Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56073.t1 | XP_003607906.1 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.30E-92 | 346.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56073.t1 | Q9SSL1 | 55.5 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 9.7e-49 | 194.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56073.t1 | G7JJZ3 | 97.1 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 4.6e-92 | 346.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene56073 | 0.818483 | 1.91E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene56073 | 0.806413 | 8.33E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene56073 | 0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene56073 | 0.80729 | 5.43E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene56073 | 0.85905 | 5.41E-63 | -1.69E-46 |
| MS.gene052176 | MS.gene56073 | 0.819705 | 1.01E-52 | -1.69E-46 |
| MS.gene052389 | MS.gene56073 | 0.821494 | 3.92E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene56073 | 0.803269 | 3.78E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene56073 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene56073 | 0.860821 | 1.58E-63 | -1.69E-46 |
| MS.gene055701 | MS.gene56073 | 0.811806 | 5.82E-51 | -1.69E-46 |
| MS.gene056087 | MS.gene56073 | 0.807451 | 5.02E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene56073 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene05761 | MS.gene56073 | 0.82773 | 1.33E-54 | -1.69E-46 |
| MS.gene058710 | MS.gene56073 | 0.846642 | 1.91E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene56073 | 0.850238 | 1.93E-60 | -1.69E-46 |
| MS.gene059511 | MS.gene56073 | 0.941431 | 4.21E-101 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56073.t1 | MTR_4g084280 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 6.01e-123 | 343 |
| MS.gene56073.t1 | MTR_1g031650 | 66.871 | 163 | 53 | 1 | 3 | 164 | 4 | 166 | 1.59e-76 | 226 |
| MS.gene56073.t1 | MTR_3g067585 | 54.601 | 163 | 74 | 0 | 1 | 163 | 1 | 163 | 4.46e-64 | 194 |
| MS.gene56073.t1 | MTR_1g031650 | 69.531 | 128 | 39 | 0 | 37 | 164 | 2 | 129 | 4.24e-62 | 188 |
| MS.gene56073.t1 | MTR_8g107340 | 51.220 | 164 | 80 | 0 | 1 | 164 | 17 | 180 | 7.32e-58 | 179 |
| MS.gene56073.t1 | MTR_2g011590 | 51.235 | 162 | 79 | 0 | 3 | 164 | 2 | 163 | 1.75e-57 | 177 |
| MS.gene56073.t1 | MTR_6g069470 | 49.390 | 164 | 83 | 0 | 1 | 164 | 13 | 176 | 9.60e-56 | 174 |
| MS.gene56073.t1 | MTR_8g088320 | 40.000 | 160 | 95 | 1 | 1 | 159 | 161 | 320 | 4.07e-35 | 125 |
| MS.gene56073.t1 | MTR_2g030230 | 38.889 | 162 | 94 | 3 | 1 | 159 | 168 | 327 | 5.29e-32 | 117 |
| MS.gene56073.t1 | MTR_3g017500 | 37.952 | 166 | 94 | 2 | 1 | 161 | 209 | 370 | 7.66e-31 | 115 |
| MS.gene56073.t1 | MTR_8g038400 | 37.654 | 162 | 100 | 1 | 1 | 161 | 206 | 367 | 1.72e-30 | 114 |
| MS.gene56073.t1 | MTR_3g017500 | 37.952 | 166 | 94 | 2 | 1 | 161 | 239 | 400 | 2.19e-30 | 114 |
| MS.gene56073.t1 | MTR_2g027100 | 38.158 | 152 | 92 | 1 | 1 | 150 | 1 | 152 | 2.11e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56073.t1 | AT1G70810 | 55.488 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 2.49e-63 | 192 |
| MS.gene56073.t1 | AT1G48590 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.16e-61 | 188 |
| MS.gene56073.t1 | AT1G48590 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.16e-61 | 188 |
| MS.gene56073.t1 | AT1G48590 | 55.090 | 167 | 72 | 1 | 1 | 167 | 37 | 200 | 1.41e-61 | 189 |
| MS.gene56073.t1 | AT1G70790 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.61e-60 | 184 |
| MS.gene56073.t1 | AT1G70790 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.61e-60 | 184 |
| MS.gene56073.t1 | AT1G70790 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.61e-60 | 184 |
| MS.gene56073.t1 | AT3G17980 | 51.829 | 164 | 79 | 0 | 1 | 164 | 13 | 176 | 1.29e-58 | 181 |
| MS.gene56073.t1 | AT1G23140 | 51.852 | 162 | 78 | 0 | 1 | 162 | 1 | 162 | 3.19e-58 | 179 |
| MS.gene56073.t1 | AT1G73580 | 48.780 | 164 | 84 | 0 | 1 | 164 | 4 | 167 | 5.68e-58 | 179 |
| MS.gene56073.t1 | AT2G01540 | 53.659 | 164 | 69 | 2 | 5 | 166 | 6 | 164 | 1.10e-57 | 179 |
| MS.gene56073.t1 | AT1G70800 | 50.955 | 157 | 77 | 0 | 1 | 157 | 10 | 166 | 2.88e-55 | 172 |
| MS.gene56073.t1 | AT1G66360 | 45.402 | 174 | 93 | 1 | 1 | 172 | 1 | 174 | 2.79e-53 | 167 |
| MS.gene56073.t1 | AT5G37740 | 46.707 | 167 | 86 | 1 | 1 | 164 | 1 | 167 | 1.24e-51 | 163 |
| MS.gene56073.t1 | AT5G37740 | 44.068 | 177 | 86 | 2 | 1 | 164 | 1 | 177 | 3.37e-48 | 154 |
| MS.gene56073.t1 | AT1G70790 | 55.385 | 130 | 56 | 1 | 39 | 166 | 3 | 132 | 3.51e-46 | 148 |
| MS.gene56073.t1 | AT1G48590 | 45.509 | 167 | 56 | 2 | 1 | 167 | 37 | 168 | 3.10e-43 | 141 |
| MS.gene56073.t1 | AT4G05330 | 41.875 | 160 | 88 | 3 | 1 | 157 | 140 | 297 | 2.75e-34 | 122 |
| MS.gene56073.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene56073.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene56073.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene56073.t1 | AT4G21160 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.00e-33 | 122 |
| MS.gene56073.t1 | AT4G05330 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.01e-33 | 122 |
| MS.gene56073.t1 | AT4G05330 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.01e-33 | 122 |
| MS.gene56073.t1 | AT3G07940 | 39.506 | 162 | 97 | 1 | 1 | 161 | 224 | 385 | 2.78e-32 | 119 |
| MS.gene56073.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
| MS.gene56073.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
| MS.gene56073.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
| MS.gene56073.t1 | AT5G47710 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.86e-31 | 111 |
Find 36 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCTTAAACTCATTTCT+TGG | 0.237962 | 4.4:-28166364 | None:intergenic |
| TTTCACTGTGGACGACAAAA+TGG | 0.248123 | 4.4:+28166187 | MS.gene56073:CDS |
| GTCAGTTCTTCATTCCATTC+AGG | 0.282274 | 4.4:-28165353 | None:intergenic |
| ATCTTCACACATTGGAGATA+TGG | 0.313339 | 4.4:-28166233 | None:intergenic |
| GTTTCGATGGCAAACATTCT+AGG | 0.356912 | 4.4:+28164963 | None:intergenic |
| GCTAGGCAATTAGTCGTATC+TGG | 0.362744 | 4.4:-28166302 | None:intergenic |
| GTCTTGACTACATGTCCATC+TGG | 0.383427 | 4.4:-28166272 | None:intergenic |
| CTCGGATAAGCCTTTGCCTT+CGG | 0.389439 | 4.4:-28166444 | None:intergenic |
| TCCATGGTGACAAGAACATA+AGG | 0.466228 | 4.4:-28165050 | None:intergenic |
| CCATACGCAGCTACTCTCTT+CGG | 0.489124 | 4.4:-28166324 | None:intergenic |
| CTAACTAACTTGTTCTTCCA+TGG | 0.492512 | 4.4:-28165066 | None:intergenic |
| AGTAGCTGCGTATGGAGAGA+TGG | 0.493455 | 4.4:+28166332 | MS.gene56073:CDS |
| AAGATAACTGCCATCCTGAA+TGG | 0.495110 | 4.4:+28165339 | MS.gene56073:CDS |
| TGTTAACACACCAATACATC+TGG | 0.500731 | 4.4:+28165391 | MS.gene56073:CDS |
| TTCACTGTGGACGACAAAAT+GGG | 0.505157 | 4.4:+28166188 | MS.gene56073:CDS |
| ATATCTCCAATGTGTGAAGA+TGG | 0.506001 | 4.4:+28166235 | MS.gene56073:CDS |
| TGAGTACTGACCAGATGTAT+TGG | 0.524936 | 4.4:-28165401 | None:intergenic |
| TATCTCCAATGTGTGAAGAT+GGG | 0.525049 | 4.4:+28166236 | MS.gene56073:CDS |
| CCGAAGAGAGTAGCTGCGTA+TGG | 0.539890 | 4.4:+28166324 | MS.gene56073:CDS |
| GACAAGAACATAAGGGTCGC+TGG | 0.578982 | 4.4:-28165042 | None:intergenic |
| AGATTGAGAAATGTTGACTC+TGG | 0.584076 | 4.4:+28166380 | MS.gene56073:CDS |
| CCCTTATGTTCTTGTCACCA+TGG | 0.587591 | 4.4:+28165049 | MS.gene56073:CDS |
| CCATGGTGACAAGAACATAA+GGG | 0.590675 | 4.4:-28165049 | None:intergenic |
| CGCAGCTACTCTCTTCGGCT+AGG | 0.597984 | 4.4:-28166319 | None:intergenic |
| GTTACAGAATCCGAAGGCAA+AGG | 0.605128 | 4.4:+28166434 | MS.gene56073:CDS |
| AAGTACTAGTCGAAATTGAG+TGG | 0.607422 | 4.4:+28166405 | MS.gene56073:CDS |
| TCTTGACTACATGTCCATCT+GGG | 0.611492 | 4.4:-28166271 | None:intergenic |
| GGGTTGAGCGATCTCCCAGA+TGG | 0.612527 | 4.4:+28166257 | MS.gene56073:CDS |
| GTTCTTCATTCCATTCAGGA+TGG | 0.627122 | 4.4:-28165349 | None:intergenic |
| ATCTCCAATGTGTGAAGATG+GGG | 0.633945 | 4.4:+28166237 | MS.gene56073:CDS |
| TCAACCCCATCTTCACACAT+TGG | 0.658196 | 4.4:-28166241 | None:intergenic |
| CGACAAAGACACTTTCACTG+TGG | 0.661032 | 4.4:+28166175 | MS.gene56073:CDS |
| GTACTCCTAAAACTCAACCT+CGG | 0.669415 | 4.4:-28166462 | None:intergenic |
| ATTGATGTTACAGAATCCGA+AGG | 0.687927 | 4.4:+28166428 | MS.gene56073:CDS |
| CGAAGGCAAAGGCTTATCCG+AGG | 0.695987 | 4.4:+28166445 | MS.gene56073:CDS |
| TCGCTGGTACGAGAATCATG+AGG | 0.744769 | 4.4:-28165026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAAAGGAAAAA+TGG | + | chr4.4:28165469-28165488 | MS.gene56073:intron | 10.0% |
| !! | AAATAAATAAAAGGAAAAAT+GGG | + | chr4.4:28165470-28165489 | MS.gene56073:intron | 10.0% |
| !! | CAAAAGAGAAAATAAATAAA+AGG | + | chr4.4:28165461-28165480 | MS.gene56073:intron | 15.0% |
| !! | TTATGATATGTTACTATAAA+TGG | + | chr4.4:28165289-28165308 | MS.gene56073:intron | 15.0% |
| !! | TTTGAATTTAAATTAACCAT+AGG | + | chr4.4:28165849-28165868 | MS.gene56073:intron | 15.0% |
| !!! | AATCTTAGAAATTTTATCTT+AGG | - | chr4.4:28165717-28165736 | None:intergenic | 15.0% |
| !!! | ATCTTAGAAATTTTATCTTA+GGG | - | chr4.4:28165716-28165735 | None:intergenic | 15.0% |
| !!! | TTATCTTAGAAATTTTATCT+CGG | - | chr4.4:28165687-28165706 | None:intergenic | 15.0% |
| !! | ATAGTAGTCTAATAAATTAG+AGG | - | chr4.4:28165549-28165568 | None:intergenic | 20.0% |
| !!! | ATCAACATAAAATACTGATT+TGG | - | chr4.4:28165152-28165171 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAACGAAAAAAA+CGG | - | chr4.4:28166096-28166115 | None:intergenic | 20.0% |
| ! | AAATTAACCATAGGATCAAA+GGG | + | chr4.4:28165858-28165877 | MS.gene56073:intron | 25.0% |
| ! | ACCACCAACAATTTAATATT+AGG | - | chr4.4:28166123-28166142 | None:intergenic | 25.0% |
| ! | ATGAGAATCACAAACAAATA+CGG | + | chr4.4:28166001-28166020 | MS.gene56073:intron | 25.0% |
| ! | TAAATTAACCATAGGATCAA+AGG | + | chr4.4:28165857-28165876 | MS.gene56073:intron | 25.0% |
| ! | TCAATCTTAAACTCATTTCT+TGG | - | chr4.4:28166367-28166386 | None:intergenic | 25.0% |
| ! | TCTAAGAACTGATTGAAATT+TGG | + | chr4.4:28165173-28165192 | MS.gene56073:intron | 25.0% |
| !! | ACTAAGATCTTTCTTTTTAC+TGG | + | chr4.4:28165232-28165251 | MS.gene56073:intron | 25.0% |
| !!! | AATTTTTTATGCGTTTCCTT+TGG | + | chr4.4:28165590-28165609 | MS.gene56073:intron | 25.0% |
| AAGTAATGTAGCCTAACAAA+TGG | + | chr4.4:28165949-28165968 | MS.gene56073:intron | 30.0% | |
| ATCACACAAGTATAAACCAA+AGG | - | chr4.4:28165609-28165628 | None:intergenic | 30.0% | |
| ATCAGACTTCGTATCAAAAA+AGG | + | chr4.4:28164990-28165009 | MS.gene56073:CDS | 30.0% | |
| CGAGCCTAATATTAAATTGT+TGG | + | chr4.4:28166116-28166135 | MS.gene56073:intron | 30.0% | |
| CTCAGTTGAAGATAAGTTTA+AGG | - | chr4.4:28165748-28165767 | None:intergenic | 30.0% | |
| GCCTAATATTAAATTGTTGG+TGG | + | chr4.4:28166119-28166138 | MS.gene56073:intron | 30.0% | |
| TGGTTTATACTTGTGTGATT+TGG | + | chr4.4:28165610-28165629 | MS.gene56073:intron | 30.0% | |
| TGTGATTTAAGCCATTTGTT+AGG | - | chr4.4:28165963-28165982 | None:intergenic | 30.0% | |
| TTCTGCAACTTAAACAAAGT+TGG | - | chr4.4:28165431-28165450 | None:intergenic | 30.0% | |
| AACTGAGTTCATCACAAACT+TGG | + | chr4.4:28165881-28165900 | MS.gene56073:intron | 35.0% | |
| AAGTACTAGTCGAAATTGAG+TGG | + | chr4.4:28166405-28166424 | MS.gene56073:CDS | 35.0% | |
| ATATCTCCAATGTGTGAAGA+TGG | + | chr4.4:28166235-28166254 | MS.gene56073:CDS | 35.0% | |
| ATCTTCACACATTGGAGATA+TGG | - | chr4.4:28166236-28166255 | None:intergenic | 35.0% | |
| ATTGATGTTACAGAATCCGA+AGG | + | chr4.4:28166428-28166447 | MS.gene56073:CDS | 35.0% | |
| CATATCGTTGTCCAAAAACT+TGG | + | chr4.4:28165796-28165815 | MS.gene56073:intron | 35.0% | |
| TATCTCCAATGTGTGAAGAT+GGG | + | chr4.4:28166236-28166255 | MS.gene56073:CDS | 35.0% | |
| TGTTAACACACCAATACATC+TGG | + | chr4.4:28165391-28165410 | MS.gene56073:CDS | 35.0% | |
| !! | AGATTGAGAAATGTTGACTC+TGG | + | chr4.4:28166380-28166399 | MS.gene56073:CDS | 35.0% |
| !! | CAAGTTTTTGGACAACGATA+TGG | - | chr4.4:28165798-28165817 | None:intergenic | 35.0% |
| !! | CTAACTAACTTGTTCTTCCA+TGG | - | chr4.4:28165069-28165088 | None:intergenic | 35.0% |
| AAGATAACTGCCATCCTGAA+TGG | + | chr4.4:28165339-28165358 | MS.gene56073:CDS | 40.0% | |
| ATACGGCTGATGCATTGTAT+TGG | + | chr4.4:28166018-28166037 | MS.gene56073:intron | 40.0% | |
| ATCTCCAATGTGTGAAGATG+GGG | + | chr4.4:28166237-28166256 | MS.gene56073:CDS | 40.0% | |
| CCATGGTGACAAGAACATAA+GGG | - | chr4.4:28165052-28165071 | None:intergenic | 40.0% | |
| GATGTTGTAGCCTAGATGAA+GGG | + | chr4.4:28166060-28166079 | MS.gene56073:intron | 40.0% | |
| GTCAGTTCTTCATTCCATTC+AGG | - | chr4.4:28165356-28165375 | None:intergenic | 40.0% | |
| GTTCATCACAAACTTGGTTG+CGG | + | chr4.4:28165887-28165906 | MS.gene56073:intron | 40.0% | |
| GTTCTTCATTCCATTCAGGA+TGG | - | chr4.4:28165352-28165371 | None:intergenic | 40.0% | |
| TCCATGGTGACAAGAACATA+AGG | - | chr4.4:28165053-28165072 | None:intergenic | 40.0% | |
| TCTTGACTACATGTCCATCT+GGG | - | chr4.4:28166274-28166293 | None:intergenic | 40.0% | |
| TGATGTTGTAGCCTAGATGA+AGG | + | chr4.4:28166059-28166078 | MS.gene56073:intron | 40.0% | |
| TTCACTGTGGACGACAAAAT+GGG | + | chr4.4:28166188-28166207 | MS.gene56073:CDS | 40.0% | |
| TTTCACTGTGGACGACAAAA+TGG | + | chr4.4:28166187-28166206 | MS.gene56073:CDS | 40.0% | |
| !! | TGAGTACTGACCAGATGTAT+TGG | - | chr4.4:28165404-28165423 | None:intergenic | 40.0% |
| CCCTTATGTTCTTGTCACCA+TGG | + | chr4.4:28165049-28165068 | MS.gene56073:CDS | 45.0% | |
| CGACAAAGACACTTTCACTG+TGG | + | chr4.4:28166175-28166194 | MS.gene56073:CDS | 45.0% | |
| CTCAGTTCCCTTTGATCCTA+TGG | - | chr4.4:28165868-28165887 | None:intergenic | 45.0% | |
| GCTAGGCAATTAGTCGTATC+TGG | - | chr4.4:28166305-28166324 | None:intergenic | 45.0% | |
| GTCTTGACTACATGTCCATC+TGG | - | chr4.4:28166275-28166294 | None:intergenic | 45.0% | |
| GTTACAGAATCCGAAGGCAA+AGG | + | chr4.4:28166434-28166453 | MS.gene56073:CDS | 45.0% | |
| TCAACCCCATCTTCACACAT+TGG | - | chr4.4:28166244-28166263 | None:intergenic | 45.0% | |
| ! | GTAGACTCTCGCCAAGTTTT+TGG | - | chr4.4:28165810-28165829 | None:intergenic | 45.0% |
| AGTAGCTGCGTATGGAGAGA+TGG | + | chr4.4:28166332-28166351 | MS.gene56073:CDS | 50.0% | |
| CCATACGCAGCTACTCTCTT+CGG | - | chr4.4:28166327-28166346 | None:intergenic | 50.0% | |
| CTCGGATAAGCCTTTGCCTT+CGG | - | chr4.4:28166447-28166466 | None:intergenic | 50.0% | |
| GACAAGAACATAAGGGTCGC+TGG | - | chr4.4:28165045-28165064 | None:intergenic | 50.0% | |
| TCGCTGGTACGAGAATCATG+AGG | - | chr4.4:28165029-28165048 | None:intergenic | 50.0% | |
| TCTGTGTGCACCCTTCATCT+AGG | - | chr4.4:28166073-28166092 | None:intergenic | 50.0% | |
| CCGAAGAGAGTAGCTGCGTA+TGG | + | chr4.4:28166324-28166343 | MS.gene56073:CDS | 55.0% | |
| CGAAGGCAAAGGCTTATCCG+AGG | + | chr4.4:28166445-28166464 | MS.gene56073:CDS | 55.0% | |
| CGCAGCTACTCTCTTCGGCT+AGG | - | chr4.4:28166322-28166341 | None:intergenic | 60.0% | |
| GGGTTGAGCGATCTCCCAGA+TGG | + | chr4.4:28166257-28166276 | MS.gene56073:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28164969 | 28166478 | 28164969 | ID=MS.gene56073 |
| chr4.4 | mRNA | 28164969 | 28166478 | 28164969 | ID=MS.gene56073.t1;Parent=MS.gene56073 |
| chr4.4 | exon | 28164969 | 28165079 | 28164969 | ID=MS.gene56073.t1.exon1;Parent=MS.gene56073.t1 |
| chr4.4 | CDS | 28164969 | 28165079 | 28164969 | ID=cds.MS.gene56073.t1;Parent=MS.gene56073.t1 |
| chr4.4 | exon | 28165317 | 28165412 | 28165317 | ID=MS.gene56073.t1.exon2;Parent=MS.gene56073.t1 |
| chr4.4 | CDS | 28165317 | 28165412 | 28165317 | ID=cds.MS.gene56073.t1;Parent=MS.gene56073.t1 |
| chr4.4 | exon | 28166167 | 28166478 | 28166167 | ID=MS.gene56073.t1.exon3;Parent=MS.gene56073.t1 |
| chr4.4 | CDS | 28166167 | 28166478 | 28166167 | ID=cds.MS.gene56073.t1;Parent=MS.gene56073.t1 |
| Gene Sequence |
| Protein sequence |
