Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57786.t1 | XP_003610314.1 | 99.2 | 265 | 2 | 0 | 1 | 265 | 22 | 286 | 2.10E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57786.t1 | Q8RWS9 | 77.7 | 264 | 59 | 0 | 2 | 265 | 12 | 275 | 3.0e-105 | 382.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57786.t1 | G7JGP4 | 99.2 | 265 | 2 | 0 | 1 | 265 | 22 | 286 | 1.5e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050359 | MS.gene57786 | 0.806619 | 7.53E-50 | -1.69E-46 |
| MS.gene050361 | MS.gene57786 | 0.856907 | 2.34E-62 | -1.69E-46 |
| MS.gene050414 | MS.gene57786 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene050646 | MS.gene57786 | 0.826555 | 2.54E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene57786 | 0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene57786 | 0.821746 | 3.43E-53 | -1.69E-46 |
| MS.gene052242 | MS.gene57786 | -0.812335 | 4.47E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene57786 | 0.819443 | 1.16E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene57786 | 0.823609 | 1.26E-53 | -1.69E-46 |
| MS.gene052675 | MS.gene57786 | 0.831454 | 1.65E-55 | -1.69E-46 |
| MS.gene052677 | MS.gene57786 | 0.835772 | 1.38E-56 | -1.69E-46 |
| MS.gene052776 | MS.gene57786 | 0.810822 | 9.52E-51 | -1.69E-46 |
| MS.gene052994 | MS.gene57786 | 0.827611 | 1.42E-54 | -1.69E-46 |
| MS.gene053486 | MS.gene57786 | 0.817257 | 3.62E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene57786 | 0.805321 | 1.41E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene57786 | 0.832611 | 8.57E-56 | -1.69E-46 |
| MS.gene056507 | MS.gene57786 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene57786 | 0.809948 | 1.47E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene57786 | 0.813582 | 2.38E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene57786 | 0.852749 | 3.76E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATCATCTCGTGTCTT+TGG | 0.178515 | 8.4:-3322648 | MS.gene57786:CDS |
| CTCTTAAGTTCTGAAGTTAA+TGG | 0.232977 | 8.4:+3321561 | None:intergenic |
| CTCCATCATCTCGTGTCTTT+GGG | 0.266985 | 8.4:-3322647 | MS.gene57786:CDS |
| TCTGAAGGACTGAAATTAAT+TGG | 0.268732 | 8.4:-3322969 | MS.gene57786:CDS |
| TCAGACACTTTAAGATCTTC+TGG | 0.270701 | 8.4:+3322909 | None:intergenic |
| CAATGTAAGCCGTGCGAAAT+TGG | 0.274977 | 8.4:+3322670 | None:intergenic |
| GATGTCAGAGTTACAAAATC+TGG | 0.296654 | 8.4:-3323074 | MS.gene57786:CDS |
| CAATGATGAATTACACTGTC+TGG | 0.350794 | 8.4:-3322772 | MS.gene57786:CDS |
| AGCACCCGCCCATGCAGTTT+CGG | 0.362208 | 8.4:+3321521 | None:intergenic |
| TGACTATTATTGCCAACTTT+CGG | 0.399473 | 8.4:+3322742 | None:intergenic |
| ATCATCTCGTGTCTTTGGGC+GGG | 0.405515 | 8.4:-3322643 | MS.gene57786:CDS |
| CTTGTAATCAGATTGTTGTT+TGG | 0.406927 | 8.4:-3321686 | MS.gene57786:intron |
| GGTACCATTCGAAGAAATCT+AGG | 0.424271 | 8.4:+3321582 | None:intergenic |
| ATCTGTGTTGCCAGTACCAC+AGG | 0.445249 | 8.4:-3322550 | MS.gene57786:intron |
| CGCCCAAAGACACGAGATGA+TGG | 0.455061 | 8.4:+3322645 | None:intergenic |
| GTGTCTTTGCCGAAACTGCA+TGG | 0.456842 | 8.4:-3321530 | MS.gene57786:CDS |
| TGCTTTCTATTTGCTAAACA+TGG | 0.461201 | 8.4:-3322697 | MS.gene57786:CDS |
| AAATTAATTGGTCGATCACT+TGG | 0.464219 | 8.4:-3322957 | MS.gene57786:CDS |
| CATCATCTCGTGTCTTTGGG+CGG | 0.483109 | 8.4:-3322644 | MS.gene57786:CDS |
| TCATCTCGTGTCTTTGGGCG+GGG | 0.485159 | 8.4:-3322642 | MS.gene57786:CDS |
| AATTGGTCGATCACTTGGAC+TGG | 0.493849 | 8.4:-3322952 | MS.gene57786:CDS |
| TTGGTCGATCACTTGGACTG+GGG | 0.495877 | 8.4:-3322950 | MS.gene57786:CDS |
| GGGCGAGCTTGTGATAGATT+CGG | 0.504640 | 8.4:-3322622 | MS.gene57786:CDS |
| TAGCAAATAGAAAGCATCAA+TGG | 0.505414 | 8.4:+3322704 | None:intergenic |
| TCAGAACTTAAGAGAACAGC+TGG | 0.509746 | 8.4:-3321552 | MS.gene57786:CDS |
| ATTGGTCGATCACTTGGACT+GGG | 0.525084 | 8.4:-3322951 | MS.gene57786:CDS |
| AAATTAAACCATGGTAGTCA+TGG | 0.526709 | 8.4:-3323038 | MS.gene57786:CDS |
| CTTTGCCGAAACTGCATGGG+CGG | 0.533622 | 8.4:-3321526 | MS.gene57786:CDS |
| GGAATGAGAAAGGGATCTGA+AGG | 0.534084 | 8.4:-3322984 | MS.gene57786:CDS |
| TTGTTTGGAGATTTCTTCAG+AGG | 0.547801 | 8.4:-3321671 | MS.gene57786:CDS |
| TGTCTTTGCCGAAACTGCAT+GGG | 0.548973 | 8.4:-3321529 | MS.gene57786:CDS |
| ATGGAAGCAGCACAACCTCT+AGG | 0.556003 | 8.4:-3323019 | MS.gene57786:CDS |
| TGTAATTCATCATTGATGAC+AGG | 0.556688 | 8.4:+3322780 | None:intergenic |
| AATGATGAATTACACTGTCT+GGG | 0.563593 | 8.4:-3322771 | MS.gene57786:CDS |
| AGCATCAATGGCTGTCCTCA+AGG | 0.567403 | 8.4:+3322716 | None:intergenic |
| ATATCGTCGCAAGTATCGCT+TGG | 0.567803 | 8.4:+3322590 | None:intergenic |
| GTGGTACTGGCAACACAGAT+AGG | 0.568795 | 8.4:+3322553 | None:intergenic |
| TATTCCTAGATTTCTTCGAA+TGG | 0.576328 | 8.4:-3321586 | MS.gene57786:CDS |
| TTTGCCGAAACTGCATGGGC+GGG | 0.583820 | 8.4:-3321525 | MS.gene57786:CDS |
| TGGTCGATCACTTGGACTGG+GGG | 0.590891 | 8.4:-3322949 | MS.gene57786:CDS |
| CATGGCTCTCCAATTTCGCA+CGG | 0.593225 | 8.4:-3322679 | MS.gene57786:CDS |
| TGCTGCTTCCATGACTACCA+TGG | 0.616363 | 8.4:+3323030 | None:intergenic |
| TCTGGGTATAGACCGAAAGT+TGG | 0.620416 | 8.4:-3322754 | MS.gene57786:CDS |
| AGTATTGATAAATTAAACCA+TGG | 0.625061 | 8.4:-3323047 | MS.gene57786:CDS |
| TGATGTACTAGCAACAAAGC+AGG | 0.625485 | 8.4:-3321637 | MS.gene57786:CDS |
| CAATAATAGTCACCACCTTG+AGG | 0.647111 | 8.4:-3322731 | MS.gene57786:CDS |
| AAGCAAGATAATGAACAGCA+AGG | 0.671349 | 8.4:+3321614 | None:intergenic |
| ATCAATGGCTGTCCTCAAGG+TGG | 0.685135 | 8.4:+3322719 | None:intergenic |
| AAACAGTGGATCCACAAACA+CGG | 0.686841 | 8.4:+3322812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTATAAATTTTTCTAATA+TGG | - | chr8.4:3322466-3322485 | MS.gene57786:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTTG+GGG | - | chr8.4:3322248-3322267 | MS.gene57786:intron | 10.0% |
| !! | AAAATTATTGAGCTAAAAAT+AGG | + | chr8.4:3322550-3322569 | None:intergenic | 15.0% |
| !! | AGAATATAAAAAGAAAACAA+AGG | + | chr8.4:3322892-3322911 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTTTTTGG+GGG | - | chr8.4:3322249-3322268 | MS.gene57786:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTTGGG+GGG | - | chr8.4:3322250-3322269 | MS.gene57786:intron | 15.0% |
| !! | AAGAATAAGTGCAATAAAAT+TGG | - | chr8.4:3322326-3322345 | MS.gene57786:intron | 20.0% |
| !! | ATAAGAGTAAAAATTTGTCT+TGG | + | chr8.4:3321731-3321750 | None:intergenic | 20.0% |
| !! | TAAGAGTAAAAATTTGTCTT+GGG | + | chr8.4:3321730-3321749 | None:intergenic | 20.0% |
| !! | TTAAAATTACAGTAGCAATA+AGG | + | chr8.4:3322844-3322863 | None:intergenic | 20.0% |
| !! | TTTAAAAAAGGAATGAGAAA+GGG | - | chr8.4:3321603-3321622 | MS.gene57786:CDS | 20.0% |
| !!! | AAGACAAATTTTTACTCTTA+TGG | - | chr8.4:3321730-3321749 | MS.gene57786:intron | 20.0% |
| !!! | AAGTAAGAAAGAAGTATTTT+TGG | + | chr8.4:3322774-3322793 | None:intergenic | 20.0% |
| !!! | AGTATTGATAAATTAAACCA+TGG | - | chr8.4:3321549-3321568 | MS.gene57786:CDS | 20.0% |
| !!! | ATTTGAAACTATTGAAATTG+GGG | - | chr8.4:3322439-3322458 | MS.gene57786:intron | 20.0% |
| !!! | GATTTGAAACTATTGAAATT+GGG | - | chr8.4:3322438-3322457 | MS.gene57786:intron | 20.0% |
| !!! | TAGTATAAATGATGCTTTTT+GGG | - | chr8.4:3322599-3322618 | MS.gene57786:CDS | 20.0% |
| !!! | TGATTTGAAACTATTGAAAT+TGG | - | chr8.4:3322437-3322456 | MS.gene57786:intron | 20.0% |
| !!! | TTAGTATAAATGATGCTTTT+TGG | - | chr8.4:3322598-3322617 | MS.gene57786:CDS | 20.0% |
| !!! | TTATTGCTACTGTAATTTTA+AGG | - | chr8.4:3322843-3322862 | MS.gene57786:CDS | 20.0% |
| !!! | TTTTAAAAAAGGAATGAGAA+AGG | - | chr8.4:3321602-3321621 | MS.gene57786:CDS | 20.0% |
| !!! | TTTTTTTTTTTTTTTTGGGG+GGG | - | chr8.4:3322251-3322270 | MS.gene57786:intron | 20.0% |
| ! | AAGAGTAAAAATTTGTCTTG+GGG | + | chr8.4:3321729-3321748 | None:intergenic | 25.0% |
| ! | AATCGTACAGTATTTACAAA+AGG | + | chr8.4:3322103-3322122 | None:intergenic | 25.0% |
| ! | AGTTTCAAATCAAAGAAAAC+AGG | + | chr8.4:3322429-3322448 | None:intergenic | 25.0% |
| ! | ATAAAAAGAAAACAAAGGCA+AGG | + | chr8.4:3322887-3322906 | None:intergenic | 25.0% |
| ! | GGAGAATATAATATCATACT+TGG | - | chr8.4:3322347-3322366 | MS.gene57786:intron | 25.0% |
| ! | TAAAAAGAAAACAAAGGCAA+GGG | + | chr8.4:3322886-3322905 | None:intergenic | 25.0% |
| !!! | CTGTACGATTATTTTTTCTT+CGG | - | chr8.4:3322113-3322132 | MS.gene57786:intron | 25.0% |
| !!! | TTTTTTTTTTTTTTTGGGGG+GGG | - | chr8.4:3322252-3322271 | MS.gene57786:intron | 25.0% |
| AAATTAAACCATGGTAGTCA+TGG | - | chr8.4:3321558-3321577 | MS.gene57786:CDS | 30.0% | |
| AAATTAATTGGTCGATCACT+TGG | - | chr8.4:3321639-3321658 | MS.gene57786:CDS | 30.0% | |
| AAGATAACAGAGAACATTGT+TGG | + | chr8.4:3322165-3322184 | None:intergenic | 30.0% | |
| AATGATGAATTACACTGTCT+GGG | - | chr8.4:3321825-3321844 | MS.gene57786:intron | 30.0% | |
| ACAGGAAGATAAAAAAACAG+TGG | + | chr8.4:3321801-3321820 | None:intergenic | 30.0% | |
| TATTCCTAGATTTCTTCGAA+TGG | - | chr8.4:3323010-3323029 | MS.gene57786:CDS | 30.0% | |
| TCTGAAGGACTGAAATTAAT+TGG | - | chr8.4:3321627-3321646 | MS.gene57786:CDS | 30.0% | |
| TGACTATTATTGCCAACTTT+CGG | + | chr8.4:3321857-3321876 | None:intergenic | 30.0% | |
| ! | ATATACTGAACCCTTATTTC+GGG | - | chr8.4:3322630-3322649 | MS.gene57786:CDS | 30.0% |
| ! | CTTGTAATCAGATTGTTGTT+TGG | - | chr8.4:3322910-3322929 | MS.gene57786:CDS | 30.0% |
| ! | GATATACTGAACCCTTATTT+CGG | - | chr8.4:3322629-3322648 | MS.gene57786:CDS | 30.0% |
| ! | GCTCAATAATTTTTGTTAGC+TGG | - | chr8.4:3322557-3322576 | MS.gene57786:CDS | 30.0% |
| ! | TGCTTTCTATTTGCTAAACA+TGG | - | chr8.4:3321899-3321918 | MS.gene57786:intron | 30.0% |
| ! | TGTAATTCATCATTGATGAC+AGG | + | chr8.4:3321819-3321838 | None:intergenic | 30.0% |
| !! | ACCTCTAGGTCTTTTAAAAA+AGG | - | chr8.4:3321591-3321610 | MS.gene57786:CDS | 30.0% |
| !! | CTCTTAAGTTCTGAAGTTAA+TGG | + | chr8.4:3323038-3323057 | None:intergenic | 30.0% |
| !! | TAGCAAATAGAAAGCATCAA+TGG | + | chr8.4:3321895-3321914 | None:intergenic | 30.0% |
| !! | TATAAATGATGCTTTTTGGG+TGG | - | chr8.4:3322602-3322621 | MS.gene57786:CDS | 30.0% |
| !!! | TCCTTTTTTAAAAGACCTAG+AGG | + | chr8.4:3321595-3321614 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTTTGGGGGG+GGG | - | chr8.4:3322253-3322272 | MS.gene57786:intron | 30.0% |
| AAACAGGTATGCAACAAGAT+TGG | + | chr8.4:3322413-3322432 | None:intergenic | 35.0% | |
| AAGCAAGATAATGAACAGCA+AGG | + | chr8.4:3322985-3323004 | None:intergenic | 35.0% | |
| ATGCAACAAGATTGGTGTAT+TGG | + | chr8.4:3322405-3322424 | None:intergenic | 35.0% | |
| CAATGATGAATTACACTGTC+TGG | - | chr8.4:3321824-3321843 | MS.gene57786:intron | 35.0% | |
| CACTTATTCTTTCTTCTCTC+GGG | + | chr8.4:3322317-3322336 | None:intergenic | 35.0% | |
| GATGTCAGAGTTACAAAATC+TGG | - | chr8.4:3321522-3321541 | MS.gene57786:CDS | 35.0% | |
| GCACTTATTCTTTCTTCTCT+CGG | + | chr8.4:3322318-3322337 | None:intergenic | 35.0% | |
| GCAGCGAAAATATTATCTCA+TGG | + | chr8.4:3322201-3322220 | None:intergenic | 35.0% | |
| TTGGACATGTTAGTGAATGT+CGG | + | chr8.4:3322755-3322774 | None:intergenic | 35.0% | |
| TTGTTTGGAGATTTCTTCAG+AGG | - | chr8.4:3322925-3322944 | MS.gene57786:CDS | 35.0% | |
| !! | TCAGACACTTTAAGATCTTC+TGG | + | chr8.4:3321690-3321709 | None:intergenic | 35.0% |
| !!! | ATGCATTTTTTCCGTGTTTG+TGG | - | chr8.4:3321773-3321792 | MS.gene57786:intron | 35.0% |
| !!! | TTTTTTTTTTTTTGGGGGGG+GGG | - | chr8.4:3322254-3322273 | MS.gene57786:intron | 35.0% |
| AAACAGTGGATCCACAAACA+CGG | + | chr8.4:3321787-3321806 | None:intergenic | 40.0% | |
| AGTGTTTGCCTATTTGTCTG+TGG | + | chr8.4:3322378-3322397 | None:intergenic | 40.0% | |
| CAATAATAGTCACCACCTTG+AGG | - | chr8.4:3321865-3321884 | MS.gene57786:intron | 40.0% | |
| GGTACCATTCGAAGAAATCT+AGG | + | chr8.4:3323017-3323036 | None:intergenic | 40.0% | |
| TCAGAACTTAAGAGAACAGC+TGG | - | chr8.4:3323044-3323063 | MS.gene57786:CDS | 40.0% | |
| TCCTATGAGTAAGAAGCAAG+AGG | + | chr8.4:3322227-3322246 | None:intergenic | 40.0% | |
| TCCTCTTGCTTCTTACTCAT+AGG | - | chr8.4:3322223-3322242 | MS.gene57786:intron | 40.0% | |
| TGATGTACTAGCAACAAAGC+AGG | - | chr8.4:3322959-3322978 | MS.gene57786:CDS | 40.0% | |
| ! | ACAGAAGTCTTTTCAACCTG+TGG | + | chr8.4:3322065-3322084 | None:intergenic | 40.0% |
| !! | CAGAGAACATTGTTGGTAGT+TGG | + | chr8.4:3322158-3322177 | None:intergenic | 40.0% |
| !!! | ATGATGCTTTTTGGGTGGAT+TGG | - | chr8.4:3322607-3322626 | MS.gene57786:CDS | 40.0% |
| !!! | TTTTTTTTTTTTGGGGGGGG+GGG | - | chr8.4:3322255-3322274 | MS.gene57786:intron | 40.0% |
| AATTGGTCGATCACTTGGAC+TGG | - | chr8.4:3321644-3321663 | MS.gene57786:CDS | 45.0% | |
| ATTGGTCGATCACTTGGACT+GGG | - | chr8.4:3321645-3321664 | MS.gene57786:CDS | 45.0% | |
| CAATGTAAGCCGTGCGAAAT+TGG | + | chr8.4:3321929-3321948 | None:intergenic | 45.0% | |
| CCTTGTCTCTCCCGAAATAA+GGG | + | chr8.4:3322643-3322662 | None:intergenic | 45.0% | |
| CTCCATCATCTCGTGTCTTT+GGG | - | chr8.4:3321949-3321968 | MS.gene57786:intron | 45.0% | |
| GGAATGAGAAAGGGATCTGA+AGG | - | chr8.4:3321612-3321631 | MS.gene57786:CDS | 45.0% | |
| TCCTTGTCTCTCCCGAAATA+AGG | + | chr8.4:3322644-3322663 | None:intergenic | 45.0% | |
| TCTGGGTATAGACCGAAAGT+TGG | - | chr8.4:3321842-3321861 | MS.gene57786:intron | 45.0% | |
| TGGCAATGCCACAGACAAAT+AGG | - | chr8.4:3322367-3322386 | MS.gene57786:intron | 45.0% | |
| TGTCTTTGCCGAAACTGCAT+GGG | - | chr8.4:3323067-3323086 | MS.gene57786:CDS | 45.0% | |
| ! | ATATCGTCGCAAGTATCGCT+TGG | + | chr8.4:3322009-3322028 | None:intergenic | 45.0% |
| ! | GTCTTTTCAACCTGTGGTAC+TGG | + | chr8.4:3322059-3322078 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTGGGGGGGGG+GGG | - | chr8.4:3322256-3322275 | MS.gene57786:intron | 45.0% |
| !!! | AATGTTTTTTTTTTTTTTTT+TGG | - | chr8.4:3322246-3322265 | MS.gene57786:intron | 5.0% |
| !!! | ATGTTTTTTTTTTTTTTTTT+GGG | - | chr8.4:3322247-3322266 | MS.gene57786:intron | 5.0% |
| AGCATCAATGGCTGTCCTCA+AGG | + | chr8.4:3321883-3321902 | None:intergenic | 50.0% | |
| ATCAATGGCTGTCCTCAAGG+TGG | + | chr8.4:3321880-3321899 | None:intergenic | 50.0% | |
| ATCATCTCGTGTCTTTGGGC+GGG | - | chr8.4:3321953-3321972 | MS.gene57786:intron | 50.0% | |
| ATCTGTGTTGCCAGTACCAC+AGG | - | chr8.4:3322046-3322065 | MS.gene57786:intron | 50.0% | |
| ATGGAAGCAGCACAACCTCT+AGG | - | chr8.4:3321577-3321596 | MS.gene57786:CDS | 50.0% | |
| CATCATCTCGTGTCTTTGGG+CGG | - | chr8.4:3321952-3321971 | MS.gene57786:intron | 50.0% | |
| CATGGCTCTCCAATTTCGCA+CGG | - | chr8.4:3321917-3321936 | MS.gene57786:intron | 50.0% | |
| GCTCCATCATCTCGTGTCTT+TGG | - | chr8.4:3321948-3321967 | MS.gene57786:intron | 50.0% | |
| GGGCGAGCTTGTGATAGATT+CGG | - | chr8.4:3321974-3321993 | MS.gene57786:intron | 50.0% | |
| GTGTCTTTGCCGAAACTGCA+TGG | - | chr8.4:3323066-3323085 | MS.gene57786:CDS | 50.0% | |
| TTGGTCGATCACTTGGACTG+GGG | - | chr8.4:3321646-3321665 | MS.gene57786:CDS | 50.0% | |
| ! | CCCTTATTTCGGGAGAGACA+AGG | - | chr8.4:3322640-3322659 | MS.gene57786:CDS | 50.0% |
| ! | TGCTGCTTCCATGACTACCA+TGG | + | chr8.4:3321569-3321588 | None:intergenic | 50.0% |
| !! | ACTTGGACTGGGGGTATCTA+AGG | - | chr8.4:3321656-3321675 | MS.gene57786:CDS | 50.0% |
| !! | GTGGTACTGGCAACACAGAT+AGG | + | chr8.4:3322046-3322065 | None:intergenic | 50.0% |
| CGCCCAAAGACACGAGATGA+TGG | + | chr8.4:3321954-3321973 | None:intergenic | 55.0% | |
| CTTTGCCGAAACTGCATGGG+CGG | - | chr8.4:3323070-3323089 | MS.gene57786:CDS | 55.0% | |
| TCATCTCGTGTCTTTGGGCG+GGG | - | chr8.4:3321954-3321973 | MS.gene57786:intron | 55.0% | |
| TTTGCCGAAACTGCATGGGC+GGG | - | chr8.4:3323071-3323090 | MS.gene57786:CDS | 55.0% | |
| ! | TGGTCGATCACTTGGACTGG+GGG | - | chr8.4:3321647-3321666 | MS.gene57786:CDS | 55.0% |
| AGCACCCGCCCATGCAGTTT+CGG | + | chr8.4:3323078-3323097 | None:intergenic | 60.0% | |
| !! | GGGGGGGTTAGTTGGTAGGA+GGG | - | chr8.4:3322272-3322291 | MS.gene57786:intron | 60.0% |
| ! | TTTGGGGGGGGGGGGTTAGT+TGG | - | chr8.4:3322264-3322283 | MS.gene57786:intron | 65.0% |
| !! | GGGGGGGGTTAGTTGGTAGG+AGG | - | chr8.4:3322271-3322290 | MS.gene57786:intron | 65.0% |
| !! | GGGGGGGGGGGTTAGTTGGT+AGG | - | chr8.4:3322268-3322287 | MS.gene57786:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 3321485 | 3323133 | 3321485 | ID=MS.gene57786 |
| chr8.4 | mRNA | 3321485 | 3323133 | 3321485 | ID=MS.gene57786.t1;Parent=MS.gene57786 |
| chr8.4 | exon | 3322551 | 3323133 | 3322551 | ID=MS.gene57786.t1.exon1;Parent=MS.gene57786.t1 |
| chr8.4 | CDS | 3322551 | 3323133 | 3322551 | ID=cds.MS.gene57786.t1;Parent=MS.gene57786.t1 |
| chr8.4 | exon | 3321485 | 3321697 | 3321485 | ID=MS.gene57786.t1.exon2;Parent=MS.gene57786.t1 |
| chr8.4 | CDS | 3321485 | 3321697 | 3321485 | ID=cds.MS.gene57786.t1;Parent=MS.gene57786.t1 |
| Gene Sequence |
| Protein sequence |
