGAAAGAATA+AGG | + | chr3.2:627870-627889 | None:intergenic | 20.0% |
| !! | GAGATAAGAAAAAAGATAAA+GGG | - | chr3.2:627306-627325 | MS.gene53281:intron | 20.0% |
| !! | GGTTCAATTTCAATAAAAAA+AGG | + | chr3.2:629187-629206 | None:intergenic | 20.0% |
| !! | TTTCTACTTATATTGTTTAG+TGG | - | chr3.2:627875-627894 | MS.gene53281:CDS | 20.0% |
| !!! | AAAAACAAAAGCTGTTTTTT+TGG | - | chr3.2:627241-627260 | MS.gene53281:CDS | 20.0% |
| !!! | AAAACAAAAGCTGTTTTTTT+GGG | - | chr3.2:627242-627261 | MS.gene53281:CDS | 20.0% |
| !!! | TTTAGTTCTTCTAAAATGAA+TGG | + | chr3.2:629208-629227 | None:intergenic | 20.0% |
| ! | ACCAACAGTAGTAATATTAA+GGG | + | chr3.2:627059-627078 | None:intergenic | 25.0% |
| ! | ATAGAAGAACATTATCTTAC+CGG | + | chr3.2:628316-628335 | None:intergenic | 25.0% |
| ! | ATTAAAATGGACCATTAAGA+AGG | + | chr3.2:627953-627972 | None:intergenic | 25.0% |
| ! | ATTCTAACTAACTATTCTCA+GGG | - | chr3.2:627549-627568 | MS.gene53281:intron | 25.0% |
| ! | GTAAACAACTATGAAAATGA+AGG | + | chr3.2:627916-627935 | None:intergenic | 25.0% |
| ! | GTTTCATACTTAATAGCATA+AGG | + | chr3.2:626799-626818 | None:intergenic | 25.0% |
| ! | TGATTTATAAGAGAATGAAG+TGG | + | chr3.2:629147-629166 | None:intergenic | 25.0% |
| ! | TGGATTTAAATGGAATAGAA+CGG | - | chr3.2:627397-627416 | MS.gene53281:intron | 25.0% |
| ! | TTCATAGTTGTTTACTAGTT+CGG | - | chr3.2:627921-627940 | MS.gene53281:intron | 25.0% |
| ! | TTGAGTGTAAAAATCACATT+TGG | - | chr3.2:628477-628496 | MS.gene53281:intron | 25.0% |
| !! | AAAAATACTTTGTGATGGAA+TGG | - | chr3.2:627372-627391 | MS.gene53281:intron | 25.0% |
| !! | AATGATTTATGGTTGACTTA+TGG | - | chr3.2:627024-627043 | MS.gene53281:intron | 25.0% |
| !! | ATTTTCAACATACTCATTCT+TGG | - | chr3.2:627698-627717 | MS.gene53281:intron | 25.0% |
| !! | TTAAGATAGTTGATTCTACT+CGG | + | chr3.2:628749-628768 | None:intergenic | 25.0% |
| !!! | AAACAAAAGCTGTTTTTTTG+GGG | - | chr3.2:627243-627262 | MS.gene53281:CDS | 25.0% |
| !!! | AAATTCTGGATTTTTTTTGC+CGG | - | chr3.2:629021-629040 | MS.gene53281:intron | 25.0% |
| !!! | AAGATTTGCTATAATTGTCA+TGG | - | chr3.2:628711-628730 | MS.gene53281:intron | 25.0% |
| !!! | AGAGAGGTATACATATTTTA+GGG | - | chr3.2:628094-628113 | MS.gene53281:intron | 25.0% |
| !!! | ATGCATTTGATTTGTAACAA+TGG | - | chr3.2:628669-628688 | MS.gene53281:intron | 25.0% |
| !!! | ATTCCATCACAAAGTATTTT+TGG | + | chr3.2:627373-627392 | None:intergenic | 25.0% |
| !!! | TAGAGAGGTATACATATTTT+AGG | - | chr3.2:628093-628112 | MS.gene53281:intron | 25.0% |
| !!! | TAGTTAGAATGGCTATTTTT+GGG | + | chr3.2:627539-627558 | None:intergenic | 25.0% |
| !!! | TATCTTTTTTCTTATCTCTC+TGG | + | chr3.2:627304-627323 | None:intergenic | 25.0% |
| !!! | TGCATTTGATTTGTAACAAT+GGG | - | chr3.2:628670-628689 | MS.gene53281:intron | 25.0% |
| !!! | TTAATTTCTCGCTTTGTTTT+GGG | - | chr3.2:628765-628784 | MS.gene53281:intron | 25.0% |
| !!! | TTAGTTAGAATGGCTATTTT+TGG | + | chr3.2:627540-627559 | None:intergenic | 25.0% |
| !!! | TTTTGCTTATTTTCCAAAGT+TGG | - | chr3.2:628998-629017 | MS.gene53281:CDS | 25.0% |
| AAATCCAGAATTTCCAACTT+TGG | + | chr3.2:629014-629033 | None:intergenic | 30.0% | |
| AACAACTATGAAAATGAAGG+TGG | + | chr3.2:627913-627932 | None:intergenic | 30.0% | |
| ACCACTTTCATATTCATGTA+AGG | + | chr3.2:629342-629361 | None:intergenic | 30.0% | |
| ATGAAAATGAAGGTGGTTTA+TGG | + | chr3.2:627906-627925 | None:intergenic | 30.0% | |
| ATGAAAGCAGTAAGTAAGAA+AGG | - | chr3.2:627835-627854 | MS.gene53281:CDS | 30.0% | |
| ATTCTTCAAAATGTAGGAGA+AGG | - | chr3.2:628884-628903 | MS.gene53281:intron | 30.0% | |
| CACCAACAGTAGTAATATTA+AGG | + | chr3.2:627060-627079 | None:intergenic | 30.0% | |
| CATTCTAACTAACTATTCTC+AGG | - | chr3.2:627548-627567 | MS.gene53281:intron | 30.0% | |
| CCTTACATTCTTCAAAATGT+AGG | - | chr3.2:628878-628897 | MS.gene53281:intron | 30.0% | |
| CTATAAATTATCCGACGAAT+AGG | + | chr3.2:629450-629469 | None:intergenic | 30.0% | |
| CTGAGAATAGTTAGTTAGAA+TGG | + | chr3.2:627550-627569 | None:intergenic | 30.0% | |
| CTTCCAAAAATACTTTGTGA+TGG | - | chr3.2:627367-627386 | MS.gene53281:intron | 30.0% | |
| GAATAGGTTTCGAACAAATA+AGG | + | chr3.2:629434-629453 | None:intergenic | 30.0% | |
| GTGACTTGAGAAATGATTTA+TGG | - | chr3.2:627013-627032 | MS.gene53281:intron | 30.0% | |
| GTTCTTCTATCTCCAATTTA+TGG | - | chr3.2:628326-628345 | MS.gene53281:intron | 30.0% | |
| TAAATCATTTCTCAAGTCAC+AGG | + | chr3.2:627013-627032 | None:intergenic | 30.0% | |
| TAGAAGAACATTATCTTACC+GGG | + | chr3.2:628315-628334 | None:intergenic | 30.0% | |
| TATGTGTCTCAAATCACTTT+CGG | - | chr3.2:628528-628547 | MS.gene53281:intron | 30.0% | |
| TCCCTTAATATTACTACTGT+TGG | - | chr3.2:627055-627074 | MS.gene53281:intron | 30.0% | |
| TCCTTACATGAATATGAAAG+TGG | - | chr3.2:629338-629357 | MS.gene53281:intron | 30.0% | |
| TTACTTACTGCTTTCATACA+TGG | + | chr3.2:627832-627851 | None:intergenic | 30.0% | |
| TTCCTCATTGATCAAAATAG+TGG | - | chr3.2:627801-627820 | MS.gene53281:intron | 30.0% | |
| TTGAATGTTGTGTACTTTCT+TGG | - | chr3.2:627994-628013 | MS.gene53281:intron | 30.0% | |
| TTTGCATTTCCTCCATAAAT+TGG | + | chr3.2:628341-628360 | None:intergenic | 30.0% | |
| ! | AGAAAGTACACAACATTCAA+TGG | + | chr3.2:627994-628013 | None:intergenic | 30.0% |
| ! | AGCGTTTTTCTGATATTTCT+TGG | - | chr3.2:629290-629309 | MS.gene53281:intron | 30.0% |
| ! | CATAATGTTGTCCTTTTTGT+AGG | - | chr3.2:627772-627791 | MS.gene53281:intron | 30.0% |
| ! | CTATTGAAGTTGTTATTCCA+GGG | + | chr3.2:627635-627654 | None:intergenic | 30.0% |
| ! | TAACAATGGGGTTAGTATTT+AGG | - | chr3.2:628683-628702 | MS.gene53281:intron | 30.0% |
| ! | TAAGATAGTTGATTCTACTC+GGG | + | chr3.2:628748-628767 | None:intergenic | 30.0% |
| ! | TTTTCCAAAGTTGGAAATTC+TGG | - | chr3.2:629007-629026 | MS.gene53281:CDS | 30.0% |
| !! | CCTACATTTTGAAGAATGTA+AGG | + | chr3.2:628881-628900 | None:intergenic | 30.0% |
| !! | CTACTGTTGGTGTTATTAAT+AGG | - | chr3.2:627068-627087 | MS.gene53281:intron | 30.0% |
| !! | GCATTTGATTTGTAACAATG+GGG | - | chr3.2:628671-628690 | MS.gene53281:intron | 30.0% |
| !! | TGAATGTGTTATTTCGATCA+AGG | + | chr3.2:628632-628651 | None:intergenic | 30.0% |
| !!! | AACAAAAGCTGTTTTTTTGG+GGG | - | chr3.2:627244-627263 | MS.gene53281:CDS | 30.0% |
| !!! | CTATTTTGATCAATGAGGAA+AGG | + | chr3.2:627801-627820 | None:intergenic | 30.0% |
| !!! | CTTAATTTCTCGCTTTGTTT+TGG | - | chr3.2:628764-628783 | MS.gene53281:intron | 30.0% |
| !!! | CTTTGTCTGTTTGGTTTTTT+TGG | - | chr3.2:628372-628391 | MS.gene53281:intron | 30.0% |
| !!! | TAATTTCTCGCTTTGTTTTG+GGG | - | chr3.2:628766-628785 | MS.gene53281:intron | 30.0% |
| AAATACTTGTTCGAGCGATA+TGG | - | chr3.2:628041-628060 | MS.gene53281:CDS | 35.0% | |
| AAGGAATGATAAAGAACCCA+AGG | + | chr3.2:628600-628619 | None:intergenic | 35.0% | |
| AGAAAAACGCTAGCAAGATA+CGG | + | chr3.2:629281-629300 | None:intergenic | 35.0% | |
| AGGAAAGGAAACCTACAAAA+AGG | + | chr3.2:627786-627805 | None:intergenic | 35.0% | |
| ATGAAACACTGACAAAGACA+TGG | - | chr3.2:626812-626831 | MS.gene53281:intron | 35.0% | |
| CCTGGAATAACAACTTCAAT+AGG | - | chr3.2:627633-627652 | MS.gene53281:intron | 35.0% | |
| CTTCTATCTCCAATTTATGG+AGG | - | chr3.2:628329-628348 | MS.gene53281:intron | 35.0% | |
| GTACAAATGTAGTGATATGC+CGG | + | chr3.2:629043-629062 | None:intergenic | 35.0% | |
| GTGTTGTGATCAACAAAGTA+AGG | + | chr3.2:629377-629396 | None:intergenic | 35.0% | |
| GTTCTCCTATGAAAATAACC+CGG | - | chr3.2:628294-628313 | MS.gene53281:CDS | 35.0% | |
| TACTTTGTTGATCACAACAC+TGG | - | chr3.2:629377-629396 | MS.gene53281:intron | 35.0% | |
| TAGGTTTATCCTTGTCCTAA+AGG | - | chr3.2:627087-627106 | MS.gene53281:intron | 35.0% | |
| TCGATCAAGGTTCAATTGAA+AGG | + | chr3.2:628619-628638 | None:intergenic | 35.0% | |
| TTGTCTATGTTCTCAACCTT+GGG | - | chr3.2:628581-628600 | MS.gene53281:intron | 35.0% | |
| TTGTGTATACGATGAATCTG+CGG | + | chr3.2:626683-626702 | None:intergenic | 35.0% | |
| TTTGTCTATGTTCTCAACCT+TGG | - | chr3.2:628580-628599 | MS.gene53281:intron | 35.0% | |
| TTTGTTCGAAACCTATTCGT+CGG | - | chr3.2:629436-629455 | MS.gene53281:CDS | 35.0% | |
| ! | CCTATTGAAGTTGTTATTCC+AGG | + | chr3.2:627636-627655 | None:intergenic | 35.0% |
| ! | CTTTCTTGGTTTCTTGTTGT+AGG | - | chr3.2:628008-628027 | MS.gene53281:intron | 35.0% |
| ! | GAATGAAGTGGATTTCAACA+AGG | + | chr3.2:629135-629154 | None:intergenic | 35.0% |
| ! | TGGAATGGAGTGGATTTAAA+TGG | - | chr3.2:627387-627406 | MS.gene53281:intron | 35.0% |
| !! | GAGGTATACATATTTTAGGG+AGG | - | chr3.2:628097-628116 | MS.gene53281:intron | 35.0% |
| !! | TCTTACCGGGTTATTTTCAT+AGG | + | chr3.2:628302-628321 | None:intergenic | 35.0% |
| !! | TTCGGATTAGTCCTTCTTAA+TGG | - | chr3.2:627939-627958 | MS.gene53281:intron | 35.0% |
| !! | TTTTATATGCTGATTGACCC+TGG | - | chr3.2:627615-627634 | MS.gene53281:intron | 35.0% |
| !! | TTTTGGGTGGTTAGTGTTAA+AGG | + | chr3.2:627523-627542 | None:intergenic | 35.0% |
| !!! | CACCACTATTTTGATCAATG+AGG | + | chr3.2:627806-627825 | None:intergenic | 35.0% |
| !!! | TTAGAATGGCTATTTTTGGG+TGG | + | chr3.2:627536-627555 | None:intergenic | 35.0% |
| !!! | TTTTTTTGGGGGTATCTGTT+AGG | - | chr3.2:627255-627274 | MS.gene53281:CDS | 35.0% |
| AAGCCAAATCATCCTTGAGA+AGG | + | chr3.2:629078-629097 | None:intergenic | 40.0% | |
| AAGTTACTCTTGGATGCTTC+TGG | - | chr3.2:628920-628939 | MS.gene53281:intron | 40.0% | |
| ACATAGACAAAGTGTGCGTT+TGG | + | chr3.2:628571-628590 | None:intergenic | 40.0% | |
| ACGGAGTTATCACTCTATGA+TGG | - | chr3.2:627416-627435 | MS.gene53281:intron | 40.0% | |
| AGCCAAATCATCCTTGAGAA+GGG | + | chr3.2:629077-629096 | None:intergenic | 40.0% | |
| AGGTAGAGGAATGACATTGT+GGG | - | chr3.2:628231-628250 | MS.gene53281:intron | 40.0% | |
| ATATGAAAGTGGTTCTCTGC+AGG | - | chr3.2:629349-629368 | MS.gene53281:intron | 40.0% | |
| CAACATTCACAAATTGGCCA+GGG | + | chr3.2:627481-627500 | None:intergenic | 40.0% | |
| CACAACACTGGATTTCAATC+TGG | - | chr3.2:629389-629408 | MS.gene53281:intron | 40.0% | |
| CACTACATTTGTACCGTACT+AGG | - | chr3.2:629049-629068 | MS.gene53281:intron | 40.0% | |
| CGCAAGAGTGAGTTATTATG+AGG | + | chr3.2:628169-628188 | None:intergenic | 40.0% | |
| CTGTGTCTTACAGAACCTTT+AGG | + | chr3.2:627105-627124 | None:intergenic | 40.0% | |
| GAGGAAATGCAAACATGTAG+AGG | - | chr3.2:628348-628367 | MS.gene53281:intron | 40.0% | |
| TGAACTAGATCTTTCTGTCG+AGG | - | chr3.2:626653-626672 | MS.gene53281:CDS | 40.0% | |
| TGCAGCCAACATTCACAAAT+TGG | + | chr3.2:627487-627506 | None:intergenic | 40.0% | |
| TGTAGAGGACTTTGTCTGTT+TGG | - | chr3.2:628363-628382 | MS.gene53281:intron | 40.0% | |
| ! | AAAGTGTGCGTTTGGTTTCA+CGG | + | chr3.2:628563-628582 | None:intergenic | 40.0% |
| ! | CTCTCTAAAAGTCCCAATGA+TGG | + | chr3.2:628080-628099 | None:intergenic | 40.0% |
| ! | GGATTTTATGACAACTTCCC+TGG | - | chr3.2:627461-627480 | MS.gene53281:intron | 40.0% |
| ! | TACTTTGTGATGGAATGGAG+TGG | - | chr3.2:627377-627396 | MS.gene53281:intron | 40.0% |
| !! | ATTGAAGGCGTTTCAAGTGT+CGG | + | chr3.2:626933-626952 | None:intergenic | 40.0% |
| !! | CATCATTGGGACTTTTAGAG+AGG | - | chr3.2:628078-628097 | MS.gene53281:intron | 40.0% |
| !! | CTTACAGAACCTTTAGGACA+AGG | + | chr3.2:627099-627118 | None:intergenic | 40.0% |
| ACAATTCTACGAGCAGGTAG+AGG | - | chr3.2:628217-628236 | MS.gene53281:intron | 45.0% | |
| ACGACGAACGAAGTTACTCT+TGG | - | chr3.2:628910-628929 | MS.gene53281:intron | 45.0% | |
| AGAAGGGAGAAGTCCATCAT+TGG | - | chr3.2:628064-628083 | MS.gene53281:CDS | 45.0% | |
| AGGTTCTGTAAGACACAGAG+AGG | - | chr3.2:627107-627126 | MS.gene53281:intron | 45.0% | |
| ATGCCAACAATTCTACGAGC+AGG | - | chr3.2:628211-628230 | MS.gene53281:intron | 45.0% | |
| CACCCTTCTCAAGGATGATT+TGG | - | chr3.2:629072-629091 | MS.gene53281:intron | 45.0% | |
| CAGGTAGAGGAATGACATTG+TGG | - | chr3.2:628230-628249 | MS.gene53281:intron | 45.0% | |
| CCAACATTCACAAATTGGCC+AGG | + | chr3.2:627482-627501 | None:intergenic | 45.0% | |
| CCTGGCCAATTTGTGAATGT+TGG | - | chr3.2:627479-627498 | MS.gene53281:intron | 45.0% | |
| CTACCTGCTCGTAGAATTGT+TGG | + | chr3.2:628217-628236 | None:intergenic | 45.0% | |
| GAAGGGAGAAGTCCATCATT+GGG | - | chr3.2:628065-628084 | MS.gene53281:CDS | 45.0% | |
| GACATTGTGGGAACGTTCTA+GGG | - | chr3.2:628243-628262 | MS.gene53281:intron | 45.0% | |
| GCACCAACACTTCAGATTGA+AGG | + | chr3.2:626948-626967 | None:intergenic | 45.0% | |
| TGACATTGTGGGAACGTTCT+AGG | - | chr3.2:628242-628261 | MS.gene53281:intron | 45.0% | |
| TGTTCGAGCGATATGGAGAA+GGG | - | chr3.2:628048-628067 | MS.gene53281:CDS | 45.0% | |
| TTCTGTAAGACACAGAGAGG+TGG | - | chr3.2:627110-627129 | MS.gene53281:intron | 45.0% | |
| TTGTTCGAGCGATATGGAGA+AGG | - | chr3.2:628047-628066 | MS.gene53281:CDS | 45.0% | |
| ! | ACGCCTTCAATCTGAAGTGT+TGG | - | chr3.2:626942-626961 | MS.gene53281:intron | 45.0% |
| ! | ATCACTCTATGATGGTGCCA+TGG | - | chr3.2:627424-627443 | MS.gene53281:intron | 45.0% |
| ! | TAGTTGATTCTACTCGGGCA+CGG | + | chr3.2:628743-628762 | None:intergenic | 45.0% |
| AACAGCTCCAGCTTTCTAGG+AGG | + | chr3.2:628277-628296 | None:intergenic | 50.0% | |
| AGAGAGGTGGTCAGAGAAAC+TGG | - | chr3.2:627123-627142 | MS.gene53281:intron | 50.0% | |
| CACATGTGTCAGTGTCGTGT+CGG | - | chr3.2:626904-626923 | MS.gene53281:intron | 50.0% | |
| GAATGCTCGTATTGTGCGTG+AGG | - | chr3.2:628835-628854 | MS.gene53281:intron | 50.0% | |
| GAGAACAGCTCCAGCTTTCT+AGG | + | chr3.2:628280-628299 | None:intergenic | 50.0% | |
| GCAGCACTATCTTCACTGGA+TGG | - | chr3.2:628188-628207 | MS.gene53281:intron | 50.0% | |
| GCCATGGTAGATTACAGTGG+CGG | - | chr3.2:627440-627459 | MS.gene53281:intron | 50.0% | |
| TCCGCCACTGTAATCTACCA+TGG | + | chr3.2:627444-627463 | None:intergenic | 50.0% | |
| TGAACCTCCTCCTAGAAAGC+TGG | - | chr3.2:628267-628286 | MS.gene53281:intron | 50.0% | |
| TTGCGCAGCACTATCTTCAC+TGG | - | chr3.2:628184-628203 | MS.gene53281:intron | 50.0% | |
| ! | AGTTGATTCTACTCGGGCAC+GGG | + | chr3.2:628742-628761 | None:intergenic | 50.0% |
| ! | GCGTGAGGCATTATGCGAAT+TGG | - | chr3.2:628850-628869 | MS.gene53281:intron | 50.0% |
| ! | GGTGCCATGGTAGATTACAG+TGG | - | chr3.2:627437-627456 | MS.gene53281:intron | 50.0% |
| ! | GTGCGTTTGGTTTCACGGTA+GGG | + | chr3.2:628558-628577 | None:intergenic | 50.0% |
| ! | TGTGCGTTTGGTTTCACGGT+AGG | + | chr3.2:628559-628578 | None:intergenic | 50.0% |
| !! | CTTGAGAAGGGTGCCTAGTA+CGG | + | chr3.2:629065-629084 | None:intergenic | 50.0% |
| CGACACGACACTGACACATG+TGG | + | chr3.2:626906-626925 | None:intergenic | 55.0% | |
| CGTACTAGGCACCCTTCTCA+AGG | - | chr3.2:629063-629082 | MS.gene53281:intron | 55.0% | |
| GAGGTGGTCAGAGAAACTGG+TGG | - | chr3.2:627126-627145 | MS.gene53281:intron | 55.0% | |
| ! | AGCTCCAGCTTTCTAGGAGG+AGG | + | chr3.2:628274-628293 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 626648 | 629469 | 626648 | ID=MS.gene53281 |
| chr3.2 | mRNA | 626648 | 629469 | 626648 | ID=MS.gene53281.t1;Parent=MS.gene53281 |
| chr3.2 | exon | 629425 | 629469 | 629425 | ID=MS.gene53281.t1.exon1;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 629425 | 629469 | 629425 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| chr3.2 | exon | 628960 | 629027 | 628960 | ID=MS.gene53281.t1.exon2;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 628960 | 629027 | 628960 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| chr3.2 | exon | 628274 | 628323 | 628274 | ID=MS.gene53281.t1.exon3;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 628274 | 628323 | 628274 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| chr3.2 | exon | 628018 | 628087 | 628018 | ID=MS.gene53281.t1.exon4;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 628018 | 628087 | 628018 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| chr3.2 | exon | 627802 | 627925 | 627802 | ID=MS.gene53281.t1.exon5;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 627802 | 627925 | 627802 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| chr3.2 | exon | 627165 | 627281 | 627165 | ID=MS.gene53281.t1.exon6;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 627165 | 627281 | 627165 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| chr3.2 | exon | 626648 | 626746 | 626648 | ID=MS.gene53281.t1.exon7;Parent=MS.gene53281.t1 |
| chr3.2 | CDS | 626648 | 626746 | 626648 | ID=cds.MS.gene53281.t1;Parent=MS.gene53281.t1 |
| Gene Sequence |
| Protein sequence |
