Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54264.t1 | XP_004497487.1 | 69.8 | 556 | 168 | 0 | 1 | 556 | 1 | 556 | 3.20E-230 | 807.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54264.t1 | B9SCB6 | 49.9 | 553 | 273 | 2 | 1 | 553 | 1 | 549 | 1.9e-162 | 573.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54264.t1 | A0A1S2Y0Q7 | 69.8 | 556 | 168 | 0 | 1 | 556 | 1 | 556 | 2.3e-230 | 807.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene54264 | 0.878055 | 3.83E-69 | -1.69E-46 |
| MS.gene060119 | MS.gene54264 | 0.935066 | 1.52E-96 | -1.69E-46 |
| MS.gene060120 | MS.gene54264 | 0.943865 | 5.55E-103 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038985 | MS.gene54264 | PPI |
| MS.gene066310 | MS.gene54264 | PPI |
| MS.gene069726 | MS.gene54264 | PPI |
| MS.gene066316 | MS.gene54264 | PPI |
| MS.gene038982 | MS.gene54264 | PPI |
| MS.gene77594 | MS.gene54264 | PPI |
| MS.gene54264 | MS.gene42723 | PPI |
| MS.gene54264 | MS.gene045736 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54264.t1 | MTR_5g062230 | 68.525 | 556 | 172 | 1 | 1 | 556 | 1 | 553 | 0.0 | 803 |
| MS.gene54264.t1 | MTR_6g039440 | 67.806 | 556 | 176 | 1 | 1 | 556 | 1 | 553 | 0.0 | 799 |
| MS.gene54264.t1 | MTR_6g008560 | 66.786 | 557 | 184 | 1 | 1 | 556 | 1 | 557 | 0.0 | 796 |
| MS.gene54264.t1 | MTR_3g464190 | 66.427 | 557 | 186 | 1 | 1 | 556 | 1 | 557 | 0.0 | 781 |
| MS.gene54264.t1 | MTR_4g048460 | 66.485 | 549 | 184 | 0 | 8 | 556 | 13 | 561 | 0.0 | 769 |
| MS.gene54264.t1 | MTR_5g073200 | 66.728 | 544 | 180 | 1 | 12 | 554 | 4 | 547 | 0.0 | 752 |
| MS.gene54264.t1 | MTR_5g094620 | 63.669 | 556 | 183 | 1 | 1 | 556 | 1 | 537 | 0.0 | 745 |
| MS.gene54264.t1 | MTR_5g073260 | 65.201 | 546 | 188 | 2 | 13 | 556 | 7 | 552 | 0.0 | 744 |
| MS.gene54264.t1 | MTR_4g081460 | 57.818 | 550 | 229 | 2 | 9 | 556 | 14 | 562 | 0.0 | 672 |
| MS.gene54264.t1 | MTR_4g048460 | 65.784 | 453 | 155 | 0 | 7 | 459 | 12 | 464 | 0.0 | 623 |
| MS.gene54264.t1 | MTR_6g008560 | 66.085 | 401 | 136 | 0 | 156 | 556 | 1 | 401 | 0.0 | 575 |
| MS.gene54264.t1 | MTR_2g082010 | 43.796 | 548 | 302 | 6 | 13 | 556 | 23 | 568 | 7.99e-173 | 501 |
| MS.gene54264.t1 | MTR_2g081980 | 44.526 | 548 | 296 | 8 | 15 | 556 | 12 | 557 | 5.51e-171 | 496 |
| MS.gene54264.t1 | MTR_8g007515 | 44.364 | 550 | 298 | 6 | 13 | 556 | 9 | 556 | 7.24e-169 | 491 |
| MS.gene54264.t1 | MTR_2g082060 | 41.135 | 564 | 311 | 9 | 1 | 556 | 3 | 553 | 4.54e-157 | 460 |
| MS.gene54264.t1 | MTR_4g019550 | 40.506 | 553 | 305 | 8 | 15 | 556 | 19 | 558 | 3.66e-143 | 425 |
| MS.gene54264.t1 | MTR_2g082050 | 38.614 | 505 | 251 | 8 | 53 | 554 | 9 | 457 | 7.96e-123 | 369 |
| MS.gene54264.t1 | MTR_4g045810 | 34.615 | 546 | 346 | 4 | 13 | 554 | 41 | 579 | 1.06e-114 | 352 |
| MS.gene54264.t1 | MTR_2g064425 | 36.531 | 542 | 330 | 9 | 17 | 554 | 53 | 584 | 2.98e-105 | 328 |
| MS.gene54264.t1 | MTR_2g089130 | 34.545 | 495 | 308 | 5 | 44 | 534 | 62 | 544 | 5.93e-103 | 322 |
| MS.gene54264.t1 | MTR_2g089120 | 34.623 | 491 | 304 | 6 | 49 | 534 | 67 | 545 | 1.84e-101 | 318 |
| MS.gene54264.t1 | MTR_8g057020 | 33.212 | 548 | 355 | 7 | 10 | 554 | 48 | 587 | 1.84e-97 | 308 |
| MS.gene54264.t1 | MTR_2g064425 | 34.871 | 542 | 324 | 10 | 17 | 554 | 53 | 569 | 4.96e-95 | 301 |
| MS.gene54264.t1 | MTR_2g065450 | 32.299 | 548 | 358 | 7 | 10 | 554 | 51 | 588 | 2.14e-92 | 295 |
| MS.gene54264.t1 | MTR_4g092020 | 33.398 | 515 | 330 | 6 | 44 | 554 | 64 | 569 | 2.15e-89 | 286 |
| MS.gene54264.t1 | MTR_2g064425 | 42.975 | 363 | 195 | 7 | 17 | 376 | 53 | 406 | 6.53e-86 | 273 |
| MS.gene54264.t1 | MTR_7g057340 | 66.279 | 172 | 58 | 0 | 385 | 556 | 1 | 172 | 6.34e-84 | 258 |
| MS.gene54264.t1 | MTR_7g010710 | 30.162 | 557 | 380 | 6 | 1 | 553 | 1 | 552 | 1.14e-83 | 271 |
| MS.gene54264.t1 | MTR_4g092010 | 30.876 | 502 | 333 | 7 | 55 | 548 | 61 | 556 | 1.17e-80 | 263 |
| MS.gene54264.t1 | MTR_7g057390 | 63.953 | 172 | 59 | 1 | 385 | 556 | 1 | 169 | 2.50e-77 | 241 |
| MS.gene54264.t1 | MTR_2g064425 | 40.496 | 363 | 189 | 8 | 17 | 376 | 53 | 391 | 1.12e-75 | 246 |
| MS.gene54264.t1 | MTR_5g094530 | 56.621 | 219 | 57 | 4 | 166 | 381 | 1 | 184 | 3.55e-74 | 234 |
| MS.gene54264.t1 | MTR_2g010960 | 29.151 | 518 | 342 | 8 | 47 | 547 | 9 | 518 | 2.32e-72 | 240 |
| MS.gene54264.t1 | MTR_6g064980 | 29.697 | 495 | 335 | 8 | 54 | 539 | 13 | 503 | 1.96e-68 | 230 |
| MS.gene54264.t1 | MTR_3g465090 | 29.774 | 487 | 335 | 6 | 54 | 534 | 13 | 498 | 3.00e-68 | 229 |
| MS.gene54264.t1 | MTR_3g063170 | 29.485 | 485 | 329 | 8 | 54 | 529 | 13 | 493 | 1.83e-67 | 227 |
| MS.gene54264.t1 | MTR_3g063120 | 28.717 | 491 | 339 | 8 | 68 | 550 | 1 | 488 | 4.78e-66 | 223 |
| MS.gene54264.t1 | MTR_3g052120 | 29.563 | 504 | 344 | 9 | 54 | 550 | 13 | 512 | 2.18e-65 | 221 |
| MS.gene54264.t1 | MTR_3g063140 | 29.072 | 485 | 331 | 8 | 54 | 529 | 13 | 493 | 2.90e-64 | 219 |
| MS.gene54264.t1 | MTR_7g050990 | 60.000 | 165 | 55 | 2 | 200 | 364 | 28 | 181 | 2.59e-56 | 204 |
| MS.gene54264.t1 | MTR_6g065040 | 29.008 | 393 | 268 | 6 | 145 | 529 | 2 | 391 | 2.01e-54 | 189 |
| MS.gene54264.t1 | MTR_3g015080 | 47.674 | 172 | 52 | 2 | 385 | 556 | 1 | 134 | 1.33e-46 | 160 |
| MS.gene54264.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 70 | 554 | 65 | 569 | 5.62e-38 | 148 |
| MS.gene54264.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 70 | 554 | 269 | 773 | 1.41e-37 | 148 |
| MS.gene54264.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 70 | 554 | 256 | 760 | 1.56e-37 | 148 |
| MS.gene54264.t1 | MTR_3g058160 | 25.769 | 520 | 336 | 15 | 70 | 554 | 276 | 780 | 1.91e-37 | 148 |
| MS.gene54264.t1 | MTR_3g063160 | 31.655 | 278 | 185 | 5 | 54 | 328 | 13 | 288 | 8.02e-36 | 135 |
| MS.gene54264.t1 | MTR_2g064295 | 24.521 | 522 | 340 | 16 | 70 | 554 | 256 | 760 | 8.87e-36 | 143 |
| MS.gene54264.t1 | MTR_3g058160 | 25.139 | 541 | 334 | 16 | 70 | 554 | 276 | 801 | 7.70e-35 | 140 |
| MS.gene54264.t1 | MTR_2g012870 | 23.944 | 568 | 381 | 19 | 10 | 543 | 194 | 744 | 7.11e-31 | 128 |
| MS.gene54264.t1 | MTR_2g012900 | 24.131 | 518 | 340 | 18 | 10 | 486 | 194 | 699 | 1.44e-29 | 124 |
| MS.gene54264.t1 | MTR_7g011663 | 29.927 | 274 | 160 | 6 | 68 | 310 | 344 | 616 | 5.15e-24 | 107 |
| MS.gene54264.t1 | MTR_7g094970 | 27.273 | 275 | 168 | 6 | 68 | 313 | 206 | 477 | 7.90e-24 | 106 |
| MS.gene54264.t1 | MTR_7g011770 | 28.669 | 293 | 180 | 7 | 68 | 332 | 240 | 531 | 3.67e-21 | 98.2 |
| MS.gene54264.t1 | MTR_5g030050 | 28.409 | 264 | 156 | 7 | 73 | 312 | 3 | 257 | 3.79e-21 | 94.7 |
| MS.gene54264.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 153 | 257 | 2 | 111 | 2.36e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54264.t1 | AT5G23960 | 39.383 | 551 | 319 | 7 | 13 | 556 | 3 | 545 | 1.77e-144 | 428 |
| MS.gene54264.t1 | AT5G23960 | 39.350 | 554 | 317 | 9 | 13 | 556 | 3 | 547 | 2.56e-143 | 425 |
| MS.gene54264.t1 | AT1G70080 | 36.804 | 557 | 342 | 7 | 8 | 556 | 57 | 611 | 2.20e-130 | 394 |
| MS.gene54264.t1 | AT3G14490 | 37.546 | 546 | 331 | 5 | 17 | 556 | 60 | 601 | 3.35e-127 | 385 |
| MS.gene54264.t1 | AT3G14520 | 36.229 | 541 | 335 | 5 | 22 | 556 | 68 | 604 | 8.56e-125 | 379 |
| MS.gene54264.t1 | AT1G31950 | 35.949 | 548 | 328 | 6 | 22 | 556 | 70 | 607 | 1.35e-123 | 376 |
| MS.gene54264.t1 | AT1G31950 | 36.414 | 541 | 334 | 5 | 22 | 556 | 70 | 606 | 2.22e-123 | 375 |
| MS.gene54264.t1 | AT3G14540 | 36.481 | 540 | 335 | 4 | 22 | 556 | 65 | 601 | 2.56e-122 | 373 |
| MS.gene54264.t1 | AT3G29410 | 35.283 | 547 | 340 | 5 | 17 | 556 | 64 | 603 | 4.36e-118 | 362 |
| MS.gene54264.t1 | AT5G44630 | 35.584 | 548 | 336 | 8 | 18 | 554 | 14 | 555 | 3.61e-116 | 355 |
| MS.gene54264.t1 | AT3G32030 | 33.393 | 560 | 359 | 7 | 2 | 556 | 54 | 604 | 3.37e-115 | 354 |
| MS.gene54264.t1 | AT1G33750 | 34.206 | 535 | 346 | 4 | 24 | 556 | 73 | 603 | 4.73e-114 | 352 |
| MS.gene54264.t1 | AT4G20210 | 33.942 | 548 | 349 | 7 | 17 | 556 | 58 | 600 | 1.63e-113 | 350 |
| MS.gene54264.t1 | AT3G29410 | 35.600 | 500 | 318 | 3 | 59 | 556 | 1 | 498 | 3.12e-112 | 343 |
| MS.gene54264.t1 | AT4G20200 | 35.521 | 518 | 320 | 8 | 48 | 556 | 92 | 604 | 3.28e-112 | 347 |
| MS.gene54264.t1 | AT4G13300 | 34.694 | 539 | 341 | 7 | 25 | 556 | 20 | 554 | 1.03e-111 | 344 |
| MS.gene54264.t1 | AT4G13280 | 34.078 | 537 | 343 | 7 | 27 | 556 | 22 | 554 | 2.47e-106 | 330 |
| MS.gene54264.t1 | AT4G15870 | 34.381 | 541 | 329 | 10 | 25 | 556 | 75 | 598 | 3.64e-106 | 331 |
| MS.gene54264.t1 | AT1G31950 | 36.933 | 463 | 269 | 6 | 22 | 471 | 70 | 522 | 2.65e-105 | 327 |
| MS.gene54264.t1 | AT3G29190 | 33.333 | 519 | 330 | 7 | 48 | 556 | 89 | 601 | 3.21e-105 | 328 |
| MS.gene54264.t1 | AT3G14540 | 37.892 | 446 | 270 | 3 | 22 | 463 | 65 | 507 | 7.18e-105 | 325 |
| MS.gene54264.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 48 | 552 | 92 | 601 | 1.11e-102 | 322 |
| MS.gene54264.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 48 | 552 | 104 | 613 | 1.27e-102 | 322 |
| MS.gene54264.t1 | AT2G23230 | 34.432 | 546 | 343 | 9 | 16 | 551 | 55 | 595 | 4.28e-102 | 321 |
| MS.gene54264.t1 | AT3G29110 | 34.191 | 544 | 349 | 8 | 17 | 554 | 55 | 595 | 7.63e-101 | 317 |
| MS.gene54264.t1 | AT2G23230 | 34.249 | 546 | 339 | 10 | 16 | 551 | 55 | 590 | 1.51e-99 | 314 |
| MS.gene54264.t1 | AT1G66020 | 32.418 | 546 | 360 | 6 | 17 | 556 | 56 | 598 | 4.89e-98 | 310 |
| MS.gene54264.t1 | AT1G48800 | 32.418 | 546 | 353 | 9 | 17 | 552 | 63 | 602 | 5.02e-96 | 305 |
| MS.gene54264.t1 | AT4G16730 | 32.228 | 543 | 345 | 10 | 28 | 554 | 2 | 537 | 6.21e-95 | 300 |
| MS.gene54264.t1 | AT4G13280 | 33.147 | 537 | 318 | 9 | 27 | 556 | 22 | 524 | 1.23e-94 | 299 |
| MS.gene54264.t1 | AT4G16730 | 32.465 | 499 | 316 | 8 | 73 | 556 | 1 | 493 | 2.10e-91 | 289 |
| MS.gene54264.t1 | AT4G16740 | 32.014 | 556 | 351 | 13 | 14 | 556 | 23 | 564 | 6.99e-89 | 285 |
| MS.gene54264.t1 | AT1G61680 | 32.596 | 497 | 323 | 4 | 54 | 544 | 77 | 567 | 1.59e-88 | 284 |
| MS.gene54264.t1 | AT2G24210 | 31.607 | 560 | 362 | 11 | 10 | 556 | 39 | 590 | 2.61e-88 | 284 |
| MS.gene54264.t1 | AT1G61680 | 32.193 | 497 | 318 | 5 | 54 | 544 | 77 | 560 | 4.06e-85 | 275 |
| MS.gene54264.t1 | AT5G48110 | 37.026 | 343 | 211 | 5 | 215 | 556 | 1 | 339 | 6.72e-84 | 265 |
| MS.gene54264.t1 | AT1G48820 | 31.169 | 539 | 321 | 11 | 17 | 549 | 63 | 557 | 1.71e-83 | 271 |
| MS.gene54264.t1 | AT3G25830 | 30.536 | 560 | 361 | 13 | 15 | 556 | 45 | 594 | 3.39e-81 | 266 |
| MS.gene54264.t1 | AT3G25820 | 30.536 | 560 | 361 | 13 | 15 | 556 | 45 | 594 | 3.39e-81 | 266 |
| MS.gene54264.t1 | AT3G25810 | 30.714 | 560 | 363 | 11 | 15 | 556 | 45 | 597 | 7.99e-80 | 262 |
| MS.gene54264.t1 | AT4G16740 | 34.565 | 379 | 227 | 8 | 14 | 381 | 23 | 391 | 3.76e-69 | 228 |
| MS.gene54264.t1 | AT1G66020 | 34.688 | 369 | 232 | 6 | 17 | 379 | 56 | 421 | 1.63e-67 | 225 |
| MS.gene54264.t1 | AT3G25820 | 32.558 | 387 | 240 | 9 | 15 | 389 | 45 | 422 | 2.18e-62 | 212 |
| MS.gene54264.t1 | AT4G16740 | 34.756 | 328 | 194 | 7 | 14 | 330 | 23 | 341 | 1.06e-58 | 200 |
| MS.gene54264.t1 | AT4G16740 | 34.756 | 328 | 194 | 7 | 14 | 330 | 23 | 341 | 1.06e-58 | 200 |
| MS.gene54264.t1 | AT3G25820 | 33.333 | 327 | 199 | 7 | 15 | 330 | 45 | 363 | 1.04e-54 | 190 |
| MS.gene54264.t1 | AT3G25820 | 33.333 | 327 | 199 | 7 | 15 | 330 | 45 | 363 | 1.04e-54 | 190 |
| MS.gene54264.t1 | AT1G79460 | 25.095 | 526 | 335 | 20 | 70 | 556 | 274 | 779 | 4.26e-32 | 132 |
| MS.gene54264.t1 | AT1G61120 | 23.379 | 509 | 360 | 10 | 68 | 556 | 286 | 784 | 2.36e-27 | 117 |
| MS.gene54264.t1 | AT4G02780 | 29.119 | 261 | 155 | 6 | 68 | 300 | 329 | 587 | 1.00e-22 | 103 |
Find 0 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | - | 43201:9623-9642 | MS.gene54264:intergenic | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | + | 43201:7604-7623 | MS.gene54264:intron | 10.0% |
| !!! | CTTTTTTTATGTTTTTAATT+TGG | + | 43201:7234-7253 | MS.gene54264:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | + | 43201:8263-8282 | MS.gene54264:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | + | 43201:6948-6967 | MS.gene54264:CDS | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | - | 43201:8259-8278 | MS.gene54264:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | - | 43201:6783-6802 | MS.gene54264:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | + | 43201:7366-7385 | MS.gene54264:intron | 15.0% |
| !! | TTAACAACATTTAATTACAT+AGG | + | 43201:9581-9600 | MS.gene54264:intron | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | + | 43201:9117-9136 | MS.gene54264:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | - | 43201:8201-8220 | MS.gene54264:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | + | 43201:7766-7785 | MS.gene54264:intron | 15.0% |
| !!! | ATTTCATTTTAAACTTTGTA+TGG | + | 43201:9016-9035 | MS.gene54264:intron | 15.0% |
| !! | AAGAAAAATGTATCATCATT+AGG | + | 43201:9332-9351 | MS.gene54264:intron | 20.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | - | 43201:6856-6875 | MS.gene54264:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | + | 43201:7616-7635 | MS.gene54264:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | - | 43201:7542-7561 | MS.gene54264:intergenic | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+CGG | + | 43201:9256-9275 | MS.gene54264:intron | 20.0% |
| !! | TTGCAGAATTAATATTACAA+AGG | - | 43201:9498-9517 | MS.gene54264:intergenic | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | + | 43201:8757-8776 | MS.gene54264:intron | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | - | 43201:8554-8573 | MS.gene54264:intergenic | 20.0% |
| !!! | CTTTTTACTAAAAGATTTAC+AGG | - | 43201:7406-7425 | MS.gene54264:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | + | 43201:6900-6919 | MS.gene54264:intron | 20.0% |
| !!! | TATCTTGACATTTTAATTAG+TGG | + | 43201:9524-9543 | MS.gene54264:intron | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | + | 43201:8753-8772 | MS.gene54264:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | + | 43201:8266-8285 | MS.gene54264:intron | 20.0% |
| ! | AAACTTTGTATGGTTATCAA+AGG | + | 43201:9026-9045 | MS.gene54264:intron | 25.0% |
| ! | AACTTTGTATGGTTATCAAA+GGG | + | 43201:9027-9046 | MS.gene54264:intron | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | - | 43201:9003-9022 | MS.gene54264:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | - | 43201:8098-8117 | MS.gene54264:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | - | 43201:8425-8444 | MS.gene54264:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | + | 43201:8098-8117 | MS.gene54264:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | + | 43201:7096-7115 | MS.gene54264:CDS | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | + | 43201:9412-9431 | MS.gene54264:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | - | 43201:8097-8116 | MS.gene54264:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | + | 43201:7265-7284 | MS.gene54264:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | - | 43201:7201-7220 | MS.gene54264:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | + | 43201:7065-7084 | MS.gene54264:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | + | 43201:7337-7356 | MS.gene54264:intron | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | - | 43201:9178-9197 | MS.gene54264:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | + | 43201:8471-8490 | MS.gene54264:CDS | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | + | 43201:8724-8743 | MS.gene54264:intron | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | - | 43201:8903-8922 | MS.gene54264:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | - | 43201:8902-8921 | MS.gene54264:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | + | 43201:8756-8775 | MS.gene54264:intron | 25.0% |
| AAAAGAAAATTGACAACGCT+TGG | + | 43201:10110-10129 | MS.gene54264:CDS | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | - | 43201:6759-6778 | MS.gene54264:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | - | 43201:6758-6777 | MS.gene54264:intergenic | 30.0% | |
| AATTTACCCATCTTCAATCT+TGG | + | 43201:8636-8655 | MS.gene54264:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | - | 43201:8368-8387 | MS.gene54264:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | - | 43201:7519-7538 | MS.gene54264:intergenic | 30.0% | |
| CACATATCAACAATATCAAG+TGG | + | 43201:9739-9758 | MS.gene54264:CDS | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | + | 43201:6552-6571 | MS.gene54264:CDS | 30.0% | |
| GAACAAGAAATGAAGAAAGA+AGG | + | 43201:8857-8876 | MS.gene54264:CDS | 30.0% | |
| GAGGGAATATGATTTGAATA+GGG | + | 43201:10066-10085 | MS.gene54264:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | + | 43201:7909-7928 | MS.gene54264:CDS | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | + | 43201:10048-10067 | MS.gene54264:CDS | 30.0% | |
| TAACTATATACCAACAACAG+AGG | + | 43201:9708-9727 | MS.gene54264:CDS | 30.0% | |
| TGAGGGAATATGATTTGAAT+AGG | + | 43201:10065-10084 | MS.gene54264:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | + | 43201:7915-7934 | MS.gene54264:CDS | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | + | 43201:8269-8288 | MS.gene54264:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | - | 43201:8383-8402 | MS.gene54264:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | + | 43201:9152-9171 | MS.gene54264:intron | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | + | 43201:7024-7043 | MS.gene54264:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | + | 43201:7336-7355 | MS.gene54264:intron | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | + | 43201:8817-8836 | MS.gene54264:CDS | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | - | 43201:8152-8171 | MS.gene54264:intergenic | 30.0% |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | - | 43201:10098-10117 | MS.gene54264:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | - | 43201:8384-8403 | MS.gene54264:intergenic | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | + | 43201:6825-6844 | MS.gene54264:intron | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | + | 43201:8482-8501 | MS.gene54264:CDS | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | - | 43201:10111-10130 | MS.gene54264:intergenic | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | + | 43201:6695-6714 | MS.gene54264:intron | 30.0% |
| !! | CTCTTACTTCTTTTAAGAAG+GGG | - | 43201:8901-8920 | MS.gene54264:intergenic | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | - | 43201:7658-7677 | MS.gene54264:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | - | 43201:7007-7026 | MS.gene54264:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | + | 43201:8336-8355 | MS.gene54264:CDS | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | - | 43201:7006-7025 | MS.gene54264:intergenic | 30.0% |
| !!! | TATCCACGGTTTTATTAACT+CGG | + | 43201:9270-9289 | MS.gene54264:intron | 30.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | + | 43201:10013-10032 | MS.gene54264:intron | 35.0% | |
| AAAGATTTACAGGCTAACAG+TGG | - | 43201:7396-7415 | MS.gene54264:intergenic | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | + | 43201:9669-9688 | MS.gene54264:CDS | 35.0% | |
| ACACACGTAAGAATAGGTAA+TGG | - | 43201:10175-10194 | MS.gene54264:intergenic | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | + | 43201:9778-9797 | MS.gene54264:CDS | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | + | 43201:7807-7826 | MS.gene54264:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | + | 43201:8147-8166 | MS.gene54264:CDS | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | + | 43201:7837-7856 | MS.gene54264:CDS | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | + | 43201:10126-10145 | MS.gene54264:CDS | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | + | 43201:10047-10066 | MS.gene54264:CDS | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | - | 43201:9432-9451 | MS.gene54264:intergenic | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | - | 43201:6744-6763 | MS.gene54264:intergenic | 35.0% | |
| GACAAAAGACATCTTTGACT+GGG | + | 43201:9810-9829 | MS.gene54264:CDS | 35.0% | |
| GATGACACATATGATGCATA+TGG | + | 43201:8439-8458 | MS.gene54264:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | - | 43201:8806-8825 | MS.gene54264:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | + | 43201:9777-9796 | MS.gene54264:CDS | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | - | 43201:8645-8664 | MS.gene54264:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | + | 43201:8772-8791 | MS.gene54264:intron | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | + | 43201:6630-6649 | MS.gene54264:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | + | 43201:9036-9055 | MS.gene54264:intron | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | - | 43201:8646-8665 | MS.gene54264:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | - | 43201:8382-8401 | MS.gene54264:intergenic | 35.0% | |
| TTGAGAACACACGTAAGAAT+AGG | - | 43201:10181-10200 | MS.gene54264:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | - | 43201:7991-8010 | MS.gene54264:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | + | 43201:7921-7940 | MS.gene54264:CDS | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | - | 43201:8146-8165 | MS.gene54264:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | + | 43201:8592-8611 | MS.gene54264:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | + | 43201:7023-7042 | MS.gene54264:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | - | 43201:9847-9866 | MS.gene54264:intergenic | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | + | 43201:8107-8126 | MS.gene54264:CDS | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | - | 43201:6562-6581 | MS.gene54264:intergenic | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | - | 43201:9164-9183 | MS.gene54264:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | - | 43201:6634-6653 | MS.gene54264:intergenic | 35.0% |
| !! | ATAGGTAATGGAACTTCAGT+TGG | - | 43201:10163-10182 | MS.gene54264:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | + | 43201:7145-7164 | MS.gene54264:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | + | 43201:8273-8292 | MS.gene54264:intron | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | - | 43201:7659-7678 | MS.gene54264:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | + | 43201:7146-7165 | MS.gene54264:CDS | 35.0% |
| !! | TTCTTTTAAGAAGGGGTCAA+GGG | - | 43201:8894-8913 | MS.gene54264:intergenic | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | + | 43201:8335-8354 | MS.gene54264:CDS | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | - | 43201:6607-6626 | MS.gene54263:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | - | 43201:6606-6625 | MS.gene54263:intergenic | 40.0% | |
| AACATTGGTCAGAGATGTTG+AGG | + | 43201:7852-7871 | MS.gene54264:CDS | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | + | 43201:7853-7872 | MS.gene54264:CDS | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | - | 43201:7899-7918 | MS.gene54264:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | - | 43201:8322-8341 | MS.gene54264:intergenic | 40.0% | |
| AGGACATGTTTCTTCGTACT+TGG | + | 43201:10033-10052 | MS.gene54264:CDS | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | - | 43201:7143-7162 | MS.gene54264:intergenic | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | - | 43201:9695-9714 | MS.gene54264:intergenic | 40.0% | |
| CGACAAAAGACATCTTTGAC+TGG | + | 43201:9809-9828 | MS.gene54264:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | + | 43201:6987-7006 | MS.gene54264:CDS | 40.0% | |
| GAACCGAGTTAATAAAACCG+TGG | - | 43201:9276-9295 | MS.gene54264:intergenic | 40.0% | |
| GATAACTACACACACTCTGA+CGG | + | 43201:10238-10257 | MS.gene54264:CDS | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | + | 43201:6921-6940 | MS.gene54264:intron | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | - | 43201:8076-8095 | MS.gene54264:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | + | 43201:7888-7907 | MS.gene54264:CDS | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | + | 43201:8775-8794 | MS.gene54264:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | + | 43201:8784-8803 | MS.gene54264:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | + | 43201:9864-9883 | MS.gene54264:CDS | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | - | 43201:7981-8000 | MS.gene54264:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | + | 43201:9772-9791 | MS.gene54264:CDS | 40.0% | |
| TTTGCCGCAGTATTCATATC+AGG | - | 43201:6928-6947 | MS.gene54264:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | + | 43201:7476-7495 | MS.gene54264:intron | 40.0% |
| !! | CAATCTCTCGCGTTTTATTG+AGG | + | 43201:10198-10217 | MS.gene54264:CDS | 40.0% |
| !! | CTTCTTTTAAGAAGGGGTCA+AGG | - | 43201:8895-8914 | MS.gene54264:intergenic | 40.0% |
| AACCAATTCAAGGACGAGCA+AGG | + | 43201:7817-7836 | MS.gene54264:CDS | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | - | 43201:9768-9787 | MS.gene54264:intergenic | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | + | 43201:6594-6613 | MS.gene54264:CDS | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | + | 43201:8377-8396 | MS.gene54264:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | + | 43201:9753-9772 | MS.gene54264:CDS | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | + | 43201:9857-9876 | MS.gene54264:CDS | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | + | 43201:8035-8054 | MS.gene54264:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | + | 43201:7180-7199 | MS.gene54264:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | + | 43201:9863-9882 | MS.gene54264:CDS | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | + | 43201:9677-9696 | MS.gene54264:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | + | 43201:7895-7914 | MS.gene54264:CDS | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | + | 43201:8140-8159 | MS.gene54264:CDS | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | + | 43201:9885-9904 | MS.gene54264:CDS | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | - | 43201:9769-9788 | MS.gene54264:intergenic | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | - | 43201:7980-7999 | MS.gene54264:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | - | 43201:9721-9740 | MS.gene54264:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | - | 43201:9675-9694 | MS.gene54264:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | - | 43201:7822-7841 | MS.gene54264:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | - | 43201:8048-8067 | MS.gene54264:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | + | 43201:8279-8298 | MS.gene54264:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | + | 43201:7154-7173 | MS.gene54264:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | + | 43201:7162-7181 | MS.gene54264:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | + | 43201:7456-7475 | MS.gene54264:intron | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | - | 43201:7977-7996 | MS.gene54264:intergenic | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | + | 43201:6593-6612 | MS.gene54264:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | + | 43201:8028-8047 | MS.gene54264:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | + | 43201:6595-6614 | MS.gene54264:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | + | 43201:7951-7970 | MS.gene54264:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | + | 43201:7934-7953 | MS.gene54264:CDS | 50.0% |
| AATCTCCCCAAACGCTAGGG+TGG | - | 43201:6603-6622 | MS.gene54264:intergenic | 55.0% | |
| AGGACTCAATCGGGTGGCCA+TGG | - | 43201:7971-7990 | MS.gene54264:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | - | 43201:7963-7982 | MS.gene54264:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43201 | gene | 6535 | 10312 | 6535 | ID=MS.gene54264 |
| 43201 | mRNA | 6535 | 10312 | 6535 | ID=MS.gene54264.t1;Parent=MS.gene54264 |
| 43201 | exon | 6535 | 6651 | 6535 | ID=MS.gene54264.t1.exon1;Parent=MS.gene54264.t1 |
| 43201 | CDS | 6535 | 6651 | 6535 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| 43201 | exon | 6922 | 7201 | 6922 | ID=MS.gene54264.t1.exon2;Parent=MS.gene54264.t1 |
| 43201 | CDS | 6922 | 7201 | 6922 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| 43201 | exon | 7809 | 8181 | 7809 | ID=MS.gene54264.t1.exon3;Parent=MS.gene54264.t1 |
| 43201 | CDS | 7809 | 8181 | 7809 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| 43201 | exon | 8285 | 8503 | 8285 | ID=MS.gene54264.t1.exon4;Parent=MS.gene54264.t1 |
| 43201 | CDS | 8285 | 8503 | 8285 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| 43201 | exon | 8775 | 8913 | 8775 | ID=MS.gene54264.t1.exon5;Parent=MS.gene54264.t1 |
| 43201 | CDS | 8775 | 8913 | 8775 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| 43201 | exon | 9658 | 9906 | 9658 | ID=MS.gene54264.t1.exon6;Parent=MS.gene54264.t1 |
| 43201 | CDS | 9658 | 9906 | 9658 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| 43201 | exon | 10019 | 10312 | 10019 | ID=MS.gene54264.t1.exon7;Parent=MS.gene54264.t1 |
| 43201 | CDS | 10019 | 10312 | 10019 | ID=cds.MS.gene54264.t1;Parent=MS.gene54264.t1 |
| Gene Sequence |
| Protein sequence |
