AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55719


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55719.t1 MTR_8g098695 97.208 573 16 0 1 573 1 573 0.0 1155
MS.gene55719.t1 MTR_4g091290 83.390 590 77 3 1 573 3 588 0.0 1009
MS.gene55719.t1 MTR_7g083610 55.846 573 238 5 9 573 6 571 0.0 642
MS.gene55719.t1 MTR_1g088950 53.158 570 258 2 9 573 16 581 0.0 638
MS.gene55719.t1 MTR_5g065490 49.825 572 272 6 9 573 53 616 0.0 546
MS.gene55719.t1 MTR_3g100860 49.477 574 274 6 11 573 25 593 0.0 545
MS.gene55719.t1 MTR_5g081870 32.657 591 357 15 6 573 10 582 1.18e-93 299
MS.gene55719.t1 MTR_3g070140 30.252 595 373 11 6 573 14 593 2.00e-79 261
MS.gene55719.t1 MTR_5g086490 44.355 124 54 1 9 132 6 114 1.53e-26 104
MS.gene55719.t1 MTR_2g021030 23.506 502 287 14 9 493 13 434 2.83e-23 103
MS.gene55719.t1 MTR_2g021030 22.344 546 326 14 9 536 13 478 4.34e-23 103
MS.gene55719.t1 MTR_7g112570 22.871 599 362 21 9 535 51 621 3.10e-14 76.3
MS.gene55719.t1 MTR_7g112570 22.662 556 331 20 9 493 51 578 1.50e-13 73.9
MS.gene55719.t1 MTR_7g112570 22.662 556 331 20 9 493 51 578 2.71e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55719.t1 AT3G62980 55.614 570 244 2 9 573 11 576 0.0 631
MS.gene55719.t1 AT1G12820 52.405 582 250 5 9 573 6 577 0.0 622
MS.gene55719.t1 AT3G26810 53.913 575 250 5 9 573 6 575 0.0 620
MS.gene55719.t1 AT4G03190 53.147 572 260 3 6 573 4 571 0.0 614
MS.gene55719.t1 AT4G24390 50.261 575 269 6 9 573 56 623 0.0 566
MS.gene55719.t1 AT4G24390 50.261 575 269 6 9 573 56 623 0.0 566
MS.gene55719.t1 AT5G49980 49.385 569 279 5 9 573 56 619 0.0 551
MS.gene55719.t1 AT2G39940 31.472 591 369 12 4 573 13 588 3.72e-98 310
MS.gene55719.t1 AT4G15475 22.263 548 340 19 9 493 13 537 5.80e-21 97.4
MS.gene55719.t1 AT5G25350 27.119 236 128 10 315 519 166 388 1.11e-11 68.2

Find 113 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGATGTAAAGCTTTC+TGG 0.104076 4.2:-5992538 None:intergenic
TTCACACCCTTTCTGGTTTA+TGG 0.116366 4.2:+5992800 MS.gene55719:CDS
TCAACTTGGTTCCTGAAAAT+TGG 0.125267 4.2:+5991393 MS.gene55719:CDS
AAGAGTATTCACACCCTTTC+TGG 0.148691 4.2:+5992793 MS.gene55719:CDS
CTCCAAAGGCTTTCTGTATC+AGG 0.215148 4.2:+5993414 MS.gene55719:CDS
CAACTTGGTTCCTGAAAATT+GGG 0.247042 4.2:+5991394 MS.gene55719:CDS
GTTGAATGTTGAAGTAATTA+AGG 0.252910 4.2:+5993710 MS.gene55719:CDS
TCACACCCTTTCTGGTTTAT+GGG 0.255188 4.2:+5992801 MS.gene55719:CDS
GTCCTGACTTCACTCATTTC+CGG 0.263095 4.2:+5993301 MS.gene55719:CDS
CGATATTTACATCATTGTTT+AGG 0.287424 4.2:-5992579 None:intergenic
GTCCTAATCTTCGACGCCTT+TGG 0.294619 4.2:+5992950 MS.gene55719:CDS
TATGTTTATCGTTCTGTTGC+CGG 0.306416 4.2:+5993768 MS.gene55719:CDS
AGTGTAACACTTCTTATGTT+TGG 0.320668 4.2:-5991344 None:intergenic
TCCTAATCTTCGACGCCTTT+GGG 0.326628 4.2:+5992951 MS.gene55719:CDS
GTCAGGTAATCTGGCTGATT+AGG 0.330799 4.2:-5993339 None:intergenic
CCCAGAAAGCTTTACATCAT+TGG 0.331548 4.2:+5992537 MS.gene55719:CDS
AATGGAGGGGCATCCCTTCT+TGG 0.338658 4.2:-5993792 None:intergenic
TCAGGTAATCTGGCTGATTA+GGG 0.351214 4.2:-5993338 None:intergenic
TAAATCTTACTTGCAATTAG+TGG 0.351338 4.2:-5991603 None:intergenic
GAAGTGTTGAAACAAGTTCT+TGG 0.355603 4.2:+5991182 MS.gene55719:CDS
TTGACGAGGGCGTTGTGCAC+GGG 0.358953 4.2:+5993166 MS.gene55719:CDS
CCAATGATGTAAAGCTTTCT+GGG 0.365785 4.2:-5992537 None:intergenic
GGTTCATTCGTCAGGTAATC+TGG 0.379909 4.2:-5993348 None:intergenic
GTGCACGGGGTTACTGAATC+AGG 0.384151 4.2:+5993180 MS.gene55719:CDS
GGGATGCAGTCTGTACTTGC+TGG 0.384929 4.2:+5993528 MS.gene55719:CDS
ACCTCGCATTTGAGTATATA+GGG 0.389051 4.2:+5993448 MS.gene55719:CDS
GAACCTATGGATGAGGCCTT+TGG 0.395697 4.2:+5993366 MS.gene55719:CDS
CATCCCCAAGTCACTGCTTC+CGG 0.400099 4.2:-5993511 None:intergenic
GCTGAGAAAACTTGAGATAA+GGG 0.404897 4.2:+5993560 MS.gene55719:CDS
GCCCCTCAGTTATGTGAGCT+TGG 0.420842 4.2:+5992700 MS.gene55719:CDS
AGAAGGAAGCGATGATAGTC+AGG 0.422000 4.2:+5993734 MS.gene55719:CDS
ATGGAGGGGCATCCCTTCTT+GGG 0.423321 4.2:-5993791 None:intergenic
AGCCTCAACTCCTCAAGAAA+AGG 0.428352 4.2:-5991461 None:intergenic
CCTGCAGATCCCTTTGACGA+GGG 0.435295 4.2:+5993153 MS.gene55719:CDS
TTTCAGAGAGTGAGAACAAA+TGG 0.440221 4.2:-5993810 None:intergenic
ACCCAAAGGCGTCGAAGATT+AGG 0.441455 4.2:-5992952 None:intergenic
CCCTCGTCAAAGGGATCTGC+AGG 0.454715 4.2:-5993153 None:intergenic
GGGGTGCTGATATTCATTCA+TGG 0.461105 4.2:+5991414 MS.gene55719:CDS
CATCCATAGGTTCATTCGTC+AGG 0.461410 4.2:-5993356 None:intergenic
TTTGACGAGGGCGTTGTGCA+CGG 0.463162 4.2:+5993165 MS.gene55719:CDS
AACCTGATACAGAAAGCCTT+TGG 0.463742 4.2:-5993416 None:intergenic
AGCTGAGAAAACTTGAGATA+AGG 0.465986 4.2:+5993559 MS.gene55719:CDS
GTGCACAACGCCCTCGTCAA+AGG 0.468017 4.2:-5993163 None:intergenic
TACATCCATTCATTGTTACT+TGG 0.471398 4.2:-5993662 None:intergenic
AATCTACTTGTCAAGATCTC+AGG 0.472486 4.2:-5991320 None:intergenic
TGCACAACGCCCTCGTCAAA+GGG 0.472717 4.2:-5993162 None:intergenic
TGCTGATATTCATTCATGGT+TGG 0.476550 4.2:+5991418 MS.gene55719:CDS
TTTGCCGGAAGCAGTGACTT+GGG 0.476674 4.2:+5993507 MS.gene55719:CDS
AGGGGCATCCCTTCTTGGGC+CGG 0.481810 4.2:-5993787 None:intergenic
AGGATTTAGCACTGATGGCT+TGG 0.482352 4.2:+5991571 MS.gene55719:CDS
GACTGCCAAGTAACAATGAA+TGG 0.488206 4.2:+5993657 MS.gene55719:CDS
AAGCCTTTGGAGTTTAGTGC+AGG 0.488319 4.2:-5993403 None:intergenic
AGAGGACGTAGTGAAGCTTC+CGG 0.490890 4.2:-5993227 None:intergenic
GGAGTTGAGGCTCAAGAGAA+TGG 0.491782 4.2:+5991472 MS.gene55719:CDS
GTTGAAGTAATTAAGGAAGA+AGG 0.492228 4.2:+5993717 MS.gene55719:CDS
CAGTTATGTGAGCTTGGCAG+TGG 0.493794 4.2:+5992706 MS.gene55719:CDS
ATAAGAAGTGTTACACTCAA+AGG 0.496754 4.2:+5991350 MS.gene55719:CDS
CACCCTTTCTGGTTTATGGG+TGG 0.500938 4.2:+5992804 MS.gene55719:CDS
GACCTCGCATTTGAGTATAT+AGG 0.502729 4.2:+5993447 MS.gene55719:CDS
GAGATAAGGGACTGTCCATT+CGG 0.505837 4.2:+5993573 MS.gene55719:CDS
GATGCGCTTGAGAAACTTGT+CGG 0.507130 4.2:+5992601 MS.gene55719:CDS
TGTGAAGGATTTAGCACTGA+TGG 0.507702 4.2:+5991566 MS.gene55719:CDS
TAAGAAGTGTTACACTCAAA+GGG 0.508033 4.2:+5991351 MS.gene55719:CDS
TCGATGACAAAAGCGGTGAT+TGG 0.508436 4.2:+5992503 MS.gene55719:CDS
CAGAGTATAGAACTTGAAGT+TGG 0.510227 4.2:-5992849 None:intergenic
AGCCGGAAATGAGTGAAGTC+AGG 0.523333 4.2:-5993303 None:intergenic
GTTCTGTTGCCGGCCCAAGA+AGG 0.525623 4.2:+5993778 MS.gene55719:CDS
CTTTCTCTACTGAGTTGTGA+AGG 0.527750 4.2:+5991551 MS.gene55719:CDS
ATTCTCTTGTATGTCAAGCT+CGG 0.532804 4.2:-5992476 None:intergenic
TTCTGTTGCCGGCCCAAGAA+GGG 0.535830 4.2:+5993779 MS.gene55719:CDS
GCTCCAAAGGCCTCATCCAT+AGG 0.536354 4.2:-5993369 None:intergenic
GCCTCAACTCCTCAAGAAAA+GGG 0.537412 4.2:-5991460 None:intergenic
TTGCTGTCTCTGAAGGATGC+CGG 0.538728 4.2:+5993208 MS.gene55719:CDS
AGCCACCCATAAACCAGAAA+GGG 0.542673 4.2:-5992806 None:intergenic
TAGGGGTCATGATGCACAGC+CGG 0.545042 4.2:-5993320 None:intergenic
GGTCTTAACAACTGCTCCAA+AGG 0.546055 4.2:-5993382 None:intergenic
CAGCATCATTTGTCATCTGA+TGG 0.546732 4.2:-5993257 None:intergenic
TTACCTGACGAATGAACCTA+TGG 0.549205 4.2:+5993353 MS.gene55719:CDS
TCCTGCAGATCCCTTTGACG+AGG 0.558084 4.2:+5993152 MS.gene55719:CDS
CACAGTTGAAGACAAGGGAC+TGG 0.558137 4.2:+5993083 MS.gene55719:CDS
ACACGTAGCTCCTCGAGCAA+TGG 0.562903 4.2:-5993126 None:intergenic
GACAAGGGACTGGAAGCTGT+TGG 0.564143 4.2:+5993093 MS.gene55719:CDS
ACGTTTCTCTGACTTCAACT+TGG 0.564927 4.2:+5991379 MS.gene55719:CDS
TGACGAGGGCGTTGTGCACG+GGG 0.568532 4.2:+5993167 MS.gene55719:CDS
AAACTTGGAAACGCTTTCAG+TGG 0.570395 4.2:+5993482 MS.gene55719:CDS
ATGAGTCAATGAGATCACTT+TGG 0.571140 4.2:+5993628 MS.gene55719:CDS
AATGAGATCACTTTGGATGT+CGG 0.575734 4.2:+5993635 MS.gene55719:CDS
AAGCCACCCATAAACCAGAA+AGG 0.576681 4.2:-5992807 None:intergenic
TTGCCGGAAGCAGTGACTTG+GGG 0.577064 4.2:+5993508 MS.gene55719:CDS
GACGAATGAACCTATGGATG+AGG 0.578886 4.2:+5993359 MS.gene55719:CDS
ATTACTTCAACATTCAACCT+CGG 0.585805 4.2:-5993705 None:intergenic
TCATCTGATGGCAAAAGTAG+AGG 0.589318 4.2:-5993245 None:intergenic
TTTCTTTAGTTTGCAAACAG+TGG 0.597043 4.2:+5991237 MS.gene55719:CDS
AAAAGTGCTGCATCGCCGAA+TGG 0.606996 4.2:-5993588 None:intergenic
CAGAGAGTGAGAACAAATGG+AGG 0.612840 4.2:-5993807 None:intergenic
TGCCAAGCTCACATAACTGA+GGG 0.617421 4.2:-5992702 None:intergenic
CGCTTGAGAAACTTGTCGGT+AGG 0.619571 4.2:+5992605 MS.gene55719:CDS
AACTTGGTTCCTGAAAATTG+GGG 0.622806 4.2:+5991395 MS.gene55719:CDS
AGAGAGTGAGAACAAATGGA+GGG 0.623048 4.2:-5993806 None:intergenic
ATCATATTGTCCATTGCTCG+AGG 0.624054 4.2:+5993116 MS.gene55719:CDS
TCCCTATATACTCAAATGCG+AGG 0.631371 4.2:-5993449 None:intergenic
TGTTAGCAAAAGAAAAGCCG+AGG 0.639572 4.2:+5993688 MS.gene55719:CDS
TGTAGACACAGTTGAAGACA+AGG 0.644710 4.2:+5993077 MS.gene55719:CDS
AGACCTGCACTAAACTCCAA+AGG 0.647440 4.2:+5993400 MS.gene55719:CDS
AATGACATCGATGACAAAAG+CGG 0.649581 4.2:+5992496 MS.gene55719:CDS
CAGGTAATCTGGCTGATTAG+GGG 0.650421 4.2:-5993337 None:intergenic
CTGCCAAGCTCACATAACTG+AGG 0.656866 4.2:-5992703 None:intergenic
ACAACGCTGAAAGATTGTCA+AGG 0.689288 4.2:+5991261 MS.gene55719:CDS
GAGAGTGAGAACAAATGGAG+GGG 0.695193 4.2:-5993805 None:intergenic
ACGCTGAAAGATTGTCAAGG+AGG 0.697851 4.2:+5991264 MS.gene55719:CDS
GCCAAGCTCACATAACTGAG+GGG 0.733620 4.2:-5992701 None:intergenic
GTAGACACAGTTGAAGACAA+GGG 0.743765 4.2:+5993078 MS.gene55719:CDS
AAGTTGAAGTCAGAGAAACG+TGG 0.761191 4.2:-5991377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAATGTGATTTAAT+AGG + chr4.2:5992193-5992212 MS.gene55719:intron 10.0%
!! TAATTAAATGTGATTTAATA+GGG + chr4.2:5992194-5992213 MS.gene55719:intron 10.0%
!! ATGTAAATAATTTATGTCAA+CGG - chr4.2:5992011-5992030 None:intergenic 15.0%
!! CAATAAATACTGATATATTT+AGG - chr4.2:5991737-5991756 None:intergenic 15.0%
!! TAAATCAATCTATGAATTAA+TGG - chr4.2:5991935-5991954 None:intergenic 15.0%
!!! AATTCATAGATTGATTTATT+AGG + chr4.2:5991937-5991956 MS.gene55719:intron 15.0%
!!! CTTTTTAAGATTCTTAATTA+AGG + chr4.2:5992069-5992088 MS.gene55719:intron 15.0%
!!! TTTTTTTTAGATTTAGCATA+GGG + chr4.2:5992229-5992248 MS.gene55719:intron 15.0%
!!! TTTTTTTTTAGATTTAGCAT+AGG + chr4.2:5992228-5992247 MS.gene55719:intron 15.0%
!! CATTTAATTATGTAACAATG+AGG - chr4.2:5992184-5992203 None:intergenic 20.0%
!! GCATATATGATTATTAACTT+TGG + chr4.2:5992267-5992286 MS.gene55719:intron 20.0%
!! TATCAATCAATTATAATAGC+CGG - chr4.2:5992113-5992132 None:intergenic 20.0%
!! TTTGAAAATTTGGTATTTCT+TGG + chr4.2:5992412-5992431 MS.gene55719:intron 20.0%
!!! AAAGAATGATGAAAATGTTT+TGG + chr4.2:5993034-5993053 MS.gene55719:intron 20.0%
! ATAAAGAAAATCATACCCAA+AGG - chr4.2:5992969-5992988 None:intergenic 25.0%
! ATCATATATGCAGTACTTAA+AGG - chr4.2:5992258-5992277 None:intergenic 25.0%
! ATTAGGATTCACTAAAATAC+AGG + chr4.2:5991954-5991973 MS.gene55719:intron 25.0%
! CATATCGAGATTTGAAAATT+TGG + chr4.2:5992402-5992421 MS.gene55719:intron 25.0%
! CGATATTTACATCATTGTTT+AGG - chr4.2:5992582-5992601 None:intergenic 25.0%
! GTTGAATGTTGAAGTAATTA+AGG + chr4.2:5993710-5993729 MS.gene55719:CDS 25.0%
! TAAATCTTACTTGCAATTAG+TGG - chr4.2:5991606-5991625 None:intergenic 25.0%
! TGAATCCATAAAAATACTTG+TGG + chr4.2:5992147-5992166 MS.gene55719:intron 25.0%
!!! AAGTTCCACAAGTATTTTTA+TGG - chr4.2:5992155-5992174 None:intergenic 25.0%
!!! CTAAGATTTGTTGTATTGTA+TGG + chr4.2:5991850-5991869 MS.gene55719:intron 25.0%
AGTGTAACACTTCTTATGTT+TGG - chr4.2:5991347-5991366 None:intergenic 30.0%
ATTACTTCAACATTCAACCT+CGG - chr4.2:5993708-5993727 None:intergenic 30.0%
GTTGAAGTAATTAAGGAAGA+AGG + chr4.2:5993717-5993736 MS.gene55719:CDS 30.0%
TACATCCATTCATTGTTACT+TGG - chr4.2:5993665-5993684 None:intergenic 30.0%
TCTGAATATTACATTGATGC+AGG + chr4.2:5992446-5992465 MS.gene55719:intron 30.0%
TTGGAACATCTACATTATAC+AGG + chr4.2:5993053-5993072 MS.gene55719:intron 30.0%
! GACAAGCATTTTTAATGATC+CGG + chr4.2:5992091-5992110 MS.gene55719:intron 30.0%
! GCTTTTTGCACATATACAAT+TGG - chr4.2:5992050-5992069 None:intergenic 30.0%
!! ATAAGAAGTGTTACACTCAA+AGG + chr4.2:5991350-5991369 MS.gene55719:CDS 30.0%
!! TAAGAAGTGTTACACTCAAA+GGG + chr4.2:5991351-5991370 MS.gene55719:CDS 30.0%
!! TGATGAGAGTTTAGAGTTTT+TGG + chr4.2:5991502-5991521 MS.gene55719:CDS 30.0%
!! TTTCTTTAGTTTGCAAACAG+TGG + chr4.2:5991237-5991256 MS.gene55719:CDS 30.0%
AACTTGGTTCCTGAAAATTG+GGG + chr4.2:5991395-5991414 MS.gene55719:CDS 35.0%
AATCTACTTGTCAAGATCTC+AGG - chr4.2:5991323-5991342 None:intergenic 35.0%
AATGACATCGATGACAAAAG+CGG + chr4.2:5992496-5992515 MS.gene55719:CDS 35.0%
AATGAGATCACTTTGGATGT+CGG + chr4.2:5993635-5993654 MS.gene55719:CDS 35.0%
ACCTCGCATTTGAGTATATA+GGG + chr4.2:5993448-5993467 MS.gene55719:CDS 35.0%
AGCTGAGAAAACTTGAGATA+AGG + chr4.2:5993559-5993578 MS.gene55719:CDS 35.0%
ATGAGTCAATGAGATCACTT+TGG + chr4.2:5993628-5993647 MS.gene55719:CDS 35.0%
ATGGATTCAACAAACATGCA+TGG - chr4.2:5992136-5992155 None:intergenic 35.0%
ATTCTCTTGTATGTCAAGCT+CGG - chr4.2:5992479-5992498 None:intergenic 35.0%
CAACTTGGTTCCTGAAAATT+GGG + chr4.2:5991394-5991413 MS.gene55719:CDS 35.0%
CAGAGTATAGAACTTGAAGT+TGG - chr4.2:5992852-5992871 None:intergenic 35.0%
CCAATGATGTAAAGCTTTCT+GGG - chr4.2:5992540-5992559 None:intergenic 35.0%
GCTGAGAAAACTTGAGATAA+GGG + chr4.2:5993560-5993579 MS.gene55719:CDS 35.0%
TATGTTTATCGTTCTGTTGC+CGG + chr4.2:5993768-5993787 MS.gene55719:CDS 35.0%
TCAACTTGGTTCCTGAAAAT+TGG + chr4.2:5991393-5991412 MS.gene55719:CDS 35.0%
TCCAATGATGTAAAGCTTTC+TGG - chr4.2:5992541-5992560 None:intergenic 35.0%
TGCTGATATTCATTCATGGT+TGG + chr4.2:5991418-5991437 MS.gene55719:CDS 35.0%
! ATCTCAAGTTTTCTCAGCTT+CGG - chr4.2:5993558-5993577 None:intergenic 35.0%
! CATCAACTTTTCTCCAGTAA+AGG - chr4.2:5991898-5991917 None:intergenic 35.0%
! TCAAGGAGGAATGTTTTCAT+AGG + chr4.2:5991278-5991297 MS.gene55719:CDS 35.0%
!! GAAGTGTTGAAACAAGTTCT+TGG + chr4.2:5991182-5991201 MS.gene55719:CDS 35.0%
!!! TGAAAAGTACCCTTTTCTTG+AGG + chr4.2:5991451-5991470 MS.gene55719:CDS 35.0%
!!! TGAAAGCGTTTCCAAGTTTT+TGG - chr4.2:5993481-5993500 None:intergenic 35.0%
!!! TTGCGTTGTTTTTCCTTTAC+TGG + chr4.2:5991882-5991901 MS.gene55719:intron 35.0%
AAACTTGGAAACGCTTTCAG+TGG + chr4.2:5993482-5993501 MS.gene55719:CDS 40.0%
AACCTGATACAGAAAGCCTT+TGG - chr4.2:5993419-5993438 None:intergenic 40.0%
AAGAGAATCCTTGTCCTATG+AGG + chr4.2:5991817-5991836 MS.gene55719:intron 40.0%
AAGGAAAAACAACGCAAACC+AGG - chr4.2:5991879-5991898 None:intergenic 40.0%
AAGTTGAAGTCAGAGAAACG+TGG - chr4.2:5991380-5991399 None:intergenic 40.0%
AATCCTTGTCCTATGAGGAT+AGG + chr4.2:5991822-5991841 MS.gene55719:intron 40.0%
ACAACGCTGAAAGATTGTCA+AGG + chr4.2:5991261-5991280 MS.gene55719:CDS 40.0%
ACGTTTCTCTGACTTCAACT+TGG + chr4.2:5991379-5991398 MS.gene55719:CDS 40.0%
AGAGAGTGAGAACAAATGGA+GGG - chr4.2:5993809-5993828 None:intergenic 40.0%
AGTTGTGTGTGAGTTTCAAG+TGG - chr4.2:5991676-5991695 None:intergenic 40.0%
ATCACACTGCTTATGCTTTC+AGG - chr4.2:5992309-5992328 None:intergenic 40.0%
ATCATATTGTCCATTGCTCG+AGG + chr4.2:5993116-5993135 MS.gene55719:CDS 40.0%
CAAGGATTCTCTTCTCTAGT+TGG - chr4.2:5991810-5991829 None:intergenic 40.0%
CAGCATCATTTGTCATCTGA+TGG - chr4.2:5993260-5993279 None:intergenic 40.0%
CCCAGAAAGCTTTACATCAT+TGG + chr4.2:5992537-5992556 MS.gene55719:CDS 40.0%
CTTTCTCTACTGAGTTGTGA+AGG + chr4.2:5991551-5991570 MS.gene55719:CDS 40.0%
GACCTCGCATTTGAGTATAT+AGG + chr4.2:5993447-5993466 MS.gene55719:CDS 40.0%
GACTGCCAAGTAACAATGAA+TGG + chr4.2:5993657-5993676 MS.gene55719:CDS 40.0%
GTAGACACAGTTGAAGACAA+GGG + chr4.2:5993078-5993097 MS.gene55719:CDS 40.0%
TCACACTGCTTATGCTTTCA+GGG - chr4.2:5992308-5992327 None:intergenic 40.0%
TCAGGTAATCTGGCTGATTA+GGG - chr4.2:5993341-5993360 None:intergenic 40.0%
TCATCTGATGGCAAAAGTAG+AGG - chr4.2:5993248-5993267 None:intergenic 40.0%
TCCCTATATACTCAAATGCG+AGG - chr4.2:5993452-5993471 None:intergenic 40.0%
TCTACCGAAAAATGTCCGTA+GGG - chr4.2:5991785-5991804 None:intergenic 40.0%
TGTAGACACAGTTGAAGACA+AGG + chr4.2:5993077-5993096 MS.gene55719:CDS 40.0%
TGTTAGCAAAAGAAAAGCCG+AGG + chr4.2:5993688-5993707 MS.gene55719:CDS 40.0%
TTACCTGACGAATGAACCTA+TGG + chr4.2:5993353-5993372 MS.gene55719:CDS 40.0%
! AGGGAAGTATGCCAAAAACT+TGG + chr4.2:5993467-5993486 MS.gene55719:CDS 40.0%
! ATATCAGCACCCCAATTTTC+AGG - chr4.2:5991407-5991426 None:intergenic 40.0%
! TGTGAAGGATTTAGCACTGA+TGG + chr4.2:5991566-5991585 MS.gene55719:CDS 40.0%
!! AAGAGTATTCACACCCTTTC+TGG + chr4.2:5992793-5992812 MS.gene55719:CDS 40.0%
!! TCACACCCTTTCTGGTTTAT+GGG + chr4.2:5992801-5992820 MS.gene55719:CDS 40.0%
!! TTCACACCCTTTCTGGTTTA+TGG + chr4.2:5992800-5992819 MS.gene55719:CDS 40.0%
!!! GGTTTTATTGCTGTCTCTGA+AGG + chr4.2:5993201-5993220 MS.gene55719:CDS 40.0%
AAGCCACCCATAAACCAGAA+AGG - chr4.2:5992810-5992829 None:intergenic 45.0%
AAGCCTATCCTCATAGGACA+AGG - chr4.2:5991828-5991847 None:intergenic 45.0%
ACGCTGAAAGATTGTCAAGG+AGG + chr4.2:5991264-5991283 MS.gene55719:CDS 45.0%
AGAAGGAAGCGATGATAGTC+AGG + chr4.2:5993734-5993753 MS.gene55719:CDS 45.0%
AGACCTGCACTAAACTCCAA+AGG + chr4.2:5993400-5993419 MS.gene55719:CDS 45.0%
AGCCACCCATAAACCAGAAA+GGG - chr4.2:5992809-5992828 None:intergenic 45.0%
AGCCTCAACTCCTCAAGAAA+AGG - chr4.2:5991464-5991483 None:intergenic 45.0%
CAAGATCCTGGTTTCGAATC+TGG + chr4.2:5991697-5991716 MS.gene55719:intron 45.0%
CAGAGAGTGAGAACAAATGG+AGG - chr4.2:5993810-5993829 None:intergenic 45.0%
CAGGTAATCTGGCTGATTAG+GGG - chr4.2:5993340-5993359 None:intergenic 45.0%
CATCCATAGGTTCATTCGTC+AGG - chr4.2:5993359-5993378 None:intergenic 45.0%
CTCCAAAGGCTTTCTGTATC+AGG + chr4.2:5993414-5993433 MS.gene55719:CDS 45.0%
CTCTACCGAAAAATGTCCGT+AGG - chr4.2:5991786-5991805 None:intergenic 45.0%
CTTCATCCAGATTCGAAACC+AGG - chr4.2:5991706-5991725 None:intergenic 45.0%
GACGAATGAACCTATGGATG+AGG + chr4.2:5993359-5993378 MS.gene55719:CDS 45.0%
GAGAGTGAGAACAAATGGAG+GGG - chr4.2:5993808-5993827 None:intergenic 45.0%
GAGATAAGGGACTGTCCATT+CGG + chr4.2:5993573-5993592 MS.gene55719:CDS 45.0%
GATGCGCTTGAGAAACTTGT+CGG + chr4.2:5992601-5992620 MS.gene55719:CDS 45.0%
GCCTCAACTCCTCAAGAAAA+GGG - chr4.2:5991463-5991482 None:intergenic 45.0%
GGTCTTAACAACTGCTCCAA+AGG - chr4.2:5993385-5993404 None:intergenic 45.0%
GGTTCATTCGTCAGGTAATC+TGG - chr4.2:5993351-5993370 None:intergenic 45.0%
GTCAGGTAATCTGGCTGATT+AGG - chr4.2:5993342-5993361 None:intergenic 45.0%
GTCCTGACTTCACTCATTTC+CGG + chr4.2:5993301-5993320 MS.gene55719:CDS 45.0%
TCCTAATCTTCGACGCCTTT+GGG + chr4.2:5992951-5992970 MS.gene55719:CDS 45.0%
TCGATGACAAAAGCGGTGAT+TGG + chr4.2:5992503-5992522 MS.gene55719:CDS 45.0%
TGCCAAGCTCACATAACTGA+GGG - chr4.2:5992705-5992724 None:intergenic 45.0%
TGTTGTATTGTATGGCTGCC+TGG + chr4.2:5991858-5991877 MS.gene55719:intron 45.0%
TTAGCCAAGCCTATCCTCAT+AGG - chr4.2:5991834-5991853 None:intergenic 45.0%
TTGTCCTATGAGGATAGGCT+TGG + chr4.2:5991827-5991846 MS.gene55719:intron 45.0%
! ACCCTTTTCTTGAGGAGTTG+AGG + chr4.2:5991459-5991478 MS.gene55719:CDS 45.0%
! TGCAGCACTTTTGTCTGGTT+TGG + chr4.2:5993599-5993618 MS.gene55719:CDS 45.0%
!! AAGCCTTTGGAGTTTAGTGC+AGG - chr4.2:5993406-5993425 None:intergenic 45.0%
!! AGGATTTAGCACTGATGGCT+TGG + chr4.2:5991571-5991590 MS.gene55719:CDS 45.0%
!! GGGGTGCTGATATTCATTCA+TGG + chr4.2:5991414-5991433 MS.gene55719:CDS 45.0%
ACCGAAAAATGTCCGTAGGG+TGG - chr4.2:5991782-5991801 None:intergenic 50.0%
AGAGGACGTAGTGAAGCTTC+CGG - chr4.2:5993230-5993249 None:intergenic 50.0%
AGCCGGAAATGAGTGAAGTC+AGG - chr4.2:5993306-5993325 None:intergenic 50.0%
CACACACAACTGCAAGATCC+TGG + chr4.2:5991685-5991704 MS.gene55719:intron 50.0%
CACAGTTGAAGACAAGGGAC+TGG + chr4.2:5993083-5993102 MS.gene55719:CDS 50.0%
CAGTTATGTGAGCTTGGCAG+TGG + chr4.2:5992706-5992725 MS.gene55719:CDS 50.0%
CCGAAAAATGTCCGTAGGGT+GGG - chr4.2:5991781-5991800 None:intergenic 50.0%
CGCTTGAGAAACTTGTCGGT+AGG + chr4.2:5992605-5992624 MS.gene55719:CDS 50.0%
CTGCCAAGCTCACATAACTG+AGG - chr4.2:5992706-5992725 None:intergenic 50.0%
GAACCTATGGATGAGGCCTT+TGG + chr4.2:5993366-5993385 MS.gene55719:CDS 50.0%
GCCAAGCTCACATAACTGAG+GGG - chr4.2:5992704-5992723 None:intergenic 50.0%
GGAGTTGAGGCTCAAGAGAA+TGG + chr4.2:5991472-5991491 MS.gene55719:CDS 50.0%
GTCCTAATCTTCGACGCCTT+TGG + chr4.2:5992950-5992969 MS.gene55719:CDS 50.0%
TAGACTCTAGACCCACCCTA+CGG + chr4.2:5991767-5991786 MS.gene55719:intron 50.0%
TTTGCCGGAAGCAGTGACTT+GGG + chr4.2:5993507-5993526 MS.gene55719:CDS 50.0%
! ACGCTTTCAGTGGCTTTTGC+CGG + chr4.2:5993492-5993511 MS.gene55719:CDS 50.0%
! CCCACCCTACGGACATTTTT+CGG + chr4.2:5991778-5991797 MS.gene55719:intron 50.0%
! TTGCTGTCTCTGAAGGATGC+CGG + chr4.2:5993208-5993227 MS.gene55719:CDS 50.0%
! TTTTGCCGGAAGCAGTGACT+TGG + chr4.2:5993506-5993525 MS.gene55719:CDS 50.0%
!! AAAAGTGCTGCATCGCCGAA+TGG - chr4.2:5993591-5993610 None:intergenic 50.0%
!! ACCCAAAGGCGTCGAAGATT+AGG - chr4.2:5992955-5992974 None:intergenic 50.0%
!! CACCCTTTCTGGTTTATGGG+TGG + chr4.2:5992804-5992823 MS.gene55719:CDS 50.0%
ACACGTAGCTCCTCGAGCAA+TGG - chr4.2:5993129-5993148 None:intergenic 55.0%
CATCCCCAAGTCACTGCTTC+CGG - chr4.2:5993514-5993533 None:intergenic 55.0%
CCTGCAGATCCCTTTGACGA+GGG + chr4.2:5993153-5993172 MS.gene55719:CDS 55.0%
GACAAGGGACTGGAAGCTGT+TGG + chr4.2:5993093-5993112 MS.gene55719:CDS 55.0%
GCCCCTCAGTTATGTGAGCT+TGG + chr4.2:5992700-5992719 MS.gene55719:CDS 55.0%
GCTCCAAAGGCCTCATCCAT+AGG - chr4.2:5993372-5993391 None:intergenic 55.0%
GGGATGCAGTCTGTACTTGC+TGG + chr4.2:5993528-5993547 MS.gene55719:CDS 55.0%
GTGCACGGGGTTACTGAATC+AGG + chr4.2:5993180-5993199 MS.gene55719:CDS 55.0%
TAGGGGTCATGATGCACAGC+CGG - chr4.2:5993323-5993342 None:intergenic 55.0%
TCCTGCAGATCCCTTTGACG+AGG + chr4.2:5993152-5993171 MS.gene55719:CDS 55.0%
TGCACAACGCCCTCGTCAAA+GGG - chr4.2:5993165-5993184 None:intergenic 55.0%
TTCTGTTGCCGGCCCAAGAA+GGG + chr4.2:5993779-5993798 MS.gene55719:CDS 55.0%
TTGCCGGAAGCAGTGACTTG+GGG + chr4.2:5993508-5993527 MS.gene55719:CDS 55.0%
! GGCGATGCAGCACTTTTGTC+TGG + chr4.2:5993594-5993613 MS.gene55719:CDS 55.0%
!! AATGGAGGGGCATCCCTTCT+TGG - chr4.2:5993795-5993814 None:intergenic 55.0%
!! ATGGAGGGGCATCCCTTCTT+GGG - chr4.2:5993794-5993813 None:intergenic 55.0%
!! TTTGACGAGGGCGTTGTGCA+CGG + chr4.2:5993165-5993184 MS.gene55719:CDS 55.0%
CCCTCGTCAAAGGGATCTGC+AGG - chr4.2:5993156-5993175 None:intergenic 60.0%
GTGCACAACGCCCTCGTCAA+AGG - chr4.2:5993166-5993185 None:intergenic 60.0%
GTTCTGTTGCCGGCCCAAGA+AGG + chr4.2:5993778-5993797 MS.gene55719:CDS 60.0%
!! TTGACGAGGGCGTTGTGCAC+GGG + chr4.2:5993166-5993185 MS.gene55719:CDS 60.0%
!! AGGGGCATCCCTTCTTGGGC+CGG - chr4.2:5993790-5993809 None:intergenic 65.0%
!! TGACGAGGGCGTTGTGCACG+GGG + chr4.2:5993167-5993186 MS.gene55719:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 5991155 5993830 5991155 ID=MS.gene55719
chr4.2 mRNA 5991155 5993830 5991155 ID=MS.gene55719.t1;Parent=MS.gene55719
chr4.2 exon 5991155 5991615 5991155 ID=MS.gene55719.t1.exon1;Parent=MS.gene55719.t1
chr4.2 CDS 5991155 5991615 5991155 ID=cds.MS.gene55719.t1;Parent=MS.gene55719.t1
chr4.2 exon 5992468 5992972 5992468 ID=MS.gene55719.t1.exon2;Parent=MS.gene55719.t1
chr4.2 CDS 5992468 5992972 5992468 ID=cds.MS.gene55719.t1;Parent=MS.gene55719.t1
chr4.2 exon 5993075 5993830 5993075 ID=MS.gene55719.t1.exon3;Parent=MS.gene55719.t1
chr4.2 CDS 5993075 5993830 5993075 ID=cds.MS.gene55719.t1;Parent=MS.gene55719.t1
Gene Sequence

>MS.gene55719

ATGGAGGAGTGTAAGAGAGACAAAGATGAAGTGTTGAAACAAGTTCTTGGAACAGTGAAGTCACACAAAGACAGAAATTCAGTTTCTTTAGTTTGCAAACAGTGGTACAACGCTGAAAGATTGTCAAGGAGGAATGTTTTCATAGGTAACTGTTATTCTGTCACTCCTGAGATCTTGACAAGTAGATTTCCAAACATAAGAAGTGTTACACTCAAAGGGAAGCCACGTTTCTCTGACTTCAACTTGGTTCCTGAAAATTGGGGTGCTGATATTCATTCATGGTTGGTTGTTTTTGCTGAAAAGTACCCTTTTCTTGAGGAGTTGAGGCTCAAGAGAATGGTTGTTACTGATGAGAGTTTAGAGTTTTTGGCTTTTTCTTTTCATAATTTCAAAGCACTTTCTCTACTGAGTTGTGAAGGATTTAGCACTGATGGCTTGGCTGCAGTTGCCACTAATTGCAAGTAAGATTTATTTGTCTTCAAACTTTATTTTATGATCTGTACACTAATTGATAAATACCACTTGAAACTCACACACAACTGCAAGATCCTGGTTTCGAATCTGGATGAAGATGTTGAGCCTAAATATATCAGTATTTATTGTCAATTGAGATAGACTCTAGACCCACCCTACGGACATTTTTCGGTAGAGACCAACTAGAGAAGAGAATCCTTGTCCTATGAGGATAGGCTTGGCTAAGATTTGTTGTATTGTATGGCTGCCTGGTTTGCGTTGTTTTTCCTTTACTGGAGAAAAGTTGATGAGAATGACAATTTTCCATTAATTCATAGATTGATTTATTAGGATTCACTAAAATACAGGACATTTATAAATAGAGTTTAATTTTGATATACCGTTGACATAAATTATTTACATTGTCAAGCAATCACAACCAATTGTATATGTGCAAAAAGCTTTTTAAGATTCTTAATTAAGGACAAGCATTTTTAATGATCCGGCTATTATAATTGATTGATACCATGCATGTTTGTTGAATCCATAAAAATACTTGTGGAACTTTAGTTTCCTCATTGTTACATAATTAAATGTGATTTAATAGGGAAACATTTTTATTTTTTTTTAGATTTAGCATAGGGCAACCTTTAAGTACTGCATATATGATTATTAACTTTGGTTCAACAAACTTTTACCCTGAAAGCATAAGCAGTGTGATATTTGTTGATCACATCAATTACACTATTTTGCTAGCATTTTATGAATCTAAAAAACTTCAGTAATGACAACATCATATCGAGATTTGAAAATTTGGTATTTCTTGGATAAATCATCTTCTGAATATTACATTGATGCAGGAATTTAACCGAGCTTGACATACAAGAGAATGACATCGATGACAAAAGCGGTGATTGGTTGAGTTGCTTCCCAGAAAGCTTTACATCATTGGAAGTATTGAACTTTGCTAACCTAAACAATGATGTAAATATCGATGCGCTTGAGAAACTTGTCGGTAGGTGCAAATCTTTGAAGACTTTGAACGTTAACAAAAGCGTAACGCTAGAACAGTTTCAAAGACTTCTTGTTCTTGCCCCTCAGTTATGTGAGCTTGGCAGTGGCTCATTTTCACAAGAGCTGACATGTCAGCAGTATTTAGAGCTCGAAAGCGCTTTCAACAATTGTAAGAGTATTCACACCCTTTCTGGTTTATGGGTGGCTTCAGCTTCAGCACAGTATATCCAACTTCAAGTTCTATACTCTGCATGCACAAATCTGACTTTCTTGAATTTTAGTTATGCTCTTGTTGACAGTGAAGATCTTACTGATCTTCTTATTCACTGTCCTAATCTTCGACGCCTTTGGGTATGATTTTCTTTATCTGCTCTTTATTAAGTTTCATTGATATTGACATTTTAGCAACATAAAAGAATGATGAAAATGTTTTGGAACATCTACATTATACAGGTTGTAGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATATTGTCCATTGCTCGAGGAGCTACGTGTTTTTCCTGCAGATCCCTTTGACGAGGGCGTTGTGCACGGGGTTACTGAATCAGGTTTTATTGCTGTCTCTGAAGGATGCCGGAAGCTTCACTACGTCCTCTACTTTTGCCATCAGATGACAAATGATGCTGTTGCTACTGTTGTGCAAAACTGTCCTGACTTCACTCATTTCCGGCTGTGCATCATGACCCCTAATCAGCCAGATTACCTGACGAATGAACCTATGGATGAGGCCTTTGGAGCAGTTGTTAAGACCTGCACTAAACTCCAAAGGCTTTCTGTATCAGGTTATCTAACTGACCTCGCATTTGAGTATATAGGGAAGTATGCCAAAAACTTGGAAACGCTTTCAGTGGCTTTTGCCGGAAGCAGTGACTTGGGGATGCAGTCTGTACTTGCTGGCTGTCCGAAGCTGAGAAAACTTGAGATAAGGGACTGTCCATTCGGCGATGCAGCACTTTTGTCTGGTTTGGAGAAGTATGAGTCAATGAGATCACTTTGGATGTCGGACTGCCAAGTAACAATGAATGGATGTAGATTGTTAGCAAAAGAAAAGCCGAGGTTGAATGTTGAAGTAATTAAGGAAGAAGGAAGCGATGATAGTCAGGCTGAAAAAGTTTATGTTTATCGTTCTGTTGCCGGCCCAAGAAGGGATGCCCCTCCATTTGTTCTCACTCTCTGA

Protein sequence

>MS.gene55719.t1

MEECKRDKDEVLKQVLGTVKSHKDRNSVSLVCKQWYNAERLSRRNVFIGNCYSVTPEILTSRFPNIRSVTLKGKPRFSDFNLVPENWGADIHSWLVVFAEKYPFLEELRLKRMVVTDESLEFLAFSFHNFKALSLLSCEGFSTDGLAAVATNCKNLTELDIQENDIDDKSGDWLSCFPESFTSLEVLNFANLNNDVNIDALEKLVGRCKSLKTLNVNKSVTLEQFQRLLVLAPQLCELGSGSFSQELTCQQYLELESAFNNCKSIHTLSGLWVASASAQYIQLQVLYSACTNLTFLNFSYALVDSEDLTDLLIHCPNLRRLWVVDTVEDKGLEAVGSYCPLLEELRVFPADPFDEGVVHGVTESGFIAVSEGCRKLHYVLYFCHQMTNDAVATVVQNCPDFTHFRLCIMTPNQPDYLTNEPMDEAFGAVVKTCTKLQRLSVSGYLTDLAFEYIGKYAKNLETLSVAFAGSSDLGMQSVLAGCPKLRKLEIRDCPFGDAALLSGLEKYESMRSLWMSDCQVTMNGCRLLAKEKPRLNVEVIKEEGSDDSQAEKVYVYRSVAGPRRDAPPFVLTL