Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55719.t1 | XP_013447073.1 | 97.2 | 573 | 16 | 0 | 1 | 573 | 1 | 573 | 0.00E+00 | 1138.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55719.t1 | Q570C0 | 55.9 | 567 | 241 | 2 | 9 | 570 | 11 | 573 | 2.2e-182 | 640.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55719.t1 | A0A072U5G2 | 97.2 | 573 | 16 | 0 | 1 | 573 | 1 | 573 | 0.0e+00 | 1138.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene55719 | 0.802096 | 6.60E-49 | -1.69E-46 |
MS.gene049328 | MS.gene55719 | 0.819132 | 1.36E-52 | -1.69E-46 |
MS.gene049418 | MS.gene55719 | 0.81336 | 2.66E-51 | -1.69E-46 |
MS.gene049824 | MS.gene55719 | 0.800852 | 1.19E-48 | -1.69E-46 |
MS.gene050877 | MS.gene55719 | 0.807348 | 5.28E-50 | -1.69E-46 |
MS.gene05157 | MS.gene55719 | 0.822073 | 2.88E-53 | -1.69E-46 |
MS.gene051648 | MS.gene55719 | 0.805845 | 1.10E-49 | -1.69E-46 |
MS.gene051720 | MS.gene55719 | 0.812346 | 4.44E-51 | -1.69E-46 |
MS.gene052732 | MS.gene55719 | 0.81369 | 2.25E-51 | -1.69E-46 |
MS.gene053122 | MS.gene55719 | 0.846094 | 2.69E-59 | -1.69E-46 |
MS.gene053144 | MS.gene55719 | 0.833988 | 3.89E-56 | -1.69E-46 |
MS.gene053226 | MS.gene55719 | 0.800859 | 1.18E-48 | -1.69E-46 |
MS.gene054550 | MS.gene55719 | 0.807225 | 5.61E-50 | -1.69E-46 |
MS.gene054584 | MS.gene55719 | 0.83387 | 4.16E-56 | -1.69E-46 |
MS.gene055465 | MS.gene55719 | 0.809878 | 1.52E-50 | -1.69E-46 |
MS.gene055537 | MS.gene55719 | 0.825203 | 5.33E-54 | -1.69E-46 |
MS.gene055580 | MS.gene55719 | -0.826777 | 2.25E-54 | -1.69E-46 |
MS.gene055764 | MS.gene55719 | 0.812193 | 4.80E-51 | -1.69E-46 |
MS.gene055890 | MS.gene55719 | 0.814388 | 1.58E-51 | -1.69E-46 |
MS.gene055891 | MS.gene55719 | 0.817895 | 2.60E-52 | -1.69E-46 |
MS.gene056005 | MS.gene55719 | 0.816465 | 5.45E-52 | -1.69E-46 |
MS.gene056043 | MS.gene55719 | -0.811077 | 8.38E-51 | -1.69E-46 |
MS.gene056308 | MS.gene55719 | 0.814316 | 1.64E-51 | -1.69E-46 |
MS.gene05894 | MS.gene55719 | 0.830119 | 3.51E-55 | -1.69E-46 |
MS.gene060587 | MS.gene55719 | 0.812435 | 4.25E-51 | -1.69E-46 |
MS.gene060603 | MS.gene55719 | 0.833521 | 5.09E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55719.t1 | MTR_8g098695 | 97.208 | 573 | 16 | 0 | 1 | 573 | 1 | 573 | 0.0 | 1155 |
MS.gene55719.t1 | MTR_4g091290 | 83.390 | 590 | 77 | 3 | 1 | 573 | 3 | 588 | 0.0 | 1009 |
MS.gene55719.t1 | MTR_7g083610 | 55.846 | 573 | 238 | 5 | 9 | 573 | 6 | 571 | 0.0 | 642 |
MS.gene55719.t1 | MTR_1g088950 | 53.158 | 570 | 258 | 2 | 9 | 573 | 16 | 581 | 0.0 | 638 |
MS.gene55719.t1 | MTR_5g065490 | 49.825 | 572 | 272 | 6 | 9 | 573 | 53 | 616 | 0.0 | 546 |
MS.gene55719.t1 | MTR_3g100860 | 49.477 | 574 | 274 | 6 | 11 | 573 | 25 | 593 | 0.0 | 545 |
MS.gene55719.t1 | MTR_5g081870 | 32.657 | 591 | 357 | 15 | 6 | 573 | 10 | 582 | 1.18e-93 | 299 |
MS.gene55719.t1 | MTR_3g070140 | 30.252 | 595 | 373 | 11 | 6 | 573 | 14 | 593 | 2.00e-79 | 261 |
MS.gene55719.t1 | MTR_5g086490 | 44.355 | 124 | 54 | 1 | 9 | 132 | 6 | 114 | 1.53e-26 | 104 |
MS.gene55719.t1 | MTR_2g021030 | 23.506 | 502 | 287 | 14 | 9 | 493 | 13 | 434 | 2.83e-23 | 103 |
MS.gene55719.t1 | MTR_2g021030 | 22.344 | 546 | 326 | 14 | 9 | 536 | 13 | 478 | 4.34e-23 | 103 |
MS.gene55719.t1 | MTR_7g112570 | 22.871 | 599 | 362 | 21 | 9 | 535 | 51 | 621 | 3.10e-14 | 76.3 |
MS.gene55719.t1 | MTR_7g112570 | 22.662 | 556 | 331 | 20 | 9 | 493 | 51 | 578 | 1.50e-13 | 73.9 |
MS.gene55719.t1 | MTR_7g112570 | 22.662 | 556 | 331 | 20 | 9 | 493 | 51 | 578 | 2.71e-13 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55719.t1 | AT3G62980 | 55.614 | 570 | 244 | 2 | 9 | 573 | 11 | 576 | 0.0 | 631 |
MS.gene55719.t1 | AT1G12820 | 52.405 | 582 | 250 | 5 | 9 | 573 | 6 | 577 | 0.0 | 622 |
MS.gene55719.t1 | AT3G26810 | 53.913 | 575 | 250 | 5 | 9 | 573 | 6 | 575 | 0.0 | 620 |
MS.gene55719.t1 | AT4G03190 | 53.147 | 572 | 260 | 3 | 6 | 573 | 4 | 571 | 0.0 | 614 |
MS.gene55719.t1 | AT4G24390 | 50.261 | 575 | 269 | 6 | 9 | 573 | 56 | 623 | 0.0 | 566 |
MS.gene55719.t1 | AT4G24390 | 50.261 | 575 | 269 | 6 | 9 | 573 | 56 | 623 | 0.0 | 566 |
MS.gene55719.t1 | AT5G49980 | 49.385 | 569 | 279 | 5 | 9 | 573 | 56 | 619 | 0.0 | 551 |
MS.gene55719.t1 | AT2G39940 | 31.472 | 591 | 369 | 12 | 4 | 573 | 13 | 588 | 3.72e-98 | 310 |
MS.gene55719.t1 | AT4G15475 | 22.263 | 548 | 340 | 19 | 9 | 493 | 13 | 537 | 5.80e-21 | 97.4 |
MS.gene55719.t1 | AT5G25350 | 27.119 | 236 | 128 | 10 | 315 | 519 | 166 | 388 | 1.11e-11 | 68.2 |
Find 113 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAATGATGTAAAGCTTTC+TGG | 0.104076 | 4.2:-5992538 | None:intergenic |
TTCACACCCTTTCTGGTTTA+TGG | 0.116366 | 4.2:+5992800 | MS.gene55719:CDS |
TCAACTTGGTTCCTGAAAAT+TGG | 0.125267 | 4.2:+5991393 | MS.gene55719:CDS |
AAGAGTATTCACACCCTTTC+TGG | 0.148691 | 4.2:+5992793 | MS.gene55719:CDS |
CTCCAAAGGCTTTCTGTATC+AGG | 0.215148 | 4.2:+5993414 | MS.gene55719:CDS |
CAACTTGGTTCCTGAAAATT+GGG | 0.247042 | 4.2:+5991394 | MS.gene55719:CDS |
GTTGAATGTTGAAGTAATTA+AGG | 0.252910 | 4.2:+5993710 | MS.gene55719:CDS |
TCACACCCTTTCTGGTTTAT+GGG | 0.255188 | 4.2:+5992801 | MS.gene55719:CDS |
GTCCTGACTTCACTCATTTC+CGG | 0.263095 | 4.2:+5993301 | MS.gene55719:CDS |
CGATATTTACATCATTGTTT+AGG | 0.287424 | 4.2:-5992579 | None:intergenic |
GTCCTAATCTTCGACGCCTT+TGG | 0.294619 | 4.2:+5992950 | MS.gene55719:CDS |
TATGTTTATCGTTCTGTTGC+CGG | 0.306416 | 4.2:+5993768 | MS.gene55719:CDS |
AGTGTAACACTTCTTATGTT+TGG | 0.320668 | 4.2:-5991344 | None:intergenic |
TCCTAATCTTCGACGCCTTT+GGG | 0.326628 | 4.2:+5992951 | MS.gene55719:CDS |
GTCAGGTAATCTGGCTGATT+AGG | 0.330799 | 4.2:-5993339 | None:intergenic |
CCCAGAAAGCTTTACATCAT+TGG | 0.331548 | 4.2:+5992537 | MS.gene55719:CDS |
AATGGAGGGGCATCCCTTCT+TGG | 0.338658 | 4.2:-5993792 | None:intergenic |
TCAGGTAATCTGGCTGATTA+GGG | 0.351214 | 4.2:-5993338 | None:intergenic |
TAAATCTTACTTGCAATTAG+TGG | 0.351338 | 4.2:-5991603 | None:intergenic |
GAAGTGTTGAAACAAGTTCT+TGG | 0.355603 | 4.2:+5991182 | MS.gene55719:CDS |
TTGACGAGGGCGTTGTGCAC+GGG | 0.358953 | 4.2:+5993166 | MS.gene55719:CDS |
CCAATGATGTAAAGCTTTCT+GGG | 0.365785 | 4.2:-5992537 | None:intergenic |
GGTTCATTCGTCAGGTAATC+TGG | 0.379909 | 4.2:-5993348 | None:intergenic |
GTGCACGGGGTTACTGAATC+AGG | 0.384151 | 4.2:+5993180 | MS.gene55719:CDS |
GGGATGCAGTCTGTACTTGC+TGG | 0.384929 | 4.2:+5993528 | MS.gene55719:CDS |
ACCTCGCATTTGAGTATATA+GGG | 0.389051 | 4.2:+5993448 | MS.gene55719:CDS |
GAACCTATGGATGAGGCCTT+TGG | 0.395697 | 4.2:+5993366 | MS.gene55719:CDS |
CATCCCCAAGTCACTGCTTC+CGG | 0.400099 | 4.2:-5993511 | None:intergenic |
GCTGAGAAAACTTGAGATAA+GGG | 0.404897 | 4.2:+5993560 | MS.gene55719:CDS |
GCCCCTCAGTTATGTGAGCT+TGG | 0.420842 | 4.2:+5992700 | MS.gene55719:CDS |
AGAAGGAAGCGATGATAGTC+AGG | 0.422000 | 4.2:+5993734 | MS.gene55719:CDS |
ATGGAGGGGCATCCCTTCTT+GGG | 0.423321 | 4.2:-5993791 | None:intergenic |
AGCCTCAACTCCTCAAGAAA+AGG | 0.428352 | 4.2:-5991461 | None:intergenic |
CCTGCAGATCCCTTTGACGA+GGG | 0.435295 | 4.2:+5993153 | MS.gene55719:CDS |
TTTCAGAGAGTGAGAACAAA+TGG | 0.440221 | 4.2:-5993810 | None:intergenic |
ACCCAAAGGCGTCGAAGATT+AGG | 0.441455 | 4.2:-5992952 | None:intergenic |
CCCTCGTCAAAGGGATCTGC+AGG | 0.454715 | 4.2:-5993153 | None:intergenic |
GGGGTGCTGATATTCATTCA+TGG | 0.461105 | 4.2:+5991414 | MS.gene55719:CDS |
CATCCATAGGTTCATTCGTC+AGG | 0.461410 | 4.2:-5993356 | None:intergenic |
TTTGACGAGGGCGTTGTGCA+CGG | 0.463162 | 4.2:+5993165 | MS.gene55719:CDS |
AACCTGATACAGAAAGCCTT+TGG | 0.463742 | 4.2:-5993416 | None:intergenic |
AGCTGAGAAAACTTGAGATA+AGG | 0.465986 | 4.2:+5993559 | MS.gene55719:CDS |
GTGCACAACGCCCTCGTCAA+AGG | 0.468017 | 4.2:-5993163 | None:intergenic |
TACATCCATTCATTGTTACT+TGG | 0.471398 | 4.2:-5993662 | None:intergenic |
AATCTACTTGTCAAGATCTC+AGG | 0.472486 | 4.2:-5991320 | None:intergenic |
TGCACAACGCCCTCGTCAAA+GGG | 0.472717 | 4.2:-5993162 | None:intergenic |
TGCTGATATTCATTCATGGT+TGG | 0.476550 | 4.2:+5991418 | MS.gene55719:CDS |
TTTGCCGGAAGCAGTGACTT+GGG | 0.476674 | 4.2:+5993507 | MS.gene55719:CDS |
AGGGGCATCCCTTCTTGGGC+CGG | 0.481810 | 4.2:-5993787 | None:intergenic |
AGGATTTAGCACTGATGGCT+TGG | 0.482352 | 4.2:+5991571 | MS.gene55719:CDS |
GACTGCCAAGTAACAATGAA+TGG | 0.488206 | 4.2:+5993657 | MS.gene55719:CDS |
AAGCCTTTGGAGTTTAGTGC+AGG | 0.488319 | 4.2:-5993403 | None:intergenic |
AGAGGACGTAGTGAAGCTTC+CGG | 0.490890 | 4.2:-5993227 | None:intergenic |
GGAGTTGAGGCTCAAGAGAA+TGG | 0.491782 | 4.2:+5991472 | MS.gene55719:CDS |
GTTGAAGTAATTAAGGAAGA+AGG | 0.492228 | 4.2:+5993717 | MS.gene55719:CDS |
CAGTTATGTGAGCTTGGCAG+TGG | 0.493794 | 4.2:+5992706 | MS.gene55719:CDS |
ATAAGAAGTGTTACACTCAA+AGG | 0.496754 | 4.2:+5991350 | MS.gene55719:CDS |
CACCCTTTCTGGTTTATGGG+TGG | 0.500938 | 4.2:+5992804 | MS.gene55719:CDS |
GACCTCGCATTTGAGTATAT+AGG | 0.502729 | 4.2:+5993447 | MS.gene55719:CDS |
GAGATAAGGGACTGTCCATT+CGG | 0.505837 | 4.2:+5993573 | MS.gene55719:CDS |
GATGCGCTTGAGAAACTTGT+CGG | 0.507130 | 4.2:+5992601 | MS.gene55719:CDS |
TGTGAAGGATTTAGCACTGA+TGG | 0.507702 | 4.2:+5991566 | MS.gene55719:CDS |
TAAGAAGTGTTACACTCAAA+GGG | 0.508033 | 4.2:+5991351 | MS.gene55719:CDS |
TCGATGACAAAAGCGGTGAT+TGG | 0.508436 | 4.2:+5992503 | MS.gene55719:CDS |
CAGAGTATAGAACTTGAAGT+TGG | 0.510227 | 4.2:-5992849 | None:intergenic |
AGCCGGAAATGAGTGAAGTC+AGG | 0.523333 | 4.2:-5993303 | None:intergenic |
GTTCTGTTGCCGGCCCAAGA+AGG | 0.525623 | 4.2:+5993778 | MS.gene55719:CDS |
CTTTCTCTACTGAGTTGTGA+AGG | 0.527750 | 4.2:+5991551 | MS.gene55719:CDS |
ATTCTCTTGTATGTCAAGCT+CGG | 0.532804 | 4.2:-5992476 | None:intergenic |
TTCTGTTGCCGGCCCAAGAA+GGG | 0.535830 | 4.2:+5993779 | MS.gene55719:CDS |
GCTCCAAAGGCCTCATCCAT+AGG | 0.536354 | 4.2:-5993369 | None:intergenic |
GCCTCAACTCCTCAAGAAAA+GGG | 0.537412 | 4.2:-5991460 | None:intergenic |
TTGCTGTCTCTGAAGGATGC+CGG | 0.538728 | 4.2:+5993208 | MS.gene55719:CDS |
AGCCACCCATAAACCAGAAA+GGG | 0.542673 | 4.2:-5992806 | None:intergenic |
TAGGGGTCATGATGCACAGC+CGG | 0.545042 | 4.2:-5993320 | None:intergenic |
GGTCTTAACAACTGCTCCAA+AGG | 0.546055 | 4.2:-5993382 | None:intergenic |
CAGCATCATTTGTCATCTGA+TGG | 0.546732 | 4.2:-5993257 | None:intergenic |
TTACCTGACGAATGAACCTA+TGG | 0.549205 | 4.2:+5993353 | MS.gene55719:CDS |
TCCTGCAGATCCCTTTGACG+AGG | 0.558084 | 4.2:+5993152 | MS.gene55719:CDS |
CACAGTTGAAGACAAGGGAC+TGG | 0.558137 | 4.2:+5993083 | MS.gene55719:CDS |
ACACGTAGCTCCTCGAGCAA+TGG | 0.562903 | 4.2:-5993126 | None:intergenic |
GACAAGGGACTGGAAGCTGT+TGG | 0.564143 | 4.2:+5993093 | MS.gene55719:CDS |
ACGTTTCTCTGACTTCAACT+TGG | 0.564927 | 4.2:+5991379 | MS.gene55719:CDS |
TGACGAGGGCGTTGTGCACG+GGG | 0.568532 | 4.2:+5993167 | MS.gene55719:CDS |
AAACTTGGAAACGCTTTCAG+TGG | 0.570395 | 4.2:+5993482 | MS.gene55719:CDS |
ATGAGTCAATGAGATCACTT+TGG | 0.571140 | 4.2:+5993628 | MS.gene55719:CDS |
AATGAGATCACTTTGGATGT+CGG | 0.575734 | 4.2:+5993635 | MS.gene55719:CDS |
AAGCCACCCATAAACCAGAA+AGG | 0.576681 | 4.2:-5992807 | None:intergenic |
TTGCCGGAAGCAGTGACTTG+GGG | 0.577064 | 4.2:+5993508 | MS.gene55719:CDS |
GACGAATGAACCTATGGATG+AGG | 0.578886 | 4.2:+5993359 | MS.gene55719:CDS |
ATTACTTCAACATTCAACCT+CGG | 0.585805 | 4.2:-5993705 | None:intergenic |
TCATCTGATGGCAAAAGTAG+AGG | 0.589318 | 4.2:-5993245 | None:intergenic |
TTTCTTTAGTTTGCAAACAG+TGG | 0.597043 | 4.2:+5991237 | MS.gene55719:CDS |
AAAAGTGCTGCATCGCCGAA+TGG | 0.606996 | 4.2:-5993588 | None:intergenic |
CAGAGAGTGAGAACAAATGG+AGG | 0.612840 | 4.2:-5993807 | None:intergenic |
TGCCAAGCTCACATAACTGA+GGG | 0.617421 | 4.2:-5992702 | None:intergenic |
CGCTTGAGAAACTTGTCGGT+AGG | 0.619571 | 4.2:+5992605 | MS.gene55719:CDS |
AACTTGGTTCCTGAAAATTG+GGG | 0.622806 | 4.2:+5991395 | MS.gene55719:CDS |
AGAGAGTGAGAACAAATGGA+GGG | 0.623048 | 4.2:-5993806 | None:intergenic |
ATCATATTGTCCATTGCTCG+AGG | 0.624054 | 4.2:+5993116 | MS.gene55719:CDS |
TCCCTATATACTCAAATGCG+AGG | 0.631371 | 4.2:-5993449 | None:intergenic |
TGTTAGCAAAAGAAAAGCCG+AGG | 0.639572 | 4.2:+5993688 | MS.gene55719:CDS |
TGTAGACACAGTTGAAGACA+AGG | 0.644710 | 4.2:+5993077 | MS.gene55719:CDS |
AGACCTGCACTAAACTCCAA+AGG | 0.647440 | 4.2:+5993400 | MS.gene55719:CDS |
AATGACATCGATGACAAAAG+CGG | 0.649581 | 4.2:+5992496 | MS.gene55719:CDS |
CAGGTAATCTGGCTGATTAG+GGG | 0.650421 | 4.2:-5993337 | None:intergenic |
CTGCCAAGCTCACATAACTG+AGG | 0.656866 | 4.2:-5992703 | None:intergenic |
ACAACGCTGAAAGATTGTCA+AGG | 0.689288 | 4.2:+5991261 | MS.gene55719:CDS |
GAGAGTGAGAACAAATGGAG+GGG | 0.695193 | 4.2:-5993805 | None:intergenic |
ACGCTGAAAGATTGTCAAGG+AGG | 0.697851 | 4.2:+5991264 | MS.gene55719:CDS |
GCCAAGCTCACATAACTGAG+GGG | 0.733620 | 4.2:-5992701 | None:intergenic |
GTAGACACAGTTGAAGACAA+GGG | 0.743765 | 4.2:+5993078 | MS.gene55719:CDS |
AAGTTGAAGTCAGAGAAACG+TGG | 0.761191 | 4.2:-5991377 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTAAATGTGATTTAAT+AGG | + | chr4.2:5992193-5992212 | MS.gene55719:intron | 10.0% |
!! | TAATTAAATGTGATTTAATA+GGG | + | chr4.2:5992194-5992213 | MS.gene55719:intron | 10.0% |
!! | ATGTAAATAATTTATGTCAA+CGG | - | chr4.2:5992011-5992030 | None:intergenic | 15.0% |
!! | CAATAAATACTGATATATTT+AGG | - | chr4.2:5991737-5991756 | None:intergenic | 15.0% |
!! | TAAATCAATCTATGAATTAA+TGG | - | chr4.2:5991935-5991954 | None:intergenic | 15.0% |
!!! | AATTCATAGATTGATTTATT+AGG | + | chr4.2:5991937-5991956 | MS.gene55719:intron | 15.0% |
!!! | CTTTTTAAGATTCTTAATTA+AGG | + | chr4.2:5992069-5992088 | MS.gene55719:intron | 15.0% |
!!! | TTTTTTTTAGATTTAGCATA+GGG | + | chr4.2:5992229-5992248 | MS.gene55719:intron | 15.0% |
!!! | TTTTTTTTTAGATTTAGCAT+AGG | + | chr4.2:5992228-5992247 | MS.gene55719:intron | 15.0% |
!! | CATTTAATTATGTAACAATG+AGG | - | chr4.2:5992184-5992203 | None:intergenic | 20.0% |
!! | GCATATATGATTATTAACTT+TGG | + | chr4.2:5992267-5992286 | MS.gene55719:intron | 20.0% |
!! | TATCAATCAATTATAATAGC+CGG | - | chr4.2:5992113-5992132 | None:intergenic | 20.0% |
!! | TTTGAAAATTTGGTATTTCT+TGG | + | chr4.2:5992412-5992431 | MS.gene55719:intron | 20.0% |
!!! | AAAGAATGATGAAAATGTTT+TGG | + | chr4.2:5993034-5993053 | MS.gene55719:intron | 20.0% |
! | ATAAAGAAAATCATACCCAA+AGG | - | chr4.2:5992969-5992988 | None:intergenic | 25.0% |
! | ATCATATATGCAGTACTTAA+AGG | - | chr4.2:5992258-5992277 | None:intergenic | 25.0% |
! | ATTAGGATTCACTAAAATAC+AGG | + | chr4.2:5991954-5991973 | MS.gene55719:intron | 25.0% |
! | CATATCGAGATTTGAAAATT+TGG | + | chr4.2:5992402-5992421 | MS.gene55719:intron | 25.0% |
! | CGATATTTACATCATTGTTT+AGG | - | chr4.2:5992582-5992601 | None:intergenic | 25.0% |
! | GTTGAATGTTGAAGTAATTA+AGG | + | chr4.2:5993710-5993729 | MS.gene55719:CDS | 25.0% |
! | TAAATCTTACTTGCAATTAG+TGG | - | chr4.2:5991606-5991625 | None:intergenic | 25.0% |
! | TGAATCCATAAAAATACTTG+TGG | + | chr4.2:5992147-5992166 | MS.gene55719:intron | 25.0% |
!!! | AAGTTCCACAAGTATTTTTA+TGG | - | chr4.2:5992155-5992174 | None:intergenic | 25.0% |
!!! | CTAAGATTTGTTGTATTGTA+TGG | + | chr4.2:5991850-5991869 | MS.gene55719:intron | 25.0% |
AGTGTAACACTTCTTATGTT+TGG | - | chr4.2:5991347-5991366 | None:intergenic | 30.0% | |
ATTACTTCAACATTCAACCT+CGG | - | chr4.2:5993708-5993727 | None:intergenic | 30.0% | |
GTTGAAGTAATTAAGGAAGA+AGG | + | chr4.2:5993717-5993736 | MS.gene55719:CDS | 30.0% | |
TACATCCATTCATTGTTACT+TGG | - | chr4.2:5993665-5993684 | None:intergenic | 30.0% | |
TCTGAATATTACATTGATGC+AGG | + | chr4.2:5992446-5992465 | MS.gene55719:intron | 30.0% | |
TTGGAACATCTACATTATAC+AGG | + | chr4.2:5993053-5993072 | MS.gene55719:intron | 30.0% | |
! | GACAAGCATTTTTAATGATC+CGG | + | chr4.2:5992091-5992110 | MS.gene55719:intron | 30.0% |
! | GCTTTTTGCACATATACAAT+TGG | - | chr4.2:5992050-5992069 | None:intergenic | 30.0% |
!! | ATAAGAAGTGTTACACTCAA+AGG | + | chr4.2:5991350-5991369 | MS.gene55719:CDS | 30.0% |
!! | TAAGAAGTGTTACACTCAAA+GGG | + | chr4.2:5991351-5991370 | MS.gene55719:CDS | 30.0% |
!! | TGATGAGAGTTTAGAGTTTT+TGG | + | chr4.2:5991502-5991521 | MS.gene55719:CDS | 30.0% |
!! | TTTCTTTAGTTTGCAAACAG+TGG | + | chr4.2:5991237-5991256 | MS.gene55719:CDS | 30.0% |
AACTTGGTTCCTGAAAATTG+GGG | + | chr4.2:5991395-5991414 | MS.gene55719:CDS | 35.0% | |
AATCTACTTGTCAAGATCTC+AGG | - | chr4.2:5991323-5991342 | None:intergenic | 35.0% | |
AATGACATCGATGACAAAAG+CGG | + | chr4.2:5992496-5992515 | MS.gene55719:CDS | 35.0% | |
AATGAGATCACTTTGGATGT+CGG | + | chr4.2:5993635-5993654 | MS.gene55719:CDS | 35.0% | |
ACCTCGCATTTGAGTATATA+GGG | + | chr4.2:5993448-5993467 | MS.gene55719:CDS | 35.0% | |
AGCTGAGAAAACTTGAGATA+AGG | + | chr4.2:5993559-5993578 | MS.gene55719:CDS | 35.0% | |
ATGAGTCAATGAGATCACTT+TGG | + | chr4.2:5993628-5993647 | MS.gene55719:CDS | 35.0% | |
ATGGATTCAACAAACATGCA+TGG | - | chr4.2:5992136-5992155 | None:intergenic | 35.0% | |
ATTCTCTTGTATGTCAAGCT+CGG | - | chr4.2:5992479-5992498 | None:intergenic | 35.0% | |
CAACTTGGTTCCTGAAAATT+GGG | + | chr4.2:5991394-5991413 | MS.gene55719:CDS | 35.0% | |
CAGAGTATAGAACTTGAAGT+TGG | - | chr4.2:5992852-5992871 | None:intergenic | 35.0% | |
CCAATGATGTAAAGCTTTCT+GGG | - | chr4.2:5992540-5992559 | None:intergenic | 35.0% | |
GCTGAGAAAACTTGAGATAA+GGG | + | chr4.2:5993560-5993579 | MS.gene55719:CDS | 35.0% | |
TATGTTTATCGTTCTGTTGC+CGG | + | chr4.2:5993768-5993787 | MS.gene55719:CDS | 35.0% | |
TCAACTTGGTTCCTGAAAAT+TGG | + | chr4.2:5991393-5991412 | MS.gene55719:CDS | 35.0% | |
TCCAATGATGTAAAGCTTTC+TGG | - | chr4.2:5992541-5992560 | None:intergenic | 35.0% | |
TGCTGATATTCATTCATGGT+TGG | + | chr4.2:5991418-5991437 | MS.gene55719:CDS | 35.0% | |
! | ATCTCAAGTTTTCTCAGCTT+CGG | - | chr4.2:5993558-5993577 | None:intergenic | 35.0% |
! | CATCAACTTTTCTCCAGTAA+AGG | - | chr4.2:5991898-5991917 | None:intergenic | 35.0% |
! | TCAAGGAGGAATGTTTTCAT+AGG | + | chr4.2:5991278-5991297 | MS.gene55719:CDS | 35.0% |
!! | GAAGTGTTGAAACAAGTTCT+TGG | + | chr4.2:5991182-5991201 | MS.gene55719:CDS | 35.0% |
!!! | TGAAAAGTACCCTTTTCTTG+AGG | + | chr4.2:5991451-5991470 | MS.gene55719:CDS | 35.0% |
!!! | TGAAAGCGTTTCCAAGTTTT+TGG | - | chr4.2:5993481-5993500 | None:intergenic | 35.0% |
!!! | TTGCGTTGTTTTTCCTTTAC+TGG | + | chr4.2:5991882-5991901 | MS.gene55719:intron | 35.0% |
AAACTTGGAAACGCTTTCAG+TGG | + | chr4.2:5993482-5993501 | MS.gene55719:CDS | 40.0% | |
AACCTGATACAGAAAGCCTT+TGG | - | chr4.2:5993419-5993438 | None:intergenic | 40.0% | |
AAGAGAATCCTTGTCCTATG+AGG | + | chr4.2:5991817-5991836 | MS.gene55719:intron | 40.0% | |
AAGGAAAAACAACGCAAACC+AGG | - | chr4.2:5991879-5991898 | None:intergenic | 40.0% | |
AAGTTGAAGTCAGAGAAACG+TGG | - | chr4.2:5991380-5991399 | None:intergenic | 40.0% | |
AATCCTTGTCCTATGAGGAT+AGG | + | chr4.2:5991822-5991841 | MS.gene55719:intron | 40.0% | |
ACAACGCTGAAAGATTGTCA+AGG | + | chr4.2:5991261-5991280 | MS.gene55719:CDS | 40.0% | |
ACGTTTCTCTGACTTCAACT+TGG | + | chr4.2:5991379-5991398 | MS.gene55719:CDS | 40.0% | |
AGAGAGTGAGAACAAATGGA+GGG | - | chr4.2:5993809-5993828 | None:intergenic | 40.0% | |
AGTTGTGTGTGAGTTTCAAG+TGG | - | chr4.2:5991676-5991695 | None:intergenic | 40.0% | |
ATCACACTGCTTATGCTTTC+AGG | - | chr4.2:5992309-5992328 | None:intergenic | 40.0% | |
ATCATATTGTCCATTGCTCG+AGG | + | chr4.2:5993116-5993135 | MS.gene55719:CDS | 40.0% | |
CAAGGATTCTCTTCTCTAGT+TGG | - | chr4.2:5991810-5991829 | None:intergenic | 40.0% | |
CAGCATCATTTGTCATCTGA+TGG | - | chr4.2:5993260-5993279 | None:intergenic | 40.0% | |
CCCAGAAAGCTTTACATCAT+TGG | + | chr4.2:5992537-5992556 | MS.gene55719:CDS | 40.0% | |
CTTTCTCTACTGAGTTGTGA+AGG | + | chr4.2:5991551-5991570 | MS.gene55719:CDS | 40.0% | |
GACCTCGCATTTGAGTATAT+AGG | + | chr4.2:5993447-5993466 | MS.gene55719:CDS | 40.0% | |
GACTGCCAAGTAACAATGAA+TGG | + | chr4.2:5993657-5993676 | MS.gene55719:CDS | 40.0% | |
GTAGACACAGTTGAAGACAA+GGG | + | chr4.2:5993078-5993097 | MS.gene55719:CDS | 40.0% | |
TCACACTGCTTATGCTTTCA+GGG | - | chr4.2:5992308-5992327 | None:intergenic | 40.0% | |
TCAGGTAATCTGGCTGATTA+GGG | - | chr4.2:5993341-5993360 | None:intergenic | 40.0% | |
TCATCTGATGGCAAAAGTAG+AGG | - | chr4.2:5993248-5993267 | None:intergenic | 40.0% | |
TCCCTATATACTCAAATGCG+AGG | - | chr4.2:5993452-5993471 | None:intergenic | 40.0% | |
TCTACCGAAAAATGTCCGTA+GGG | - | chr4.2:5991785-5991804 | None:intergenic | 40.0% | |
TGTAGACACAGTTGAAGACA+AGG | + | chr4.2:5993077-5993096 | MS.gene55719:CDS | 40.0% | |
TGTTAGCAAAAGAAAAGCCG+AGG | + | chr4.2:5993688-5993707 | MS.gene55719:CDS | 40.0% | |
TTACCTGACGAATGAACCTA+TGG | + | chr4.2:5993353-5993372 | MS.gene55719:CDS | 40.0% | |
! | AGGGAAGTATGCCAAAAACT+TGG | + | chr4.2:5993467-5993486 | MS.gene55719:CDS | 40.0% |
! | ATATCAGCACCCCAATTTTC+AGG | - | chr4.2:5991407-5991426 | None:intergenic | 40.0% |
! | TGTGAAGGATTTAGCACTGA+TGG | + | chr4.2:5991566-5991585 | MS.gene55719:CDS | 40.0% |
!! | AAGAGTATTCACACCCTTTC+TGG | + | chr4.2:5992793-5992812 | MS.gene55719:CDS | 40.0% |
!! | TCACACCCTTTCTGGTTTAT+GGG | + | chr4.2:5992801-5992820 | MS.gene55719:CDS | 40.0% |
!! | TTCACACCCTTTCTGGTTTA+TGG | + | chr4.2:5992800-5992819 | MS.gene55719:CDS | 40.0% |
!!! | GGTTTTATTGCTGTCTCTGA+AGG | + | chr4.2:5993201-5993220 | MS.gene55719:CDS | 40.0% |
AAGCCACCCATAAACCAGAA+AGG | - | chr4.2:5992810-5992829 | None:intergenic | 45.0% | |
AAGCCTATCCTCATAGGACA+AGG | - | chr4.2:5991828-5991847 | None:intergenic | 45.0% | |
ACGCTGAAAGATTGTCAAGG+AGG | + | chr4.2:5991264-5991283 | MS.gene55719:CDS | 45.0% | |
AGAAGGAAGCGATGATAGTC+AGG | + | chr4.2:5993734-5993753 | MS.gene55719:CDS | 45.0% | |
AGACCTGCACTAAACTCCAA+AGG | + | chr4.2:5993400-5993419 | MS.gene55719:CDS | 45.0% | |
AGCCACCCATAAACCAGAAA+GGG | - | chr4.2:5992809-5992828 | None:intergenic | 45.0% | |
AGCCTCAACTCCTCAAGAAA+AGG | - | chr4.2:5991464-5991483 | None:intergenic | 45.0% | |
CAAGATCCTGGTTTCGAATC+TGG | + | chr4.2:5991697-5991716 | MS.gene55719:intron | 45.0% | |
CAGAGAGTGAGAACAAATGG+AGG | - | chr4.2:5993810-5993829 | None:intergenic | 45.0% | |
CAGGTAATCTGGCTGATTAG+GGG | - | chr4.2:5993340-5993359 | None:intergenic | 45.0% | |
CATCCATAGGTTCATTCGTC+AGG | - | chr4.2:5993359-5993378 | None:intergenic | 45.0% | |
CTCCAAAGGCTTTCTGTATC+AGG | + | chr4.2:5993414-5993433 | MS.gene55719:CDS | 45.0% | |
CTCTACCGAAAAATGTCCGT+AGG | - | chr4.2:5991786-5991805 | None:intergenic | 45.0% | |
CTTCATCCAGATTCGAAACC+AGG | - | chr4.2:5991706-5991725 | None:intergenic | 45.0% | |
GACGAATGAACCTATGGATG+AGG | + | chr4.2:5993359-5993378 | MS.gene55719:CDS | 45.0% | |
GAGAGTGAGAACAAATGGAG+GGG | - | chr4.2:5993808-5993827 | None:intergenic | 45.0% | |
GAGATAAGGGACTGTCCATT+CGG | + | chr4.2:5993573-5993592 | MS.gene55719:CDS | 45.0% | |
GATGCGCTTGAGAAACTTGT+CGG | + | chr4.2:5992601-5992620 | MS.gene55719:CDS | 45.0% | |
GCCTCAACTCCTCAAGAAAA+GGG | - | chr4.2:5991463-5991482 | None:intergenic | 45.0% | |
GGTCTTAACAACTGCTCCAA+AGG | - | chr4.2:5993385-5993404 | None:intergenic | 45.0% | |
GGTTCATTCGTCAGGTAATC+TGG | - | chr4.2:5993351-5993370 | None:intergenic | 45.0% | |
GTCAGGTAATCTGGCTGATT+AGG | - | chr4.2:5993342-5993361 | None:intergenic | 45.0% | |
GTCCTGACTTCACTCATTTC+CGG | + | chr4.2:5993301-5993320 | MS.gene55719:CDS | 45.0% | |
TCCTAATCTTCGACGCCTTT+GGG | + | chr4.2:5992951-5992970 | MS.gene55719:CDS | 45.0% | |
TCGATGACAAAAGCGGTGAT+TGG | + | chr4.2:5992503-5992522 | MS.gene55719:CDS | 45.0% | |
TGCCAAGCTCACATAACTGA+GGG | - | chr4.2:5992705-5992724 | None:intergenic | 45.0% | |
TGTTGTATTGTATGGCTGCC+TGG | + | chr4.2:5991858-5991877 | MS.gene55719:intron | 45.0% | |
TTAGCCAAGCCTATCCTCAT+AGG | - | chr4.2:5991834-5991853 | None:intergenic | 45.0% | |
TTGTCCTATGAGGATAGGCT+TGG | + | chr4.2:5991827-5991846 | MS.gene55719:intron | 45.0% | |
! | ACCCTTTTCTTGAGGAGTTG+AGG | + | chr4.2:5991459-5991478 | MS.gene55719:CDS | 45.0% |
! | TGCAGCACTTTTGTCTGGTT+TGG | + | chr4.2:5993599-5993618 | MS.gene55719:CDS | 45.0% |
!! | AAGCCTTTGGAGTTTAGTGC+AGG | - | chr4.2:5993406-5993425 | None:intergenic | 45.0% |
!! | AGGATTTAGCACTGATGGCT+TGG | + | chr4.2:5991571-5991590 | MS.gene55719:CDS | 45.0% |
!! | GGGGTGCTGATATTCATTCA+TGG | + | chr4.2:5991414-5991433 | MS.gene55719:CDS | 45.0% |
ACCGAAAAATGTCCGTAGGG+TGG | - | chr4.2:5991782-5991801 | None:intergenic | 50.0% | |
AGAGGACGTAGTGAAGCTTC+CGG | - | chr4.2:5993230-5993249 | None:intergenic | 50.0% | |
AGCCGGAAATGAGTGAAGTC+AGG | - | chr4.2:5993306-5993325 | None:intergenic | 50.0% | |
CACACACAACTGCAAGATCC+TGG | + | chr4.2:5991685-5991704 | MS.gene55719:intron | 50.0% | |
CACAGTTGAAGACAAGGGAC+TGG | + | chr4.2:5993083-5993102 | MS.gene55719:CDS | 50.0% | |
CAGTTATGTGAGCTTGGCAG+TGG | + | chr4.2:5992706-5992725 | MS.gene55719:CDS | 50.0% | |
CCGAAAAATGTCCGTAGGGT+GGG | - | chr4.2:5991781-5991800 | None:intergenic | 50.0% | |
CGCTTGAGAAACTTGTCGGT+AGG | + | chr4.2:5992605-5992624 | MS.gene55719:CDS | 50.0% | |
CTGCCAAGCTCACATAACTG+AGG | - | chr4.2:5992706-5992725 | None:intergenic | 50.0% | |
GAACCTATGGATGAGGCCTT+TGG | + | chr4.2:5993366-5993385 | MS.gene55719:CDS | 50.0% | |
GCCAAGCTCACATAACTGAG+GGG | - | chr4.2:5992704-5992723 | None:intergenic | 50.0% | |
GGAGTTGAGGCTCAAGAGAA+TGG | + | chr4.2:5991472-5991491 | MS.gene55719:CDS | 50.0% | |
GTCCTAATCTTCGACGCCTT+TGG | + | chr4.2:5992950-5992969 | MS.gene55719:CDS | 50.0% | |
TAGACTCTAGACCCACCCTA+CGG | + | chr4.2:5991767-5991786 | MS.gene55719:intron | 50.0% | |
TTTGCCGGAAGCAGTGACTT+GGG | + | chr4.2:5993507-5993526 | MS.gene55719:CDS | 50.0% | |
! | ACGCTTTCAGTGGCTTTTGC+CGG | + | chr4.2:5993492-5993511 | MS.gene55719:CDS | 50.0% |
! | CCCACCCTACGGACATTTTT+CGG | + | chr4.2:5991778-5991797 | MS.gene55719:intron | 50.0% |
! | TTGCTGTCTCTGAAGGATGC+CGG | + | chr4.2:5993208-5993227 | MS.gene55719:CDS | 50.0% |
! | TTTTGCCGGAAGCAGTGACT+TGG | + | chr4.2:5993506-5993525 | MS.gene55719:CDS | 50.0% |
!! | AAAAGTGCTGCATCGCCGAA+TGG | - | chr4.2:5993591-5993610 | None:intergenic | 50.0% |
!! | ACCCAAAGGCGTCGAAGATT+AGG | - | chr4.2:5992955-5992974 | None:intergenic | 50.0% |
!! | CACCCTTTCTGGTTTATGGG+TGG | + | chr4.2:5992804-5992823 | MS.gene55719:CDS | 50.0% |
ACACGTAGCTCCTCGAGCAA+TGG | - | chr4.2:5993129-5993148 | None:intergenic | 55.0% | |
CATCCCCAAGTCACTGCTTC+CGG | - | chr4.2:5993514-5993533 | None:intergenic | 55.0% | |
CCTGCAGATCCCTTTGACGA+GGG | + | chr4.2:5993153-5993172 | MS.gene55719:CDS | 55.0% | |
GACAAGGGACTGGAAGCTGT+TGG | + | chr4.2:5993093-5993112 | MS.gene55719:CDS | 55.0% | |
GCCCCTCAGTTATGTGAGCT+TGG | + | chr4.2:5992700-5992719 | MS.gene55719:CDS | 55.0% | |
GCTCCAAAGGCCTCATCCAT+AGG | - | chr4.2:5993372-5993391 | None:intergenic | 55.0% | |
GGGATGCAGTCTGTACTTGC+TGG | + | chr4.2:5993528-5993547 | MS.gene55719:CDS | 55.0% | |
GTGCACGGGGTTACTGAATC+AGG | + | chr4.2:5993180-5993199 | MS.gene55719:CDS | 55.0% | |
TAGGGGTCATGATGCACAGC+CGG | - | chr4.2:5993323-5993342 | None:intergenic | 55.0% | |
TCCTGCAGATCCCTTTGACG+AGG | + | chr4.2:5993152-5993171 | MS.gene55719:CDS | 55.0% | |
TGCACAACGCCCTCGTCAAA+GGG | - | chr4.2:5993165-5993184 | None:intergenic | 55.0% | |
TTCTGTTGCCGGCCCAAGAA+GGG | + | chr4.2:5993779-5993798 | MS.gene55719:CDS | 55.0% | |
TTGCCGGAAGCAGTGACTTG+GGG | + | chr4.2:5993508-5993527 | MS.gene55719:CDS | 55.0% | |
! | GGCGATGCAGCACTTTTGTC+TGG | + | chr4.2:5993594-5993613 | MS.gene55719:CDS | 55.0% |
!! | AATGGAGGGGCATCCCTTCT+TGG | - | chr4.2:5993795-5993814 | None:intergenic | 55.0% |
!! | ATGGAGGGGCATCCCTTCTT+GGG | - | chr4.2:5993794-5993813 | None:intergenic | 55.0% |
!! | TTTGACGAGGGCGTTGTGCA+CGG | + | chr4.2:5993165-5993184 | MS.gene55719:CDS | 55.0% |
CCCTCGTCAAAGGGATCTGC+AGG | - | chr4.2:5993156-5993175 | None:intergenic | 60.0% | |
GTGCACAACGCCCTCGTCAA+AGG | - | chr4.2:5993166-5993185 | None:intergenic | 60.0% | |
GTTCTGTTGCCGGCCCAAGA+AGG | + | chr4.2:5993778-5993797 | MS.gene55719:CDS | 60.0% | |
!! | TTGACGAGGGCGTTGTGCAC+GGG | + | chr4.2:5993166-5993185 | MS.gene55719:CDS | 60.0% |
!! | AGGGGCATCCCTTCTTGGGC+CGG | - | chr4.2:5993790-5993809 | None:intergenic | 65.0% |
!! | TGACGAGGGCGTTGTGCACG+GGG | + | chr4.2:5993167-5993186 | MS.gene55719:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 5991155 | 5993830 | 5991155 | ID=MS.gene55719 |
chr4.2 | mRNA | 5991155 | 5993830 | 5991155 | ID=MS.gene55719.t1;Parent=MS.gene55719 |
chr4.2 | exon | 5991155 | 5991615 | 5991155 | ID=MS.gene55719.t1.exon1;Parent=MS.gene55719.t1 |
chr4.2 | CDS | 5991155 | 5991615 | 5991155 | ID=cds.MS.gene55719.t1;Parent=MS.gene55719.t1 |
chr4.2 | exon | 5992468 | 5992972 | 5992468 | ID=MS.gene55719.t1.exon2;Parent=MS.gene55719.t1 |
chr4.2 | CDS | 5992468 | 5992972 | 5992468 | ID=cds.MS.gene55719.t1;Parent=MS.gene55719.t1 |
chr4.2 | exon | 5993075 | 5993830 | 5993075 | ID=MS.gene55719.t1.exon3;Parent=MS.gene55719.t1 |
chr4.2 | CDS | 5993075 | 5993830 | 5993075 | ID=cds.MS.gene55719.t1;Parent=MS.gene55719.t1 |
Gene Sequence |
Protein sequence |