Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53390.t1 | XP_024627888.1 | 98.4 | 382 | 6 | 0 | 1 | 382 | 69 | 450 | 6.50E-214 | 753.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53390.t1 | Q08448 | 27.0 | 237 | 133 | 8 | 22 | 251 | 6 | 209 | 5.3e-15 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53390.t1 | G7LIR3 | 98.2 | 383 | 6 | 1 | 1 | 382 | 69 | 451 | 1.2e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene53390 | -0.814694 | 1.35E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene53390 | 0.854055 | 1.59E-61 | -1.69E-46 |
| MS.gene050577 | MS.gene53390 | 0.800115 | 1.68E-48 | -1.69E-46 |
| MS.gene052503 | MS.gene53390 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene53390 | 0.809108 | 2.23E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene53390 | 0.810578 | 1.08E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene53390 | -0.834632 | 2.68E-56 | -1.69E-46 |
| MS.gene054343 | MS.gene53390 | 0.82953 | 4.89E-55 | -1.69E-46 |
| MS.gene054344 | MS.gene53390 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene53390 | 0.822425 | 2.38E-53 | -1.69E-46 |
| MS.gene055719 | MS.gene53390 | -0.81793 | 2.55E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene53390 | 0.83677 | 7.70E-57 | -1.69E-46 |
| MS.gene056266 | MS.gene53390 | 0.855675 | 5.38E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene53390 | 0.813969 | 1.96E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene53390 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene059480 | MS.gene53390 | -0.800821 | 1.20E-48 | -1.69E-46 |
| MS.gene059837 | MS.gene53390 | 0.828689 | 7.82E-55 | -1.69E-46 |
| MS.gene05996 | MS.gene53390 | 0.802879 | 4.55E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene53390 | 0.813275 | 2.78E-51 | -1.69E-46 |
| MS.gene06027 | MS.gene53390 | 0.845991 | 2.87E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53390.t1 | MTR_8g086260 | 98.172 | 383 | 6 | 1 | 1 | 382 | 69 | 451 | 0.0 | 779 |
| MS.gene53390.t1 | MTR_8g086260 | 98.000 | 350 | 6 | 1 | 1 | 349 | 69 | 418 | 0.0 | 712 |
| MS.gene53390.t1 | MTR_8g086260 | 96.562 | 320 | 10 | 1 | 1 | 319 | 69 | 388 | 0.0 | 638 |
| MS.gene53390.t1 | MTR_2g015960 | 78.272 | 382 | 78 | 3 | 1 | 381 | 62 | 439 | 0.0 | 598 |
| MS.gene53390.t1 | MTR_8g086260 | 97.683 | 259 | 6 | 0 | 1 | 259 | 69 | 327 | 0.0 | 521 |
| MS.gene53390.t1 | MTR_8g086260 | 96.311 | 244 | 9 | 0 | 1 | 244 | 69 | 312 | 1.65e-172 | 484 |
| MS.gene53390.t1 | MTR_8g086260 | 96.311 | 244 | 9 | 0 | 1 | 244 | 69 | 312 | 9.22e-172 | 482 |
| MS.gene53390.t1 | MTR_2g015960 | 77.481 | 262 | 57 | 2 | 1 | 261 | 1 | 261 | 7.02e-145 | 412 |
| MS.gene53390.t1 | MTR_2g015960 | 77.481 | 262 | 57 | 2 | 1 | 261 | 62 | 322 | 3.25e-144 | 412 |
| MS.gene53390.t1 | MTR_4g128800 | 44.290 | 359 | 170 | 6 | 20 | 369 | 29 | 366 | 1.08e-94 | 288 |
| MS.gene53390.t1 | MTR_3g110530 | 43.258 | 356 | 187 | 5 | 17 | 370 | 56 | 398 | 1.70e-94 | 288 |
| MS.gene53390.t1 | MTR_1g040460 | 42.939 | 347 | 172 | 4 | 21 | 367 | 30 | 350 | 1.63e-90 | 276 |
| MS.gene53390.t1 | MTR_4g128800 | 44.706 | 340 | 158 | 6 | 20 | 350 | 29 | 347 | 4.77e-88 | 272 |
| MS.gene53390.t1 | MTR_4g128800 | 50.202 | 247 | 113 | 2 | 20 | 259 | 29 | 272 | 7.50e-80 | 246 |
| MS.gene53390.t1 | MTR_7g405800 | 51.765 | 85 | 40 | 1 | 89 | 172 | 143 | 227 | 2.72e-18 | 83.6 |
| MS.gene53390.t1 | MTR_6g005650 | 51.765 | 85 | 40 | 1 | 89 | 172 | 210 | 294 | 1.30e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53390.t1 | AT1G29120 | 72.656 | 384 | 96 | 3 | 1 | 382 | 80 | 456 | 0.0 | 545 |
| MS.gene53390.t1 | AT1G29120 | 72.656 | 384 | 96 | 3 | 1 | 382 | 79 | 455 | 0.0 | 544 |
| MS.gene53390.t1 | AT1G29120 | 72.656 | 384 | 96 | 3 | 1 | 382 | 79 | 455 | 0.0 | 544 |
| MS.gene53390.t1 | AT1G29120 | 72.208 | 385 | 97 | 4 | 1 | 382 | 79 | 456 | 0.0 | 536 |
| MS.gene53390.t1 | AT1G29120 | 72.829 | 357 | 88 | 3 | 1 | 355 | 79 | 428 | 2.09e-178 | 503 |
| MS.gene53390.t1 | AT1G29120 | 72.871 | 317 | 77 | 3 | 1 | 315 | 79 | 388 | 1.26e-152 | 436 |
| MS.gene53390.t1 | AT1G29120 | 72.871 | 317 | 77 | 3 | 1 | 315 | 79 | 388 | 2.53e-152 | 436 |
| MS.gene53390.t1 | AT1G29120 | 70.325 | 246 | 64 | 3 | 1 | 244 | 79 | 317 | 1.76e-114 | 337 |
| MS.gene53390.t1 | AT4G25770 | 47.875 | 353 | 158 | 6 | 16 | 367 | 87 | 414 | 4.43e-102 | 308 |
| MS.gene53390.t1 | AT4G25770 | 48.060 | 335 | 146 | 5 | 16 | 348 | 87 | 395 | 2.39e-95 | 291 |
| MS.gene53390.t1 | AT5G51180 | 43.137 | 357 | 176 | 6 | 11 | 367 | 24 | 353 | 1.06e-90 | 277 |
| MS.gene53390.t1 | AT5G51180 | 43.137 | 357 | 176 | 6 | 11 | 367 | 24 | 353 | 1.06e-90 | 277 |
| MS.gene53390.t1 | AT1G10040 | 42.340 | 359 | 177 | 7 | 17 | 369 | 76 | 410 | 1.29e-89 | 276 |
| MS.gene53390.t1 | AT1G10040 | 42.604 | 338 | 164 | 7 | 17 | 348 | 76 | 389 | 2.03e-83 | 260 |
Find 101 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAAGAACTTCCTAATTTA+TGG | 0.106858 | 4.1:+13969127 | MS.gene53390:CDS |
| TCCTTTGCTTTCACTGCTTC+TGG | 0.142901 | 4.1:-13972470 | None:intergenic |
| TCAGCTTTCACTCATCATTT+TGG | 0.208591 | 4.1:+13972694 | MS.gene53390:CDS |
| CATCTCCTTGTTCTTGTTCA+TGG | 0.217800 | 4.1:+13968272 | MS.gene53390:CDS |
| TCTGAAAAGAATCTCCTTTC+TGG | 0.236492 | 4.1:+13969831 | MS.gene53390:CDS |
| GCTTATACTAAGACGTTTAC+TGG | 0.260732 | 4.1:+13969623 | MS.gene53390:CDS |
| TTCACATGATACCTATAATA+AGG | 0.278470 | 4.1:+13969903 | MS.gene53390:CDS |
| TCCTTTCTGGCCCACTCTTT+AGG | 0.289850 | 4.1:+13969844 | MS.gene53390:CDS |
| TTTCTAGCATGGGAAATTCT+AGG | 0.305809 | 4.1:+13968237 | MS.gene53390:CDS |
| AAATGTACTAACCATAAATT+AGG | 0.309982 | 4.1:-13969138 | None:intergenic |
| ACCAGGTTGGTCCTTATTAT+AGG | 0.313116 | 4.1:-13969914 | None:intergenic |
| TTTCGAAAAGCTTGTACTTT+GGG | 0.316035 | 4.1:-13969965 | None:intergenic |
| CCTATGGCTCCTTTATTTGT+TGG | 0.329773 | 4.1:+13970637 | MS.gene53390:CDS |
| TGTTCTTGTTCATGGCATCT+TGG | 0.337945 | 4.1:+13968280 | MS.gene53390:CDS |
| ACAAGAAACATCGTCAATAT+TGG | 0.350651 | 4.1:+13972892 | MS.gene53390:CDS |
| CTTTCGAAAAGCTTGTACTT+TGG | 0.355164 | 4.1:-13969966 | None:intergenic |
| TCGAAAGGAGGGATGATTGC+TGG | 0.377207 | 4.1:+13969982 | MS.gene53390:CDS |
| TATAGGTATCATGTGAATAA+AGG | 0.383951 | 4.1:-13969897 | None:intergenic |
| GGGCCATCGGAAGGGACTGC+AGG | 0.390467 | 4.1:-13972437 | None:intergenic |
| GCTATGAGTTCTACCACTAA+TGG | 0.391565 | 4.1:+13968206 | None:intergenic |
| AGAAATAGAGTTTCCATTAG+TGG | 0.402967 | 4.1:-13968219 | None:intergenic |
| AAGACGTTTACTGGGATTGA+TGG | 0.406587 | 4.1:+13969632 | MS.gene53390:CDS |
| CCTTTATTTGTTGGTCGGAC+TGG | 0.408385 | 4.1:+13970646 | MS.gene53390:CDS |
| CCTCCTCGCCAATCTTTAGA+TGG | 0.414176 | 4.1:+13972383 | MS.gene53390:CDS |
| ATTGGGACGCCCAACAGAAA+TGG | 0.424257 | 4.1:-13970595 | None:intergenic |
| CCAGTCCGACCAACAAATAA+AGG | 0.424489 | 4.1:-13970646 | None:intergenic |
| AACAGAAGAGGTGGTCTGTT+GGG | 0.428007 | 4.1:-13970697 | None:intergenic |
| AACTTGATATAGATATGGTT+GGG | 0.431541 | 4.1:+13970983 | MS.gene53390:intron |
| TTCCAGCTTCCATTTCTGTT+GGG | 0.433079 | 4.1:+13970586 | MS.gene53390:intron |
| TCTCCACATCTTGGTGTAAG+AGG | 0.433082 | 4.1:+13970036 | MS.gene53390:CDS |
| ACTTTAGCATCTCCACATCT+TGG | 0.442362 | 4.1:+13970027 | MS.gene53390:CDS |
| ATCTTGGTGTAAGAGGAAAA+AGG | 0.442918 | 4.1:+13970043 | MS.gene53390:CDS |
| TTAACAGAGGAGATGATTCA+AGG | 0.446850 | 4.1:+13972639 | MS.gene53390:intron |
| AGGAGGGATGATTGCTGGGT+TGG | 0.447520 | 4.1:+13969987 | MS.gene53390:CDS |
| TTTCCAGCTTCCATTTCTGT+TGG | 0.449529 | 4.1:+13970585 | MS.gene53390:intron |
| ACAAGAACAAGGAGATGGTC+TGG | 0.452536 | 4.1:-13968266 | None:intergenic |
| TTGTTCATGGCATCTTGGCT+AGG | 0.453514 | 4.1:+13968285 | MS.gene53390:CDS |
| AGAAAAGCTTGCTGCACCTA+TGG | 0.460424 | 4.1:+13970621 | MS.gene53390:CDS |
| TGGCTCCTTTATTTGTTGGT+CGG | 0.464101 | 4.1:+13970641 | MS.gene53390:CDS |
| CGAAAGGAGGGATGATTGCT+GGG | 0.465668 | 4.1:+13969983 | MS.gene53390:CDS |
| GCTAAAGTAATAAAATTGAT+TGG | 0.472395 | 4.1:-13970012 | None:intergenic |
| ATCCTCGATAAGGAGGGAAA+TGG | 0.473394 | 4.1:+13971014 | MS.gene53390:CDS |
| ACCACCTCTTCTGTTGAGAA+TGG | 0.476842 | 4.1:+13970705 | MS.gene53390:CDS |
| TAACTTGATATAGATATGGT+TGG | 0.477256 | 4.1:+13970982 | MS.gene53390:intron |
| TCCTAAAGAGTGGGCCAGAA+AGG | 0.480524 | 4.1:-13969845 | None:intergenic |
| ATGGCTTCTGATTGTGAAGA+TGG | 0.489648 | 4.1:+13970724 | MS.gene53390:CDS |
| ATTCAAGGATTACAACAGTT+GGG | 0.500650 | 4.1:+13972654 | MS.gene53390:CDS |
| GCTGGTATCCATCTAAAGAT+TGG | 0.501403 | 4.1:-13972391 | None:intergenic |
| TGGAAACTCTATTTCTAGCA+TGG | 0.508951 | 4.1:+13968226 | MS.gene53390:CDS |
| GGCCATCGGAAGGGACTGCA+GGG | 0.513927 | 4.1:-13972436 | None:intergenic |
| ACTGATACAGCACAGCGGAC+TGG | 0.514147 | 4.1:+13969071 | MS.gene53390:intron |
| GGAAACTCTATTTCTAGCAT+GGG | 0.517128 | 4.1:+13968227 | MS.gene53390:CDS |
| GGAAACTGAGGGCCATCGGA+AGG | 0.521343 | 4.1:-13972446 | None:intergenic |
| TTTGCTTTCACTGCTTCTGG+AGG | 0.522349 | 4.1:-13972467 | None:intergenic |
| GATTCAAGGATTACAACAGT+TGG | 0.525073 | 4.1:+13972653 | MS.gene53390:CDS |
| CAACAGAAGAGGTGGTCTGT+TGG | 0.525855 | 4.1:-13970698 | None:intergenic |
| AAGGATTACAACAGTTGGGA+TGG | 0.542099 | 4.1:+13972658 | MS.gene53390:CDS |
| CTTATACTAAGACGTTTACT+GGG | 0.544140 | 4.1:+13969624 | MS.gene53390:CDS |
| GAGGGAAATGGAGCTCAGTA+AGG | 0.546083 | 4.1:+13971026 | MS.gene53390:CDS |
| CAAGAACAAGGAGATGGTCT+GGG | 0.548685 | 4.1:-13968265 | None:intergenic |
| TGGAGGAAACTGAGGGCCAT+CGG | 0.548884 | 4.1:-13972450 | None:intergenic |
| GGTGGCGCACATCCTCGATA+AGG | 0.551809 | 4.1:+13971004 | MS.gene53390:CDS |
| TTTCTGGCCCACTCTTTAGG+AGG | 0.557270 | 4.1:+13969847 | MS.gene53390:CDS |
| TGGTCTGTTGGGTTTACCAT+CGG | 0.559958 | 4.1:-13970686 | None:intergenic |
| TGTTGGGTTTACCATCGGTA+AGG | 0.561909 | 4.1:-13970681 | None:intergenic |
| CTCCATTTCCCTCCTTATCG+AGG | 0.562222 | 4.1:-13971016 | None:intergenic |
| AAATTAGGAAGTTCTTTCCA+AGG | 0.565004 | 4.1:-13969123 | None:intergenic |
| TGCCCTGCAGTCCCTTCCGA+TGG | 0.565321 | 4.1:+13972434 | MS.gene53390:CDS |
| CCAACAAATAAAGGAGCCAT+AGG | 0.566742 | 4.1:-13970637 | None:intergenic |
| GATCTTGCACACAGAACGGC+AGG | 0.571400 | 4.1:+13969937 | MS.gene53390:CDS |
| GAAACTGAGGGCCATCGGAA+GGG | 0.573496 | 4.1:-13972445 | None:intergenic |
| ATTCAACATCAACCACGTGC+TGG | 0.573595 | 4.1:-13972409 | None:intergenic |
| AATGAATGGTTTCACAATGC+TGG | 0.576009 | 4.1:+13972830 | MS.gene53390:CDS |
| TTTACTGGGATTGATGGAGC+AGG | 0.577171 | 4.1:+13969638 | MS.gene53390:CDS |
| GGCGCACATCCTCGATAAGG+AGG | 0.577833 | 4.1:+13971007 | MS.gene53390:CDS |
| ACTGCTTCTGGAGGAAACTG+AGG | 0.578708 | 4.1:-13972458 | None:intergenic |
| CAAATAAGCCTCCTAAAGAG+TGG | 0.584169 | 4.1:-13969855 | None:intergenic |
| AGTCAGTTGTTCCTTACCGA+TGG | 0.586972 | 4.1:+13970670 | MS.gene53390:CDS |
| GCCATTCTCAACAGAAGAGG+TGG | 0.592717 | 4.1:-13970706 | None:intergenic |
| TTTCCTCTTACACCAAGATG+TGG | 0.596892 | 4.1:-13970039 | None:intergenic |
| AAATAAGCCTCCTAAAGAGT+GGG | 0.606229 | 4.1:-13969854 | None:intergenic |
| TCCAGAAGCAGTGAAAGCAA+AGG | 0.606566 | 4.1:+13972469 | MS.gene53390:CDS |
| CCATCTAAAGATTGGCGAGG+AGG | 0.609081 | 4.1:-13972383 | None:intergenic |
| TGTGTGCAAGATCACCAGGT+TGG | 0.609908 | 4.1:-13969927 | None:intergenic |
| GTTCTGTGTGCAAGATCACC+AGG | 0.612896 | 4.1:-13969931 | None:intergenic |
| TGGTGATCTTGCACACAGAA+CGG | 0.618484 | 4.1:+13969933 | MS.gene53390:CDS |
| TGTAGGAGTAATTGCTCATG+TGG | 0.621038 | 4.1:+13972853 | MS.gene53390:CDS |
| TGGTTTCACAATGCTGGTGT+AGG | 0.625663 | 4.1:+13972836 | MS.gene53390:CDS |
| ATGTTGTTATGAGCAAAGAA+AGG | 0.626830 | 4.1:-13972717 | None:intergenic |
| CTGCTTCTGGAGGAAACTGA+GGG | 0.630303 | 4.1:-13972457 | None:intergenic |
| GAAGCCATTCTCAACAGAAG+AGG | 0.632448 | 4.1:-13970709 | None:intergenic |
| CATGAACAAGAACAAGGAGA+TGG | 0.634338 | 4.1:-13968271 | None:intergenic |
| TGTTACTGTAGATCTGCACT+TGG | 0.649162 | 4.1:+13970822 | MS.gene53390:intron |
| TTGATATAGATATGGTTGGG+TGG | 0.653394 | 4.1:+13970986 | MS.gene53390:intron |
| GAATATCATGAAATTGTCGA+AGG | 0.657213 | 4.1:+13972530 | MS.gene53390:CDS |
| ACCTATAATAAGGACCAACC+TGG | 0.658865 | 4.1:+13969913 | MS.gene53390:CDS |
| GCGCACATCCTCGATAAGGA+GGG | 0.667292 | 4.1:+13971008 | MS.gene53390:CDS |
| AGATGCCATGAACAAGAACA+AGG | 0.674157 | 4.1:-13968277 | None:intergenic |
| TATCCATCTAAAGATTGGCG+AGG | 0.684476 | 4.1:-13972386 | None:intergenic |
| GCCTGATACCCAGAAAACTG+TGG | 0.752710 | 4.1:+13972508 | MS.gene53390:CDS |
| TTTAGATGGATACCAGCACG+TGG | 0.761315 | 4.1:+13972397 | MS.gene53390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATACTAAAAATTTAC+TGG | + | chr4.1:13970530-13970549 | MS.gene53390:intron | 10.0% |
| !! | TAACAAAATTTAAATTATAC+TGG | + | chr4.1:13970431-13970450 | MS.gene53390:intron | 10.0% |
| !! | TTACAACTAAAATTTATATA+TGG | - | chr4.1:13970114-13970133 | None:intergenic | 10.0% |
| !!! | AGTATAATTTAAATTTTGTT+AGG | - | chr4.1:13970432-13970451 | None:intergenic | 10.0% |
| !!! | AGTGATTTTTTTTTTTTTTT+TGG | + | chr4.1:13969205-13969224 | MS.gene53390:intron | 10.0% |
| !!! | GTATAATTTAAATTTTGTTA+GGG | - | chr4.1:13970431-13970450 | None:intergenic | 10.0% |
| !!! | GTTTATTTAACTAATTTTAA+AGG | - | chr4.1:13972087-13972106 | None:intergenic | 10.0% |
| !!! | TCATTTTATAAAAGTAATAT+AGG | + | chr4.1:13968524-13968543 | MS.gene53390:intron | 10.0% |
| !! | AAAAAAAAAATGATACTGTT+AGG | + | chr4.1:13971172-13971191 | MS.gene53390:intron | 15.0% |
| !! | AAAAAAAAATGATACTGTTA+GGG | + | chr4.1:13971173-13971192 | MS.gene53390:intron | 15.0% |
| !! | ATTGAAATTTCTCTAATTAT+TGG | - | chr4.1:13970382-13970401 | None:intergenic | 15.0% |
| !! | TGAAATTAAAGACAAAAAAA+TGG | - | chr4.1:13969319-13969338 | None:intergenic | 15.0% |
| !! | TGAATTTCAATATGTAATTA+CGG | - | chr4.1:13971910-13971929 | None:intergenic | 15.0% |
| !! | TTAGTTAAATAAACAAATGA+TGG | + | chr4.1:13972093-13972112 | MS.gene53390:intron | 15.0% |
| !!! | ATTGTTATTTTAAATAGCTT+AGG | - | chr4.1:13969491-13969510 | None:intergenic | 15.0% |
| !! | AAATGTACTAACCATAAATT+AGG | - | chr4.1:13969141-13969160 | None:intergenic | 20.0% |
| !! | ATCATAGAGAAATTATATAG+TGG | - | chr4.1:13971448-13971467 | None:intergenic | 20.0% |
| !! | ATCTTACATATGTTAAATAC+TGG | - | chr4.1:13971103-13971122 | None:intergenic | 20.0% |
| !! | ATTATTGAATTATGAGATAG+TGG | - | chr4.1:13968954-13968973 | None:intergenic | 20.0% |
| !! | CGAAACTATTAATATAGAAA+TGG | + | chr4.1:13972287-13972306 | MS.gene53390:intron | 20.0% |
| !! | GCTAAAGTAATAAAATTGAT+TGG | - | chr4.1:13970015-13970034 | None:intergenic | 20.0% |
| !! | TAAAGAAATTACCAAAATTG+AGG | - | chr4.1:13970964-13970983 | None:intergenic | 20.0% |
| !! | TAAAGGATTAATTGAAAAAG+AGG | - | chr4.1:13970788-13970807 | None:intergenic | 20.0% |
| !! | TAACAAACAGAAAAAGAAAT+AGG | - | chr4.1:13968986-13969005 | None:intergenic | 20.0% |
| !! | TAATTAGAGAAATTTCAATC+AGG | + | chr4.1:13970383-13970402 | MS.gene53390:intron | 20.0% |
| !! | TTTATGATTGACAAATAAAC+TGG | - | chr4.1:13968498-13968517 | None:intergenic | 20.0% |
| !!! | AACTAATTTTAAAGGTTTTC+TGG | - | chr4.1:13972079-13972098 | None:intergenic | 20.0% |
| !!! | AATGTTTTGGAATTTTTCTT+TGG | + | chr4.1:13969520-13969539 | MS.gene53390:intron | 20.0% |
| !!! | TCTTTAACTTGATATAGATA+TGG | + | chr4.1:13970978-13970997 | MS.gene53390:intron | 20.0% |
| !!! | TTATTTCCTTTTATCAAAAC+AGG | + | chr4.1:13969780-13969799 | MS.gene53390:intron | 20.0% |
| !!! | TTTTTTTTTTTGGTAAAGCA+TGG | + | chr4.1:13969215-13969234 | MS.gene53390:intron | 20.0% |
| ! | AAAAGAAAAATGTAGTTGCA+AGG | - | chr4.1:13971675-13971694 | None:intergenic | 25.0% |
| ! | AAAAGAATCAGAACTGAAAT+TGG | - | chr4.1:13969728-13969747 | None:intergenic | 25.0% |
| ! | AAAGAATCAGAACTGAAATT+GGG | - | chr4.1:13969727-13969746 | None:intergenic | 25.0% |
| ! | AAATGTAAAGTGAGGAAATA+TGG | - | chr4.1:13971704-13971723 | None:intergenic | 25.0% |
| ! | AACTTGATATAGATATGGTT+GGG | + | chr4.1:13970983-13971002 | MS.gene53390:intron | 25.0% |
| ! | AATGATTGACATCTATTCAA+TGG | - | chr4.1:13971326-13971345 | None:intergenic | 25.0% |
| ! | AGAATGCTTATATGTTACTA+GGG | + | chr4.1:13972333-13972352 | MS.gene53390:intron | 25.0% |
| ! | AGATTTGTGTGTTAAATGTT+TGG | + | chr4.1:13969698-13969717 | MS.gene53390:intron | 25.0% |
| ! | AGTTTAACTGAAAAGAGTAA+TGG | + | chr4.1:13968438-13968457 | MS.gene53390:intron | 25.0% |
| ! | ATATATGGCAAAAAAACCAT+AGG | - | chr4.1:13970099-13970118 | None:intergenic | 25.0% |
| ! | ATTGACAAATAAACTGGAAA+GGG | - | chr4.1:13968492-13968511 | None:intergenic | 25.0% |
| ! | ATTTCAATATGTAATTACGG+AGG | - | chr4.1:13971907-13971926 | None:intergenic | 25.0% |
| ! | GAAATAAATGTATGTACGTA+TGG | - | chr4.1:13968607-13968626 | None:intergenic | 25.0% |
| ! | GATCCTCGTAATTTATAATT+AGG | + | chr4.1:13971566-13971585 | MS.gene53390:intron | 25.0% |
| ! | TAACTTGATATAGATATGGT+TGG | + | chr4.1:13970982-13971001 | MS.gene53390:intron | 25.0% |
| ! | TATAGGTATCATGTGAATAA+AGG | - | chr4.1:13969900-13969919 | None:intergenic | 25.0% |
| ! | TATCAAGAAGGGTTAATAAT+TGG | + | chr4.1:13971838-13971857 | MS.gene53390:intron | 25.0% |
| ! | TGAACGTAAAATTAATTGTC+TGG | + | chr4.1:13969565-13969584 | MS.gene53390:intron | 25.0% |
| ! | TGACCTAATTATAAATTACG+AGG | - | chr4.1:13971572-13971591 | None:intergenic | 25.0% |
| ! | TGATAATATTCAAACTGTCT+TGG | + | chr4.1:13970170-13970189 | MS.gene53390:intron | 25.0% |
| ! | TGATACTGTTTATGAATAGT+TGG | + | chr4.1:13968464-13968483 | MS.gene53390:intron | 25.0% |
| ! | TGGATCAAATCAATTAATAC+TGG | + | chr4.1:13972113-13972132 | MS.gene53390:intron | 25.0% |
| ! | TGTACATCTGTAACATTTAA+TGG | + | chr4.1:13969275-13969294 | MS.gene53390:intron | 25.0% |
| ! | TTCACATGATACCTATAATA+AGG | + | chr4.1:13969903-13969922 | MS.gene53390:CDS | 25.0% |
| ! | TTTCAATATGTAATTACGGA+GGG | - | chr4.1:13971906-13971925 | None:intergenic | 25.0% |
| !! | AATTTCAGGTGAAAAATGAA+TGG | + | chr4.1:13972816-13972835 | MS.gene53390:intron | 25.0% |
| !! | CAATAGTTGTCTTAATGTTT+TGG | + | chr4.1:13969507-13969526 | MS.gene53390:intron | 25.0% |
| !! | GTATGCATAAAAACTTTTAC+TGG | + | chr4.1:13968391-13968410 | MS.gene53390:intron | 25.0% |
| !! | TAATTTTACGTTCATTGAAG+AGG | - | chr4.1:13969559-13969578 | None:intergenic | 25.0% |
| !!! | ATGAAGATTTGTTAAGTGTT+GGG | + | chr4.1:13972208-13972227 | MS.gene53390:intron | 25.0% |
| !!! | ATTTATTTCTGTTGGTCATT+TGG | + | chr4.1:13968618-13968637 | MS.gene53390:intron | 25.0% |
| !!! | GTACATACATTTATTTCTGT+TGG | + | chr4.1:13968610-13968629 | MS.gene53390:intron | 25.0% |
| !!! | TTGTAAATGAGTGTTGTTTA+TGG | + | chr4.1:13970128-13970147 | MS.gene53390:intron | 25.0% |
| !!! | TTTTTCTGGTAGTTATGATT+TGG | + | chr4.1:13969353-13969372 | MS.gene53390:intron | 25.0% |
| AAATTAGGAAGTTCTTTCCA+AGG | - | chr4.1:13969126-13969145 | None:intergenic | 30.0% | |
| AAATTGTTGTGCTGAATTGT+GGG | + | chr4.1:13968346-13968365 | MS.gene53390:intron | 30.0% | |
| AACAAAGAAAACATACTGAG+AGG | - | chr4.1:13970896-13970915 | None:intergenic | 30.0% | |
| AAGAGAATGAAAGTTATCCA+TGG | - | chr4.1:13971776-13971795 | None:intergenic | 30.0% | |
| AAGTGTGAAAAGTCAAACTT+TGG | + | chr4.1:13968566-13968585 | MS.gene53390:intron | 30.0% | |
| AATATGAAGAGTTTCAACGA+AGG | - | chr4.1:13970506-13970525 | None:intergenic | 30.0% | |
| AATATGATGATTTCTCCCTT+TGG | + | chr4.1:13971051-13971070 | MS.gene53390:intron | 30.0% | |
| AATTGCAATACTAGTGTTCT+CGG | + | chr4.1:13972047-13972066 | MS.gene53390:intron | 30.0% | |
| ACAAGAAACATCGTCAATAT+TGG | + | chr4.1:13972892-13972911 | MS.gene53390:CDS | 30.0% | |
| ACACTAGATCTTGTAAGTAA+AGG | - | chr4.1:13970805-13970824 | None:intergenic | 30.0% | |
| ACATCTGTAACATTTAATGG+AGG | + | chr4.1:13969278-13969297 | MS.gene53390:intron | 30.0% | |
| ACCATAGGCACATATTTATA+TGG | - | chr4.1:13970084-13970103 | None:intergenic | 30.0% | |
| ACCATATAAATATGTGCCTA+TGG | + | chr4.1:13970080-13970099 | MS.gene53390:intron | 30.0% | |
| ACTATGTATCTTCTTAACAG+AGG | + | chr4.1:13972626-13972645 | MS.gene53390:intron | 30.0% | |
| AGAAATAGAGTTTCCATTAG+TGG | - | chr4.1:13968222-13968241 | None:intergenic | 30.0% | |
| AGTGTGAAAAGTCAAACTTT+GGG | + | chr4.1:13968567-13968586 | MS.gene53390:intron | 30.0% | |
| ATATGATGATTTCTCCCTTT+GGG | + | chr4.1:13971052-13971071 | MS.gene53390:intron | 30.0% | |
| ATGTTGTTATGAGCAAAGAA+AGG | - | chr4.1:13972720-13972739 | None:intergenic | 30.0% | |
| ATTCAAGGATTACAACAGTT+GGG | + | chr4.1:13972654-13972673 | MS.gene53390:CDS | 30.0% | |
| CTTACATAATACTGCCAATA+TGG | + | chr4.1:13970223-13970242 | MS.gene53390:intron | 30.0% | |
| CTTATACTAAGACGTTTACT+GGG | + | chr4.1:13969624-13969643 | MS.gene53390:CDS | 30.0% | |
| GAAATGGAAGATGTTTGAAA+TGG | + | chr4.1:13972303-13972322 | MS.gene53390:intron | 30.0% | |
| GAAGATTCCATACGAAAATT+TGG | + | chr4.1:13972261-13972280 | MS.gene53390:intron | 30.0% | |
| GAATATCATGAAATTGTCGA+AGG | + | chr4.1:13972530-13972549 | MS.gene53390:CDS | 30.0% | |
| GAGAATGCTTATATGTTACT+AGG | + | chr4.1:13972332-13972351 | MS.gene53390:intron | 30.0% | |
| GATTGACAAATAAACTGGAA+AGG | - | chr4.1:13968493-13968512 | None:intergenic | 30.0% | |
| GGAAAAGAAGTTAAAGACAA+AGG | - | chr4.1:13969419-13969438 | None:intergenic | 30.0% | |
| GGAAAGAACTTCCTAATTTA+TGG | + | chr4.1:13969127-13969146 | MS.gene53390:CDS | 30.0% | |
| TATTAACCCTTCTTGATAGA+AGG | - | chr4.1:13971836-13971855 | None:intergenic | 30.0% | |
| TCTGTTAAGAAGATACATAG+TGG | - | chr4.1:13972627-13972646 | None:intergenic | 30.0% | |
| TGGAAAATTTCTGTAAGCAA+AGG | + | chr4.1:13970744-13970763 | MS.gene53390:intron | 30.0% | |
| TGGAACAAAAATATTGTCAG+TGG | + | chr4.1:13972133-13972152 | MS.gene53390:intron | 30.0% | |
| TTGTTCTGTAGTTTAGTGAT+AGG | + | chr4.1:13968644-13968663 | MS.gene53390:intron | 30.0% | |
| TTTCGAAAAGCTTGTACTTT+GGG | - | chr4.1:13969968-13969987 | None:intergenic | 30.0% | |
| TTTGGTAAAGCATGGATATA+AGG | + | chr4.1:13969223-13969242 | MS.gene53390:intron | 30.0% | |
| ! | AAAGGTCTATTTGTGTTGTT+TGG | + | chr4.1:13969454-13969473 | MS.gene53390:intron | 30.0% |
| ! | ATGATATTCCACAGTTTTCT+GGG | - | chr4.1:13972519-13972538 | None:intergenic | 30.0% |
| ! | GGTGTATCAATGATAACTTT+TGG | + | chr4.1:13970929-13970948 | MS.gene53390:intron | 30.0% |
| ! | TATGTAACTAGCACTAGTTT+AGG | - | chr4.1:13971285-13971304 | None:intergenic | 30.0% |
| ! | TGGTTCTATAATGTTGTACT+GGG | + | chr4.1:13971494-13971513 | MS.gene53390:intron | 30.0% |
| !! | AAAGGCATAATTTTGAGCTA+TGG | - | chr4.1:13971644-13971663 | None:intergenic | 30.0% |
| !! | ATCAACATCATTTTCAAGAC+TGG | - | chr4.1:13970469-13970488 | None:intergenic | 30.0% |
| !! | ATTTTGTTAGGGTTTGTTTG+TGG | - | chr4.1:13970420-13970439 | None:intergenic | 30.0% |
| !! | GTCAGTAATTCAACTTTTTC+TGG | + | chr4.1:13969339-13969358 | MS.gene53390:intron | 30.0% |
| !! | TAAATGAGTGTTGTTTATGG+TGG | + | chr4.1:13970131-13970150 | MS.gene53390:intron | 30.0% |
| !! | TTGGTTCTATAATGTTGTAC+TGG | + | chr4.1:13971493-13971512 | MS.gene53390:intron | 30.0% |
| !!! | GCAATACCTGTTTTGATAAA+AGG | - | chr4.1:13969789-13969808 | None:intergenic | 30.0% |
| AAATAAGCCTCCTAAAGAGT+GGG | - | chr4.1:13969857-13969876 | None:intergenic | 35.0% | |
| AACATAACATAGAGAACCAC+AGG | - | chr4.1:13969168-13969187 | None:intergenic | 35.0% | |
| AATGAATGGTTTCACAATGC+TGG | + | chr4.1:13972830-13972849 | MS.gene53390:CDS | 35.0% | |
| ACCAATTGCGGATCTATTAT+AGG | + | chr4.1:13970246-13970265 | MS.gene53390:intron | 35.0% | |
| ACTATGTTAACCCAGTTCAT+TGG | + | chr4.1:13971862-13971881 | MS.gene53390:intron | 35.0% | |
| ACTTTACATTTAGTACCCTG+AGG | + | chr4.1:13971713-13971732 | MS.gene53390:intron | 35.0% | |
| AGAATGAAAGTTATCCATGG+AGG | - | chr4.1:13971773-13971792 | None:intergenic | 35.0% | |
| AGCATGGATATAAGGTAACA+CGG | + | chr4.1:13969231-13969250 | MS.gene53390:intron | 35.0% | |
| AGGAAAAAGAAGTAAGCAAG+TGG | + | chr4.1:13968748-13968767 | MS.gene53390:intron | 35.0% | |
| ATTTCTCTATGATGAAGTGC+TGG | + | chr4.1:13971455-13971474 | MS.gene53390:intron | 35.0% | |
| CAAATTGTTGTGCTGAATTG+TGG | + | chr4.1:13968345-13968364 | MS.gene53390:intron | 35.0% | |
| CACAAGAACTTCTCAATTTC+AGG | + | chr4.1:13972802-13972821 | MS.gene53390:intron | 35.0% | |
| CATCATCTGAGAGATCAATA+AGG | - | chr4.1:13972758-13972777 | None:intergenic | 35.0% | |
| CTAATGAACTTCTTGTCACA+TGG | + | chr4.1:13970311-13970330 | MS.gene53390:intron | 35.0% | |
| CTTTCGAAAAGCTTGTACTT+TGG | - | chr4.1:13969969-13969988 | None:intergenic | 35.0% | |
| GAAAAAGAAGTAAGCAAGTG+GGG | + | chr4.1:13968750-13968769 | MS.gene53390:intron | 35.0% | |
| GATTCAAGGATTACAACAGT+TGG | + | chr4.1:13972653-13972672 | MS.gene53390:CDS | 35.0% | |
| GATTCCATACGAAAATTTGG+AGG | + | chr4.1:13972264-13972283 | MS.gene53390:intron | 35.0% | |
| GCTTATACTAAGACGTTTAC+TGG | + | chr4.1:13969623-13969642 | MS.gene53390:CDS | 35.0% | |
| GGAAAAAGAAGTAAGCAAGT+GGG | + | chr4.1:13968749-13968768 | MS.gene53390:intron | 35.0% | |
| GTGTGAAAAGTCAAACTTTG+GGG | + | chr4.1:13968568-13968587 | MS.gene53390:intron | 35.0% | |
| TATGGAATCTTCCTTGAACA+CGG | - | chr4.1:13972253-13972272 | None:intergenic | 35.0% | |
| TCCTGAGGTAATGCATTAAA+AGG | + | chr4.1:13969436-13969455 | MS.gene53390:intron | 35.0% | |
| TCTGAAAAGAATCTCCTTTC+TGG | + | chr4.1:13969831-13969850 | MS.gene53390:CDS | 35.0% | |
| TGAGTTCGTTAGAACCTTTA+CGG | + | chr4.1:13968857-13968876 | MS.gene53390:intron | 35.0% | |
| TGTAAAGTGAGGAAATATGG+TGG | - | chr4.1:13971701-13971720 | None:intergenic | 35.0% | |
| TGTGGTTCTCTATGTTATGT+TGG | + | chr4.1:13969167-13969186 | MS.gene53390:intron | 35.0% | |
| TTAACAGAGGAGATGATTCA+AGG | + | chr4.1:13972639-13972658 | MS.gene53390:intron | 35.0% | |
| TTAGTGATAGGAGTCTGTAT+AGG | + | chr4.1:13968656-13968675 | MS.gene53390:intron | 35.0% | |
| TTATCACAGAATAGCGTCAT+CGG | + | chr4.1:13971544-13971563 | MS.gene53390:intron | 35.0% | |
| TTATCATTGATACACCTAGC+AGG | - | chr4.1:13970925-13970944 | None:intergenic | 35.0% | |
| TTGATATAGATATGGTTGGG+TGG | + | chr4.1:13970986-13971005 | MS.gene53390:intron | 35.0% | |
| ! | ACCTTTTAATGCATTACCTC+AGG | - | chr4.1:13969440-13969459 | None:intergenic | 35.0% |
| ! | AGGGTACTAAATGTAAAGTG+AGG | - | chr4.1:13971712-13971731 | None:intergenic | 35.0% |
| ! | ATCTTGGTGTAAGAGGAAAA+AGG | + | chr4.1:13970043-13970062 | MS.gene53390:CDS | 35.0% |
| ! | CAAAGTACAAGCTTTTCGAA+AGG | + | chr4.1:13969967-13969986 | MS.gene53390:CDS | 35.0% |
| ! | CATGATATTCCACAGTTTTC+TGG | - | chr4.1:13972520-13972539 | None:intergenic | 35.0% |
| ! | GAAACCTTTTCTTCTTACTG+AGG | + | chr4.1:13968893-13968912 | MS.gene53390:intron | 35.0% |
| ! | TCAGCTTTCACTCATCATTT+TGG | + | chr4.1:13972694-13972713 | MS.gene53390:CDS | 35.0% |
| ! | TGCTTTCATTTTATGCCAAC+AGG | - | chr4.1:13971965-13971984 | None:intergenic | 35.0% |
| ! | TTTCTAGCATGGGAAATTCT+AGG | + | chr4.1:13968237-13968256 | MS.gene53390:CDS | 35.0% |
| ! | TTTTTACTGATACAGCACAG+CGG | + | chr4.1:13969066-13969085 | MS.gene53390:intron | 35.0% |
| !! | AAGATACATAGTGGCTTTAG+TGG | - | chr4.1:13972618-13972637 | None:intergenic | 35.0% |
| !! | CAGCAAGCTTTTCTAGTATT+GGG | - | chr4.1:13970615-13970634 | None:intergenic | 35.0% |
| !! | GGAAACTCTATTTCTAGCAT+GGG | + | chr4.1:13968227-13968246 | MS.gene53390:CDS | 35.0% |
| !! | GTCTTTAACTTCTTTTCCTG+AGG | + | chr4.1:13969421-13969440 | MS.gene53390:intron | 35.0% |
| !! | GTGCTATTTATGCATCTTGT+TGG | + | chr4.1:13972155-13972174 | MS.gene53390:intron | 35.0% |
| !! | TGGAAACTCTATTTCTAGCA+TGG | + | chr4.1:13968226-13968245 | MS.gene53390:CDS | 35.0% |
| !! | TTCTCTGTGTTGATGATTCA+CGG | + | chr4.1:13970193-13970212 | MS.gene53390:intron | 35.0% |
| !! | TTTGTTAAGTGTTGGGAAAG+AGG | + | chr4.1:13972215-13972234 | MS.gene53390:intron | 35.0% |
| AACTTCAACCGTTGTGCTTA+GGG | + | chr4.1:13970338-13970357 | MS.gene53390:intron | 40.0% | |
| AAGACGTTTACTGGGATTGA+TGG | + | chr4.1:13969632-13969651 | MS.gene53390:CDS | 40.0% | |
| AAGATCTTGGATCTGCTTTG+TGG | + | chr4.1:13971361-13971380 | MS.gene53390:intron | 40.0% | |
| AAGGATTACAACAGTTGGGA+TGG | + | chr4.1:13972658-13972677 | MS.gene53390:CDS | 40.0% | |
| AAGTCACAAGACAACCCAAA+GGG | - | chr4.1:13971069-13971088 | None:intergenic | 40.0% | |
| AATGCTACCACATGCATTCT+TGG | - | chr4.1:13971993-13972012 | None:intergenic | 40.0% | |
| ACCTATAATAAGGACCAACC+TGG | + | chr4.1:13969913-13969932 | MS.gene53390:CDS | 40.0% | |
| ACTTTAGCATCTCCACATCT+TGG | + | chr4.1:13970027-13970046 | MS.gene53390:CDS | 40.0% | |
| AGATGCCATGAACAAGAACA+AGG | - | chr4.1:13968280-13968299 | None:intergenic | 40.0% | |
| AGATTAGGCAACCAATGAAC+TGG | - | chr4.1:13971876-13971895 | None:intergenic | 40.0% | |
| AGCTCCTCAGTAAGAAGAAA+AGG | - | chr4.1:13968900-13968919 | None:intergenic | 40.0% | |
| AGGTAGTCCTTCTATCAAGA+AGG | + | chr4.1:13971826-13971845 | MS.gene53390:intron | 40.0% | |
| ATGGCTTCTGATTGTGAAGA+TGG | + | chr4.1:13970724-13970743 | MS.gene53390:CDS | 40.0% | |
| CAAATAAGCCTCCTAAAGAG+TGG | - | chr4.1:13969858-13969877 | None:intergenic | 40.0% | |
| CACACACACTCTCTTATTGA+GGG | - | chr4.1:13968815-13968834 | None:intergenic | 40.0% | |
| CAGCTTTGCACATAAGATCT+TGG | + | chr4.1:13971348-13971367 | MS.gene53390:intron | 40.0% | |
| CATCTCCTTGTTCTTGTTCA+TGG | + | chr4.1:13968272-13968291 | MS.gene53390:CDS | 40.0% | |
| CATCTGAGAGATCAATAAGG+AGG | - | chr4.1:13972755-13972774 | None:intergenic | 40.0% | |
| CATGAACAAGAACAAGGAGA+TGG | - | chr4.1:13968274-13968293 | None:intergenic | 40.0% | |
| CCAACAAATAAAGGAGCCAT+AGG | - | chr4.1:13970640-13970659 | None:intergenic | 40.0% | |
| CGGGTTATGTGTTGTAAACT+TGG | + | chr4.1:13972185-13972204 | MS.gene53390:intron | 40.0% | |
| CTATCAACCCTCCAAACTTT+GGG | - | chr4.1:13968727-13968746 | None:intergenic | 40.0% | |
| CTGTCAATTGAAGTCCACAA+GGG | + | chr4.1:13971402-13971421 | MS.gene53390:intron | 40.0% | |
| GATTAGGCAACCAATGAACT+GGG | - | chr4.1:13971875-13971894 | None:intergenic | 40.0% | |
| GCATATGCTTTGCAAATGCA+AGG | - | chr4.1:13970280-13970299 | None:intergenic | 40.0% | |
| GCCTATAATAGATCCGCAAT+TGG | - | chr4.1:13970250-13970269 | None:intergenic | 40.0% | |
| GCTGGTATCCATCTAAAGAT+TGG | - | chr4.1:13972394-13972413 | None:intergenic | 40.0% | |
| GGGAGGTAGGTTATAGTATA+AGG | + | chr4.1:13971422-13971441 | MS.gene53390:intron | 40.0% | |
| GGTAGTCCTTCTATCAAGAA+GGG | + | chr4.1:13971827-13971846 | MS.gene53390:intron | 40.0% | |
| GTTAGTACATTTCTCACCTG+TGG | + | chr4.1:13969149-13969168 | MS.gene53390:intron | 40.0% | |
| TATCCATCTAAAGATTGGCG+AGG | - | chr4.1:13972389-13972408 | None:intergenic | 40.0% | |
| TCACACACACTCTCTTATTG+AGG | - | chr4.1:13968816-13968835 | None:intergenic | 40.0% | |
| TCGTTAGAACCTTTACGGTT+AGG | + | chr4.1:13968862-13968881 | MS.gene53390:intron | 40.0% | |
| TCTATCAACCCTCCAAACTT+TGG | - | chr4.1:13968728-13968747 | None:intergenic | 40.0% | |
| TCTGTCAATTGAAGTCCACA+AGG | + | chr4.1:13971401-13971420 | MS.gene53390:intron | 40.0% | |
| TCTTTGTTCTACAACCTGCT+AGG | + | chr4.1:13970908-13970927 | MS.gene53390:intron | 40.0% | |
| TGCATTTGCAAAGCATATGC+TGG | + | chr4.1:13970280-13970299 | MS.gene53390:intron | 40.0% | |
| TGTAGGAGTAATTGCTCATG+TGG | + | chr4.1:13972853-13972872 | MS.gene53390:CDS | 40.0% | |
| TGTTACTGTAGATCTGCACT+TGG | + | chr4.1:13970822-13970841 | MS.gene53390:intron | 40.0% | |
| TGTTCTTGTTCATGGCATCT+TGG | + | chr4.1:13968280-13968299 | MS.gene53390:CDS | 40.0% | |
| TGTTGGGAAAGAGGTAATGA+TGG | + | chr4.1:13972224-13972243 | MS.gene53390:intron | 40.0% | |
| TTCCAGCTTCCATTTCTGTT+GGG | + | chr4.1:13970586-13970605 | MS.gene53390:intron | 40.0% | |
| TTTCCAGCTTCCATTTCTGT+TGG | + | chr4.1:13970585-13970604 | MS.gene53390:intron | 40.0% | |
| TTTCCTCTTACACCAAGATG+TGG | - | chr4.1:13970042-13970061 | None:intergenic | 40.0% | |
| ! | AATAAGAGAGTGTGTGTGAG+GGG | + | chr4.1:13968817-13968836 | MS.gene53390:intron | 40.0% |
| ! | AGTACAAGCTTTTCGAAAGG+AGG | + | chr4.1:13969970-13969989 | MS.gene53390:CDS | 40.0% |
| ! | CAATAAGAGAGTGTGTGTGA+GGG | + | chr4.1:13968816-13968835 | MS.gene53390:intron | 40.0% |
| ! | CCTATGGCTCCTTTATTTGT+TGG | + | chr4.1:13970637-13970656 | MS.gene53390:CDS | 40.0% |
| ! | GTACAAGCTTTTCGAAAGGA+GGG | + | chr4.1:13969971-13969990 | MS.gene53390:CDS | 40.0% |
| ! | TCAATAAGAGAGTGTGTGTG+AGG | + | chr4.1:13968815-13968834 | MS.gene53390:intron | 40.0% |
| ! | TGGCTCCTTTATTTGTTGGT+CGG | + | chr4.1:13970641-13970660 | MS.gene53390:CDS | 40.0% |
| ! | TTCGCCTCCAAATTTTCGTA+TGG | - | chr4.1:13972271-13972290 | None:intergenic | 40.0% |
| !! | AAAGTCAAACTTTGGGGCAA+TGG | + | chr4.1:13968574-13968593 | MS.gene53390:intron | 40.0% |
| !! | AAGTGCTGGTCTATCTCTAT+GGG | + | chr4.1:13971469-13971488 | MS.gene53390:intron | 40.0% |
| !! | AAGTTTGGAGGGTTGATAGA+AGG | + | chr4.1:13968728-13968747 | MS.gene53390:intron | 40.0% |
| !! | ACCAGGTTGGTCCTTATTAT+AGG | - | chr4.1:13969917-13969936 | None:intergenic | 40.0% |
| !! | GCAGCAAGCTTTTCTAGTAT+TGG | - | chr4.1:13970616-13970635 | None:intergenic | 40.0% |
| !! | TAATGCGGTTTGTTGACAGA+GGG | - | chr4.1:13971743-13971762 | None:intergenic | 40.0% |
| !! | TGTGTTGATGATTCACGGTT+TGG | + | chr4.1:13970198-13970217 | MS.gene53390:intron | 40.0% |
| AACAATCATCTGTGTACCCG+AGG | + | chr4.1:13971802-13971821 | MS.gene53390:intron | 45.0% | |
| AACAGAAGAGGTGGTCTGTT+GGG | - | chr4.1:13970700-13970719 | None:intergenic | 45.0% | |
| AAGTAAGCAAGTGGGGACAA+AGG | + | chr4.1:13968757-13968776 | MS.gene53390:intron | 45.0% | |
| AATGATGGCATCCGTGTTCA+AGG | + | chr4.1:13972239-13972258 | MS.gene53390:intron | 45.0% | |
| ACAAGAACAAGGAGATGGTC+TGG | - | chr4.1:13968269-13968288 | None:intergenic | 45.0% | |
| ACCAACACATCACCTTCTAC+TGG | - | chr4.1:13968688-13968707 | None:intergenic | 45.0% | |
| ACCACCTCTTCTGTTGAGAA+TGG | + | chr4.1:13970705-13970724 | MS.gene53390:CDS | 45.0% | |
| ACCAGTAGAAGGTGATGTGT+TGG | + | chr4.1:13968684-13968703 | MS.gene53390:intron | 45.0% | |
| ACTATAACCTACCTCCCTTG+TGG | - | chr4.1:13971419-13971438 | None:intergenic | 45.0% | |
| AGTAAGCAAGTGGGGACAAA+GGG | + | chr4.1:13968758-13968777 | MS.gene53390:intron | 45.0% | |
| AGTAGAAGGTGATGTGTTGG+TGG | + | chr4.1:13968687-13968706 | MS.gene53390:intron | 45.0% | |
| AGTCAGTTGTTCCTTACCGA+TGG | + | chr4.1:13970670-13970689 | MS.gene53390:CDS | 45.0% | |
| ATAGAAGGACTACCTACCTC+GGG | - | chr4.1:13971821-13971840 | None:intergenic | 45.0% | |
| ATCCTCGATAAGGAGGGAAA+TGG | + | chr4.1:13971014-13971033 | MS.gene53390:CDS | 45.0% | |
| ATCTTGGATCTGCTTTGTGG+TGG | + | chr4.1:13971364-13971383 | MS.gene53390:intron | 45.0% | |
| ATGTAATTACGGAGGGACAC+TGG | - | chr4.1:13971899-13971918 | None:intergenic | 45.0% | |
| ATTATTGGAGCTGCTAGCGA+AGG | - | chr4.1:13970367-13970386 | None:intergenic | 45.0% | |
| ATTCAACATCAACCACGTGC+TGG | - | chr4.1:13972412-13972431 | None:intergenic | 45.0% | |
| CAACTTCAACCGTTGTGCTT+AGG | + | chr4.1:13970337-13970356 | MS.gene53390:intron | 45.0% | |
| CAAGAACAAGGAGATGGTCT+GGG | - | chr4.1:13968268-13968287 | None:intergenic | 45.0% | |
| CAAGTCACAAGACAACCCAA+AGG | - | chr4.1:13971070-13971089 | None:intergenic | 45.0% | |
| CATGTGTCCAAGAATGCATG+TGG | + | chr4.1:13971983-13972002 | MS.gene53390:intron | 45.0% | |
| CCAGTCCGACCAACAAATAA+AGG | - | chr4.1:13970649-13970668 | None:intergenic | 45.0% | |
| CTGCCAATATGGACCAATTG+CGG | + | chr4.1:13970234-13970253 | MS.gene53390:intron | 45.0% | |
| CTTCAATTGACAGACACCAG+TGG | - | chr4.1:13971395-13971414 | None:intergenic | 45.0% | |
| GAAGCCATTCTCAACAGAAG+AGG | - | chr4.1:13970712-13970731 | None:intergenic | 45.0% | |
| GATAGAAGGACTACCTACCT+CGG | - | chr4.1:13971822-13971841 | None:intergenic | 45.0% | |
| GATCCGCAATTGGTCCATAT+TGG | - | chr4.1:13970240-13970259 | None:intergenic | 45.0% | |
| GTAAGGAGAAGCCCAAAGTT+TGG | + | chr4.1:13968713-13968732 | MS.gene53390:intron | 45.0% | |
| TACAACACATAACCCGACAC+TGG | - | chr4.1:13972181-13972200 | None:intergenic | 45.0% | |
| TACTGAGGAGCTTATGCTCT+GGG | + | chr4.1:13968908-13968927 | MS.gene53390:intron | 45.0% | |
| TATAGGCCTGAACCAGTAGA+AGG | + | chr4.1:13968673-13968692 | MS.gene53390:intron | 45.0% | |
| TCAATTGAAGTCCACAAGGG+AGG | + | chr4.1:13971405-13971424 | MS.gene53390:intron | 45.0% | |
| TCCAGAAGCAGTGAAAGCAA+AGG | + | chr4.1:13972469-13972488 | MS.gene53390:CDS | 45.0% | |
| TCCTTTGCTTTCACTGCTTC+TGG | - | chr4.1:13972473-13972492 | None:intergenic | 45.0% | |
| TGGTCTGTTGGGTTTACCAT+CGG | - | chr4.1:13970689-13970708 | None:intergenic | 45.0% | |
| TGGTGATCTTGCACACAGAA+CGG | + | chr4.1:13969933-13969952 | MS.gene53390:CDS | 45.0% | |
| TGGTGTAAGAGGAAAAAGGC+AGG | + | chr4.1:13970047-13970066 | MS.gene53390:CDS | 45.0% | |
| TGGTTTCACAATGCTGGTGT+AGG | + | chr4.1:13972836-13972855 | MS.gene53390:CDS | 45.0% | |
| TGTTGGGTTTACCATCGGTA+AGG | - | chr4.1:13970684-13970703 | None:intergenic | 45.0% | |
| TTACTGAGGAGCTTATGCTC+TGG | + | chr4.1:13968907-13968926 | MS.gene53390:intron | 45.0% | |
| TTATTGGAGCTGCTAGCGAA+GGG | - | chr4.1:13970366-13970385 | None:intergenic | 45.0% | |
| TTGTTCATGGCATCTTGGCT+AGG | + | chr4.1:13968285-13968304 | MS.gene53390:CDS | 45.0% | |
| TTTACTGGGATTGATGGAGC+AGG | + | chr4.1:13969638-13969657 | MS.gene53390:CDS | 45.0% | |
| TTTAGATGGATACCAGCACG+TGG | + | chr4.1:13972397-13972416 | MS.gene53390:CDS | 45.0% | |
| TTTGCTTTCACTGCTTCTGG+AGG | - | chr4.1:13972470-13972489 | None:intergenic | 45.0% | |
| ! | CATGGAGGTGTATGCTAATG+CGG | - | chr4.1:13971758-13971777 | None:intergenic | 45.0% |
| ! | CCTTTATTTGTTGGTCGGAC+TGG | + | chr4.1:13970646-13970665 | MS.gene53390:CDS | 45.0% |
| ! | GAGCAAGAGTTTGATTTCGC+AGG | - | chr4.1:13969379-13969398 | None:intergenic | 45.0% |
| ! | GGCACTCTCTTCCTCAATTT+TGG | + | chr4.1:13970950-13970969 | MS.gene53390:intron | 45.0% |
| ! | GTAGAAGGTGATGTGTTGGT+GGG | + | chr4.1:13968688-13968707 | MS.gene53390:intron | 45.0% |
| ! | TCCACAGTTTTCTGGGTATC+AGG | - | chr4.1:13972512-13972531 | None:intergenic | 45.0% |
| ! | TCTCCACATCTTGGTGTAAG+AGG | + | chr4.1:13970036-13970055 | MS.gene53390:CDS | 45.0% |
| !! | ACATCACCTTCTACTGGTTC+AGG | - | chr4.1:13968682-13968701 | None:intergenic | 45.0% |
| !! | AGAAAAGCTTGCTGCACCTA+TGG | + | chr4.1:13970621-13970640 | MS.gene53390:CDS | 45.0% |
| !! | CTAATGCGGTTTGTTGACAG+AGG | - | chr4.1:13971744-13971763 | None:intergenic | 45.0% |
| !! | GAAGTGCTGGTCTATCTCTA+TGG | + | chr4.1:13971468-13971487 | MS.gene53390:intron | 45.0% |
| AGGAGAAGCCCAAAGTTTGG+AGG | + | chr4.1:13968716-13968735 | MS.gene53390:intron | 50.0% | |
| AGTTGCAAGGTCGAGTGCAA+AGG | - | chr4.1:13971662-13971681 | None:intergenic | 50.0% | |
| ATCATCTGTGTACCCGAGGT+AGG | + | chr4.1:13971806-13971825 | MS.gene53390:intron | 50.0% | |
| ATTGGGACGCCCAACAGAAA+TGG | - | chr4.1:13970598-13970617 | None:intergenic | 50.0% | |
| CAACAGAAGAGGTGGTCTGT+TGG | - | chr4.1:13970701-13970720 | None:intergenic | 50.0% | |
| CCATCTAAAGATTGGCGAGG+AGG | - | chr4.1:13972386-13972405 | None:intergenic | 50.0% | |
| CCTCCTCGCCAATCTTTAGA+TGG | + | chr4.1:13972383-13972402 | MS.gene53390:CDS | 50.0% | |
| CGAAAGGAGGGATGATTGCT+GGG | + | chr4.1:13969983-13970002 | MS.gene53390:CDS | 50.0% | |
| CGCATTAGCATACACCTCCA+TGG | + | chr4.1:13971756-13971775 | MS.gene53390:intron | 50.0% | |
| CTCCATTTCCCTCCTTATCG+AGG | - | chr4.1:13971019-13971038 | None:intergenic | 50.0% | |
| CTCTCACTGCCTAACCGTAA+AGG | - | chr4.1:13968874-13968893 | None:intergenic | 50.0% | |
| CTGGTCTATCTCTATGGGCT+TGG | + | chr4.1:13971474-13971493 | MS.gene53390:intron | 50.0% | |
| CTTTGTGGTGGTAAGTCCAC+TGG | + | chr4.1:13971376-13971395 | MS.gene53390:intron | 50.0% | |
| GAAGGGAACCCTAAGCACAA+CGG | - | chr4.1:13970349-13970368 | None:intergenic | 50.0% | |
| GAGGGAAATGGAGCTCAGTA+AGG | + | chr4.1:13971026-13971045 | MS.gene53390:CDS | 50.0% | |
| GCCATTCTCAACAGAAGAGG+TGG | - | chr4.1:13970709-13970728 | None:intergenic | 50.0% | |
| GCCTGATACCCAGAAAACTG+TGG | + | chr4.1:13972508-13972527 | MS.gene53390:CDS | 50.0% | |
| GCTATGGCTCAGTGTCTATG+AGG | - | chr4.1:13971628-13971647 | None:intergenic | 50.0% | |
| GGAAAAAGGCAGGTCTGTTC+TGG | + | chr4.1:13970057-13970076 | MS.gene53390:intron | 50.0% | |
| GGAGAAGCCCAAAGTTTGGA+GGG | + | chr4.1:13968717-13968736 | MS.gene53390:intron | 50.0% | |
| GTTCTGTGTGCAAGATCACC+AGG | - | chr4.1:13969934-13969953 | None:intergenic | 50.0% | |
| TCCTAAAGAGTGGGCCAGAA+AGG | - | chr4.1:13969848-13969867 | None:intergenic | 50.0% | |
| TCGAAAGGAGGGATGATTGC+TGG | + | chr4.1:13969982-13970001 | MS.gene53390:CDS | 50.0% | |
| TGCATCTTGTTGGCCAGTGT+CGG | + | chr4.1:13972165-13972184 | MS.gene53390:intron | 50.0% | |
| TGTGTGCAAGATCACCAGGT+TGG | - | chr4.1:13969930-13969949 | None:intergenic | 50.0% | |
| TTGAAGTCCACAAGGGAGGT+AGG | + | chr4.1:13971409-13971428 | MS.gene53390:intron | 50.0% | |
| TTGACAGAGGGTCTACCTCA+GGG | - | chr4.1:13971731-13971750 | None:intergenic | 50.0% | |
| ! | ACTGCTTCTGGAGGAAACTG+AGG | - | chr4.1:13972461-13972480 | None:intergenic | 50.0% |
| ! | CTGCTTCTGGAGGAAACTGA+GGG | - | chr4.1:13972460-13972479 | None:intergenic | 50.0% |
| ! | TCCTTTCTGGCCCACTCTTT+AGG | + | chr4.1:13969844-13969863 | MS.gene53390:CDS | 50.0% |
| ! | TGATGTGTTGGTGGGCAGTA+AGG | + | chr4.1:13968696-13968715 | MS.gene53390:intron | 50.0% |
| ! | TTTCTGGCCCACTCTTTAGG+AGG | + | chr4.1:13969847-13969866 | MS.gene53390:CDS | 50.0% |
| !! | CGTTCATTGAAGAGGCACTC+AGG | - | chr4.1:13969551-13969570 | None:intergenic | 50.0% |
| !! | GCAGAGTTGAAAAAGCGCCT+TGG | + | chr4.1:13969106-13969125 | MS.gene53390:CDS | 50.0% |
| AAGCAAGTGGGGACAAAGGG+AGG | + | chr4.1:13968761-13968780 | MS.gene53390:intron | 55.0% | |
| ACGGAGGGACACTGGAGATT+AGG | - | chr4.1:13971891-13971910 | None:intergenic | 55.0% | |
| ACTGATACAGCACAGCGGAC+TGG | + | chr4.1:13969071-13969090 | MS.gene53390:intron | 55.0% | |
| ACTGCAGAGTCACTGCCTGT+TGG | + | chr4.1:13971947-13971966 | MS.gene53390:intron | 55.0% | |
| AGCAAGTGGGGACAAAGGGA+GGG | + | chr4.1:13968762-13968781 | MS.gene53390:intron | 55.0% | |
| AGGAGGGATGATTGCTGGGT+TGG | + | chr4.1:13969987-13970006 | MS.gene53390:CDS | 55.0% | |
| CGCCCAACAGAAATGGAAGC+TGG | - | chr4.1:13970591-13970610 | None:intergenic | 55.0% | |
| GAAACTGAGGGCCATCGGAA+GGG | - | chr4.1:13972448-13972467 | None:intergenic | 55.0% | |
| GATCTTGCACACAGAACGGC+AGG | + | chr4.1:13969937-13969956 | MS.gene53390:CDS | 55.0% | |
| GCATCTTGTTGGCCAGTGTC+GGG | + | chr4.1:13972166-13972185 | MS.gene53390:intron | 55.0% | |
| GCGCACATCCTCGATAAGGA+GGG | + | chr4.1:13971008-13971027 | MS.gene53390:CDS | 55.0% | |
| GGCAGTGACTCTGCAGTGAT+AGG | - | chr4.1:13971944-13971963 | None:intergenic | 55.0% | |
| GTTGACAGAGGGTCTACCTC+AGG | - | chr4.1:13971732-13971751 | None:intergenic | 55.0% | |
| TGGAGGAAACTGAGGGCCAT+CGG | - | chr4.1:13972453-13972472 | None:intergenic | 55.0% | |
| ! | AGTGTGTGTGAGGGGTGTAG+AGG | + | chr4.1:13968825-13968844 | MS.gene53390:intron | 55.0% |
| ! | GTGTGTGTGAGGGGTGTAGA+GGG | + | chr4.1:13968826-13968845 | MS.gene53390:intron | 55.0% |
| ! | TGAGGAGCTTATGCTCTGGG+CGG | + | chr4.1:13968911-13968930 | MS.gene53390:intron | 55.0% |
| AAGTGGGGACAAAGGGAGGG+TGG | + | chr4.1:13968765-13968784 | MS.gene53390:intron | 60.0% | |
| ACAAAGGGAGGGTGGTGAGC+TGG | + | chr4.1:13968773-13968792 | MS.gene53390:intron | 60.0% | |
| GGAAACTGAGGGCCATCGGA+AGG | - | chr4.1:13972449-13972468 | None:intergenic | 60.0% | |
| GGCGCACATCCTCGATAAGG+AGG | + | chr4.1:13971007-13971026 | MS.gene53390:CDS | 60.0% | |
| GGTGGCGCACATCCTCGATA+AGG | + | chr4.1:13971004-13971023 | MS.gene53390:CDS | 60.0% | |
| GGCCATCGGAAGGGACTGCA+GGG | - | chr4.1:13972439-13972458 | None:intergenic | 65.0% | |
| TGCCCTGCAGTCCCTTCCGA+TGG | + | chr4.1:13972434-13972453 | MS.gene53390:CDS | 65.0% | |
| GGGCCATCGGAAGGGACTGC+AGG | - | chr4.1:13972440-13972459 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13968209 | 13972928 | 13968209 | ID=MS.gene53390 |
| chr4.1 | mRNA | 13968209 | 13972928 | 13968209 | ID=MS.gene53390.t1;Parent=MS.gene53390 |
| chr4.1 | exon | 13968209 | 13968306 | 13968209 | ID=MS.gene53390.t1.exon1;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13968209 | 13968306 | 13968209 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13969081 | 13969148 | 13969081 | ID=MS.gene53390.t1.exon2;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13969081 | 13969148 | 13969081 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13969609 | 13969679 | 13969609 | ID=MS.gene53390.t1.exon3;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13969609 | 13969679 | 13969609 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13969802 | 13970068 | 13969802 | ID=MS.gene53390.t1.exon4;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13969802 | 13970068 | 13969802 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13970592 | 13970755 | 13970592 | ID=MS.gene53390.t1.exon5;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13970592 | 13970755 | 13970592 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13970833 | 13970888 | 13970833 | ID=MS.gene53390.t1.exon6;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13970833 | 13970888 | 13970833 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13970995 | 13971047 | 13970995 | ID=MS.gene53390.t1.exon7;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13970995 | 13971047 | 13970995 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13972383 | 13972551 | 13972383 | ID=MS.gene53390.t1.exon8;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13972383 | 13972551 | 13972383 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13972646 | 13972743 | 13972646 | ID=MS.gene53390.t1.exon9;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13972646 | 13972743 | 13972646 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| chr4.1 | exon | 13972824 | 13972928 | 13972824 | ID=MS.gene53390.t1.exon10;Parent=MS.gene53390.t1 |
| chr4.1 | CDS | 13972824 | 13972928 | 13972824 | ID=cds.MS.gene53390.t1;Parent=MS.gene53390.t1 |
| Gene Sequence |
| Protein sequence |
