Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54268.t1 | XP_004497487.1 | 69.8 | 553 | 167 | 0 | 1 | 553 | 1 | 553 | 1.60E-229 | 805.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54268.t1 | B9SCB6 | 49.9 | 553 | 273 | 2 | 1 | 553 | 1 | 549 | 1.9e-162 | 573.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54268.t1 | A0A1S2Y0Q7 | 69.8 | 553 | 167 | 0 | 1 | 553 | 1 | 553 | 1.2e-229 | 805.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene54268 | 0.859028 | 5.49E-63 | -1.69E-46 |
| MS.gene060119 | MS.gene54268 | 0.935146 | 1.34E-96 | -1.69E-46 |
| MS.gene060120 | MS.gene54268 | 0.937085 | 6.13E-98 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54268 | MS.gene77594 | PPI |
| MS.gene066316 | MS.gene54268 | PPI |
| MS.gene038985 | MS.gene54268 | PPI |
| MS.gene54268 | MS.gene045736 | PPI |
| MS.gene54268 | MS.gene42723 | PPI |
| MS.gene54268 | MS.gene069726 | PPI |
| MS.gene066310 | MS.gene54268 | PPI |
| MS.gene54268 | MS.gene038982 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54268.t1 | MTR_5g062230 | 68.784 | 551 | 169 | 1 | 1 | 551 | 1 | 548 | 0.0 | 800 |
| MS.gene54268.t1 | MTR_6g039440 | 67.993 | 553 | 174 | 1 | 1 | 553 | 1 | 550 | 0.0 | 796 |
| MS.gene54268.t1 | MTR_6g008560 | 66.787 | 554 | 183 | 1 | 1 | 553 | 1 | 554 | 0.0 | 793 |
| MS.gene54268.t1 | MTR_3g464190 | 66.426 | 554 | 185 | 1 | 1 | 553 | 1 | 554 | 0.0 | 779 |
| MS.gene54268.t1 | MTR_4g048460 | 66.484 | 546 | 183 | 0 | 8 | 553 | 13 | 558 | 0.0 | 767 |
| MS.gene54268.t1 | MTR_5g073200 | 66.667 | 543 | 180 | 1 | 12 | 553 | 4 | 546 | 0.0 | 750 |
| MS.gene54268.t1 | MTR_5g094620 | 63.653 | 553 | 182 | 1 | 1 | 553 | 1 | 534 | 0.0 | 742 |
| MS.gene54268.t1 | MTR_5g073260 | 65.378 | 543 | 186 | 2 | 13 | 553 | 7 | 549 | 0.0 | 742 |
| MS.gene54268.t1 | MTR_4g081460 | 58.135 | 547 | 226 | 2 | 9 | 553 | 14 | 559 | 0.0 | 671 |
| MS.gene54268.t1 | MTR_4g048460 | 65.929 | 452 | 154 | 0 | 8 | 459 | 13 | 464 | 0.0 | 623 |
| MS.gene54268.t1 | MTR_6g008560 | 66.080 | 398 | 135 | 0 | 156 | 553 | 1 | 398 | 0.0 | 573 |
| MS.gene54268.t1 | MTR_2g082010 | 43.853 | 545 | 300 | 6 | 13 | 553 | 23 | 565 | 6.75e-172 | 499 |
| MS.gene54268.t1 | MTR_2g081980 | 44.587 | 545 | 294 | 8 | 15 | 553 | 12 | 554 | 3.01e-170 | 494 |
| MS.gene54268.t1 | MTR_8g007515 | 44.424 | 547 | 296 | 6 | 13 | 553 | 9 | 553 | 9.97e-168 | 488 |
| MS.gene54268.t1 | MTR_2g082060 | 41.176 | 561 | 309 | 9 | 1 | 553 | 3 | 550 | 7.42e-156 | 457 |
| MS.gene54268.t1 | MTR_4g019550 | 40.545 | 550 | 303 | 8 | 15 | 553 | 19 | 555 | 3.91e-142 | 422 |
| MS.gene54268.t1 | MTR_2g082050 | 38.690 | 504 | 250 | 8 | 53 | 553 | 9 | 456 | 2.73e-122 | 368 |
| MS.gene54268.t1 | MTR_4g045810 | 34.679 | 545 | 345 | 4 | 13 | 553 | 41 | 578 | 2.24e-114 | 351 |
| MS.gene54268.t1 | MTR_2g064425 | 36.599 | 541 | 329 | 9 | 17 | 553 | 53 | 583 | 1.04e-104 | 327 |
| MS.gene54268.t1 | MTR_2g089130 | 34.545 | 495 | 308 | 5 | 44 | 534 | 62 | 544 | 5.79e-103 | 322 |
| MS.gene54268.t1 | MTR_2g089120 | 34.623 | 491 | 304 | 6 | 49 | 534 | 67 | 545 | 2.37e-101 | 317 |
| MS.gene54268.t1 | MTR_8g057020 | 33.272 | 547 | 354 | 7 | 10 | 553 | 48 | 586 | 6.80e-97 | 306 |
| MS.gene54268.t1 | MTR_2g064425 | 34.935 | 541 | 323 | 10 | 17 | 553 | 53 | 568 | 1.39e-94 | 300 |
| MS.gene54268.t1 | MTR_2g065450 | 32.358 | 547 | 357 | 7 | 10 | 553 | 51 | 587 | 5.34e-92 | 293 |
| MS.gene54268.t1 | MTR_4g092020 | 33.464 | 511 | 327 | 6 | 44 | 550 | 64 | 565 | 5.02e-89 | 285 |
| MS.gene54268.t1 | MTR_2g064425 | 42.975 | 363 | 195 | 7 | 17 | 376 | 53 | 406 | 5.30e-86 | 273 |
| MS.gene54268.t1 | MTR_7g010710 | 30.162 | 557 | 380 | 6 | 1 | 553 | 1 | 552 | 1.26e-83 | 271 |
| MS.gene54268.t1 | MTR_7g057340 | 66.272 | 169 | 57 | 0 | 385 | 553 | 1 | 169 | 7.32e-83 | 256 |
| MS.gene54268.t1 | MTR_4g092010 | 30.876 | 502 | 333 | 7 | 55 | 548 | 61 | 556 | 1.04e-80 | 263 |
| MS.gene54268.t1 | MTR_7g057390 | 63.905 | 169 | 58 | 1 | 385 | 553 | 1 | 166 | 3.31e-76 | 238 |
| MS.gene54268.t1 | MTR_2g064425 | 40.496 | 363 | 189 | 8 | 17 | 376 | 53 | 391 | 7.15e-76 | 246 |
| MS.gene54268.t1 | MTR_5g094530 | 56.621 | 219 | 57 | 4 | 166 | 381 | 1 | 184 | 3.92e-74 | 234 |
| MS.gene54268.t1 | MTR_2g010960 | 29.151 | 518 | 342 | 8 | 47 | 547 | 9 | 518 | 2.55e-72 | 240 |
| MS.gene54268.t1 | MTR_6g064980 | 29.697 | 495 | 335 | 8 | 54 | 539 | 13 | 503 | 1.75e-68 | 230 |
| MS.gene54268.t1 | MTR_3g465090 | 29.774 | 487 | 335 | 6 | 54 | 534 | 13 | 498 | 3.17e-68 | 229 |
| MS.gene54268.t1 | MTR_3g063170 | 29.485 | 485 | 329 | 8 | 54 | 529 | 13 | 493 | 1.91e-67 | 227 |
| MS.gene54268.t1 | MTR_3g063120 | 28.717 | 491 | 339 | 8 | 68 | 550 | 1 | 488 | 4.02e-66 | 223 |
| MS.gene54268.t1 | MTR_3g052120 | 29.563 | 504 | 344 | 9 | 54 | 550 | 13 | 512 | 2.48e-65 | 221 |
| MS.gene54268.t1 | MTR_3g063140 | 29.072 | 485 | 331 | 8 | 54 | 529 | 13 | 493 | 2.15e-64 | 219 |
| MS.gene54268.t1 | MTR_7g050990 | 60.000 | 165 | 55 | 2 | 200 | 364 | 28 | 181 | 2.38e-56 | 204 |
| MS.gene54268.t1 | MTR_6g065040 | 29.008 | 393 | 268 | 6 | 145 | 529 | 2 | 391 | 1.76e-54 | 189 |
| MS.gene54268.t1 | MTR_3g015080 | 47.619 | 168 | 50 | 2 | 385 | 552 | 1 | 130 | 1.10e-45 | 157 |
| MS.gene54268.t1 | MTR_3g058160 | 25.819 | 519 | 335 | 15 | 70 | 553 | 65 | 568 | 1.32e-37 | 147 |
| MS.gene54268.t1 | MTR_3g058160 | 25.819 | 519 | 335 | 15 | 70 | 553 | 256 | 759 | 2.91e-37 | 147 |
| MS.gene54268.t1 | MTR_3g058160 | 25.819 | 519 | 335 | 15 | 70 | 553 | 276 | 779 | 3.00e-37 | 147 |
| MS.gene54268.t1 | MTR_3g058160 | 25.819 | 519 | 335 | 15 | 70 | 553 | 269 | 772 | 3.71e-37 | 147 |
| MS.gene54268.t1 | MTR_3g063160 | 31.655 | 278 | 185 | 5 | 54 | 328 | 13 | 288 | 8.33e-36 | 135 |
| MS.gene54268.t1 | MTR_2g064295 | 24.568 | 521 | 339 | 16 | 70 | 553 | 256 | 759 | 1.66e-35 | 142 |
| MS.gene54268.t1 | MTR_3g058160 | 25.185 | 540 | 333 | 16 | 70 | 553 | 276 | 800 | 1.57e-34 | 139 |
| MS.gene54268.t1 | MTR_2g012870 | 23.944 | 568 | 381 | 19 | 10 | 543 | 194 | 744 | 5.53e-31 | 128 |
| MS.gene54268.t1 | MTR_2g012900 | 24.131 | 518 | 340 | 18 | 10 | 486 | 194 | 699 | 1.18e-29 | 124 |
| MS.gene54268.t1 | MTR_7g011663 | 29.927 | 274 | 160 | 6 | 68 | 310 | 344 | 616 | 5.31e-24 | 107 |
| MS.gene54268.t1 | MTR_7g094970 | 27.273 | 275 | 168 | 6 | 68 | 313 | 206 | 477 | 8.54e-24 | 106 |
| MS.gene54268.t1 | MTR_5g030050 | 28.409 | 264 | 156 | 7 | 73 | 312 | 3 | 257 | 3.51e-21 | 94.7 |
| MS.gene54268.t1 | MTR_7g011770 | 28.669 | 293 | 180 | 7 | 68 | 332 | 240 | 531 | 4.46e-21 | 97.8 |
| MS.gene54268.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 153 | 257 | 2 | 111 | 2.22e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54268.t1 | AT5G23960 | 39.560 | 546 | 315 | 7 | 13 | 551 | 3 | 540 | 1.56e-143 | 425 |
| MS.gene54268.t1 | AT5G23960 | 39.526 | 549 | 313 | 9 | 13 | 551 | 3 | 542 | 1.33e-142 | 423 |
| MS.gene54268.t1 | AT1G70080 | 37.071 | 553 | 338 | 7 | 8 | 552 | 57 | 607 | 2.72e-130 | 394 |
| MS.gene54268.t1 | AT3G14490 | 37.753 | 543 | 328 | 5 | 17 | 553 | 60 | 598 | 9.74e-127 | 384 |
| MS.gene54268.t1 | AT3G14520 | 36.431 | 538 | 332 | 5 | 22 | 553 | 68 | 601 | 2.41e-124 | 378 |
| MS.gene54268.t1 | AT1G31950 | 36.147 | 545 | 325 | 6 | 22 | 553 | 70 | 604 | 3.08e-123 | 375 |
| MS.gene54268.t1 | AT1G31950 | 36.617 | 538 | 331 | 5 | 22 | 553 | 70 | 603 | 5.41e-123 | 375 |
| MS.gene54268.t1 | AT3G14540 | 36.685 | 537 | 332 | 4 | 22 | 553 | 65 | 598 | 5.86e-122 | 372 |
| MS.gene54268.t1 | AT3G29410 | 35.478 | 544 | 337 | 5 | 17 | 553 | 64 | 600 | 7.80e-118 | 361 |
| MS.gene54268.t1 | AT5G44630 | 35.649 | 547 | 335 | 8 | 18 | 553 | 14 | 554 | 8.29e-116 | 354 |
| MS.gene54268.t1 | AT3G32030 | 33.573 | 557 | 356 | 7 | 2 | 553 | 54 | 601 | 2.00e-114 | 352 |
| MS.gene54268.t1 | AT1G33750 | 34.398 | 532 | 343 | 4 | 24 | 553 | 73 | 600 | 4.04e-114 | 352 |
| MS.gene54268.t1 | AT4G20210 | 33.945 | 545 | 347 | 7 | 17 | 553 | 58 | 597 | 1.90e-112 | 347 |
| MS.gene54268.t1 | AT3G29410 | 35.815 | 497 | 315 | 3 | 59 | 553 | 1 | 495 | 5.97e-112 | 342 |
| MS.gene54268.t1 | AT4G20200 | 35.603 | 514 | 317 | 8 | 48 | 552 | 92 | 600 | 1.99e-111 | 345 |
| MS.gene54268.t1 | AT4G13300 | 34.888 | 536 | 338 | 7 | 25 | 553 | 20 | 551 | 3.96e-111 | 342 |
| MS.gene54268.t1 | AT4G13280 | 34.270 | 534 | 340 | 7 | 27 | 553 | 22 | 551 | 7.64e-106 | 328 |
| MS.gene54268.t1 | AT4G15870 | 34.637 | 537 | 325 | 10 | 25 | 552 | 75 | 594 | 1.04e-105 | 330 |
| MS.gene54268.t1 | AT1G31950 | 36.933 | 463 | 269 | 6 | 22 | 471 | 70 | 522 | 1.53e-105 | 327 |
| MS.gene54268.t1 | AT3G29190 | 33.592 | 515 | 326 | 7 | 48 | 552 | 89 | 597 | 4.26e-105 | 328 |
| MS.gene54268.t1 | AT3G14540 | 37.892 | 446 | 270 | 3 | 22 | 463 | 65 | 507 | 7.62e-105 | 325 |
| MS.gene54268.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 48 | 552 | 92 | 601 | 9.58e-103 | 322 |
| MS.gene54268.t1 | AT4G20230 | 33.852 | 514 | 327 | 7 | 48 | 552 | 104 | 613 | 1.36e-102 | 322 |
| MS.gene54268.t1 | AT2G23230 | 34.432 | 546 | 343 | 9 | 16 | 551 | 55 | 595 | 3.79e-102 | 321 |
| MS.gene54268.t1 | AT3G29110 | 34.317 | 542 | 347 | 8 | 17 | 552 | 55 | 593 | 1.23e-100 | 316 |
| MS.gene54268.t1 | AT2G23230 | 34.249 | 546 | 339 | 10 | 16 | 551 | 55 | 590 | 1.59e-99 | 314 |
| MS.gene54268.t1 | AT1G66020 | 32.657 | 542 | 356 | 6 | 17 | 552 | 56 | 594 | 5.42e-98 | 310 |
| MS.gene54268.t1 | AT1G48800 | 32.418 | 546 | 353 | 9 | 17 | 552 | 63 | 602 | 3.76e-96 | 305 |
| MS.gene54268.t1 | AT4G16730 | 32.103 | 542 | 345 | 10 | 28 | 553 | 2 | 536 | 1.55e-94 | 299 |
| MS.gene54268.t1 | AT4G13280 | 33.333 | 534 | 315 | 9 | 27 | 553 | 22 | 521 | 5.61e-94 | 297 |
| MS.gene54268.t1 | AT4G16730 | 32.460 | 496 | 314 | 8 | 73 | 553 | 1 | 490 | 1.06e-90 | 287 |
| MS.gene54268.t1 | AT4G16740 | 32.188 | 553 | 348 | 13 | 14 | 553 | 23 | 561 | 9.13e-89 | 285 |
| MS.gene54268.t1 | AT1G61680 | 32.596 | 497 | 323 | 4 | 54 | 544 | 77 | 567 | 1.08e-88 | 285 |
| MS.gene54268.t1 | AT2G24210 | 31.777 | 557 | 359 | 11 | 10 | 553 | 39 | 587 | 6.70e-88 | 283 |
| MS.gene54268.t1 | AT1G61680 | 32.193 | 497 | 318 | 5 | 54 | 544 | 77 | 560 | 3.51e-85 | 275 |
| MS.gene54268.t1 | AT1G48820 | 31.169 | 539 | 321 | 11 | 17 | 549 | 63 | 557 | 9.19e-84 | 271 |
| MS.gene54268.t1 | AT5G48110 | 38.369 | 331 | 194 | 5 | 215 | 544 | 1 | 322 | 1.68e-83 | 263 |
| MS.gene54268.t1 | AT3G25830 | 30.700 | 557 | 358 | 13 | 15 | 553 | 45 | 591 | 1.09e-80 | 264 |
| MS.gene54268.t1 | AT3G25820 | 30.700 | 557 | 358 | 13 | 15 | 553 | 45 | 591 | 1.09e-80 | 264 |
| MS.gene54268.t1 | AT3G25810 | 30.880 | 557 | 360 | 11 | 15 | 553 | 45 | 594 | 1.96e-79 | 261 |
| MS.gene54268.t1 | AT4G16740 | 34.565 | 379 | 227 | 8 | 14 | 381 | 23 | 391 | 3.12e-69 | 228 |
| MS.gene54268.t1 | AT1G66020 | 34.688 | 369 | 232 | 6 | 17 | 379 | 56 | 421 | 1.48e-67 | 225 |
| MS.gene54268.t1 | AT3G25820 | 32.558 | 387 | 240 | 9 | 15 | 389 | 45 | 422 | 1.86e-62 | 212 |
| MS.gene54268.t1 | AT4G16740 | 34.756 | 328 | 194 | 7 | 14 | 330 | 23 | 341 | 1.08e-58 | 200 |
| MS.gene54268.t1 | AT4G16740 | 34.756 | 328 | 194 | 7 | 14 | 330 | 23 | 341 | 1.08e-58 | 200 |
| MS.gene54268.t1 | AT3G25820 | 33.333 | 327 | 199 | 7 | 15 | 330 | 45 | 363 | 1.06e-54 | 190 |
| MS.gene54268.t1 | AT3G25820 | 33.333 | 327 | 199 | 7 | 15 | 330 | 45 | 363 | 1.06e-54 | 190 |
| MS.gene54268.t1 | AT1G79460 | 25.344 | 509 | 323 | 19 | 70 | 539 | 274 | 764 | 1.87e-31 | 130 |
| MS.gene54268.t1 | AT1G61120 | 23.566 | 488 | 344 | 9 | 68 | 535 | 286 | 764 | 4.37e-27 | 116 |
| MS.gene54268.t1 | AT4G02780 | 29.119 | 261 | 155 | 6 | 68 | 300 | 329 | 587 | 9.08e-23 | 103 |
Find 0 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | - | 43199:5893-5912 | MS.gene54268:intergenic | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | + | 43199:3874-3893 | MS.gene54268:intron | 10.0% |
| !!! | CTTTTTTTATGTTTTTAATT+TGG | + | 43199:3504-3523 | MS.gene54268:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | + | 43199:4533-4552 | MS.gene54268:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | + | 43199:3218-3237 | MS.gene54268:CDS | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | - | 43199:4529-4548 | MS.gene54268:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | - | 43199:3053-3072 | MS.gene54268:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | + | 43199:3636-3655 | MS.gene54268:intron | 15.0% |
| !! | TTAACAACATTTAATTACAT+AGG | + | 43199:5851-5870 | MS.gene54268:intron | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | + | 43199:5387-5406 | MS.gene54268:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | - | 43199:4471-4490 | MS.gene54268:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | + | 43199:4036-4055 | MS.gene54268:intron | 15.0% |
| !!! | ATTTCATTTTAAACTTTGTA+TGG | + | 43199:5286-5305 | MS.gene54268:intron | 15.0% |
| !! | AAGAAAAATGTATCATCATT+AGG | + | 43199:5602-5621 | MS.gene54268:intron | 20.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | - | 43199:3126-3145 | MS.gene54268:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | + | 43199:3886-3905 | MS.gene54268:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | - | 43199:3812-3831 | MS.gene54268:intergenic | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+CGG | + | 43199:5526-5545 | MS.gene54268:intron | 20.0% |
| !! | TTGCAGAATTAATATTACAA+AGG | - | 43199:5768-5787 | MS.gene54268:intergenic | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | + | 43199:5027-5046 | MS.gene54268:intron | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | - | 43199:4824-4843 | MS.gene54268:intergenic | 20.0% |
| !!! | CTTTTTACTAAAAGATTTAC+AGG | - | 43199:3676-3695 | MS.gene54268:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | + | 43199:3170-3189 | MS.gene54268:intron | 20.0% |
| !!! | TATCTTGACATTTTAATTAG+TGG | + | 43199:5794-5813 | MS.gene54268:intron | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | + | 43199:5023-5042 | MS.gene54268:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | + | 43199:4536-4555 | MS.gene54268:intron | 20.0% |
| ! | AAACTTTGTATGGTTATCAA+AGG | + | 43199:5296-5315 | MS.gene54268:intron | 25.0% |
| ! | AACTTTGTATGGTTATCAAA+GGG | + | 43199:5297-5316 | MS.gene54268:intron | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | - | 43199:5273-5292 | MS.gene54268:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | - | 43199:4368-4387 | MS.gene54268:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | - | 43199:4695-4714 | MS.gene54268:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | + | 43199:4368-4387 | MS.gene54268:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | + | 43199:3366-3385 | MS.gene54268:CDS | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | + | 43199:5682-5701 | MS.gene54268:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | - | 43199:4367-4386 | MS.gene54268:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | + | 43199:3535-3554 | MS.gene54268:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | - | 43199:3471-3490 | MS.gene54268:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | + | 43199:3335-3354 | MS.gene54268:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | + | 43199:3607-3626 | MS.gene54268:intron | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | - | 43199:5448-5467 | MS.gene54268:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | + | 43199:4741-4760 | MS.gene54268:CDS | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | + | 43199:4994-5013 | MS.gene54268:intron | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | - | 43199:5173-5192 | MS.gene54268:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | - | 43199:5172-5191 | MS.gene54268:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | + | 43199:5026-5045 | MS.gene54268:intron | 25.0% |
| AAAAGAAAATTGACAACGCT+TGG | + | 43199:6380-6399 | MS.gene54268:CDS | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | - | 43199:3029-3048 | MS.gene54268:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | - | 43199:3028-3047 | MS.gene54268:intergenic | 30.0% | |
| AATTTACCCATCTTCAATCT+TGG | + | 43199:4906-4925 | MS.gene54268:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | - | 43199:4638-4657 | MS.gene54268:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | - | 43199:3789-3808 | MS.gene54268:intergenic | 30.0% | |
| CACATATCAACAATATCAAG+TGG | + | 43199:6009-6028 | MS.gene54268:CDS | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | + | 43199:2822-2841 | MS.gene54268:CDS | 30.0% | |
| GAACAAGAAATGAAGAAAGA+AGG | + | 43199:5127-5146 | MS.gene54268:CDS | 30.0% | |
| GAGGGAATATGATTTGAATA+GGG | + | 43199:6336-6355 | MS.gene54268:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | + | 43199:4179-4198 | MS.gene54268:CDS | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | + | 43199:6318-6337 | MS.gene54268:CDS | 30.0% | |
| TAACTATATACCAACAACAG+AGG | + | 43199:5978-5997 | MS.gene54268:CDS | 30.0% | |
| TGAGGGAATATGATTTGAAT+AGG | + | 43199:6335-6354 | MS.gene54268:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | + | 43199:4185-4204 | MS.gene54268:CDS | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | + | 43199:4539-4558 | MS.gene54268:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | - | 43199:4653-4672 | MS.gene54268:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | + | 43199:5422-5441 | MS.gene54268:intron | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | + | 43199:3294-3313 | MS.gene54268:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | + | 43199:3606-3625 | MS.gene54268:intron | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | + | 43199:5087-5106 | MS.gene54268:CDS | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | - | 43199:4422-4441 | MS.gene54268:intergenic | 30.0% |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | - | 43199:6368-6387 | MS.gene54268:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | - | 43199:4654-4673 | MS.gene54268:intergenic | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | + | 43199:3095-3114 | MS.gene54268:intron | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | + | 43199:4752-4771 | MS.gene54268:CDS | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | - | 43199:6381-6400 | MS.gene54268:intergenic | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | + | 43199:2965-2984 | MS.gene54268:intron | 30.0% |
| !! | CTCTTACTTCTTTTAAGAAG+GGG | - | 43199:5171-5190 | MS.gene54268:intergenic | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | - | 43199:3928-3947 | MS.gene54268:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | - | 43199:3277-3296 | MS.gene54268:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | + | 43199:4606-4625 | MS.gene54268:CDS | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | - | 43199:3276-3295 | MS.gene54268:intergenic | 30.0% |
| !!! | TATCCACGGTTTTATTAACT+CGG | + | 43199:5540-5559 | MS.gene54268:intron | 30.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | + | 43199:6283-6302 | MS.gene54268:intron | 35.0% | |
| AAAGATTTACAGGCTAACAG+TGG | - | 43199:3666-3685 | MS.gene54268:intergenic | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | + | 43199:5939-5958 | MS.gene54268:CDS | 35.0% | |
| ACACACGTAAGAATAGGTAA+TGG | - | 43199:6445-6464 | MS.gene54268:intergenic | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | + | 43199:6048-6067 | MS.gene54268:CDS | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | + | 43199:4077-4096 | MS.gene54268:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | + | 43199:4417-4436 | MS.gene54268:CDS | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | + | 43199:4107-4126 | MS.gene54268:CDS | 35.0% | |
| ATGTAATCTGCTGAAGACAT+GGG | - | 43199:2805-2824 | MS.gene54268:intergenic | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | + | 43199:6396-6415 | MS.gene54268:CDS | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | + | 43199:6317-6336 | MS.gene54268:CDS | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | - | 43199:5702-5721 | MS.gene54268:intergenic | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | - | 43199:3014-3033 | MS.gene54268:intergenic | 35.0% | |
| GACAAAAGACATCTTTGACT+GGG | + | 43199:6080-6099 | MS.gene54268:CDS | 35.0% | |
| GATGACACATATGATGCATA+TGG | + | 43199:4709-4728 | MS.gene54268:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | - | 43199:5076-5095 | MS.gene54268:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | + | 43199:6047-6066 | MS.gene54268:CDS | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | - | 43199:4915-4934 | MS.gene54268:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | + | 43199:5042-5061 | MS.gene54268:intron | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | + | 43199:2900-2919 | MS.gene54268:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | + | 43199:5306-5325 | MS.gene54268:intron | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | - | 43199:4916-4935 | MS.gene54268:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | - | 43199:4652-4671 | MS.gene54268:intergenic | 35.0% | |
| TTGAGAACACACGTAAGAAT+AGG | - | 43199:6451-6470 | MS.gene54268:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | - | 43199:4261-4280 | MS.gene54268:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | + | 43199:4191-4210 | MS.gene54268:CDS | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | - | 43199:4416-4435 | MS.gene54268:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | + | 43199:4862-4881 | MS.gene54268:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | + | 43199:3293-3312 | MS.gene54268:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | - | 43199:6117-6136 | MS.gene54268:intergenic | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | + | 43199:4377-4396 | MS.gene54268:CDS | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | - | 43199:2832-2851 | MS.gene54268:intergenic | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | - | 43199:5434-5453 | MS.gene54268:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | - | 43199:2904-2923 | MS.gene54268:intergenic | 35.0% |
| !! | ATAGGTAATGGAACTTCAGT+TGG | - | 43199:6433-6452 | MS.gene54268:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | + | 43199:3415-3434 | MS.gene54268:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | + | 43199:4543-4562 | MS.gene54268:intron | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | - | 43199:3929-3948 | MS.gene54268:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | + | 43199:3416-3435 | MS.gene54268:CDS | 35.0% |
| !! | TTCTTTTAAGAAGGGGTCAA+GGG | - | 43199:5164-5183 | MS.gene54268:intergenic | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | + | 43199:4605-4624 | MS.gene54268:CDS | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | - | 43199:2877-2896 | MS.gene54267:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | - | 43199:2876-2895 | MS.gene54267:intergenic | 40.0% | |
| AACATTGGTCAGAGATGTTG+AGG | + | 43199:4122-4141 | MS.gene54268:CDS | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | + | 43199:4123-4142 | MS.gene54268:CDS | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | - | 43199:4169-4188 | MS.gene54268:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | - | 43199:4592-4611 | MS.gene54268:intergenic | 40.0% | |
| AGGACATGTTTCTTCGTACT+TGG | + | 43199:6303-6322 | MS.gene54268:CDS | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | - | 43199:3413-3432 | MS.gene54268:intergenic | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | - | 43199:5965-5984 | MS.gene54268:intergenic | 40.0% | |
| CGACAAAAGACATCTTTGAC+TGG | + | 43199:6079-6098 | MS.gene54268:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | + | 43199:3257-3276 | MS.gene54268:CDS | 40.0% | |
| GAACCGAGTTAATAAAACCG+TGG | - | 43199:5546-5565 | MS.gene54268:intergenic | 40.0% | |
| GATAACTACACACACTCTGA+CGG | + | 43199:6508-6527 | MS.gene54268:CDS | 40.0% | |
| GATGTAATCTGCTGAAGACA+TGG | - | 43199:2806-2825 | MS.gene54268:intergenic | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | + | 43199:3191-3210 | MS.gene54268:intron | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | - | 43199:4346-4365 | MS.gene54268:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | + | 43199:4158-4177 | MS.gene54268:CDS | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | + | 43199:5045-5064 | MS.gene54268:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | + | 43199:5054-5073 | MS.gene54268:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | + | 43199:6134-6153 | MS.gene54268:CDS | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | - | 43199:4251-4270 | MS.gene54268:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | + | 43199:6042-6061 | MS.gene54268:CDS | 40.0% | |
| TTTGCCGCAGTATTCATATC+AGG | - | 43199:3198-3217 | MS.gene54268:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | + | 43199:3746-3765 | MS.gene54268:intron | 40.0% |
| !! | CAATCTCTCGCGTTTTATTG+AGG | + | 43199:6468-6487 | MS.gene54268:CDS | 40.0% |
| !! | CTTCTTTTAAGAAGGGGTCA+AGG | - | 43199:5165-5184 | MS.gene54268:intergenic | 40.0% |
| AACCAATTCAAGGACGAGCA+AGG | + | 43199:4087-4106 | MS.gene54268:CDS | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | - | 43199:6038-6057 | MS.gene54268:intergenic | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | + | 43199:2864-2883 | MS.gene54268:CDS | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | + | 43199:4647-4666 | MS.gene54268:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | + | 43199:6023-6042 | MS.gene54268:CDS | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | + | 43199:6127-6146 | MS.gene54268:CDS | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | + | 43199:4305-4324 | MS.gene54268:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | + | 43199:3450-3469 | MS.gene54268:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | + | 43199:6133-6152 | MS.gene54268:CDS | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | + | 43199:5947-5966 | MS.gene54268:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | + | 43199:4165-4184 | MS.gene54268:CDS | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | + | 43199:4410-4429 | MS.gene54268:CDS | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | + | 43199:6155-6174 | MS.gene54268:CDS | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | - | 43199:6039-6058 | MS.gene54268:intergenic | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | - | 43199:4250-4269 | MS.gene54268:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | - | 43199:5991-6010 | MS.gene54268:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | - | 43199:5945-5964 | MS.gene54268:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | - | 43199:4092-4111 | MS.gene54268:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | - | 43199:4318-4337 | MS.gene54268:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | + | 43199:4549-4568 | MS.gene54268:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | + | 43199:3424-3443 | MS.gene54268:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | + | 43199:3432-3451 | MS.gene54268:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | + | 43199:3726-3745 | MS.gene54268:intron | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | - | 43199:4247-4266 | MS.gene54268:intergenic | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | + | 43199:2863-2882 | MS.gene54268:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | + | 43199:4298-4317 | MS.gene54268:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | + | 43199:2865-2884 | MS.gene54268:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | + | 43199:4221-4240 | MS.gene54268:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | + | 43199:4204-4223 | MS.gene54268:CDS | 50.0% |
| AATCTCCCCAAACGCTAGGG+TGG | - | 43199:2873-2892 | MS.gene54268:intergenic | 55.0% | |
| AGGACTCAATCGGGTGGCCA+TGG | - | 43199:4241-4260 | MS.gene54268:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | - | 43199:4233-4252 | MS.gene54268:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43199 | gene | 2805 | 6570 | 2805 | ID=MS.gene54268 |
| 43199 | mRNA | 2805 | 6570 | 2805 | ID=MS.gene54268.t1;Parent=MS.gene54268 |
| 43199 | exon | 2805 | 2921 | 2805 | ID=MS.gene54268.t1.exon1;Parent=MS.gene54268.t1 |
| 43199 | CDS | 2805 | 2921 | 2805 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| 43199 | exon | 3192 | 3471 | 3192 | ID=MS.gene54268.t1.exon2;Parent=MS.gene54268.t1 |
| 43199 | CDS | 3192 | 3471 | 3192 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| 43199 | exon | 4079 | 4451 | 4079 | ID=MS.gene54268.t1.exon3;Parent=MS.gene54268.t1 |
| 43199 | CDS | 4079 | 4451 | 4079 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| 43199 | exon | 4555 | 4773 | 4555 | ID=MS.gene54268.t1.exon4;Parent=MS.gene54268.t1 |
| 43199 | CDS | 4555 | 4773 | 4555 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| 43199 | exon | 5045 | 5183 | 5045 | ID=MS.gene54268.t1.exon5;Parent=MS.gene54268.t1 |
| 43199 | CDS | 5045 | 5183 | 5045 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| 43199 | exon | 5928 | 6176 | 5928 | ID=MS.gene54268.t1.exon6;Parent=MS.gene54268.t1 |
| 43199 | CDS | 5928 | 6176 | 5928 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| 43199 | exon | 6289 | 6570 | 6289 | ID=MS.gene54268.t1.exon7;Parent=MS.gene54268.t1 |
| 43199 | CDS | 6289 | 6570 | 6289 | ID=cds.MS.gene54268.t1;Parent=MS.gene54268.t1 |
| Gene Sequence |
| Protein sequence |
