Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54382.t1 | XP_003621014.1 | 96.4 | 394 | 14 | 0 | 1 | 394 | 1 | 394 | 1.00E-217 | 765.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54382.t1 | Q944L7 | 62.3 | 395 | 137 | 7 | 5 | 394 | 4 | 391 | 8.2e-136 | 485.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54382.t1 | G7KWQ2 | 96.4 | 394 | 14 | 0 | 1 | 394 | 1 | 394 | 7.2e-218 | 765.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene54382 | 0.821131 | 4.75E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene54382 | 0.808635 | 2.81E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene54382 | 0.825889 | 3.66E-54 | -1.69E-46 |
| MS.gene050941 | MS.gene54382 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene54382 | 0.837913 | 3.93E-57 | -1.69E-46 |
| MS.gene05439 | MS.gene54382 | 0.801676 | 8.05E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene54382 | 0.84452 | 7.18E-59 | -1.69E-46 |
| MS.gene054893 | MS.gene54382 | 0.846478 | 2.12E-59 | -1.69E-46 |
| MS.gene056831 | MS.gene54382 | 0.812594 | 3.92E-51 | -1.69E-46 |
| MS.gene057155 | MS.gene54382 | 0.815137 | 1.08E-51 | -1.69E-46 |
| MS.gene058429 | MS.gene54382 | 0.808315 | 3.29E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene54382 | 0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene54382 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene54382 | 0.810763 | 9.80E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene54382 | 0.814848 | 1.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54382.t1 | MTR_7g006040 | 97.970 | 394 | 8 | 0 | 1 | 394 | 1 | 394 | 0.0 | 794 |
| MS.gene54382.t1 | MTR_8g064720 | 69.272 | 371 | 105 | 5 | 7 | 372 | 26 | 392 | 1.05e-176 | 498 |
| MS.gene54382.t1 | MTR_5g072900 | 38.554 | 332 | 175 | 9 | 48 | 355 | 60 | 386 | 2.97e-57 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54382.t1 | AT1G18480 | 63.038 | 395 | 134 | 7 | 5 | 394 | 4 | 391 | 1.01e-172 | 488 |
| MS.gene54382.t1 | AT1G07010 | 36.036 | 333 | 184 | 9 | 48 | 356 | 49 | 376 | 3.62e-53 | 181 |
| MS.gene54382.t1 | AT1G07010 | 35.435 | 333 | 182 | 10 | 48 | 356 | 49 | 372 | 2.14e-49 | 171 |
| MS.gene54382.t1 | AT1G07010 | 34.302 | 344 | 186 | 9 | 48 | 356 | 49 | 387 | 3.46e-47 | 166 |
Find 128 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTAGGGTTGCGGCTTTA+AGG | 0.182522 | 7.4:-93539966 | MS.gene54382:CDS |
| AATCAAAATCCTCTACTTAT+TGG | 0.186269 | 7.4:-93540436 | MS.gene54382:CDS |
| TTGAAAGAACATGTTGATTA+TGG | 0.215908 | 7.4:-93539856 | MS.gene54382:CDS |
| AAGAGAGGAGATTGGGAATT+TGG | 0.242761 | 7.4:+93540715 | None:intergenic |
| TGAGGTTAGTGATTGGTATA+AGG | 0.246230 | 7.4:-93539815 | MS.gene54382:CDS |
| AAGAGTTTCATGATGGGTTT+AGG | 0.248900 | 7.4:-93539987 | MS.gene54382:CDS |
| TGGTGTTAAGAGGATGATTA+TGG | 0.249368 | 7.4:-93539668 | MS.gene54382:CDS |
| GGCGATGCCAAGAGCTTCTT+TGG | 0.255609 | 7.4:+93540545 | None:intergenic |
| TGGTGGTTTGCCCGAGGTTT+TGG | 0.263789 | 7.4:-93539560 | MS.gene54382:CDS |
| ACGTGGCGTTTCGTGGTGTT+AGG | 0.288942 | 7.4:-93540011 | MS.gene54382:CDS |
| TTATTCATCTGATTATATAA+AGG | 0.310568 | 7.4:+93539499 | None:intergenic |
| TAATGGTGTCTGCGAAAATA+AGG | 0.312538 | 7.4:-93539620 | MS.gene54382:CDS |
| TACACAAAATGTTACTGTTT+TGG | 0.322237 | 7.4:-93539914 | MS.gene54382:CDS |
| GAGCTTCTTTGGATTTCTTA+AGG | 0.341904 | 7.4:+93540556 | None:intergenic |
| ATCGCCATCGGTGACCTTCA+TGG | 0.349243 | 7.4:-93540582 | MS.gene54382:CDS |
| TTTATATAATCAGATGAATA+AGG | 0.349298 | 7.4:-93539497 | MS.gene54382:CDS |
| GACAATAAGGCGGCGAAAAC+CGG | 0.357356 | 7.4:+93539779 | None:intergenic |
| GAGGTTAGTGATTGGTATAA+GGG | 0.359259 | 7.4:-93539814 | MS.gene54382:CDS |
| AGGCGAGTGGGGATTGGCGG+TGG | 0.359575 | 7.4:+93540624 | None:intergenic |
| GGGAGGCGAGTGGGGATTGG+CGG | 0.360185 | 7.4:+93540621 | None:intergenic |
| GATTGGTATAAGGGTTTGTT+TGG | 0.360244 | 7.4:-93539805 | MS.gene54382:CDS |
| GGGAAGGTGGAAGAAGGGTT+TGG | 0.362537 | 7.4:-93539460 | MS.gene54382:CDS |
| CGAATGGACCGATTTCAAAA+AGG | 0.363226 | 7.4:-93539942 | MS.gene54382:CDS |
| ATTCAGAAGGAAGGGATTAA+TGG | 0.366442 | 7.4:-93539637 | MS.gene54382:CDS |
| GGTGGTGATGATGGCGGAGG+TGG | 0.369542 | 7.4:+93540642 | None:intergenic |
| AGAGTTTCATGATGGGTTTA+GGG | 0.373309 | 7.4:-93539986 | MS.gene54382:CDS |
| GCATTCCTTCCCCGACAATA+AGG | 0.375199 | 7.4:+93539766 | None:intergenic |
| TTCATGATGGGTTTAGGGCT+AGG | 0.377495 | 7.4:-93539981 | MS.gene54382:CDS |
| GGGGAAGGAATGCACTTGTT+TGG | 0.383176 | 7.4:-93539756 | MS.gene54382:CDS |
| AATTCAAAGTTTGGTTAGAA+TGG | 0.384906 | 7.4:-93540110 | MS.gene54382:CDS |
| TATGGGTTGGAGAAGATTAA+TGG | 0.389368 | 7.4:-93539838 | MS.gene54382:CDS |
| ATGGCGGAGGTGGGAGGAAA+AGG | 0.398199 | 7.4:+93540652 | None:intergenic |
| TGAAAGAACATGTTGATTAT+GGG | 0.411575 | 7.4:-93539855 | MS.gene54382:CDS |
| ATAAGGGTTTGTTTGGTAAC+CGG | 0.411872 | 7.4:-93539798 | MS.gene54382:CDS |
| GGGATTGGCGGTGGTGATGA+TGG | 0.421506 | 7.4:+93540633 | None:intergenic |
| TCATGATGGGTTTAGGGCTA+GGG | 0.424497 | 7.4:-93539980 | MS.gene54382:CDS |
| AAACGCCAAGCCGCGATTCA+TGG | 0.425022 | 7.4:-93540405 | MS.gene54382:CDS |
| CGACGATTCCTGGTGTTAAG+AGG | 0.425093 | 7.4:-93539678 | MS.gene54382:CDS |
| GGCAATTTCATCACCATGAA+TGG | 0.428225 | 7.4:-93540381 | MS.gene54382:CDS |
| GATCTCGTGGTTACCATTCA+TGG | 0.435438 | 7.4:+93540368 | None:intergenic |
| ATGTAAAGGTTTGGAAGAAA+AGG | 0.436989 | 7.4:-93540058 | MS.gene54382:CDS |
| ATGAATGAAGAGAGGAGATT+GGG | 0.441668 | 7.4:+93540708 | None:intergenic |
| CGTGGCGTTTCGTGGTGTTA+GGG | 0.450367 | 7.4:-93540010 | MS.gene54382:CDS |
| CGCCGCCTTATTGTCGGGGA+AGG | 0.455393 | 7.4:-93539771 | MS.gene54382:CDS |
| AATGTTCACGTGGCGTTTCG+TGG | 0.456234 | 7.4:-93540018 | MS.gene54382:CDS |
| GCGATTAAGCGTGACGGAGA+AGG | 0.456235 | 7.4:+93540600 | None:intergenic |
| GAAGGGAGGCGAGTGGGGAT+TGG | 0.457172 | 7.4:+93540618 | None:intergenic |
| TCTGCGAAAATAAGGCGATT+AGG | 0.459167 | 7.4:-93539612 | MS.gene54382:CDS |
| GATGAATGAAGAGAGGAGAT+TGG | 0.459978 | 7.4:+93540707 | None:intergenic |
| GATGTTGGGAAGGTGGAAGA+AGG | 0.466879 | 7.4:-93539466 | MS.gene54382:CDS |
| GTGTTGAAGAATTCAAAGTT+TGG | 0.468250 | 7.4:-93540119 | MS.gene54382:CDS |
| AATAAGGAAAATGTGGATGT+TGG | 0.471510 | 7.4:-93539481 | MS.gene54382:CDS |
| TGGGTTTAGGGCTAGGGTTG+CGG | 0.472943 | 7.4:-93539974 | MS.gene54382:CDS |
| GGTGTTAAGAGGATGATTAT+GGG | 0.476200 | 7.4:-93539667 | MS.gene54382:CDS |
| AGACCCGCCGGTGTAATTAC+CGG | 0.495527 | 7.4:+93540506 | None:intergenic |
| GTGGTGATGATGGCGGAGGT+GGG | 0.495874 | 7.4:+93540643 | None:intergenic |
| TTTCATCGCCTCCGCGGTCG+AGG | 0.498726 | 7.4:+93540457 | None:intergenic |
| ATTGGCGGTGGTGATGATGG+CGG | 0.499192 | 7.4:+93540636 | None:intergenic |
| GACGGAGAAGGGAGGCGAGT+GGG | 0.499971 | 7.4:+93540612 | None:intergenic |
| AAATGTGGATGTTGGGAAGG+TGG | 0.504316 | 7.4:-93539473 | MS.gene54382:CDS |
| TCAGATGAATAAGGAAAATG+TGG | 0.505988 | 7.4:-93539488 | MS.gene54382:CDS |
| GTTAGGGAAGAGTTTCATGA+TGG | 0.506126 | 7.4:-93539994 | MS.gene54382:CDS |
| AAGAAATCCAAAGAAGCTCT+TGG | 0.507171 | 7.4:-93540552 | MS.gene54382:CDS |
| ATGTTGGGAAGGTGGAAGAA+GGG | 0.512967 | 7.4:-93539465 | MS.gene54382:CDS |
| AAAGAAGCTCTTGGCATCGC+CGG | 0.517515 | 7.4:-93540543 | MS.gene54382:CDS |
| CGATTAAGCGTGACGGAGAA+GGG | 0.518870 | 7.4:+93540601 | None:intergenic |
| AGATTGACCGTTATGGGGTG+AGG | 0.524683 | 7.4:-93539537 | MS.gene54382:CDS |
| GCCTTGACTTCCACTTGCCT+AGG | 0.528320 | 7.4:+93539409 | None:intergenic |
| TGCCACCATGAATCGCGGCT+TGG | 0.530611 | 7.4:+93540400 | None:intergenic |
| ACGGAGAAGGGAGGCGAGTG+GGG | 0.530658 | 7.4:+93540613 | None:intergenic |
| GCAAGTGGAAGTCAAGGCTT+AGG | 0.533119 | 7.4:-93539404 | None:intergenic |
| ATGTCGAAAGGATGCGGTGG+TGG | 0.533822 | 7.4:-93539577 | MS.gene54382:CDS |
| CGGTCAATCTCCAAAACCTC+GGG | 0.534492 | 7.4:+93539550 | None:intergenic |
| ACCGGAGGAGTCGATTAATC+CGG | 0.536876 | 7.4:+93540524 | None:intergenic |
| TTAATGGTGAGGTTAGTGAT+TGG | 0.539710 | 7.4:-93539822 | MS.gene54382:CDS |
| GACATCGCCGACTTGAACGA+CGG | 0.541832 | 7.4:+93540479 | None:intergenic |
| ATAAGGAAAATGTGGATGTT+GGG | 0.548289 | 7.4:-93539480 | MS.gene54382:CDS |
| ACCTAGGCAAGTGGAAGTCA+AGG | 0.549753 | 7.4:-93539410 | MS.gene54382:CDS |
| ATTTCTTAAGGTCGCCATGA+AGG | 0.558509 | 7.4:+93540568 | None:intergenic |
| TTAGGGAAGAGTTTCATGAT+GGG | 0.558605 | 7.4:-93539993 | MS.gene54382:CDS |
| ATGCGGTGGTGGTTTGCCCG+AGG | 0.563566 | 7.4:-93539566 | MS.gene54382:CDS |
| GGCGGTGGTGATGATGGCGG+AGG | 0.566588 | 7.4:+93540639 | None:intergenic |
| TGACGGAGAAGGGAGGCGAG+TGG | 0.567881 | 7.4:+93540611 | None:intergenic |
| TTGTTGCTTAATAATCAAGA+TGG | 0.574078 | 7.4:-93539436 | MS.gene54382:CDS |
| GTGATGATGGCGGAGGTGGG+AGG | 0.574786 | 7.4:+93540646 | None:intergenic |
| ATCGATGTTGGTATGTCGAA+AGG | 0.575221 | 7.4:-93539589 | MS.gene54382:CDS |
| GAGGAAAAGGCCGCCGCTGA+CGG | 0.576012 | 7.4:+93540665 | None:intergenic |
| GTTGGAGAAGATTAATGGTG+AGG | 0.579243 | 7.4:-93539833 | MS.gene54382:CDS |
| GGGCATACGATTCAGAAGGA+AGG | 0.584494 | 7.4:-93539646 | MS.gene54382:CDS |
| TCAATATCCTCACCCCATAA+CGG | 0.588832 | 7.4:+93539530 | None:intergenic |
| TGGTTAGAATGGTTTCGTCA+AGG | 0.592125 | 7.4:-93540099 | MS.gene54382:CDS |
| TCCTCCGGTAATTACACCGG+CGG | 0.593196 | 7.4:-93540510 | MS.gene54382:CDS |
| TCTGCCACCGTCGTTCAAGT+CGG | 0.596345 | 7.4:-93540486 | MS.gene54382:CDS |
| CCGTCACGCTTAATCGCCAT+CGG | 0.598482 | 7.4:-93540594 | MS.gene54382:CDS |
| CACGAGATCATGAACGCTGA+AGG | 0.599053 | 7.4:-93540354 | MS.gene54382:intron |
| ACGGTCAATCTCCAAAACCT+CGG | 0.600316 | 7.4:+93539549 | None:intergenic |
| GGCATACGATTCAGAAGGAA+GGG | 0.601131 | 7.4:-93539645 | MS.gene54382:CDS |
| GTCGACTTCTCCGTCAGCGG+CGG | 0.604792 | 7.4:-93540675 | MS.gene54382:CDS |
| AGAACATGTTGATTATGGGT+TGG | 0.606486 | 7.4:-93539851 | MS.gene54382:CDS |
| GCCGGATTAATCGACTCCTC+CGG | 0.607559 | 7.4:-93540525 | MS.gene54382:CDS |
| AAGGCGATTAGGATCGATGT+TGG | 0.608483 | 7.4:-93539601 | MS.gene54382:CDS |
| GGAAAATGTGGATGTTGGGA+AGG | 0.610345 | 7.4:-93539476 | MS.gene54382:CDS |
| AACGACGGTGGCAGACCCGC+CGG | 0.612556 | 7.4:+93540494 | None:intergenic |
| CTTCAGCGTTCATGATCTCG+TGG | 0.614365 | 7.4:+93540355 | None:intergenic |
| CCTCCGGTAATTACACCGGC+GGG | 0.616070 | 7.4:-93540509 | MS.gene54382:CDS |
| ATAATCATCCTCTTAACACC+AGG | 0.619952 | 7.4:+93539670 | None:intergenic |
| GTTGCGGCTTTAAGGCCGAA+TGG | 0.620496 | 7.4:-93539958 | MS.gene54382:CDS |
| TTTGGAGATTGACCGTTATG+GGG | 0.621026 | 7.4:-93539542 | MS.gene54382:CDS |
| GTCGGCGATGTCCTCGACCG+CGG | 0.621064 | 7.4:-93540468 | MS.gene54382:CDS |
| TATGGGGCATACGATTCAGA+AGG | 0.628721 | 7.4:-93539650 | MS.gene54382:CDS |
| ATAATCAAGATGGTAGACCT+AGG | 0.629740 | 7.4:-93539426 | MS.gene54382:CDS |
| GTGTTAAGAGGATGATTATG+GGG | 0.631883 | 7.4:-93539666 | MS.gene54382:CDS |
| GTCGCCATGAAGGTCACCGA+TGG | 0.639408 | 7.4:+93540578 | None:intergenic |
| TTTGTCGACTTCTCCGTCAG+CGG | 0.640574 | 7.4:-93540678 | MS.gene54382:CDS |
| AGATGGTAGACCTAGGCAAG+TGG | 0.641426 | 7.4:-93539419 | MS.gene54382:CDS |
| ATGTGTCGATGAATGAAGAG+AGG | 0.641912 | 7.4:+93540700 | None:intergenic |
| GTTGGTATGTCGAAAGGATG+CGG | 0.642403 | 7.4:-93539583 | MS.gene54382:CDS |
| GAAATTGCCACCATGAATCG+CGG | 0.648590 | 7.4:+93540395 | None:intergenic |
| TTCCTTCCCCGACAATAAGG+CGG | 0.649751 | 7.4:+93539769 | None:intergenic |
| GACTCCTCCGGTAATTACAC+CGG | 0.653662 | 7.4:-93540513 | MS.gene54382:CDS |
| GGCGATGTCCTCGACCGCGG+AGG | 0.659166 | 7.4:-93540465 | MS.gene54382:CDS |
| CGCCAAGCCGCGATTCATGG+TGG | 0.664688 | 7.4:-93540402 | MS.gene54382:CDS |
| CCCGCCGGTGTAATTACCGG+AGG | 0.678857 | 7.4:+93540509 | None:intergenic |
| TCCATTAGAAAATGTTCACG+TGG | 0.684935 | 7.4:-93540028 | MS.gene54382:CDS |
| CCGATGGCGATTAAGCGTGA+CGG | 0.690691 | 7.4:+93540594 | None:intergenic |
| TTAAGCGTGACGGAGAAGGG+AGG | 0.696214 | 7.4:+93540604 | None:intergenic |
| ATCGCCGACTTGAACGACGG+TGG | 0.711479 | 7.4:+93540482 | None:intergenic |
| GGTATGTCGAAAGGATGCGG+TGG | 0.743976 | 7.4:-93539580 | MS.gene54382:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAAATCTATGTAA+AGG | - | chr7.4:93540086-93540105 | MS.gene54382:CDS | 15.0% |
| !! | TTATTCATCTGATTATATAA+AGG | + | chr7.4:93540662-93540681 | None:intergenic | 15.0% |
| !! | TTTATATAATCAGATGAATA+AGG | - | chr7.4:93540661-93540680 | MS.gene54382:CDS | 15.0% |
| !!! | TTAGTATTGAGTAATTTGAT+TGG | + | chr7.4:93539887-93539906 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTGTTTACACT+AGG | - | chr7.4:93539830-93539849 | MS.gene54382:CDS | 20.0% |
| ! | AATCAAAATCCTCTACTTAT+TGG | - | chr7.4:93539722-93539741 | MS.gene54382:CDS | 25.0% |
| ! | AATTCAAAGTTTGGTTAGAA+TGG | - | chr7.4:93540048-93540067 | MS.gene54382:CDS | 25.0% |
| ! | GAAAAATCTATGTAAAGGTT+TGG | - | chr7.4:93540091-93540110 | MS.gene54382:CDS | 25.0% |
| !! | TACACAAAATGTTACTGTTT+TGG | - | chr7.4:93540244-93540263 | MS.gene54382:intron | 25.0% |
| !! | TGAAAGAACATGTTGATTAT+GGG | - | chr7.4:93540303-93540322 | MS.gene54382:intron | 25.0% |
| !! | TTGAAAGAACATGTTGATTA+TGG | - | chr7.4:93540302-93540321 | MS.gene54382:intron | 25.0% |
| !! | TTGTTGCTTAATAATCAAGA+TGG | - | chr7.4:93540722-93540741 | MS.gene54382:CDS | 25.0% |
| !!! | GTAAAGAACCTTTTTGAAAT+CGG | + | chr7.4:93540227-93540246 | None:intergenic | 25.0% |
| AATAAGGAAAATGTGGATGT+TGG | - | chr7.4:93540677-93540696 | MS.gene54382:CDS | 30.0% | |
| ATAAGGAAAATGTGGATGTT+GGG | - | chr7.4:93540678-93540697 | MS.gene54382:CDS | 30.0% | |
| ATGTAAAGGTTTGGAAGAAA+AGG | - | chr7.4:93540100-93540119 | MS.gene54382:CDS | 30.0% | |
| CAAATACATCATGCTTTGAT+TGG | - | chr7.4:93539923-93539942 | MS.gene54382:CDS | 30.0% | |
| GTGTTGAAGAATTCAAAGTT+TGG | - | chr7.4:93540039-93540058 | MS.gene54382:CDS | 30.0% | |
| TCAGATGAATAAGGAAAATG+TGG | - | chr7.4:93540670-93540689 | MS.gene54382:CDS | 30.0% | |
| ! | ACTATTCTTTTCTCTGTTGA+AGG | - | chr7.4:93539990-93540009 | MS.gene54382:CDS | 30.0% |
| ! | GATTCAATTTTTGTTCATGG+TGG | - | chr7.4:93540275-93540294 | MS.gene54382:intron | 30.0% |
| ! | GGCTTAGAAAATTTTCAGAT+GGG | - | chr7.4:93540423-93540442 | MS.gene54382:CDS | 30.0% |
| ! | GGTGATTCAATTTTTGTTCA+TGG | - | chr7.4:93540272-93540291 | MS.gene54382:intron | 30.0% |
| ! | TGGCTTAGAAAATTTTCAGA+TGG | - | chr7.4:93540422-93540441 | MS.gene54382:CDS | 30.0% |
| !!! | AATGTTACTGTTTTGGTAGT+TGG | - | chr7.4:93540251-93540270 | MS.gene54382:intron | 30.0% |
| AAGAAATCCAAAGAAGCTCT+TGG | - | chr7.4:93539606-93539625 | MS.gene54382:CDS | 35.0% | |
| ATAATCAAGATGGTAGACCT+AGG | - | chr7.4:93540732-93540751 | MS.gene54382:CDS | 35.0% | |
| ATAATCATCCTCTTAACACC+AGG | + | chr7.4:93540491-93540510 | None:intergenic | 35.0% | |
| ATGAATGAAGAGAGGAGATT+GGG | + | chr7.4:93539453-93539472 | None:intergenic | 35.0% | |
| ATTCAGAAGGAAGGGATTAA+TGG | - | chr7.4:93540521-93540540 | MS.gene54382:CDS | 35.0% | |
| GAGCTTCTTTGGATTTCTTA+AGG | + | chr7.4:93539605-93539624 | None:intergenic | 35.0% | |
| GAGGTTAGTGATTGGTATAA+GGG | - | chr7.4:93540344-93540363 | MS.gene54382:intron | 35.0% | |
| GGTGTTAAGAGGATGATTAT+GGG | - | chr7.4:93540491-93540510 | MS.gene54382:CDS | 35.0% | |
| GTGTTAAGAGGATGATTATG+GGG | - | chr7.4:93540492-93540511 | MS.gene54382:CDS | 35.0% | |
| TAATGGTGTCTGCGAAAATA+AGG | - | chr7.4:93540538-93540557 | MS.gene54382:CDS | 35.0% | |
| TCCATTAGAAAATGTTCACG+TGG | - | chr7.4:93540130-93540149 | MS.gene54382:CDS | 35.0% | |
| TGAGGTTAGTGATTGGTATA+AGG | - | chr7.4:93540343-93540362 | MS.gene54382:intron | 35.0% | |
| TTAATGGTGAGGTTAGTGAT+TGG | - | chr7.4:93540336-93540355 | MS.gene54382:intron | 35.0% | |
| TTAGGGAAGAGTTTCATGAT+GGG | - | chr7.4:93540165-93540184 | MS.gene54382:intron | 35.0% | |
| TTCCGTTTCGCTACAAAAAA+CGG | - | chr7.4:93540017-93540036 | MS.gene54382:CDS | 35.0% | |
| ! | AGAACATGTTGATTATGGGT+TGG | - | chr7.4:93540307-93540326 | MS.gene54382:intron | 35.0% |
| ! | ATAAGGGTTTGTTTGGTAAC+CGG | - | chr7.4:93540360-93540379 | MS.gene54382:CDS | 35.0% |
| ! | GATTGGTATAAGGGTTTGTT+TGG | - | chr7.4:93540353-93540372 | MS.gene54382:intron | 35.0% |
| ! | GTAGACAAGTTTTACACTGT+TGG | - | chr7.4:93539954-93539973 | MS.gene54382:CDS | 35.0% |
| ! | TGAGCTTTTCCAATAAGTAG+AGG | + | chr7.4:93539734-93539753 | None:intergenic | 35.0% |
| ! | TGGTGTTAAGAGGATGATTA+TGG | - | chr7.4:93540490-93540509 | MS.gene54382:CDS | 35.0% |
| !! | AAGAGTTTCATGATGGGTTT+AGG | - | chr7.4:93540171-93540190 | MS.gene54382:intron | 35.0% |
| !! | AGAGTTTCATGATGGGTTTA+GGG | - | chr7.4:93540172-93540191 | MS.gene54382:intron | 35.0% |
| !! | TATGGGTTGGAGAAGATTAA+TGG | - | chr7.4:93540320-93540339 | MS.gene54382:intron | 35.0% |
| !! | TTTTGGAGATTGACCGTTAT+GGG | - | chr7.4:93540615-93540634 | MS.gene54382:CDS | 35.0% |
| !!! | CTTTTTGAAATCGGTCCATT+CGG | + | chr7.4:93540218-93540237 | None:intergenic | 35.0% |
| AAGAGAGGAGATTGGGAATT+TGG | + | chr7.4:93539446-93539465 | None:intergenic | 40.0% | |
| ATCGATGTTGGTATGTCGAA+AGG | - | chr7.4:93540569-93540588 | MS.gene54382:CDS | 40.0% | |
| ATTTCTTAAGGTCGCCATGA+AGG | + | chr7.4:93539593-93539612 | None:intergenic | 40.0% | |
| GATGAATGAAGAGAGGAGAT+TGG | + | chr7.4:93539454-93539473 | None:intergenic | 40.0% | |
| GGCAATTTCATCACCATGAA+TGG | - | chr7.4:93539777-93539796 | MS.gene54382:CDS | 40.0% | |
| GTTAGGGAAGAGTTTCATGA+TGG | - | chr7.4:93540164-93540183 | MS.gene54382:intron | 40.0% | |
| GTTGGAGAAGATTAATGGTG+AGG | - | chr7.4:93540325-93540344 | MS.gene54382:intron | 40.0% | |
| TCAATATCCTCACCCCATAA+CGG | + | chr7.4:93540631-93540650 | None:intergenic | 40.0% | |
| TCTGCGAAAATAAGGCGATT+AGG | - | chr7.4:93540546-93540565 | MS.gene54382:CDS | 40.0% | |
| TGGTTAGAATGGTTTCGTCA+AGG | - | chr7.4:93540059-93540078 | MS.gene54382:CDS | 40.0% | |
| TTTGGAGATTGACCGTTATG+GGG | - | chr7.4:93540616-93540635 | MS.gene54382:CDS | 40.0% | |
| ! | ATGTGTCGATGAATGAAGAG+AGG | + | chr7.4:93539461-93539480 | None:intergenic | 40.0% |
| ! | CGAATGGACCGATTTCAAAA+AGG | - | chr7.4:93540216-93540235 | MS.gene54382:intron | 40.0% |
| ! | GCCACGTGAACATTTTCTAA+TGG | + | chr7.4:93540134-93540153 | None:intergenic | 40.0% |
| !!! | CACCGTTTTTTGTAGCGAAA+CGG | + | chr7.4:93540022-93540041 | None:intergenic | 40.0% |
| !!! | GTTTTGGAGATTGACCGTTA+TGG | - | chr7.4:93540614-93540633 | MS.gene54382:CDS | 40.0% |
| AAATGTGGATGTTGGGAAGG+TGG | - | chr7.4:93540685-93540704 | MS.gene54382:CDS | 45.0% | |
| AAGGCGATTAGGATCGATGT+TGG | - | chr7.4:93540557-93540576 | MS.gene54382:CDS | 45.0% | |
| ACGGTCAATCTCCAAAACCT+CGG | + | chr7.4:93540612-93540631 | None:intergenic | 45.0% | |
| ATGTTGGGAAGGTGGAAGAA+GGG | - | chr7.4:93540693-93540712 | MS.gene54382:CDS | 45.0% | |
| GAAATTGCCACCATGAATCG+CGG | + | chr7.4:93539766-93539785 | None:intergenic | 45.0% | |
| GATCTCGTGGTTACCATTCA+TGG | + | chr7.4:93539793-93539812 | None:intergenic | 45.0% | |
| GGAAAATGTGGATGTTGGGA+AGG | - | chr7.4:93540682-93540701 | MS.gene54382:CDS | 45.0% | |
| GGCATACGATTCAGAAGGAA+GGG | - | chr7.4:93540513-93540532 | MS.gene54382:CDS | 45.0% | |
| GTTGGTATGTCGAAAGGATG+CGG | - | chr7.4:93540575-93540594 | MS.gene54382:CDS | 45.0% | |
| TATGGGGCATACGATTCAGA+AGG | - | chr7.4:93540508-93540527 | MS.gene54382:CDS | 45.0% | |
| ! | CATGTTTTGTCGACGATTCC+TGG | - | chr7.4:93540470-93540489 | MS.gene54382:CDS | 45.0% |
| !! | TCATGATGGGTTTAGGGCTA+GGG | - | chr7.4:93540178-93540197 | MS.gene54382:intron | 45.0% |
| !! | TTCATGATGGGTTTAGGGCT+AGG | - | chr7.4:93540177-93540196 | MS.gene54382:intron | 45.0% |
| !!! | TTTTGATTTCATCGCCTCCG+CGG | + | chr7.4:93539710-93539729 | None:intergenic | 45.0% |
| AAAGAAGCTCTTGGCATCGC+CGG | - | chr7.4:93539615-93539634 | MS.gene54382:CDS | 50.0% | |
| AATGTTCACGTGGCGTTTCG+TGG | - | chr7.4:93540140-93540159 | MS.gene54382:CDS | 50.0% | |
| ACCGGAGGAGTCGATTAATC+CGG | + | chr7.4:93539637-93539656 | None:intergenic | 50.0% | |
| ACCTAGGCAAGTGGAAGTCA+AGG | - | chr7.4:93540748-93540767 | MS.gene54382:CDS | 50.0% | |
| AGATGGTAGACCTAGGCAAG+TGG | - | chr7.4:93540739-93540758 | MS.gene54382:CDS | 50.0% | |
| AGATTGACCGTTATGGGGTG+AGG | - | chr7.4:93540621-93540640 | MS.gene54382:CDS | 50.0% | |
| CACGAGATCATGAACGCTGA+AGG | - | chr7.4:93539804-93539823 | MS.gene54382:CDS | 50.0% | |
| CGGTCAATCTCCAAAACCTC+GGG | + | chr7.4:93540611-93540630 | None:intergenic | 50.0% | |
| CTTCAGCGTTCATGATCTCG+TGG | + | chr7.4:93539806-93539825 | None:intergenic | 50.0% | |
| GACAATAAGGCGGCGAAAAC+CGG | + | chr7.4:93540382-93540401 | None:intergenic | 50.0% | |
| GACTCCTCCGGTAATTACAC+CGG | - | chr7.4:93539645-93539664 | MS.gene54382:CDS | 50.0% | |
| GATGTTGGGAAGGTGGAAGA+AGG | - | chr7.4:93540692-93540711 | MS.gene54382:CDS | 50.0% | |
| GCATTCCTTCCCCGACAATA+AGG | + | chr7.4:93540395-93540414 | None:intergenic | 50.0% | |
| GGGCATACGATTCAGAAGGA+AGG | - | chr7.4:93540512-93540531 | MS.gene54382:CDS | 50.0% | |
| GGGGAAGGAATGCACTTGTT+TGG | - | chr7.4:93540402-93540421 | MS.gene54382:CDS | 50.0% | |
| TTCCTTCCCCGACAATAAGG+CGG | + | chr7.4:93540392-93540411 | None:intergenic | 50.0% | |
| ! | CGACGATTCCTGGTGTTAAG+AGG | - | chr7.4:93540480-93540499 | MS.gene54382:CDS | 50.0% |
| ! | CGATTAAGCGTGACGGAGAA+GGG | + | chr7.4:93539560-93539579 | None:intergenic | 50.0% |
| !! | GGTTTTCGCCGCCTTATTGT+CGG | - | chr7.4:93540381-93540400 | MS.gene54382:CDS | 50.0% |
| !! | GTTTTCGCCGCCTTATTGTC+GGG | - | chr7.4:93540382-93540401 | MS.gene54382:CDS | 50.0% |
| !! | TTTGTCGACTTCTCCGTCAG+CGG | - | chr7.4:93539480-93539499 | MS.gene54382:CDS | 50.0% |
| !! | TTTTCGCCGCCTTATTGTCG+GGG | - | chr7.4:93540383-93540402 | MS.gene54382:CDS | 50.0% |
| AAACGCCAAGCCGCGATTCA+TGG | - | chr7.4:93539753-93539772 | MS.gene54382:CDS | 55.0% | |
| ACGTGGCGTTTCGTGGTGTT+AGG | - | chr7.4:93540147-93540166 | MS.gene54382:CDS | 55.0% | |
| AGACCCGCCGGTGTAATTAC+CGG | + | chr7.4:93539655-93539674 | None:intergenic | 55.0% | |
| ATCGCCATCGGTGACCTTCA+TGG | - | chr7.4:93539576-93539595 | MS.gene54382:CDS | 55.0% | |
| ATGTCGAAAGGATGCGGTGG+TGG | - | chr7.4:93540581-93540600 | MS.gene54382:CDS | 55.0% | |
| CCGATGGCGATTAAGCGTGA+CGG | + | chr7.4:93539567-93539586 | None:intergenic | 55.0% | |
| CCGTCACGCTTAATCGCCAT+CGG | - | chr7.4:93539564-93539583 | MS.gene54382:CDS | 55.0% | |
| GCCTTGACTTCCACTTGCCT+AGG | + | chr7.4:93540752-93540771 | None:intergenic | 55.0% | |
| GGCGATGCCAAGAGCTTCTT+TGG | + | chr7.4:93539616-93539635 | None:intergenic | 55.0% | |
| GGGAAGGTGGAAGAAGGGTT+TGG | - | chr7.4:93540698-93540717 | MS.gene54382:CDS | 55.0% | |
| GGTATGTCGAAAGGATGCGG+TGG | - | chr7.4:93540578-93540597 | MS.gene54382:CDS | 55.0% | |
| TCCTCCGGTAATTACACCGG+CGG | - | chr7.4:93539648-93539667 | MS.gene54382:CDS | 55.0% | |
| TCTGCCACCGTCGTTCAAGT+CGG | - | chr7.4:93539672-93539691 | MS.gene54382:CDS | 55.0% | |
| ! | CGTGGCGTTTCGTGGTGTTA+GGG | - | chr7.4:93540148-93540167 | MS.gene54382:CDS | 55.0% |
| ! | GCCGGATTAATCGACTCCTC+CGG | - | chr7.4:93539633-93539652 | MS.gene54382:CDS | 55.0% |
| ! | GCGATTAAGCGTGACGGAGA+AGG | + | chr7.4:93539561-93539580 | None:intergenic | 55.0% |
| ! | TGGGTTTAGGGCTAGGGTTG+CGG | - | chr7.4:93540184-93540203 | MS.gene54382:intron | 55.0% |
| ! | TTAAGCGTGACGGAGAAGGG+AGG | + | chr7.4:93539557-93539576 | None:intergenic | 55.0% |
| !! | ATTGGCGGTGGTGATGATGG+CGG | + | chr7.4:93539525-93539544 | None:intergenic | 55.0% |
| !! | GACATCGCCGACTTGAACGA+CGG | + | chr7.4:93539682-93539701 | None:intergenic | 55.0% |
| !! | GTTGCGGCTTTAAGGCCGAA+TGG | - | chr7.4:93540200-93540219 | MS.gene54382:intron | 55.0% |
| !! | TGGTGGTTTGCCCGAGGTTT+TGG | - | chr7.4:93540598-93540617 | MS.gene54382:CDS | 55.0% |
| CCTCCGGTAATTACACCGGC+GGG | - | chr7.4:93539649-93539668 | MS.gene54382:CDS | 60.0% | |
| GGGCTAGGGTTGCGGCTTTA+AGG | - | chr7.4:93540192-93540211 | MS.gene54382:intron | 60.0% | |
| GTCGCCATGAAGGTCACCGA+TGG | + | chr7.4:93539583-93539602 | None:intergenic | 60.0% | |
| TGCCACCATGAATCGCGGCT+TGG | + | chr7.4:93539761-93539780 | None:intergenic | 60.0% | |
| ! | ATGGCGGAGGTGGGAGGAAA+AGG | + | chr7.4:93539509-93539528 | None:intergenic | 60.0% |
| ! | GGGATTGGCGGTGGTGATGA+TGG | + | chr7.4:93539528-93539547 | None:intergenic | 60.0% |
| !! | ATCGCCGACTTGAACGACGG+TGG | + | chr7.4:93539679-93539698 | None:intergenic | 60.0% |
| !! | GTGGTGATGATGGCGGAGGT+GGG | + | chr7.4:93539518-93539537 | None:intergenic | 60.0% |
| ACGGAGAAGGGAGGCGAGTG+GGG | + | chr7.4:93539548-93539567 | None:intergenic | 65.0% | |
| CCCGCCGGTGTAATTACCGG+AGG | + | chr7.4:93539652-93539671 | None:intergenic | 65.0% | |
| CGCCAAGCCGCGATTCATGG+TGG | - | chr7.4:93539756-93539775 | MS.gene54382:CDS | 65.0% | |
| GAAGGGAGGCGAGTGGGGAT+TGG | + | chr7.4:93539543-93539562 | None:intergenic | 65.0% | |
| GACGGAGAAGGGAGGCGAGT+GGG | + | chr7.4:93539549-93539568 | None:intergenic | 65.0% | |
| GAGGAAAAGGCCGCCGCTGA+CGG | + | chr7.4:93539496-93539515 | None:intergenic | 65.0% | |
| TGACGGAGAAGGGAGGCGAG+TGG | + | chr7.4:93539550-93539569 | None:intergenic | 65.0% | |
| TTTCATCGCCTCCGCGGTCG+AGG | + | chr7.4:93539704-93539723 | None:intergenic | 65.0% | |
| ! | ATGCGGTGGTGGTTTGCCCG+AGG | - | chr7.4:93540592-93540611 | MS.gene54382:CDS | 65.0% |
| ! | CGCCGCCTTATTGTCGGGGA+AGG | - | chr7.4:93540387-93540406 | MS.gene54382:CDS | 65.0% |
| ! | GTCGACTTCTCCGTCAGCGG+CGG | - | chr7.4:93539483-93539502 | MS.gene54382:CDS | 65.0% |
| !! | GGTGGTGATGATGGCGGAGG+TGG | + | chr7.4:93539519-93539538 | None:intergenic | 65.0% |
| !! | GTGATGATGGCGGAGGTGGG+AGG | + | chr7.4:93539515-93539534 | None:intergenic | 65.0% |
| AACGACGGTGGCAGACCCGC+CGG | + | chr7.4:93539667-93539686 | None:intergenic | 70.0% | |
| GGGAGGCGAGTGGGGATTGG+CGG | + | chr7.4:93539540-93539559 | None:intergenic | 70.0% | |
| GTCGGCGATGTCCTCGACCG+CGG | - | chr7.4:93539690-93539709 | MS.gene54382:CDS | 70.0% | |
| ! | AGGCGAGTGGGGATTGGCGG+TGG | + | chr7.4:93539537-93539556 | None:intergenic | 70.0% |
| !! | GGCGGTGGTGATGATGGCGG+AGG | + | chr7.4:93539522-93539541 | None:intergenic | 70.0% |
| GGCGATGTCCTCGACCGCGG+AGG | - | chr7.4:93539693-93539712 | MS.gene54382:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93539405 | 93540775 | 93539405 | ID=MS.gene54382 |
| chr7.4 | mRNA | 93539405 | 93540775 | 93539405 | ID=MS.gene54382.t1;Parent=MS.gene54382 |
| chr7.4 | exon | 93540355 | 93540775 | 93540355 | ID=MS.gene54382.t1.exon1;Parent=MS.gene54382.t1 |
| chr7.4 | CDS | 93540355 | 93540775 | 93540355 | ID=cds.MS.gene54382.t1;Parent=MS.gene54382.t1 |
| chr7.4 | exon | 93539405 | 93540168 | 93539405 | ID=MS.gene54382.t1.exon2;Parent=MS.gene54382.t1 |
| chr7.4 | CDS | 93539405 | 93540168 | 93539405 | ID=cds.MS.gene54382.t1;Parent=MS.gene54382.t1 |
| Gene Sequence |
| Protein sequence |
