Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54263.t1 | XP_004497487.1 | 69.3 | 459 | 141 | 0 | 1 | 459 | 1 | 459 | 2.20E-184 | 655.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54263.t1 | B9SCB6 | 49.9 | 459 | 226 | 2 | 1 | 459 | 1 | 455 | 6.9e-134 | 478.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54263.t1 | A0A1S2Y0Q7 | 69.3 | 459 | 141 | 0 | 1 | 459 | 1 | 459 | 1.6e-184 | 655.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene54263 | 0.897841 | 9.51E-77 | -1.69E-46 |
| MS.gene060119 | MS.gene54263 | 0.886588 | 3.00E-72 | -1.69E-46 |
| MS.gene060120 | MS.gene54263 | 0.87718 | 7.72E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54263 | MS.gene069726 | PPI |
| MS.gene066310 | MS.gene54263 | PPI |
| MS.gene54263 | MS.gene038982 | PPI |
| MS.gene54263 | MS.gene066316 | PPI |
| MS.gene54263 | MS.gene77594 | PPI |
| MS.gene038985 | MS.gene54263 | PPI |
| MS.gene54263 | MS.gene045736 | PPI |
| MS.gene54263 | MS.gene42723 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54263.t1 | MTR_5g062230 | 69.281 | 459 | 138 | 1 | 1 | 459 | 1 | 456 | 0.0 | 667 |
| MS.gene54263.t1 | MTR_6g008560 | 67.609 | 460 | 148 | 1 | 1 | 459 | 1 | 460 | 0.0 | 661 |
| MS.gene54263.t1 | MTR_6g039440 | 68.410 | 459 | 142 | 1 | 1 | 459 | 1 | 456 | 0.0 | 657 |
| MS.gene54263.t1 | MTR_3g464190 | 66.739 | 460 | 152 | 1 | 1 | 459 | 1 | 460 | 0.0 | 647 |
| MS.gene54263.t1 | MTR_4g048460 | 65.929 | 452 | 154 | 0 | 8 | 459 | 13 | 464 | 0.0 | 626 |
| MS.gene54263.t1 | MTR_4g048460 | 65.929 | 452 | 154 | 0 | 8 | 459 | 13 | 464 | 0.0 | 626 |
| MS.gene54263.t1 | MTR_5g073200 | 67.261 | 449 | 146 | 1 | 12 | 459 | 4 | 452 | 0.0 | 613 |
| MS.gene54263.t1 | MTR_5g094620 | 63.834 | 459 | 147 | 1 | 1 | 459 | 1 | 440 | 0.0 | 613 |
| MS.gene54263.t1 | MTR_5g073260 | 65.924 | 449 | 151 | 2 | 13 | 459 | 7 | 455 | 0.0 | 609 |
| MS.gene54263.t1 | MTR_4g081460 | 58.940 | 453 | 183 | 2 | 9 | 459 | 14 | 465 | 0.0 | 565 |
| MS.gene54263.t1 | MTR_6g008560 | 67.105 | 304 | 100 | 0 | 156 | 459 | 1 | 304 | 1.62e-152 | 439 |
| MS.gene54263.t1 | MTR_2g082010 | 44.222 | 450 | 247 | 4 | 13 | 459 | 23 | 471 | 1.06e-141 | 418 |
| MS.gene54263.t1 | MTR_2g081980 | 45.089 | 448 | 240 | 6 | 15 | 457 | 12 | 458 | 2.78e-141 | 416 |
| MS.gene54263.t1 | MTR_8g007515 | 45.556 | 450 | 239 | 4 | 13 | 457 | 9 | 457 | 1.41e-140 | 414 |
| MS.gene54263.t1 | MTR_2g082060 | 42.241 | 464 | 260 | 6 | 1 | 457 | 3 | 465 | 1.59e-136 | 404 |
| MS.gene54263.t1 | MTR_4g019550 | 41.333 | 450 | 242 | 6 | 15 | 454 | 19 | 456 | 1.14e-116 | 353 |
| MS.gene54263.t1 | MTR_4g045810 | 36.667 | 450 | 274 | 4 | 13 | 458 | 41 | 483 | 1.54e-100 | 312 |
| MS.gene54263.t1 | MTR_2g064425 | 39.503 | 443 | 255 | 8 | 17 | 455 | 53 | 486 | 1.50e-96 | 302 |
| MS.gene54263.t1 | MTR_2g082050 | 38.084 | 407 | 195 | 6 | 53 | 457 | 9 | 360 | 4.38e-93 | 289 |
| MS.gene54263.t1 | MTR_2g089130 | 35.646 | 418 | 255 | 3 | 44 | 458 | 62 | 468 | 2.02e-90 | 286 |
| MS.gene54263.t1 | MTR_8g057020 | 37.890 | 417 | 249 | 6 | 10 | 423 | 48 | 457 | 3.00e-90 | 286 |
| MS.gene54263.t1 | MTR_2g089120 | 35.749 | 414 | 251 | 4 | 49 | 458 | 67 | 469 | 2.58e-89 | 283 |
| MS.gene54263.t1 | MTR_2g064425 | 42.975 | 363 | 195 | 7 | 17 | 376 | 53 | 406 | 2.39e-87 | 274 |
| MS.gene54263.t1 | MTR_2g064425 | 37.472 | 443 | 249 | 9 | 17 | 455 | 53 | 471 | 3.22e-86 | 275 |
| MS.gene54263.t1 | MTR_2g065450 | 34.521 | 449 | 282 | 6 | 10 | 455 | 51 | 490 | 1.18e-83 | 269 |
| MS.gene54263.t1 | MTR_2g064425 | 40.496 | 363 | 189 | 8 | 17 | 376 | 53 | 391 | 4.76e-77 | 247 |
| MS.gene54263.t1 | MTR_5g094530 | 56.621 | 219 | 57 | 4 | 166 | 381 | 1 | 184 | 1.48e-75 | 235 |
| MS.gene54263.t1 | MTR_4g092020 | 33.094 | 417 | 271 | 4 | 44 | 459 | 64 | 473 | 5.59e-72 | 238 |
| MS.gene54263.t1 | MTR_4g092010 | 32.178 | 404 | 268 | 4 | 55 | 455 | 61 | 461 | 4.44e-69 | 230 |
| MS.gene54263.t1 | MTR_7g010710 | 31.121 | 437 | 292 | 6 | 1 | 433 | 1 | 432 | 1.91e-66 | 223 |
| MS.gene54263.t1 | MTR_2g010960 | 28.640 | 419 | 284 | 4 | 47 | 455 | 9 | 422 | 2.13e-59 | 203 |
| MS.gene54263.t1 | MTR_6g064980 | 30.488 | 410 | 273 | 7 | 54 | 455 | 13 | 418 | 4.42e-58 | 199 |
| MS.gene54263.t1 | MTR_7g050990 | 60.000 | 165 | 55 | 2 | 200 | 364 | 28 | 181 | 1.29e-57 | 204 |
| MS.gene54263.t1 | MTR_3g465090 | 29.975 | 407 | 279 | 5 | 54 | 455 | 13 | 418 | 2.82e-56 | 195 |
| MS.gene54263.t1 | MTR_3g063170 | 29.512 | 410 | 277 | 7 | 54 | 455 | 13 | 418 | 7.18e-56 | 194 |
| MS.gene54263.t1 | MTR_3g063120 | 28.861 | 395 | 273 | 6 | 68 | 455 | 1 | 394 | 1.48e-53 | 187 |
| MS.gene54263.t1 | MTR_3g052120 | 29.412 | 408 | 280 | 7 | 54 | 455 | 13 | 418 | 7.56e-53 | 186 |
| MS.gene54263.t1 | MTR_3g063140 | 29.024 | 410 | 279 | 7 | 54 | 455 | 13 | 418 | 1.96e-52 | 184 |
| MS.gene54263.t1 | MTR_6g065040 | 29.560 | 318 | 214 | 5 | 145 | 455 | 2 | 316 | 3.40e-43 | 157 |
| MS.gene54263.t1 | MTR_3g063160 | 31.655 | 278 | 185 | 5 | 54 | 328 | 13 | 288 | 2.21e-36 | 135 |
| MS.gene54263.t1 | MTR_3g058160 | 27.952 | 415 | 260 | 12 | 70 | 455 | 65 | 469 | 3.77e-36 | 140 |
| MS.gene54263.t1 | MTR_3g058160 | 27.952 | 415 | 260 | 12 | 70 | 455 | 256 | 660 | 7.34e-36 | 141 |
| MS.gene54263.t1 | MTR_3g058160 | 27.952 | 415 | 260 | 12 | 70 | 455 | 269 | 673 | 8.86e-36 | 141 |
| MS.gene54263.t1 | MTR_3g058160 | 27.952 | 415 | 260 | 12 | 70 | 455 | 276 | 680 | 9.41e-36 | 141 |
| MS.gene54263.t1 | MTR_2g064295 | 27.368 | 380 | 241 | 11 | 70 | 421 | 256 | 628 | 2.18e-35 | 140 |
| MS.gene54263.t1 | MTR_3g058160 | 27.064 | 436 | 258 | 13 | 70 | 455 | 276 | 701 | 3.21e-33 | 133 |
| MS.gene54263.t1 | MTR_7g057390 | 70.667 | 75 | 22 | 0 | 385 | 459 | 1 | 75 | 1.78e-30 | 116 |
| MS.gene54263.t1 | MTR_7g057340 | 70.667 | 75 | 22 | 0 | 385 | 459 | 1 | 75 | 8.04e-30 | 114 |
| MS.gene54263.t1 | MTR_2g012870 | 25.000 | 480 | 311 | 18 | 10 | 457 | 194 | 656 | 3.91e-28 | 118 |
| MS.gene54263.t1 | MTR_2g012900 | 23.926 | 489 | 319 | 18 | 10 | 457 | 194 | 670 | 3.74e-27 | 115 |
| MS.gene54263.t1 | MTR_7g011663 | 29.927 | 274 | 160 | 6 | 68 | 310 | 344 | 616 | 1.56e-24 | 107 |
| MS.gene54263.t1 | MTR_7g094970 | 27.273 | 275 | 168 | 6 | 68 | 313 | 206 | 477 | 3.94e-24 | 105 |
| MS.gene54263.t1 | MTR_7g011770 | 28.669 | 293 | 180 | 7 | 68 | 332 | 240 | 531 | 1.80e-21 | 97.8 |
| MS.gene54263.t1 | MTR_5g030050 | 28.409 | 264 | 156 | 7 | 73 | 312 | 3 | 257 | 2.09e-21 | 94.7 |
| MS.gene54263.t1 | MTR_3g015080 | 48.000 | 75 | 18 | 1 | 385 | 459 | 1 | 54 | 2.53e-13 | 67.4 |
| MS.gene54263.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 153 | 257 | 2 | 111 | 1.76e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54263.t1 | AT5G23960 | 38.717 | 452 | 267 | 5 | 13 | 459 | 3 | 449 | 7.18e-113 | 343 |
| MS.gene54263.t1 | AT5G23960 | 38.681 | 455 | 265 | 7 | 13 | 459 | 3 | 451 | 1.81e-111 | 340 |
| MS.gene54263.t1 | AT1G70080 | 37.199 | 457 | 278 | 6 | 8 | 457 | 57 | 511 | 3.90e-110 | 338 |
| MS.gene54263.t1 | AT1G31950 | 37.333 | 450 | 260 | 5 | 22 | 459 | 70 | 509 | 2.20e-106 | 326 |
| MS.gene54263.t1 | AT3G14540 | 38.009 | 442 | 267 | 3 | 22 | 459 | 65 | 503 | 1.60e-105 | 323 |
| MS.gene54263.t1 | AT1G31950 | 37.333 | 450 | 260 | 5 | 22 | 459 | 70 | 509 | 2.76e-105 | 325 |
| MS.gene54263.t1 | AT1G31950 | 37.923 | 443 | 266 | 4 | 22 | 459 | 70 | 508 | 4.74e-105 | 325 |
| MS.gene54263.t1 | AT3G14520 | 37.246 | 443 | 269 | 4 | 22 | 459 | 68 | 506 | 1.17e-104 | 324 |
| MS.gene54263.t1 | AT3G14540 | 38.009 | 442 | 267 | 3 | 22 | 459 | 65 | 503 | 1.86e-104 | 323 |
| MS.gene54263.t1 | AT3G14490 | 37.277 | 448 | 272 | 4 | 17 | 459 | 60 | 503 | 1.84e-102 | 318 |
| MS.gene54263.t1 | AT3G29410 | 36.889 | 450 | 270 | 5 | 17 | 459 | 64 | 506 | 4.56e-97 | 304 |
| MS.gene54263.t1 | AT3G32030 | 34.199 | 462 | 291 | 6 | 2 | 459 | 54 | 506 | 9.24e-95 | 298 |
| MS.gene54263.t1 | AT5G44630 | 35.762 | 453 | 274 | 8 | 18 | 459 | 14 | 460 | 9.79e-94 | 294 |
| MS.gene54263.t1 | AT4G20210 | 34.590 | 451 | 282 | 7 | 17 | 459 | 58 | 503 | 1.49e-92 | 292 |
| MS.gene54263.t1 | AT1G33750 | 35.616 | 438 | 276 | 4 | 24 | 459 | 73 | 506 | 3.85e-92 | 291 |
| MS.gene54263.t1 | AT3G29410 | 37.469 | 403 | 248 | 3 | 59 | 459 | 1 | 401 | 6.43e-91 | 285 |
| MS.gene54263.t1 | AT4G15870 | 35.892 | 443 | 259 | 9 | 25 | 459 | 75 | 500 | 3.12e-90 | 286 |
| MS.gene54263.t1 | AT4G20200 | 36.580 | 421 | 253 | 8 | 48 | 459 | 92 | 507 | 3.29e-90 | 286 |
| MS.gene54263.t1 | AT4G13300 | 34.694 | 441 | 278 | 6 | 25 | 459 | 20 | 456 | 4.27e-88 | 279 |
| MS.gene54263.t1 | AT3G29190 | 35.407 | 418 | 254 | 7 | 48 | 455 | 89 | 500 | 7.40e-88 | 280 |
| MS.gene54263.t1 | AT2G23230 | 34.967 | 449 | 278 | 8 | 16 | 455 | 55 | 498 | 3.56e-86 | 276 |
| MS.gene54263.t1 | AT4G20230 | 34.762 | 420 | 262 | 6 | 48 | 459 | 92 | 507 | 7.57e-86 | 275 |
| MS.gene54263.t1 | AT4G20230 | 34.762 | 420 | 262 | 6 | 48 | 459 | 104 | 519 | 8.67e-86 | 275 |
| MS.gene54263.t1 | AT2G23230 | 34.744 | 449 | 274 | 9 | 16 | 455 | 55 | 493 | 1.71e-83 | 269 |
| MS.gene54263.t1 | AT4G13280 | 34.174 | 436 | 277 | 6 | 27 | 456 | 22 | 453 | 6.76e-83 | 266 |
| MS.gene54263.t1 | AT3G29110 | 34.744 | 449 | 284 | 8 | 17 | 459 | 55 | 500 | 4.21e-82 | 265 |
| MS.gene54263.t1 | AT4G16730 | 33.559 | 444 | 275 | 8 | 28 | 458 | 2 | 438 | 1.67e-81 | 262 |
| MS.gene54263.t1 | AT1G66020 | 33.185 | 449 | 291 | 6 | 17 | 459 | 56 | 501 | 9.68e-80 | 259 |
| MS.gene54263.t1 | AT4G16740 | 33.115 | 459 | 282 | 11 | 12 | 458 | 21 | 466 | 6.65e-79 | 256 |
| MS.gene54263.t1 | AT4G16730 | 34.171 | 398 | 244 | 6 | 73 | 458 | 1 | 392 | 7.58e-78 | 251 |
| MS.gene54263.t1 | AT2G24210 | 33.115 | 459 | 289 | 9 | 10 | 458 | 39 | 489 | 2.14e-77 | 253 |
| MS.gene54263.t1 | AT1G48800 | 33.038 | 451 | 286 | 9 | 17 | 457 | 63 | 507 | 2.47e-75 | 247 |
| MS.gene54263.t1 | AT1G61680 | 32.847 | 411 | 265 | 3 | 54 | 459 | 77 | 481 | 6.27e-73 | 240 |
| MS.gene54263.t1 | AT3G25830 | 31.510 | 457 | 291 | 10 | 15 | 458 | 45 | 492 | 2.49e-71 | 237 |
| MS.gene54263.t1 | AT3G25820 | 31.510 | 457 | 291 | 10 | 15 | 458 | 45 | 492 | 2.49e-71 | 237 |
| MS.gene54263.t1 | AT4G13280 | 33.028 | 436 | 252 | 8 | 27 | 456 | 22 | 423 | 2.60e-71 | 234 |
| MS.gene54263.t1 | AT4G16740 | 34.383 | 381 | 229 | 8 | 12 | 381 | 21 | 391 | 1.88e-70 | 229 |
| MS.gene54263.t1 | AT1G61680 | 32.360 | 411 | 260 | 4 | 54 | 459 | 77 | 474 | 2.38e-69 | 231 |
| MS.gene54263.t1 | AT1G48820 | 31.920 | 448 | 256 | 10 | 17 | 459 | 63 | 466 | 2.91e-69 | 230 |
| MS.gene54263.t1 | AT1G66020 | 34.688 | 369 | 232 | 6 | 17 | 379 | 56 | 421 | 1.52e-68 | 225 |
| MS.gene54263.t1 | AT3G25810 | 31.947 | 457 | 291 | 9 | 15 | 458 | 45 | 494 | 2.72e-68 | 229 |
| MS.gene54263.t1 | AT5G48110 | 40.164 | 244 | 143 | 3 | 215 | 457 | 1 | 242 | 4.11e-65 | 213 |
| MS.gene54263.t1 | AT3G25820 | 32.558 | 387 | 240 | 9 | 15 | 389 | 45 | 422 | 1.62e-63 | 212 |
| MS.gene54263.t1 | AT4G16740 | 34.756 | 328 | 194 | 7 | 14 | 330 | 23 | 341 | 1.44e-59 | 199 |
| MS.gene54263.t1 | AT4G16740 | 34.756 | 328 | 194 | 7 | 14 | 330 | 23 | 341 | 1.44e-59 | 199 |
| MS.gene54263.t1 | AT3G25820 | 33.333 | 327 | 199 | 7 | 15 | 330 | 45 | 363 | 7.67e-56 | 191 |
| MS.gene54263.t1 | AT3G25820 | 33.333 | 327 | 199 | 7 | 15 | 330 | 45 | 363 | 7.67e-56 | 191 |
| MS.gene54263.t1 | AT1G79460 | 28.278 | 389 | 228 | 15 | 70 | 422 | 274 | 647 | 4.45e-29 | 121 |
| MS.gene54263.t1 | AT1G61120 | 24.390 | 369 | 253 | 7 | 68 | 418 | 286 | 646 | 2.10e-23 | 104 |
| MS.gene54263.t1 | AT4G02780 | 28.846 | 260 | 157 | 5 | 68 | 300 | 329 | 587 | 2.95e-23 | 103 |
Find 0 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | - | 43204:25991-26010 | MS.gene54263:intergenic | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | + | 43204:23972-23991 | MS.gene54263:intron | 10.0% |
| !!! | CTTTTTTTATGTTTTTAATT+TGG | + | 43204:23602-23621 | MS.gene54263:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | + | 43204:24631-24650 | MS.gene54263:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | + | 43204:23316-23335 | MS.gene54263:CDS | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | - | 43204:24627-24646 | MS.gene54263:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | - | 43204:23151-23170 | MS.gene54263:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | + | 43204:23734-23753 | MS.gene54263:intron | 15.0% |
| !! | TTAACAACATTTAATTACAT+AGG | + | 43204:25949-25968 | MS.gene54263:intron | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | + | 43204:25485-25504 | MS.gene54263:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | - | 43204:24569-24588 | MS.gene54263:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | + | 43204:24134-24153 | MS.gene54263:intron | 15.0% |
| !!! | ATTTCATTTTAAACTTTGTA+TGG | + | 43204:25384-25403 | MS.gene54263:intron | 15.0% |
| !! | AAGAAAAATGTATCATCATT+AGG | + | 43204:25700-25719 | MS.gene54263:intron | 20.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | - | 43204:23224-23243 | MS.gene54263:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | + | 43204:23984-24003 | MS.gene54263:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | - | 43204:23910-23929 | MS.gene54263:intergenic | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+CGG | + | 43204:25624-25643 | MS.gene54263:intron | 20.0% |
| !! | TTGCAGAATTAATATTACAA+AGG | - | 43204:25866-25885 | MS.gene54263:intergenic | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | + | 43204:25125-25144 | MS.gene54263:intron | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | - | 43204:24922-24941 | MS.gene54263:intergenic | 20.0% |
| !!! | CTTTTTACTAAAAGATTTAC+AGG | - | 43204:23774-23793 | MS.gene54263:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | + | 43204:23268-23287 | MS.gene54263:intron | 20.0% |
| !!! | TATCTTGACATTTTAATTAG+TGG | + | 43204:25892-25911 | MS.gene54263:intron | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | + | 43204:25121-25140 | MS.gene54263:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | + | 43204:24634-24653 | MS.gene54263:intron | 20.0% |
| ! | AAACTTTGTATGGTTATCAA+AGG | + | 43204:25394-25413 | MS.gene54263:intron | 25.0% |
| ! | AACTTTGTATGGTTATCAAA+GGG | + | 43204:25395-25414 | MS.gene54263:intron | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | - | 43204:25371-25390 | MS.gene54263:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | - | 43204:24466-24485 | MS.gene54263:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | - | 43204:24793-24812 | MS.gene54263:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | + | 43204:24466-24485 | MS.gene54263:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | + | 43204:23464-23483 | MS.gene54263:CDS | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | + | 43204:25780-25799 | MS.gene54263:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | - | 43204:24465-24484 | MS.gene54263:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | + | 43204:23633-23652 | MS.gene54263:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | - | 43204:23569-23588 | MS.gene54263:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | + | 43204:23433-23452 | MS.gene54263:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | + | 43204:23705-23724 | MS.gene54263:intron | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | - | 43204:25546-25565 | MS.gene54263:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | + | 43204:24839-24858 | MS.gene54263:CDS | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | + | 43204:25092-25111 | MS.gene54263:intron | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | - | 43204:25271-25290 | MS.gene54263:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | - | 43204:25270-25289 | MS.gene54263:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | + | 43204:25124-25143 | MS.gene54263:intron | 25.0% |
| AAATGTGAGTAACTTGAATC+TGG | - | 43204:23127-23146 | MS.gene54262:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | - | 43204:23126-23145 | MS.gene54263:intergenic | 30.0% | |
| AATTTACCCATCTTCAATCT+TGG | + | 43204:25004-25023 | MS.gene54263:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | - | 43204:24736-24755 | MS.gene54263:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | - | 43204:23887-23906 | MS.gene54263:intergenic | 30.0% | |
| CACATATCAACAATATCAAG+TGG | + | 43204:26107-26126 | MS.gene54263:CDS | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | + | 43204:22920-22939 | MS.gene54263:CDS | 30.0% | |
| GAACAAGAAATGAAGAAAGA+AGG | + | 43204:25225-25244 | MS.gene54263:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | + | 43204:24277-24296 | MS.gene54263:CDS | 30.0% | |
| TAACTATATACCAACAACAG+AGG | + | 43204:26076-26095 | MS.gene54263:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | + | 43204:24283-24302 | MS.gene54263:CDS | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | + | 43204:24637-24656 | MS.gene54263:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | - | 43204:24751-24770 | MS.gene54263:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | + | 43204:25520-25539 | MS.gene54263:intron | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | + | 43204:23392-23411 | MS.gene54263:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | + | 43204:23704-23723 | MS.gene54263:intron | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | + | 43204:25185-25204 | MS.gene54263:CDS | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | - | 43204:24520-24539 | MS.gene54263:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | - | 43204:24752-24771 | MS.gene54263:intergenic | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | + | 43204:23193-23212 | MS.gene54263:intron | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | + | 43204:24850-24869 | MS.gene54263:CDS | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | + | 43204:23063-23082 | MS.gene54263:intron | 30.0% |
| !! | CTCTTACTTCTTTTAAGAAG+GGG | - | 43204:25269-25288 | MS.gene54263:intergenic | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | - | 43204:24026-24045 | MS.gene54263:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | - | 43204:23375-23394 | MS.gene54263:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | + | 43204:24704-24723 | MS.gene54263:CDS | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | - | 43204:23374-23393 | MS.gene54263:intergenic | 30.0% |
| !!! | TATCCACGGTTTTATTAACT+CGG | + | 43204:25638-25657 | MS.gene54263:intron | 30.0% |
| AAAGATTTACAGGCTAACAG+TGG | - | 43204:23764-23783 | MS.gene54262:intergenic | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | + | 43204:26037-26056 | MS.gene54263:CDS | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | + | 43204:26146-26165 | MS.gene54263:CDS | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | + | 43204:24175-24194 | MS.gene54263:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | + | 43204:24515-24534 | MS.gene54263:CDS | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | + | 43204:24205-24224 | MS.gene54263:CDS | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | - | 43204:25800-25819 | MS.gene54263:intergenic | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | - | 43204:23112-23131 | MS.gene54263:intergenic | 35.0% | |
| GACAAAAGACATCTTTGACT+GGG | + | 43204:26178-26197 | MS.gene54263:CDS | 35.0% | |
| GATGACACATATGATGCATA+TGG | + | 43204:24807-24826 | MS.gene54263:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | - | 43204:25174-25193 | MS.gene54263:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | + | 43204:26145-26164 | MS.gene54263:CDS | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | - | 43204:25013-25032 | MS.gene54263:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | + | 43204:25140-25159 | MS.gene54263:intron | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | + | 43204:22998-23017 | MS.gene54263:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | + | 43204:25404-25423 | MS.gene54263:intron | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | - | 43204:25014-25033 | MS.gene54263:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | - | 43204:24750-24769 | MS.gene54263:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | - | 43204:24359-24378 | MS.gene54263:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | + | 43204:24289-24308 | MS.gene54263:CDS | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | - | 43204:24514-24533 | MS.gene54263:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | + | 43204:24960-24979 | MS.gene54263:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | + | 43204:23391-23410 | MS.gene54263:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | - | 43204:26215-26234 | MS.gene54263:intergenic | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | + | 43204:24475-24494 | MS.gene54263:CDS | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | - | 43204:22930-22949 | MS.gene54263:intergenic | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | - | 43204:25532-25551 | MS.gene54263:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | - | 43204:23002-23021 | MS.gene54263:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | + | 43204:23513-23532 | MS.gene54263:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | + | 43204:24641-24660 | MS.gene54263:intron | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | - | 43204:24027-24046 | MS.gene54263:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | + | 43204:23514-23533 | MS.gene54263:CDS | 35.0% |
| !! | TTCTTTTAAGAAGGGGTCAA+GGG | - | 43204:25262-25281 | MS.gene54263:intergenic | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | + | 43204:24703-24722 | MS.gene54263:CDS | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | - | 43204:22975-22994 | MS.gene54262:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | - | 43204:22974-22993 | MS.gene54262:intergenic | 40.0% | |
| AACATTGGTCAGAGATGTTG+AGG | + | 43204:24220-24239 | MS.gene54263:CDS | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | + | 43204:24221-24240 | MS.gene54263:CDS | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | - | 43204:24267-24286 | MS.gene54263:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | - | 43204:24690-24709 | MS.gene54263:intergenic | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | - | 43204:23511-23530 | MS.gene54263:intergenic | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | - | 43204:26063-26082 | MS.gene54263:intergenic | 40.0% | |
| CGACAAAAGACATCTTTGAC+TGG | + | 43204:26177-26196 | MS.gene54263:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | + | 43204:23355-23374 | MS.gene54263:CDS | 40.0% | |
| GAACCGAGTTAATAAAACCG+TGG | - | 43204:25644-25663 | MS.gene54263:intergenic | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | + | 43204:23289-23308 | MS.gene54263:intron | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | - | 43204:24444-24463 | MS.gene54263:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | + | 43204:24256-24275 | MS.gene54263:CDS | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | + | 43204:25143-25162 | MS.gene54263:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | + | 43204:25152-25171 | MS.gene54263:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | + | 43204:26232-26251 | MS.gene54263:CDS | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | - | 43204:24349-24368 | MS.gene54263:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | + | 43204:26140-26159 | MS.gene54263:CDS | 40.0% | |
| TTTGCCGCAGTATTCATATC+AGG | - | 43204:23296-23315 | MS.gene54263:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | + | 43204:23844-23863 | MS.gene54263:intron | 40.0% |
| !! | CTTCTTTTAAGAAGGGGTCA+AGG | - | 43204:25263-25282 | MS.gene54263:intergenic | 40.0% |
| AACCAATTCAAGGACGAGCA+AGG | + | 43204:24185-24204 | MS.gene54263:CDS | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | - | 43204:26136-26155 | MS.gene54263:intergenic | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | + | 43204:22962-22981 | MS.gene54263:CDS | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | + | 43204:24745-24764 | MS.gene54263:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | + | 43204:26121-26140 | MS.gene54263:CDS | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | + | 43204:26225-26244 | MS.gene54263:CDS | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | + | 43204:24403-24422 | MS.gene54263:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | + | 43204:23548-23567 | MS.gene54263:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | + | 43204:26231-26250 | MS.gene54263:CDS | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | + | 43204:26045-26064 | MS.gene54263:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | + | 43204:24263-24282 | MS.gene54263:CDS | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | + | 43204:24508-24527 | MS.gene54263:CDS | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | - | 43204:26137-26156 | MS.gene54263:intergenic | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | - | 43204:24348-24367 | MS.gene54263:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | - | 43204:26089-26108 | MS.gene54263:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | - | 43204:26043-26062 | MS.gene54263:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | - | 43204:24190-24209 | MS.gene54263:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | - | 43204:24416-24435 | MS.gene54263:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | + | 43204:24647-24666 | MS.gene54263:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | + | 43204:23522-23541 | MS.gene54263:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | + | 43204:23530-23549 | MS.gene54263:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | + | 43204:23824-23843 | MS.gene54263:intron | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | - | 43204:24345-24364 | MS.gene54263:intergenic | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | + | 43204:22961-22980 | MS.gene54263:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | + | 43204:24396-24415 | MS.gene54263:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | + | 43204:22963-22982 | MS.gene54263:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | + | 43204:24319-24338 | MS.gene54263:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | + | 43204:24302-24321 | MS.gene54263:CDS | 50.0% |
| AATCTCCCCAAACGCTAGGG+TGG | - | 43204:22971-22990 | MS.gene54263:intergenic | 55.0% | |
| AGGACTCAATCGGGTGGCCA+TGG | - | 43204:24339-24358 | MS.gene54263:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | - | 43204:24331-24350 | MS.gene54263:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43204 | gene | 22903 | 26274 | 22903 | ID=MS.gene54263 |
| 43204 | mRNA | 22903 | 26274 | 22903 | ID=MS.gene54263.t1;Parent=MS.gene54263 |
| 43204 | exon | 22903 | 23019 | 22903 | ID=MS.gene54263.t1.exon1;Parent=MS.gene54263.t1 |
| 43204 | CDS | 22903 | 23019 | 22903 | ID=cds.MS.gene54263.t1;Parent=MS.gene54263.t1 |
| 43204 | exon | 23290 | 23569 | 23290 | ID=MS.gene54263.t1.exon2;Parent=MS.gene54263.t1 |
| 43204 | CDS | 23290 | 23569 | 23290 | ID=cds.MS.gene54263.t1;Parent=MS.gene54263.t1 |
| 43204 | exon | 24177 | 24549 | 24177 | ID=MS.gene54263.t1.exon3;Parent=MS.gene54263.t1 |
| 43204 | CDS | 24177 | 24549 | 24177 | ID=cds.MS.gene54263.t1;Parent=MS.gene54263.t1 |
| 43204 | exon | 24653 | 24871 | 24653 | ID=MS.gene54263.t1.exon4;Parent=MS.gene54263.t1 |
| 43204 | CDS | 24653 | 24871 | 24653 | ID=cds.MS.gene54263.t1;Parent=MS.gene54263.t1 |
| 43204 | exon | 25143 | 25281 | 25143 | ID=MS.gene54263.t1.exon5;Parent=MS.gene54263.t1 |
| 43204 | CDS | 25143 | 25281 | 25143 | ID=cds.MS.gene54263.t1;Parent=MS.gene54263.t1 |
| 43204 | exon | 26026 | 26274 | 26026 | ID=MS.gene54263.t1.exon6;Parent=MS.gene54263.t1 |
| 43204 | CDS | 26026 | 26274 | 26026 | ID=cds.MS.gene54263.t1;Parent=MS.gene54263.t1 |
| Gene Sequence |
| Protein sequence |
