Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55062.t1 | XP_013449411.1 | 97.2 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 2.80E-50 | 208 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55062.t1 | Q8VY08 | 74.5 | 102 | 17 | 2 | 5 | 106 | 1 | 93 | 3.5e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55062.t1 | A0A072U217 | 97.2 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 2.0e-50 | 208.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene55062 | 0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene050085 | MS.gene55062 | 0.814079 | 1.85E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene55062 | 0.840583 | 7.97E-58 | -1.69E-46 |
| MS.gene050317 | MS.gene55062 | 0.81703 | 4.07E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene55062 | 0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene051748 | MS.gene55062 | 0.811756 | 5.97E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene55062 | -0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene55062 | 0.828376 | 9.31E-55 | -1.69E-46 |
| MS.gene052527 | MS.gene55062 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene55062 | 0.823476 | 1.36E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene55062 | 0.811267 | 7.62E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene55062 | 0.825251 | 5.19E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene55062 | 0.823688 | 1.21E-53 | -1.69E-46 |
| MS.gene056752 | MS.gene55062 | 0.814756 | 1.31E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene55062 | 0.820218 | 7.70E-53 | -1.69E-46 |
| MS.gene057452 | MS.gene55062 | -0.829312 | 5.52E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene55062 | 0.834273 | 3.30E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene55062 | 0.817734 | 2.83E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene55062 | 0.80098 | 1.12E-48 | -1.69E-46 |
| MS.gene058639 | MS.gene55062 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene55062 | 0.809498 | 1.84E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene55062 | 0.802426 | 5.64E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene55062 | 0.811345 | 7.33E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene55062 | 0.813816 | 2.11E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene55062 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene55062 | 0.814515 | 1.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55062.t1 | MTR_7g081715 | 97.196 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 1.64e-71 | 216 |
| MS.gene55062.t1 | MTR_7g081715 | 97.196 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 3.13e-71 | 216 |
| MS.gene55062.t1 | MTR_7g081715 | 97.196 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 3.22e-71 | 216 |
| MS.gene55062.t1 | MTR_7g081715 | 97.196 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 3.32e-71 | 216 |
| MS.gene55062.t1 | MTR_7g081715 | 97.196 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 8.25e-71 | 215 |
| MS.gene55062.t1 | MTR_7g081715 | 97.196 | 107 | 3 | 0 | 1 | 107 | 1 | 107 | 1.12e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55062.t1 | AT1G02100 | 74.510 | 102 | 17 | 2 | 5 | 106 | 1 | 93 | 6.32e-45 | 149 |
| MS.gene55062.t1 | AT1G02100 | 74.510 | 102 | 17 | 2 | 5 | 106 | 1 | 93 | 1.08e-44 | 149 |
| MS.gene55062.t1 | AT1G02100 | 74.510 | 102 | 17 | 2 | 5 | 106 | 1 | 93 | 1.08e-44 | 149 |
Find 27 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGTATCTGCGTCTTTAT+TGG | 0.202675 | 7.3:-25762699 | None:intergenic |
| ATTTAGATTATCAAATGTTT+TGG | 0.284445 | 7.3:+25763074 | MS.gene55062:CDS |
| TTGTAGGTCATGTGTGAAAA+AGG | 0.332658 | 7.3:+25762431 | MS.gene55062:intron |
| ATAGTATCTGCGTCTTTATT+GGG | 0.334293 | 7.3:-25762698 | None:intergenic |
| ATAATCGGAGATCTTCTTAC+AGG | 0.352376 | 7.3:-25762495 | None:intergenic |
| GAAACTGGTAGAGAAATTTC+CGG | 0.393824 | 7.3:-25762644 | None:intergenic |
| TGAAGGTTACTTTGCTCGTT+GGG | 0.405577 | 7.3:+25762614 | MS.gene55062:intron |
| CGTGCGAGCGTACAATTTAC+TGG | 0.413604 | 7.3:-25761326 | None:intergenic |
| ATCTTACCACGATTAATAAT+CGG | 0.432639 | 7.3:-25762510 | None:intergenic |
| GGCGGAAGCGTCGTCGTTGG+TGG | 0.461549 | 7.3:-25761305 | None:intergenic |
| ATGAAGGTTACTTTGCTCGT+TGG | 0.462272 | 7.3:+25762613 | MS.gene55062:intron |
| ACTGTTGTCGATGCGTGAAT+CGG | 0.479296 | 7.3:-25761263 | None:intergenic |
| TTGCTCGTTGGGCTGCCCTC+CGG | 0.486240 | 7.3:+25762625 | MS.gene55062:CDS |
| GAAACTAAGTTCTCATGTCA+TGG | 0.494698 | 7.3:+25763096 | MS.gene55062:CDS |
| ATTTGATAATCTAAATCTCT+AGG | 0.512401 | 7.3:-25763067 | None:intergenic |
| ACATTCATTTATTTGTGAGA+AGG | 0.526997 | 7.3:+25762472 | MS.gene55062:CDS |
| ACTGGCGGAAGCGTCGTCGT+TGG | 0.577080 | 7.3:-25761308 | None:intergenic |
| CAGATACTATCACTTGGAGC+AGG | 0.588756 | 7.3:+25762711 | MS.gene55062:CDS |
| TTCAACCATGGCGGATACAG+TGG | 0.595052 | 7.3:+25761240 | None:intergenic |
| ATCGGCCACTGTATCCGCCA+TGG | 0.603474 | 7.3:-25761245 | None:intergenic |
| AAGACGCAGATACTATCACT+TGG | 0.623489 | 7.3:+25762705 | MS.gene55062:CDS |
| AGATCTCCGATTATTAATCG+TGG | 0.658165 | 7.3:+25762504 | MS.gene55062:CDS |
| CTGGTAGAGAAATTTCCGGA+GGG | 0.686441 | 7.3:-25762640 | None:intergenic |
| ACTGGTAGAGAAATTTCCGG+AGG | 0.699047 | 7.3:-25762641 | None:intergenic |
| CGACAACAGTAACACTGCGG+CGG | 0.708713 | 7.3:+25761276 | MS.gene55062:CDS |
| GCGAGCGTACAATTTACTGG+CGG | 0.759993 | 7.3:-25761323 | None:intergenic |
| CATCGACAACAGTAACACTG+CGG | 0.817282 | 7.3:+25761273 | MS.gene55062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATATGTTTTTATTGTA+AGG | - | chr7.3:25761914-25761933 | None:intergenic | 15.0% |
| !!! | ATTTAGATTATCAAATGTTT+TGG | + | chr7.3:25763074-25763093 | MS.gene55062:CDS | 15.0% |
| !!! | TAGATTTTATTCTTATATGA+TGG | + | chr7.3:25762386-25762405 | MS.gene55062:intron | 15.0% |
| !!! | TTAAGTACTAAAAGTATTTT+TGG | - | chr7.3:25762157-25762176 | None:intergenic | 15.0% |
| !! | AAAAATTTCAGTGATTTAAG+GGG | - | chr7.3:25761556-25761575 | None:intergenic | 20.0% |
| !! | AAACAATTGAAAAGATGTTA+TGG | + | chr7.3:25762090-25762109 | MS.gene55062:intron | 20.0% |
| !! | AAATCTATAATTCATACAAG+AGG | - | chr7.3:25762373-25762392 | None:intergenic | 20.0% |
| !! | ATTCAACATTAAAAGAACTT+TGG | + | chr7.3:25762205-25762224 | MS.gene55062:intron | 20.0% |
| !! | CAAAAATTTCAGTGATTTAA+GGG | - | chr7.3:25761557-25761576 | None:intergenic | 20.0% |
| !! | TAGTACTTAATGATATAGAT+TGG | + | chr7.3:25762167-25762186 | MS.gene55062:intron | 20.0% |
| !! | TTGAATATATTCACATGTAT+CGG | + | chr7.3:25761996-25762015 | MS.gene55062:intron | 20.0% |
| !!! | ACTATAATTTCCTCTTATTT+TGG | + | chr7.3:25762824-25762843 | MS.gene55062:intron | 20.0% |
| !!! | ATTTGATAATCTAAATCTCT+AGG | - | chr7.3:25763070-25763089 | None:intergenic | 20.0% |
| !!! | ATTTTCATTTTTGTTGCATT+TGG | + | chr7.3:25761444-25761463 | MS.gene55062:intron | 20.0% |
| !!! | ATTTTTTCTTTCATCTTTGT+TGG | + | chr7.3:25762960-25762979 | MS.gene55062:intron | 20.0% |
| ! | AAAACCAATGTTCAATTACA+TGG | - | chr7.3:25762315-25762334 | None:intergenic | 25.0% |
| ! | ACATTCATTTATTTGTGAGA+AGG | + | chr7.3:25762472-25762491 | MS.gene55062:CDS | 25.0% |
| ! | AGTGATTGATTGATCAATAA+AGG | - | chr7.3:25761363-25761382 | None:intergenic | 25.0% |
| ! | ATCTTACCACGATTAATAAT+CGG | - | chr7.3:25762513-25762532 | None:intergenic | 25.0% |
| ! | CCAAAAATTTCAGTGATTTA+AGG | - | chr7.3:25761558-25761577 | None:intergenic | 25.0% |
| ! | CTATAATTGTTTGAGTATGA+AGG | + | chr7.3:25762597-25762616 | MS.gene55062:intron | 25.0% |
| ! | GAGAAAAAGAACAATGAAAA+TGG | + | chr7.3:25762675-25762694 | MS.gene55062:CDS | 25.0% |
| !! | CCTTAAATCACTGAAATTTT+TGG | + | chr7.3:25761555-25761574 | MS.gene55062:intron | 25.0% |
| !! | TTTTTATTGTAAGGTGTGTT+TGG | - | chr7.3:25761905-25761924 | None:intergenic | 25.0% |
| !!! | AGTGCAATTTGTTTTATAAC+AGG | + | chr7.3:25762927-25762946 | MS.gene55062:intron | 25.0% |
| !!! | GTACTAAAAGTATTTTTGGA+TGG | - | chr7.3:25762153-25762172 | None:intergenic | 25.0% |
| !!! | TTAACAAGCAACTTGTTTTA+CGG | - | chr7.3:25762574-25762593 | None:intergenic | 25.0% |
| AAACACACCCTTAATGTATT+TGG | - | chr7.3:25761659-25761678 | None:intergenic | 30.0% | |
| AACACACCCTTAATGTATTT+GGG | - | chr7.3:25761658-25761677 | None:intergenic | 30.0% | |
| AGATACTGATGCAAAATCTT+TGG | - | chr7.3:25762895-25762914 | None:intergenic | 30.0% | |
| ATACTGATGCAAAATCTTTG+GGG | - | chr7.3:25762893-25762912 | None:intergenic | 30.0% | |
| ATAGTATCTGCGTCTTTATT+GGG | - | chr7.3:25762701-25762720 | None:intergenic | 30.0% | |
| CATTCCATGTAATTGAACAT+TGG | + | chr7.3:25762308-25762327 | MS.gene55062:intron | 30.0% | |
| GAACATGATATTGTGACATT+AGG | + | chr7.3:25761508-25761527 | MS.gene55062:intron | 30.0% | |
| GATACTGATGCAAAATCTTT+GGG | - | chr7.3:25762894-25762913 | None:intergenic | 30.0% | |
| GATTGATCAATAAAGGAGAA+AGG | - | chr7.3:25761356-25761375 | None:intergenic | 30.0% | |
| TAAAGAGAGTAAGATTGTGA+AGG | - | chr7.3:25763010-25763029 | None:intergenic | 30.0% | |
| TGAAAAGATGTTATGGACTT+TGG | + | chr7.3:25762097-25762116 | MS.gene55062:intron | 30.0% | |
| TGGTTATCTCAAATGGAAAA+CGG | + | chr7.3:25762121-25762140 | MS.gene55062:intron | 30.0% | |
| ! | AAATACATTAAGGGTGTGTT+TGG | + | chr7.3:25761658-25761677 | MS.gene55062:intron | 30.0% |
| ! | AAGATTTTGCATCAGTATCT+TGG | + | chr7.3:25762895-25762914 | MS.gene55062:intron | 30.0% |
| ! | GAAAATCTGAAATAGCTTTG+CGG | - | chr7.3:25761430-25761449 | None:intergenic | 30.0% |
| ! | TACAACATATTTTCAGTTGC+AGG | + | chr7.3:25762740-25762759 | MS.gene55062:CDS | 30.0% |
| ! | TCCTTTTCTCAAATAACTAC+CGG | - | chr7.3:25761971-25761990 | None:intergenic | 30.0% |
| ! | TTTTCTCAACATCAAGAAAC+TGG | - | chr7.3:25762662-25762681 | None:intergenic | 30.0% |
| !! | AACATATGATTTCTGAAGCA+TGG | + | chr7.3:25761923-25761942 | MS.gene55062:intron | 30.0% |
| !!! | TAACAAGCAACTTGTTTTAC+GGG | - | chr7.3:25762573-25762592 | None:intergenic | 30.0% |
| ACACACCCTTAATGTATTTG+GGG | - | chr7.3:25761657-25761676 | None:intergenic | 35.0% | |
| ACCGGTAGTTATTTGAGAAA+AGG | + | chr7.3:25761967-25761986 | MS.gene55062:intron | 35.0% | |
| AGAACTTTGGTCCATAATAG+TGG | + | chr7.3:25762218-25762237 | MS.gene55062:intron | 35.0% | |
| AGATCTCCGATTATTAATCG+TGG | + | chr7.3:25762504-25762523 | MS.gene55062:CDS | 35.0% | |
| AGGAAAAACTACAACCAGAA+AGG | - | chr7.3:25762353-25762372 | None:intergenic | 35.0% | |
| ATAATCGGAGATCTTCTTAC+AGG | - | chr7.3:25762498-25762517 | None:intergenic | 35.0% | |
| ATGATGTTCTTCTTCCTTTC+TGG | + | chr7.3:25762336-25762355 | MS.gene55062:intron | 35.0% | |
| CCTAAATCAGTCCACTATTA+TGG | - | chr7.3:25762232-25762251 | None:intergenic | 35.0% | |
| CGAAACCCCAAATACATTAA+GGG | + | chr7.3:25761649-25761668 | MS.gene55062:intron | 35.0% | |
| GAAACTAAGTTCTCATGTCA+TGG | + | chr7.3:25763096-25763115 | MS.gene55062:CDS | 35.0% | |
| GAAACTGGTAGAGAAATTTC+CGG | - | chr7.3:25762647-25762666 | None:intergenic | 35.0% | |
| GATAGTATCTGCGTCTTTAT+TGG | - | chr7.3:25762702-25762721 | None:intergenic | 35.0% | |
| GGTTATCTCAAATGGAAAAC+GGG | + | chr7.3:25762122-25762141 | MS.gene55062:intron | 35.0% | |
| TATCCATCTATTCCGTGTAT+TGG | + | chr7.3:25762254-25762273 | MS.gene55062:intron | 35.0% | |
| TATTGTAAGGTGTGTTTGGA+TGG | - | chr7.3:25761901-25761920 | None:intergenic | 35.0% | |
| TCGAAACCCCAAATACATTA+AGG | + | chr7.3:25761648-25761667 | MS.gene55062:intron | 35.0% | |
| TGTAGGTCATGTGTGAAAAA+GGG | + | chr7.3:25762432-25762451 | MS.gene55062:intron | 35.0% | |
| TTGTAGGTCATGTGTGAAAA+AGG | + | chr7.3:25762431-25762450 | MS.gene55062:intron | 35.0% | |
| ! | GGTAAGATTTAGCTGTCTTT+TGG | + | chr7.3:25762525-25762544 | MS.gene55062:intron | 35.0% |
| !! | CCATAATAGTGGACTGATTT+AGG | + | chr7.3:25762229-25762248 | MS.gene55062:intron | 35.0% |
| !!! | TCACTGAAATTTTTGGCCAA+TGG | + | chr7.3:25761562-25761581 | MS.gene55062:intron | 35.0% |
| AAGACGCAGATACTATCACT+TGG | + | chr7.3:25762705-25762724 | MS.gene55062:CDS | 40.0% | |
| AAGATGTTATGGACTTTGGC+TGG | + | chr7.3:25762101-25762120 | MS.gene55062:intron | 40.0% | |
| ACGTGTTCGATCAGAAATGT+CGG | + | chr7.3:25762046-25762065 | MS.gene55062:intron | 40.0% | |
| ATGACCTACAACCAGTTCAT+GGG | - | chr7.3:25762422-25762441 | None:intergenic | 40.0% | |
| CATCTATTCCGTGTATTGGA+AGG | + | chr7.3:25762258-25762277 | MS.gene55062:intron | 40.0% | |
| CTTCCAATACACGGAATAGA+TGG | - | chr7.3:25762260-25762279 | None:intergenic | 40.0% | |
| GTAGGTCATGTGTGAAAAAG+GGG | + | chr7.3:25762433-25762452 | MS.gene55062:intron | 40.0% | |
| GTGATAGACCTTCCAATACA+CGG | - | chr7.3:25762269-25762288 | None:intergenic | 40.0% | |
| TCGTGTCAAATGTCAGACAT+TGG | + | chr7.3:25762021-25762040 | MS.gene55062:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr7.3:25761672-25761691 | MS.gene55062:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+CGG | + | chr7.3:25761676-25761695 | MS.gene55062:intron | 40.0% | |
| ! | ATGAAGGTTACTTTGCTCGT+TGG | + | chr7.3:25762613-25762632 | MS.gene55062:intron | 40.0% |
| ! | CTTTGGCTGGTTATCTCAAA+TGG | + | chr7.3:25762114-25762133 | MS.gene55062:intron | 40.0% |
| ! | GAAATTTGCTTCCCATGAAC+TGG | + | chr7.3:25762408-25762427 | MS.gene55062:intron | 40.0% |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | + | chr7.3:25761666-25761685 | MS.gene55062:intron | 40.0% |
| ! | TGAAGGTTACTTTGCTCGTT+GGG | + | chr7.3:25762614-25762633 | MS.gene55062:intron | 40.0% |
| ! | TTAAGGGTGTGTTTGGATTG+AGG | + | chr7.3:25761665-25761684 | MS.gene55062:intron | 40.0% |
| !!! | GAAATTTTTGGCCAATGGAC+TGG | + | chr7.3:25761567-25761586 | MS.gene55062:intron | 40.0% |
| ACTGGTAGAGAAATTTCCGG+AGG | - | chr7.3:25762644-25762663 | None:intergenic | 45.0% | |
| ACTGTTGTCGATGCGTGAAT+CGG | - | chr7.3:25761266-25761285 | None:intergenic | 45.0% | |
| CAGATACTATCACTTGGAGC+AGG | + | chr7.3:25762711-25762730 | MS.gene55062:CDS | 45.0% | |
| CATCGACAACAGTAACACTG+CGG | + | chr7.3:25761273-25761292 | MS.gene55062:CDS | 45.0% | |
| CATGACCTACAACCAGTTCA+TGG | - | chr7.3:25762423-25762442 | None:intergenic | 45.0% | |
| CTGGTAGAGAAATTTCCGGA+GGG | - | chr7.3:25762643-25762662 | None:intergenic | 45.0% | |
| GCACAGCATAACTCAAACTC+AGG | - | chr7.3:25762768-25762787 | None:intergenic | 45.0% | |
| GTAAGGTGTGTTTGGATGGA+GGG | - | chr7.3:25761897-25761916 | None:intergenic | 45.0% | |
| TCTCCATTTCTCCAGTCCAT+TGG | - | chr7.3:25761581-25761600 | None:intergenic | 45.0% | |
| TGTAAGGTGTGTTTGGATGG+AGG | - | chr7.3:25761898-25761917 | None:intergenic | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr7.3:25761891-25761910 | None:intergenic | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr7.3:25761887-25761906 | None:intergenic | 45.0% | |
| ! | TTGGATTGAGGGTTTAGGAC+GGG | + | chr7.3:25761677-25761696 | MS.gene55062:intron | 45.0% |
| !!! | CCTCTTATTTTGGAGCTGTG+CGG | + | chr7.3:25762834-25762853 | MS.gene55062:intron | 45.0% |
| !!! | CTCTTATTTTGGAGCTGTGC+GGG | + | chr7.3:25762835-25762854 | MS.gene55062:intron | 45.0% |
| CAACACTGACACATCGACAC+CGG | + | chr7.3:25761949-25761968 | MS.gene55062:intron | 50.0% | |
| CCGCACAGCTCCAAAATAAG+AGG | - | chr7.3:25762837-25762856 | None:intergenic | 50.0% | |
| CGTGCGAGCGTACAATTTAC+TGG | - | chr7.3:25761329-25761348 | None:intergenic | 50.0% | |
| GCGAGCGTACAATTTACTGG+CGG | - | chr7.3:25761326-25761345 | None:intergenic | 50.0% | |
| GCTTCCCATGAACTGGTTGT+AGG | + | chr7.3:25762415-25762434 | MS.gene55062:intron | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr7.3:25761888-25761907 | None:intergenic | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr7.3:25761886-25761905 | None:intergenic | 50.0% | |
| ! | TGGACTGGAGAAATGGAGAC+AGG | + | chr7.3:25761582-25761601 | MS.gene55062:intron | 50.0% |
| ! | TTGAGGGTTTAGGACGGGAA+TGG | + | chr7.3:25761682-25761701 | MS.gene55062:intron | 50.0% |
| !! | TGGCCAATGGACTGGAGAAA+TGG | + | chr7.3:25761575-25761594 | MS.gene55062:intron | 50.0% |
| ATGGAGGGTTTAGGAGGGGA+AGG | - | chr7.3:25761882-25761901 | None:intergenic | 55.0% | |
| CGACAACAGTAACACTGCGG+CGG | + | chr7.3:25761276-25761295 | MS.gene55062:CDS | 55.0% | |
| GGTTTAGGAGGGGAAGGGAA+GGG | - | chr7.3:25761876-25761895 | None:intergenic | 55.0% | |
| GTGCGGGTCAAGTGAAGGTT+TGG | + | chr7.3:25762851-25762870 | MS.gene55062:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | - | chr7.3:25761881-25761900 | None:intergenic | 55.0% | |
| ! | AGGGTTTAGGACGGGAATGG+AGG | + | chr7.3:25761685-25761704 | MS.gene55062:intron | 55.0% |
| ! | GGGTTTAGGACGGGAATGGA+GGG | + | chr7.3:25761686-25761705 | MS.gene55062:intron | 55.0% |
| ! | GGTTTAGGACGGGAATGGAG+GGG | + | chr7.3:25761687-25761706 | MS.gene55062:intron | 55.0% |
| GAGCTGTGCGGGTCAAGTGA+AGG | + | chr7.3:25762846-25762865 | MS.gene55062:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+AGG | - | chr7.3:25761877-25761896 | None:intergenic | 60.0% | |
| TAGGACGGGAATGGAGGGGA+GGG | + | chr7.3:25761691-25761710 | MS.gene55062:intron | 60.0% | |
| TTAGGACGGGAATGGAGGGG+AGG | + | chr7.3:25761690-25761709 | MS.gene55062:intron | 60.0% | |
| TTGCTCGTTGGGCTGCCCTC+CGG | + | chr7.3:25762625-25762644 | MS.gene55062:CDS | 65.0% | |
| !! | ACTGGCGGAAGCGTCGTCGT+TGG | - | chr7.3:25761311-25761330 | None:intergenic | 65.0% |
| !! | GGCGGAAGCGTCGTCGTTGG+TGG | - | chr7.3:25761308-25761327 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 25761247 | 25763129 | 25761247 | ID=MS.gene55062 |
| chr7.3 | mRNA | 25761247 | 25763129 | 25761247 | ID=MS.gene55062.t1;Parent=MS.gene55062 |
| chr7.3 | exon | 25761247 | 25761335 | 25761247 | ID=MS.gene55062.t1.exon1;Parent=MS.gene55062.t1 |
| chr7.3 | CDS | 25761247 | 25761335 | 25761247 | ID=cds.MS.gene55062.t1;Parent=MS.gene55062.t1 |
| chr7.3 | exon | 25762437 | 25762525 | 25762437 | ID=MS.gene55062.t1.exon2;Parent=MS.gene55062.t1 |
| chr7.3 | CDS | 25762437 | 25762525 | 25762437 | ID=cds.MS.gene55062.t1;Parent=MS.gene55062.t1 |
| chr7.3 | exon | 25762619 | 25762761 | 25762619 | ID=MS.gene55062.t1.exon3;Parent=MS.gene55062.t1 |
| chr7.3 | CDS | 25762619 | 25762761 | 25762619 | ID=cds.MS.gene55062.t1;Parent=MS.gene55062.t1 |
| chr7.3 | exon | 25763031 | 25763129 | 25763031 | ID=MS.gene55062.t1.exon4;Parent=MS.gene55062.t1 |
| chr7.3 | CDS | 25763031 | 25763129 | 25763031 | ID=cds.MS.gene55062.t1;Parent=MS.gene55062.t1 |
| Gene Sequence |
| Protein sequence |
