Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54262.t1 | XP_004497487.1 | 70.1 | 556 | 166 | 0 | 1 | 556 | 1 | 556 | 5.00E-231 | 810.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54262.t1 | B9SCB6 | 50.1 | 553 | 272 | 2 | 1 | 553 | 1 | 549 | 3.8e-163 | 576.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54262.t1 | A0A1S2Y0Q7 | 70.1 | 556 | 166 | 0 | 1 | 556 | 1 | 556 | 3.6e-231 | 810.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene54262 | 0.845753 | 3.34E-59 | -1.69E-46 |
| MS.gene060119 | MS.gene54262 | 0.838581 | 2.64E-57 | -1.69E-46 |
| MS.gene060120 | MS.gene54262 | 0.848692 | 5.21E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066310 | MS.gene54262 | PPI |
| MS.gene54262 | MS.gene038982 | PPI |
| MS.gene54262 | MS.gene77594 | PPI |
| MS.gene54262 | MS.gene42723 | PPI |
| MS.gene066316 | MS.gene54262 | PPI |
| MS.gene54262 | MS.gene069726 | PPI |
| MS.gene038985 | MS.gene54262 | PPI |
| MS.gene54262 | MS.gene045736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54262.t1 | MTR_5g062230 | 68.705 | 556 | 171 | 1 | 1 | 556 | 1 | 553 | 0.0 | 805 |
| MS.gene54262.t1 | MTR_6g039440 | 68.345 | 556 | 173 | 1 | 1 | 556 | 1 | 553 | 0.0 | 802 |
| MS.gene54262.t1 | MTR_6g008560 | 67.325 | 557 | 181 | 1 | 1 | 556 | 1 | 557 | 0.0 | 800 |
| MS.gene54262.t1 | MTR_3g464190 | 66.607 | 557 | 185 | 1 | 1 | 556 | 1 | 557 | 0.0 | 781 |
| MS.gene54262.t1 | MTR_4g048460 | 67.031 | 549 | 181 | 0 | 8 | 556 | 13 | 561 | 0.0 | 774 |
| MS.gene54262.t1 | MTR_5g073200 | 67.096 | 544 | 178 | 1 | 12 | 554 | 4 | 547 | 0.0 | 753 |
| MS.gene54262.t1 | MTR_5g073260 | 65.751 | 546 | 185 | 2 | 13 | 556 | 7 | 552 | 0.0 | 750 |
| MS.gene54262.t1 | MTR_5g094620 | 63.849 | 556 | 182 | 1 | 1 | 556 | 1 | 537 | 0.0 | 746 |
| MS.gene54262.t1 | MTR_4g081460 | 58.182 | 550 | 227 | 2 | 9 | 556 | 14 | 562 | 0.0 | 676 |
| MS.gene54262.t1 | MTR_4g048460 | 66.225 | 453 | 153 | 0 | 7 | 459 | 12 | 464 | 0.0 | 627 |
| MS.gene54262.t1 | MTR_6g008560 | 66.334 | 401 | 135 | 0 | 156 | 556 | 1 | 401 | 0.0 | 576 |
| MS.gene54262.t1 | MTR_2g082010 | 44.343 | 548 | 299 | 6 | 13 | 556 | 23 | 568 | 6.93e-174 | 504 |
| MS.gene54262.t1 | MTR_2g081980 | 45.073 | 548 | 293 | 8 | 15 | 556 | 12 | 557 | 4.99e-172 | 499 |
| MS.gene54262.t1 | MTR_8g007515 | 44.909 | 550 | 295 | 6 | 13 | 556 | 9 | 556 | 8.70e-170 | 493 |
| MS.gene54262.t1 | MTR_2g082060 | 41.667 | 564 | 308 | 9 | 1 | 556 | 3 | 553 | 4.00e-158 | 463 |
| MS.gene54262.t1 | MTR_4g019550 | 41.049 | 553 | 302 | 8 | 15 | 556 | 19 | 558 | 5.10e-144 | 427 |
| MS.gene54262.t1 | MTR_2g082050 | 38.252 | 515 | 257 | 9 | 43 | 554 | 1 | 457 | 1.35e-122 | 369 |
| MS.gene54262.t1 | MTR_4g045810 | 34.982 | 546 | 344 | 4 | 13 | 554 | 41 | 579 | 3.16e-115 | 353 |
| MS.gene54262.t1 | MTR_2g064425 | 36.531 | 542 | 330 | 9 | 17 | 554 | 53 | 584 | 6.37e-105 | 327 |
| MS.gene54262.t1 | MTR_2g089130 | 34.343 | 495 | 309 | 5 | 44 | 534 | 62 | 544 | 9.46e-102 | 318 |
| MS.gene54262.t1 | MTR_2g089120 | 34.623 | 491 | 304 | 6 | 49 | 534 | 67 | 545 | 2.44e-100 | 315 |
| MS.gene54262.t1 | MTR_8g057020 | 32.907 | 547 | 358 | 6 | 10 | 554 | 48 | 587 | 5.51e-97 | 306 |
| MS.gene54262.t1 | MTR_2g064425 | 34.871 | 542 | 324 | 10 | 17 | 554 | 53 | 569 | 1.14e-94 | 300 |
| MS.gene54262.t1 | MTR_2g065450 | 32.299 | 548 | 358 | 7 | 10 | 554 | 51 | 588 | 3.96e-92 | 294 |
| MS.gene54262.t1 | MTR_4g092020 | 33.204 | 515 | 331 | 6 | 44 | 554 | 64 | 569 | 4.06e-89 | 286 |
| MS.gene54262.t1 | MTR_2g064425 | 42.700 | 363 | 196 | 7 | 17 | 376 | 53 | 406 | 1.70e-85 | 272 |
| MS.gene54262.t1 | MTR_7g010710 | 30.521 | 557 | 378 | 6 | 1 | 553 | 1 | 552 | 6.13e-85 | 274 |
| MS.gene54262.t1 | MTR_7g057340 | 66.860 | 172 | 57 | 0 | 385 | 556 | 1 | 172 | 4.03e-84 | 259 |
| MS.gene54262.t1 | MTR_4g092010 | 31.076 | 502 | 332 | 7 | 55 | 548 | 61 | 556 | 4.87e-81 | 265 |
| MS.gene54262.t1 | MTR_7g057390 | 64.535 | 172 | 58 | 1 | 385 | 556 | 1 | 169 | 1.45e-77 | 242 |
| MS.gene54262.t1 | MTR_2g064425 | 40.220 | 363 | 190 | 8 | 17 | 376 | 53 | 391 | 2.84e-75 | 245 |
| MS.gene54262.t1 | MTR_5g094530 | 56.621 | 219 | 57 | 4 | 166 | 381 | 1 | 184 | 3.19e-74 | 234 |
| MS.gene54262.t1 | MTR_2g010960 | 28.958 | 518 | 343 | 8 | 47 | 547 | 9 | 518 | 6.17e-72 | 239 |
| MS.gene54262.t1 | MTR_6g064980 | 29.697 | 495 | 335 | 8 | 54 | 539 | 13 | 503 | 3.04e-68 | 229 |
| MS.gene54262.t1 | MTR_3g465090 | 29.774 | 487 | 335 | 6 | 54 | 534 | 13 | 498 | 4.20e-68 | 229 |
| MS.gene54262.t1 | MTR_3g063170 | 29.485 | 485 | 329 | 8 | 54 | 529 | 13 | 493 | 2.50e-67 | 227 |
| MS.gene54262.t1 | MTR_3g063120 | 28.513 | 491 | 340 | 8 | 68 | 550 | 1 | 488 | 1.56e-65 | 221 |
| MS.gene54262.t1 | MTR_3g052120 | 29.365 | 504 | 345 | 9 | 54 | 550 | 13 | 512 | 6.92e-65 | 220 |
| MS.gene54262.t1 | MTR_3g063140 | 28.980 | 490 | 335 | 8 | 54 | 534 | 13 | 498 | 3.53e-64 | 218 |
| MS.gene54262.t1 | MTR_7g050990 | 60.000 | 165 | 55 | 2 | 200 | 364 | 28 | 181 | 2.33e-56 | 204 |
| MS.gene54262.t1 | MTR_6g065040 | 29.008 | 393 | 268 | 6 | 145 | 529 | 2 | 391 | 4.07e-54 | 188 |
| MS.gene54262.t1 | MTR_3g015080 | 48.256 | 172 | 51 | 2 | 385 | 556 | 1 | 134 | 1.00e-46 | 160 |
| MS.gene54262.t1 | MTR_3g058160 | 25.670 | 522 | 334 | 16 | 70 | 554 | 65 | 569 | 7.42e-38 | 147 |
| MS.gene54262.t1 | MTR_3g058160 | 25.670 | 522 | 334 | 16 | 70 | 554 | 276 | 780 | 2.02e-37 | 148 |
| MS.gene54262.t1 | MTR_3g058160 | 25.670 | 522 | 334 | 16 | 70 | 554 | 269 | 773 | 2.24e-37 | 147 |
| MS.gene54262.t1 | MTR_3g058160 | 25.670 | 522 | 334 | 16 | 70 | 554 | 256 | 760 | 2.32e-37 | 147 |
| MS.gene54262.t1 | MTR_2g064295 | 24.427 | 524 | 338 | 17 | 70 | 554 | 256 | 760 | 9.38e-36 | 142 |
| MS.gene54262.t1 | MTR_3g063160 | 31.655 | 278 | 185 | 5 | 54 | 328 | 13 | 288 | 1.30e-35 | 135 |
| MS.gene54262.t1 | MTR_3g058160 | 25.046 | 543 | 332 | 17 | 70 | 554 | 276 | 801 | 1.05e-34 | 140 |
| MS.gene54262.t1 | MTR_2g012870 | 23.397 | 577 | 394 | 18 | 10 | 554 | 194 | 754 | 3.32e-31 | 129 |
| MS.gene54262.t1 | MTR_2g012900 | 24.324 | 518 | 339 | 18 | 10 | 486 | 194 | 699 | 9.62e-30 | 124 |
| MS.gene54262.t1 | MTR_7g011663 | 29.927 | 274 | 160 | 6 | 68 | 310 | 344 | 616 | 9.01e-24 | 106 |
| MS.gene54262.t1 | MTR_7g094970 | 27.273 | 275 | 168 | 6 | 68 | 313 | 206 | 477 | 1.66e-23 | 105 |
| MS.gene54262.t1 | MTR_5g030050 | 28.409 | 264 | 156 | 7 | 73 | 312 | 3 | 257 | 8.52e-21 | 93.6 |
| MS.gene54262.t1 | MTR_7g011770 | 28.669 | 293 | 180 | 7 | 68 | 332 | 240 | 531 | 8.81e-21 | 97.1 |
| MS.gene54262.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 153 | 257 | 2 | 111 | 2.23e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54262.t1 | AT5G23960 | 39.564 | 551 | 318 | 7 | 13 | 556 | 3 | 545 | 1.61e-144 | 428 |
| MS.gene54262.t1 | AT5G23960 | 39.531 | 554 | 316 | 9 | 13 | 556 | 3 | 547 | 2.68e-143 | 425 |
| MS.gene54262.t1 | AT1G70080 | 37.163 | 557 | 340 | 7 | 8 | 556 | 57 | 611 | 2.57e-131 | 396 |
| MS.gene54262.t1 | AT3G14490 | 37.546 | 546 | 331 | 5 | 17 | 556 | 60 | 601 | 1.84e-126 | 384 |
| MS.gene54262.t1 | AT3G14520 | 36.229 | 541 | 335 | 5 | 22 | 556 | 68 | 604 | 2.28e-124 | 378 |
| MS.gene54262.t1 | AT1G31950 | 35.949 | 548 | 328 | 6 | 22 | 556 | 70 | 607 | 2.51e-123 | 375 |
| MS.gene54262.t1 | AT1G31950 | 36.229 | 541 | 335 | 5 | 22 | 556 | 70 | 606 | 2.12e-122 | 373 |
| MS.gene54262.t1 | AT3G14540 | 36.481 | 540 | 335 | 4 | 22 | 556 | 65 | 601 | 6.95e-122 | 372 |
| MS.gene54262.t1 | AT3G29410 | 35.466 | 547 | 339 | 5 | 17 | 556 | 64 | 603 | 3.35e-119 | 365 |
| MS.gene54262.t1 | AT3G32030 | 33.750 | 560 | 357 | 7 | 2 | 556 | 54 | 604 | 9.66e-117 | 358 |
| MS.gene54262.t1 | AT5G44630 | 35.401 | 548 | 337 | 8 | 18 | 554 | 14 | 555 | 1.66e-115 | 353 |
| MS.gene54262.t1 | AT4G20210 | 34.307 | 548 | 347 | 7 | 17 | 556 | 58 | 600 | 4.98e-115 | 354 |
| MS.gene54262.t1 | AT1G33750 | 34.393 | 535 | 345 | 4 | 24 | 556 | 73 | 603 | 3.54e-114 | 352 |
| MS.gene54262.t1 | AT3G29410 | 36.000 | 500 | 316 | 3 | 59 | 556 | 1 | 498 | 9.13e-114 | 347 |
| MS.gene54262.t1 | AT4G13300 | 35.065 | 539 | 339 | 7 | 25 | 556 | 20 | 554 | 2.22e-112 | 345 |
| MS.gene54262.t1 | AT4G20200 | 35.328 | 518 | 321 | 8 | 48 | 556 | 92 | 604 | 5.61e-111 | 343 |
| MS.gene54262.t1 | AT4G15870 | 34.935 | 541 | 326 | 10 | 25 | 556 | 75 | 598 | 1.27e-107 | 335 |
| MS.gene54262.t1 | AT4G13280 | 34.451 | 537 | 341 | 7 | 27 | 556 | 22 | 554 | 3.58e-107 | 332 |
| MS.gene54262.t1 | AT3G29190 | 33.333 | 519 | 330 | 7 | 48 | 556 | 89 | 601 | 2.96e-106 | 331 |
| MS.gene54262.t1 | AT1G31950 | 36.933 | 463 | 269 | 6 | 22 | 471 | 70 | 522 | 4.89e-105 | 326 |
| MS.gene54262.t1 | AT3G14540 | 37.892 | 446 | 270 | 3 | 22 | 463 | 65 | 507 | 2.26e-104 | 323 |
| MS.gene54262.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 48 | 552 | 92 | 601 | 1.06e-103 | 325 |
| MS.gene54262.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 48 | 552 | 104 | 613 | 1.69e-103 | 325 |
| MS.gene54262.t1 | AT2G23230 | 34.249 | 546 | 344 | 9 | 16 | 551 | 55 | 595 | 2.03e-101 | 319 |
| MS.gene54262.t1 | AT3G29110 | 34.191 | 544 | 349 | 8 | 17 | 554 | 55 | 595 | 8.49e-101 | 317 |
| MS.gene54262.t1 | AT1G66020 | 32.418 | 546 | 360 | 6 | 17 | 556 | 56 | 598 | 5.75e-99 | 312 |
| MS.gene54262.t1 | AT2G23230 | 34.066 | 546 | 340 | 10 | 16 | 551 | 55 | 590 | 9.45e-99 | 312 |
| MS.gene54262.t1 | AT1G48800 | 32.418 | 546 | 353 | 9 | 17 | 552 | 63 | 602 | 7.92e-96 | 304 |
| MS.gene54262.t1 | AT4G16730 | 32.413 | 543 | 344 | 10 | 28 | 554 | 2 | 537 | 1.71e-95 | 301 |
| MS.gene54262.t1 | AT4G13280 | 33.520 | 537 | 316 | 9 | 27 | 556 | 22 | 524 | 2.24e-95 | 301 |
| MS.gene54262.t1 | AT4G16730 | 32.665 | 499 | 315 | 8 | 73 | 556 | 1 | 493 | 1.05e-91 | 290 |
| MS.gene54262.t1 | AT4G16740 | 32.014 | 556 | 351 | 13 | 14 | 556 | 23 | 564 | 9.11e-89 | 285 |
| MS.gene54262.t1 | AT1G61680 | 32.265 | 499 | 326 | 4 | 54 | 546 | 77 | 569 | 3.46e-88 | 283 |
| MS.gene54262.t1 | AT2G24210 | 31.250 | 560 | 364 | 11 | 10 | 556 | 39 | 590 | 3.01e-87 | 281 |
| MS.gene54262.t1 | AT1G61680 | 31.864 | 499 | 321 | 5 | 54 | 546 | 77 | 562 | 1.33e-84 | 274 |
| MS.gene54262.t1 | AT5G48110 | 37.318 | 343 | 210 | 5 | 215 | 556 | 1 | 339 | 4.20e-84 | 265 |
| MS.gene54262.t1 | AT1G48820 | 31.169 | 539 | 321 | 11 | 17 | 549 | 63 | 557 | 5.18e-83 | 270 |
| MS.gene54262.t1 | AT3G25830 | 30.179 | 560 | 363 | 13 | 15 | 556 | 45 | 594 | 1.61e-80 | 264 |
| MS.gene54262.t1 | AT3G25820 | 30.179 | 560 | 363 | 13 | 15 | 556 | 45 | 594 | 1.61e-80 | 264 |
| MS.gene54262.t1 | AT3G25810 | 30.357 | 560 | 365 | 11 | 15 | 556 | 45 | 597 | 1.72e-79 | 261 |
| MS.gene54262.t1 | AT4G16740 | 34.828 | 379 | 226 | 8 | 14 | 381 | 23 | 391 | 5.68e-69 | 228 |
| MS.gene54262.t1 | AT1G66020 | 34.688 | 369 | 232 | 6 | 17 | 379 | 56 | 421 | 2.19e-68 | 227 |
| MS.gene54262.t1 | AT3G25820 | 32.300 | 387 | 241 | 9 | 15 | 389 | 45 | 422 | 4.93e-62 | 211 |
| MS.gene54262.t1 | AT4G16740 | 35.061 | 328 | 193 | 7 | 14 | 330 | 23 | 341 | 9.54e-59 | 200 |
| MS.gene54262.t1 | AT4G16740 | 35.061 | 328 | 193 | 7 | 14 | 330 | 23 | 341 | 9.54e-59 | 200 |
| MS.gene54262.t1 | AT3G25820 | 33.028 | 327 | 200 | 7 | 15 | 330 | 45 | 363 | 2.40e-54 | 189 |
| MS.gene54262.t1 | AT3G25820 | 33.028 | 327 | 200 | 7 | 15 | 330 | 45 | 363 | 2.40e-54 | 189 |
| MS.gene54262.t1 | AT1G79460 | 25.095 | 526 | 335 | 20 | 70 | 556 | 274 | 779 | 3.65e-32 | 132 |
| MS.gene54262.t1 | AT1G61120 | 23.228 | 508 | 362 | 9 | 68 | 556 | 286 | 784 | 5.67e-27 | 116 |
| MS.gene54262.t1 | AT4G02780 | 29.389 | 262 | 153 | 6 | 68 | 300 | 329 | 587 | 2.37e-23 | 105 |
Find 0 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | - | 43205:18173-18192 | MS.gene54262:intergenic | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | + | 43205:16154-16173 | MS.gene54262:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | + | 43205:16813-16832 | MS.gene54262:intron | 10.0% |
| !! | ACAAATTGATAAACTAAAAA+AGG | + | 43205:15543-15562 | MS.gene54262:CDS | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | - | 43205:16809-16828 | MS.gene54262:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | - | 43205:15381-15400 | MS.gene54262:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | + | 43205:15965-15984 | MS.gene54262:intron | 15.0% |
| !! | TTAACAACATTTAATTACAT+AGG | + | 43205:18131-18150 | MS.gene54262:intron | 15.0% |
| !! | TTGTAGAATTAATATTACAA+AGG | - | 43205:18048-18067 | MS.gene54262:intergenic | 15.0% |
| !!! | AAAAAATTATTTTCTATCAG+TGG | - | 43205:15995-16014 | MS.gene54262:intergenic | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | + | 43205:17667-17686 | MS.gene54262:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | - | 43205:16751-16770 | MS.gene54262:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | + | 43205:16316-16335 | MS.gene54262:intron | 15.0% |
| !!! | ATTTCATTTTAAACTTTGTA+TGG | + | 43205:17566-17585 | MS.gene54262:intron | 15.0% |
| !!! | CATTTTTTATGTTTTCAATT+TGG | + | 43205:15832-15851 | MS.gene54262:intron | 15.0% |
| !!! | TTTAATTACATAGGTTTTTT+TGG | + | 43205:18140-18159 | MS.gene54262:intron | 15.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | - | 43205:15454-15473 | MS.gene54262:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | + | 43205:16166-16185 | MS.gene54262:intron | 20.0% |
| !! | AATTGATAAACTAAAAAAGG+AGG | + | 43205:15546-15565 | MS.gene54262:CDS | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | - | 43205:16093-16112 | MS.gene54262:intergenic | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+TGG | + | 43205:17806-17825 | MS.gene54262:intron | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | + | 43205:17307-17326 | MS.gene54262:intron | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | - | 43205:17104-17123 | MS.gene54262:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | + | 43205:15498-15517 | MS.gene54262:intron | 20.0% |
| !!! | TATCTTGACATTTTAATTAG+TGG | + | 43205:18074-18093 | MS.gene54262:intron | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | + | 43205:17303-17322 | MS.gene54262:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | + | 43205:16816-16835 | MS.gene54262:intron | 20.0% |
| ! | AAACTTTGTATGGTTATCAA+AGG | + | 43205:17576-17595 | MS.gene54262:intron | 25.0% |
| ! | AACTTTGTATGGTTATCAAA+GGG | + | 43205:17577-17596 | MS.gene54262:intron | 25.0% |
| ! | AAGAAAAATGTATCATCATG+AGG | + | 43205:17882-17901 | MS.gene54262:intron | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | - | 43205:17553-17572 | MS.gene54262:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | - | 43205:16648-16667 | MS.gene54262:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | - | 43205:16975-16994 | MS.gene54262:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | + | 43205:16648-16667 | MS.gene54262:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | + | 43205:15694-15713 | MS.gene54262:CDS | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | + | 43205:17962-17981 | MS.gene54262:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | - | 43205:16647-16666 | MS.gene54262:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | + | 43205:15863-15882 | MS.gene54262:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | - | 43205:15799-15818 | MS.gene54262:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | + | 43205:15663-15682 | MS.gene54262:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | + | 43205:15936-15955 | MS.gene54262:intron | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | - | 43205:17728-17747 | MS.gene54262:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | + | 43205:17021-17040 | MS.gene54262:CDS | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | + | 43205:17274-17293 | MS.gene54262:intron | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | - | 43205:17453-17472 | MS.gene54262:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | - | 43205:17452-17471 | MS.gene54262:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | + | 43205:17306-17325 | MS.gene54262:intron | 25.0% |
| !!! | TATCCATGGTTTTATTAACT+CGG | + | 43205:17820-17839 | MS.gene54262:intron | 25.0% |
| AAAAGAAAATTGACAACGCT+TGG | + | 43205:18660-18679 | MS.gene54262:CDS | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | - | 43205:15357-15376 | MS.gene54262:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | - | 43205:15356-15375 | MS.gene54262:intergenic | 30.0% | |
| AATTTACCCATCTTCTATCT+TGG | + | 43205:17186-17205 | MS.gene54262:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | - | 43205:16918-16937 | MS.gene54262:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | - | 43205:16070-16089 | MS.gene54262:intergenic | 30.0% | |
| CACATATCAACAATATCAAG+TGG | + | 43205:18289-18308 | MS.gene54262:CDS | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | + | 43205:15150-15169 | MS.gene54262:CDS | 30.0% | |
| GAACAAGAAATGAAGAAAGA+AGG | + | 43205:17407-17426 | MS.gene54262:CDS | 30.0% | |
| GAGGGAATATGATTTGAATA+GGG | + | 43205:18616-18635 | MS.gene54262:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | + | 43205:16459-16478 | MS.gene54262:CDS | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | + | 43205:18598-18617 | MS.gene54262:CDS | 30.0% | |
| TAACTATATACCAACAACAG+AGG | + | 43205:18258-18277 | MS.gene54262:CDS | 30.0% | |
| TGAGGGAATATGATTTGAAT+AGG | + | 43205:18615-18634 | MS.gene54262:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | + | 43205:16465-16484 | MS.gene54262:CDS | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | + | 43205:16819-16838 | MS.gene54262:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | - | 43205:16933-16952 | MS.gene54262:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | + | 43205:17702-17721 | MS.gene54262:intron | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | + | 43205:15622-15641 | MS.gene54262:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | + | 43205:15935-15954 | MS.gene54262:intron | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | + | 43205:17367-17386 | MS.gene54262:CDS | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | - | 43205:16702-16721 | MS.gene54262:intergenic | 30.0% |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | - | 43205:18648-18667 | MS.gene54262:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | - | 43205:16934-16953 | MS.gene54262:intergenic | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | + | 43205:15423-15442 | MS.gene54262:intron | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | + | 43205:17032-17051 | MS.gene54262:CDS | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | - | 43205:18661-18680 | MS.gene54262:intergenic | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | + | 43205:15293-15312 | MS.gene54262:intron | 30.0% |
| !! | CTCTTACTTCTTTTAAGAAG+GGG | - | 43205:17451-17470 | MS.gene54262:intergenic | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | - | 43205:16208-16227 | MS.gene54262:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | - | 43205:15605-15624 | MS.gene54262:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | + | 43205:16886-16905 | MS.gene54262:CDS | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | - | 43205:15604-15623 | MS.gene54262:intergenic | 30.0% |
| AACTTCAGTGAAACATTGGT+CGG | + | 43205:16391-16410 | MS.gene54262:CDS | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | + | 43205:18219-18238 | MS.gene54262:CDS | 35.0% | |
| ACACACGTAAGAATAGGTAA+CGG | - | 43205:18725-18744 | MS.gene54262:intergenic | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | + | 43205:18328-18347 | MS.gene54262:CDS | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | + | 43205:16357-16376 | MS.gene54262:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | + | 43205:16697-16716 | MS.gene54262:CDS | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | + | 43205:16387-16406 | MS.gene54262:CDS | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | + | 43205:18676-18695 | MS.gene54262:CDS | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | + | 43205:18597-18616 | MS.gene54262:CDS | 35.0% | |
| GAACCGAGTTAATAAAACCA+TGG | - | 43205:17826-17845 | MS.gene54262:intergenic | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | - | 43205:17982-18001 | MS.gene54262:intergenic | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | - | 43205:15342-15361 | MS.gene54262:intergenic | 35.0% | |
| GACAAAAGACATCTTTGACT+GGG | + | 43205:18360-18379 | MS.gene54262:CDS | 35.0% | |
| GATGACACATATGATGCATA+TGG | + | 43205:16989-17008 | MS.gene54262:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | - | 43205:17356-17375 | MS.gene54262:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | + | 43205:18327-18346 | MS.gene54262:CDS | 35.0% | |
| TAGCAACCAAGATAGAAGAT+GGG | - | 43205:17195-17214 | MS.gene54262:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | + | 43205:17322-17341 | MS.gene54262:intron | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | + | 43205:15228-15247 | MS.gene54262:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | + | 43205:17586-17605 | MS.gene54262:intron | 35.0% | |
| TTAGCAACCAAGATAGAAGA+TGG | - | 43205:17196-17215 | MS.gene54262:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | - | 43205:16932-16951 | MS.gene54262:intergenic | 35.0% | |
| TTGAGAACACACGTAAGAAT+AGG | - | 43205:18731-18750 | MS.gene54262:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | - | 43205:16541-16560 | MS.gene54262:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | + | 43205:16471-16490 | MS.gene54262:CDS | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | - | 43205:16696-16715 | MS.gene54262:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | + | 43205:17142-17161 | MS.gene54262:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | + | 43205:15621-15640 | MS.gene54262:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | - | 43205:18397-18416 | MS.gene54262:intergenic | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | + | 43205:16657-16676 | MS.gene54262:CDS | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | - | 43205:15160-15179 | MS.gene54262:intergenic | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | - | 43205:17714-17733 | MS.gene54262:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | - | 43205:15232-15251 | MS.gene54262:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | + | 43205:15743-15762 | MS.gene54262:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | + | 43205:16823-16842 | MS.gene54262:intron | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | - | 43205:16209-16228 | MS.gene54262:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | + | 43205:15744-15763 | MS.gene54262:CDS | 35.0% |
| !! | TTCTTTTAAGAAGGGGTCAA+GGG | - | 43205:17444-17463 | MS.gene54262:intergenic | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | + | 43205:16885-16904 | MS.gene54262:CDS | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | - | 43205:15205-15224 | MS.gene54261:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | - | 43205:15204-15223 | MS.gene54261:intergenic | 40.0% | |
| AAACAGTTTGAGCAGAAACG+AGG | + | 43205:18563-18582 | MS.gene54262:intron | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | - | 43205:16449-16468 | MS.gene54262:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | - | 43205:16872-16891 | MS.gene54262:intergenic | 40.0% | |
| AGGACATGTTTCTTCGTACT+TGG | + | 43205:18583-18602 | MS.gene54262:CDS | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | - | 43205:15741-15760 | MS.gene54262:intergenic | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | - | 43205:18245-18264 | MS.gene54262:intergenic | 40.0% | |
| CGACAAAAGACATCTTTGAC+TGG | + | 43205:18359-18378 | MS.gene54262:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | + | 43205:15585-15604 | MS.gene54262:CDS | 40.0% | |
| GATAACTACACACACTCTGA+CGG | + | 43205:18788-18807 | MS.gene54262:CDS | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | + | 43205:15519-15538 | MS.gene54262:intron | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | - | 43205:16626-16645 | MS.gene54262:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | + | 43205:16438-16457 | MS.gene54262:CDS | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | + | 43205:17325-17344 | MS.gene54262:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | + | 43205:17334-17353 | MS.gene54262:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | + | 43205:18414-18433 | MS.gene54262:CDS | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | - | 43205:16531-16550 | MS.gene54262:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | + | 43205:18322-18341 | MS.gene54262:CDS | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | + | 43205:16027-16046 | MS.gene54262:intron | 40.0% |
| !! | ATAGGTAACGGAACTTCAGT+TGG | - | 43205:18713-18732 | MS.gene54262:intergenic | 40.0% |
| !! | CAATCTCTCGCGTTTTATTG+AGG | + | 43205:18748-18767 | MS.gene54262:CDS | 40.0% |
| !! | CTTCTTTTAAGAAGGGGTCA+AGG | - | 43205:17445-17464 | MS.gene54262:intergenic | 40.0% |
| AACATTGGTCGGAGATGTTG+AGG | + | 43205:16402-16421 | MS.gene54262:CDS | 45.0% | |
| AACCAATTCAAGGACGAGCA+AGG | + | 43205:16367-16386 | MS.gene54262:CDS | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | - | 43205:18318-18337 | MS.gene54262:intergenic | 45.0% | |
| ACATTGGTCGGAGATGTTGA+GGG | + | 43205:16403-16422 | MS.gene54262:CDS | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | + | 43205:15192-15211 | MS.gene54262:CDS | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | + | 43205:16927-16946 | MS.gene54262:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | + | 43205:18303-18322 | MS.gene54262:CDS | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | + | 43205:18407-18426 | MS.gene54262:CDS | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | + | 43205:16585-16604 | MS.gene54262:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | + | 43205:15778-15797 | MS.gene54262:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | + | 43205:18413-18432 | MS.gene54262:CDS | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | + | 43205:18227-18246 | MS.gene54262:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | + | 43205:16445-16464 | MS.gene54262:CDS | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | + | 43205:16690-16709 | MS.gene54262:CDS | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | + | 43205:18435-18454 | MS.gene54262:CDS | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | - | 43205:18319-18338 | MS.gene54262:intergenic | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | - | 43205:16530-16549 | MS.gene54262:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | - | 43205:18271-18290 | MS.gene54262:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | - | 43205:18225-18244 | MS.gene54262:intergenic | 45.0% | |
| TGTGCCGCAGTATTCATATC+AGG | - | 43205:15526-15545 | MS.gene54262:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | - | 43205:16372-16391 | MS.gene54262:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | - | 43205:16598-16617 | MS.gene54262:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | + | 43205:16829-16848 | MS.gene54262:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | + | 43205:15752-15771 | MS.gene54262:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | + | 43205:15760-15779 | MS.gene54262:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | + | 43205:16007-16026 | MS.gene54262:intron | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | - | 43205:16527-16546 | MS.gene54262:intergenic | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | + | 43205:15191-15210 | MS.gene54262:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | + | 43205:16578-16597 | MS.gene54262:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | + | 43205:15193-15212 | MS.gene54262:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | + | 43205:16501-16520 | MS.gene54262:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | + | 43205:16484-16503 | MS.gene54262:CDS | 50.0% |
| AATCTCCCCAAACGCTAGGG+TGG | - | 43205:15201-15220 | MS.gene54262:intergenic | 55.0% | |
| AGGACTCAATCGGGTGGCCA+TGG | - | 43205:16521-16540 | MS.gene54262:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | - | 43205:16513-16532 | MS.gene54262:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43205 | gene | 15133 | 18862 | 15133 | ID=MS.gene54262 |
| 43205 | mRNA | 15133 | 18862 | 15133 | ID=MS.gene54262.t1;Parent=MS.gene54262 |
| 43205 | exon | 15133 | 15249 | 15133 | ID=MS.gene54262.t1.exon1;Parent=MS.gene54262.t1 |
| 43205 | CDS | 15133 | 15249 | 15133 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| 43205 | exon | 15520 | 15799 | 15520 | ID=MS.gene54262.t1.exon2;Parent=MS.gene54262.t1 |
| 43205 | CDS | 15520 | 15799 | 15520 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| 43205 | exon | 16359 | 16731 | 16359 | ID=MS.gene54262.t1.exon3;Parent=MS.gene54262.t1 |
| 43205 | CDS | 16359 | 16731 | 16359 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| 43205 | exon | 16835 | 17053 | 16835 | ID=MS.gene54262.t1.exon4;Parent=MS.gene54262.t1 |
| 43205 | CDS | 16835 | 17053 | 16835 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| 43205 | exon | 17325 | 17463 | 17325 | ID=MS.gene54262.t1.exon5;Parent=MS.gene54262.t1 |
| 43205 | CDS | 17325 | 17463 | 17325 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| 43205 | exon | 18208 | 18456 | 18208 | ID=MS.gene54262.t1.exon6;Parent=MS.gene54262.t1 |
| 43205 | CDS | 18208 | 18456 | 18208 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| 43205 | exon | 18569 | 18862 | 18569 | ID=MS.gene54262.t1.exon7;Parent=MS.gene54262.t1 |
| 43205 | CDS | 18569 | 18862 | 18569 | ID=cds.MS.gene54262.t1;Parent=MS.gene54262.t1 |
| Gene Sequence |
| Protein sequence |
