AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58948


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58948.t1 MTR_4g118770 98.684 532 4 1 1 532 1 529 0.0 1056
MS.gene58948.t1 MTR_1g081900 74.858 529 127 2 6 531 7 532 0.0 805
MS.gene58948.t1 MTR_7g114250 69.963 536 143 4 9 531 4 534 0.0 760
MS.gene58948.t1 MTR_1g082440 63.281 512 181 3 22 531 23 529 0.0 665
MS.gene58948.t1 MTR_1g082450 60.536 522 197 5 12 532 12 525 0.0 629
MS.gene58948.t1 MTR_3g055600 61.297 509 189 5 15 520 21 524 0.0 608
MS.gene58948.t1 MTR_2g028230 31.753 485 269 18 17 488 20 455 9.12e-38 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58948.t1 AT3G05030 72.897 535 133 4 5 531 5 535 0.0 795
MS.gene58948.t1 AT3G05030 72.897 535 133 4 5 531 5 535 0.0 795
MS.gene58948.t1 AT3G05030 72.897 535 133 4 5 531 5 535 0.0 795
MS.gene58948.t1 AT5G27150 73.295 528 135 3 6 531 4 527 0.0 778
MS.gene58948.t1 AT3G06370 70.019 537 150 3 1 532 2 532 0.0 738
MS.gene58948.t1 AT3G06370 70.019 537 150 3 1 532 2 532 0.0 738
MS.gene58948.t1 AT3G06370 76.600 453 103 1 1 453 2 451 0.0 689
MS.gene58948.t1 AT3G05030 77.958 431 92 1 5 435 5 432 0.0 689
MS.gene58948.t1 AT3G06370 74.702 419 101 2 1 417 2 417 0.0 626
MS.gene58948.t1 AT5G55470 59.309 521 202 6 6 520 4 520 0.0 601
MS.gene58948.t1 AT1G79610 31.448 442 270 13 17 447 20 439 2.30e-52 186
MS.gene58948.t1 AT1G54370 33.005 406 251 11 18 415 20 412 5.42e-41 155

Find 113 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATCCATCTTAGGTTTC+AGG 0.140957 8.3:+7896831 MS.gene58948:intron
ATTATTAAAAGGCTCTATTT+TGG 0.211060 8.3:+7897746 MS.gene58948:CDS
ACCACTGCTTTACATTTATT+AGG 0.251026 8.3:+7897564 MS.gene58948:CDS
TACGCAATCTGCTTGGTCTT+TGG 0.254768 8.3:-7899186 None:intergenic
TCATTCAGTGTGCCACTTCT+TGG 0.258334 8.3:+7899130 MS.gene58948:CDS
TTAGCGCATACATTATTAAA+AGG 0.286135 8.3:+7897735 MS.gene58948:CDS
TCTTTCATGCGACCTGTCTT+TGG 0.300257 8.3:+7899265 MS.gene58948:CDS
ACGCAATCTGCTTGGTCTTT+GGG 0.311048 8.3:-7899185 None:intergenic
AGTGGCACACTGAATGATTT+CGG 0.319470 8.3:-7899124 None:intergenic
CTGTCTCACAGGTGACAATT+TGG 0.328103 8.3:+7898619 MS.gene58948:intron
CTTTGTACTTGTATCGTCAT+TGG 0.336938 8.3:+7896225 MS.gene58948:CDS
GTGGCACACTGAATGATTTC+GGG 0.338694 8.3:-7899123 None:intergenic
TGCGACCTGTCTTTGGTGGC+CGG 0.355037 8.3:+7899272 MS.gene58948:CDS
CAGTTTGACACTAAGTTAAA+GGG 0.361078 8.3:-7899323 None:intergenic
GATATTGGTTCCCTCAAGAT+TGG 0.362548 8.3:+7897196 MS.gene58948:CDS
TATCGTCATTGGTCATTTGT+TGG 0.363963 8.3:+7896236 MS.gene58948:CDS
TTGAAATTGTGCAGGTGTTT+GGG 0.364620 8.3:+7899020 MS.gene58948:intron
TGGGGTCAGTTCATTGTTGT+TGG 0.367855 8.3:+7898415 MS.gene58948:CDS
GCGACCTGTCTTTGGTGGCC+GGG 0.378700 8.3:+7899273 MS.gene58948:CDS
CTGAATGATTTCGGGCTAGA+TGG 0.384626 8.3:-7899115 None:intergenic
GCAGATTGCGTACGCTCCTT+AGG 0.401130 8.3:+7899197 MS.gene58948:CDS
AGATTCTGTGTGCACATTGC+AGG 0.402521 8.3:+7897346 MS.gene58948:CDS
TATTTATCTTCCTTTATGTT+GGG 0.404210 8.3:+7898246 MS.gene58948:CDS
CGACCTGTCTTTGGTGGCCG+GGG 0.408053 8.3:+7899274 MS.gene58948:CDS
TTTGAAATTGTGCAGGTGTT+TGG 0.409369 8.3:+7899019 MS.gene58948:intron
TATGCATCAGGTTCTTAATC+AGG 0.411383 8.3:+7897428 MS.gene58948:intron
TATTGCACTTGCTTACAATC+AGG 0.413578 8.3:+7898671 MS.gene58948:CDS
GTTCATAGCAAGCACTGTCT+TGG 0.414219 8.3:+7897602 MS.gene58948:CDS
GCATGGCAGGGTTTGTGTAC+TGG 0.415493 8.3:+7896383 MS.gene58948:intron
TTCATAGCAAGCACTGTCTT+GGG 0.418763 8.3:+7897603 MS.gene58948:CDS
CTCAAGATTGGAGATTATCT+AGG 0.423564 8.3:+7897208 MS.gene58948:CDS
ATTAGTATGTGTTTAGAAGA+AGG 0.428817 8.3:-7899076 None:intergenic
CTTAGACAAGTTGGATATGA+AGG 0.435790 8.3:-7898480 None:intergenic
TTGAGACTTCTTAGACAAGT+TGG 0.436361 8.3:-7898489 None:intergenic
ATATTTATCTTCCTTTATGT+TGG 0.440896 8.3:+7898245 MS.gene58948:CDS
CAGGTGACAATTTGGTGGGC+TGG 0.445430 8.3:+7898627 MS.gene58948:intron
GTGCATCCATCCCAACATAA+AGG 0.448599 8.3:-7898256 None:intergenic
AGGAAGAAGCTCTCATATAA+TGG 0.452232 8.3:+7896430 MS.gene58948:CDS
ATGATTTCGGGCTAGATGGC+GGG 0.468663 8.3:-7899111 None:intergenic
TGGGATGGATGCACTAGATA+TGG 0.474039 8.3:+7898265 MS.gene58948:CDS
TTCATGCGACCTGTCTTTGG+TGG 0.475407 8.3:+7899268 MS.gene58948:CDS
AGGGGTGAACCAGGAACATA+AGG 0.475510 8.3:-7899304 None:intergenic
TTACTATACAGCCTGGTGTT+CGG 0.476552 8.3:+7897462 MS.gene58948:CDS
TCCTTAGGATTCCTAGTCAT+GGG 0.479615 8.3:+7899212 MS.gene58948:CDS
CTCCTTAGGATTCCTAGTCA+TGG 0.480546 8.3:+7899211 MS.gene58948:CDS
TAGATAATCTCCAATCTTGA+GGG 0.481077 8.3:-7897206 None:intergenic
GGAGGTGTGAATATGGTTGG+AGG 0.492621 8.3:+7896120 None:intergenic
CTTGGCAATGGAGAAGATGT+AGG 0.494405 8.3:+7899148 MS.gene58948:CDS
TATCTTCCTTTATGTTGGGA+TGG 0.496698 8.3:+7898250 MS.gene58948:CDS
GGTTGCTCTAATGATACTAA+TGG 0.497694 8.3:+7897885 MS.gene58948:CDS
AAGTTGGATATGAAGGAGAG+AGG 0.498871 8.3:-7898473 None:intergenic
AGTTGGATATGAAGGAGAGA+GGG 0.500994 8.3:-7898472 None:intergenic
TTTGGAGGTGTGAATATGGT+TGG 0.504748 8.3:+7896117 None:intergenic
TCTCACAGGTGACAATTTGG+TGG 0.505832 8.3:+7898622 MS.gene58948:intron
CTACGCCTTCTCCGAACACC+AGG 0.508804 8.3:-7897473 None:intergenic
ACTTTCTGTCACATTATGCC+AGG 0.519819 8.3:-7898086 None:intergenic
TTGGCAATGGAGAAGATGTA+GGG 0.524629 8.3:+7899149 MS.gene58948:CDS
TACAATGAGAAGAGCAGTGA+TGG 0.526201 8.3:-7896283 None:intergenic
TTCGGGCTAGATGGCGGGGA+CGG 0.526769 8.3:-7899106 None:intergenic
CTAGATAATCTCCAATCTTG+AGG 0.531082 8.3:-7897207 None:intergenic
AGACCCTGCATTGAAAATGA+TGG 0.531293 8.3:-7896492 None:intergenic
AGTGTGCCACTTCTTGGCAA+TGG 0.537863 8.3:+7899136 MS.gene58948:CDS
GTCATGGGGTACATCACTAC+TGG 0.541862 8.3:+7899227 MS.gene58948:CDS
CTAAGTTAAAGGGGTGAACC+AGG 0.541980 8.3:-7899313 None:intergenic
TTCTTATGTCACATTATACC+TGG 0.544701 8.3:+7898068 MS.gene58948:CDS
CGTCATTGGTCATTTGTTGG+AGG 0.545230 8.3:+7896239 MS.gene58948:CDS
CAAATGCAGCTCTTCCCACT+AGG 0.548735 8.3:-7898445 None:intergenic
AAACCCCGGCCACCAAAGAC+AGG 0.549989 8.3:-7899277 None:intergenic
TGAAAATGATGGGTGGGAGA+AGG 0.550732 8.3:-7896481 None:intergenic
GCAGAAGAACACAGTCAGAA+TGG 0.554177 8.3:-7898041 None:intergenic
TACAGCCTGGTGTTCGGAGA+AGG 0.561106 8.3:+7897468 MS.gene58948:CDS
CTCACAGGTGACAATTTGGT+GGG 0.564909 8.3:+7898623 MS.gene58948:intron
ATTTGTTGGAGGAGAACCGT+TGG 0.572968 8.3:+7896250 MS.gene58948:CDS
TGGTTAAGTCAATGTGGGAG+AGG 0.575379 8.3:-7897545 None:intergenic
AACACCAGGCTGTATAGTAA+AGG 0.575684 8.3:-7897459 None:intergenic
CCCCATGACTAGGAATCCTA+AGG 0.580792 8.3:-7899213 None:intergenic
TCCTAATAAATGTAAAGCAG+TGG 0.581310 8.3:-7897565 None:intergenic
TTGTTGGCACTTATCCTAGT+GGG 0.583199 8.3:+7898431 MS.gene58948:CDS
TCTTCTCCATTGCCAAGAAG+TGG 0.583601 8.3:-7899142 None:intergenic
TGATGGATTCATTAATCCAA+CGG 0.584319 8.3:-7896266 None:intergenic
TGATTTCGGGCTAGATGGCG+GGG 0.584944 8.3:-7899110 None:intergenic
TCATTCTGCATTATATCACT+AGG 0.590350 8.3:+7896922 MS.gene58948:CDS
AGGAGCGTACGCAATCTGCT+TGG 0.594134 8.3:-7899193 None:intergenic
AATAGTACTAGTGATCATGA+TGG 0.594448 8.3:-7898811 None:intergenic
GGTGTGAATATGGTTGGAGG+AGG 0.595862 8.3:+7896123 None:intergenic
AATGATTTCGGGCTAGATGG+CGG 0.600704 8.3:-7899112 None:intergenic
GACCCTGCATTGAAAATGAT+GGG 0.601449 8.3:-7896491 None:intergenic
TGGTGGGCTGGTCTCATGCG+TGG 0.603536 8.3:+7898639 MS.gene58948:CDS
GTTGTTGGCACTTATCCTAG+TGG 0.604848 8.3:+7898430 MS.gene58948:CDS
TACATGCAGTTTACAAGACT+AGG 0.607018 8.3:+7898765 MS.gene58948:intron
TAGTGATGTACCCCATGACT+AGG 0.612022 8.3:-7899223 None:intergenic
AGCAGTGGTTAAGTCAATGT+GGG 0.615760 8.3:-7897550 None:intergenic
AACACCTTTACTATACAGCC+TGG 0.616257 8.3:+7897455 MS.gene58948:CDS
AGTGGCGATTTGTAAGTCAA+AGG 0.619523 8.3:+7898291 MS.gene58948:CDS
AGTTTGACACTAAGTTAAAG+GGG 0.620652 8.3:-7899322 None:intergenic
CTGCATTGAAAATGATGGGT+GGG 0.625264 8.3:-7896487 None:intergenic
ATTCTGACTGTGTTCTTCTG+CGG 0.628149 8.3:+7898043 MS.gene58948:CDS
AAGCAGTGGTTAAGTCAATG+TGG 0.629476 8.3:-7897551 None:intergenic
GATGACCTCGGATCATGCAT+CGG 0.634491 8.3:+7896173 MS.gene58948:CDS
ATGCACTAGATATGGAGAAG+TGG 0.648287 8.3:+7898273 MS.gene58948:CDS
TGATGACGAAGCCACTTGTG+AGG 0.648597 8.3:+7899044 MS.gene58948:CDS
GCATTATAGTCATAAAATTG+CGG 0.650947 8.3:-7896873 None:intergenic
CCTTAGGATTCCTAGTCATG+GGG 0.658774 8.3:+7899213 MS.gene58948:CDS
GGTAGCAATAACCTCACAAG+TGG 0.659179 8.3:-7899055 None:intergenic
GAACATAAGGTACAAAACCC+CGG 0.664909 8.3:-7899291 None:intergenic
ACTAACGACGATGATGACCT+CGG 0.666950 8.3:+7896161 MS.gene58948:CDS
CACAACCGATGCATGATCCG+AGG 0.676103 8.3:-7896178 None:intergenic
CCTGCATTGAAAATGATGGG+TGG 0.685223 8.3:-7896488 None:intergenic
TGGCAATGGAGAAGATGTAG+GGG 0.687212 8.3:+7899150 MS.gene58948:CDS
GGCAATGGAGAAGATGTAGG+GGG 0.711537 8.3:+7899151 MS.gene58948:CDS
AGTTGTACTCTTCAGCACAG+TGG 0.732455 8.3:+7898836 MS.gene58948:CDS
CAGACACTCTACAGACCGCG+AGG 0.761245 8.3:+7897864 MS.gene58948:intron
GTATCATTAGAGCAACCTCG+CGG 0.763928 8.3:-7897879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTAAAAAAGTTTTATA+TGG - chr8.3:7896551-7896570 None:intergenic 10.0%
!! ATTGTATGATATATTATTGA+TGG + chr8.3:7896361-7896380 MS.gene58948:intron 15.0%
!! TTATACTAATGTAAATATGT+TGG - chr8.3:7898143-7898162 None:intergenic 15.0%
!!! GTTTAATTTTATTTTTGCAA+AGG - chr8.3:7896598-7896617 None:intergenic 15.0%
!!! TATAAAGATTTTTAGATTGA+TGG + chr8.3:7898314-7898333 MS.gene58948:intron 15.0%
!!! TGTTTTTTCTGATATTTTTT+AGG + chr8.3:7897703-7897722 MS.gene58948:intron 15.0%
!! AAACAATGTAGATATTTGAA+AGG + chr8.3:7896614-7896633 MS.gene58948:intron 20.0%
!! ATATTTATCTTCCTTTATGT+TGG + chr8.3:7898245-7898264 MS.gene58948:CDS 20.0%
!! ATTATCTGATGATTTAATGT+TGG + chr8.3:7897248-7897267 MS.gene58948:intron 20.0%
!! CAATTGATAAAATTGATTGA+TGG - chr8.3:7896986-7897005 None:intergenic 20.0%
!! TATTTATCTTCCTTTATGTT+GGG + chr8.3:7898246-7898265 MS.gene58948:CDS 20.0%
!! TGGATTGTAAATACAAATAA+AGG - chr8.3:7896531-7896550 None:intergenic 20.0%
!! TTCTTCCAAAAATTAGATAT+TGG + chr8.3:7897181-7897200 MS.gene58948:CDS 20.0%
!!! ATTATTAAAAGGCTCTATTT+TGG + chr8.3:7897746-7897765 MS.gene58948:CDS 20.0%
!!! GATCGTTTTTATTATTTCTT+TGG + chr8.3:7897999-7898018 MS.gene58948:intron 20.0%
!!! TTTATGACTATAATGCTTTT+TGG + chr8.3:7896880-7896899 MS.gene58948:CDS 20.0%
!!! TTTTCTGATATTTTTTAGGT+TGG + chr8.3:7897707-7897726 MS.gene58948:intron 20.0%
! AACATAACAAAGTGACATAT+TGG + chr8.3:7896650-7896669 MS.gene58948:intron 25.0%
! ATGGCACATTAATATAGATT+AGG + chr8.3:7898878-7898897 MS.gene58948:intron 25.0%
! ATTAGCCCAAAAAAATCAAT+TGG + chr8.3:7898395-7898414 MS.gene58948:intron 25.0%
! ATTAGTATGTGTTTAGAAGA+AGG - chr8.3:7899079-7899098 None:intergenic 25.0%
! ATTATCTATATGTATGCATC+AGG + chr8.3:7897416-7897435 MS.gene58948:intron 25.0%
! CAAATGTTCAAGACAATATT+TGG - chr8.3:7899003-7899022 None:intergenic 25.0%
! GCATTATAGTCATAAAATTG+CGG - chr8.3:7896876-7896895 None:intergenic 25.0%
! TCATAACTAGGAATGTTAAA+AGG + chr8.3:7898966-7898985 MS.gene58948:intron 25.0%
! TGTTATTCTTTATCCATCTT+AGG + chr8.3:7896824-7896843 MS.gene58948:intron 25.0%
! TTAGACTCTACTCAATTAAA+TGG + chr8.3:7898859-7898878 MS.gene58948:intron 25.0%
! TTAGCCCAAAAAAATCAATT+GGG + chr8.3:7898396-7898415 MS.gene58948:intron 25.0%
! TTAGCGCATACATTATTAAA+AGG + chr8.3:7897735-7897754 MS.gene58948:CDS 25.0%
! TTTAACATTCCTAGTTATGA+TGG - chr8.3:7898966-7898985 None:intergenic 25.0%
!! ATGATATATTATTGATGGCA+TGG + chr8.3:7896366-7896385 MS.gene58948:intron 25.0%
!!! ATCTGTTATTTATTTTGCCT+AGG + chr8.3:7897148-7897167 MS.gene58948:intron 25.0%
!!! CTGAAGTAAGATTTTTTTTC+TGG + chr8.3:7897929-7897948 MS.gene58948:intron 25.0%
!!! GTGTTAATTTTGTTTACAAC+TGG + chr8.3:7896407-7896426 MS.gene58948:CDS 25.0%
!!! TAATTTTTGGAAGAAGTGTA+TGG - chr8.3:7897176-7897195 None:intergenic 25.0%
!!! TACTTGTTTTGATAAGACTT+TGG + chr8.3:7897021-7897040 MS.gene58948:intron 25.0%
!!! TTAATTTTGTTTACAACTGG+AGG + chr8.3:7896410-7896429 MS.gene58948:CDS 25.0%
AAGGTAAGTGTTCATATTTG+TGG - chr8.3:7897280-7897299 None:intergenic 30.0%
AATAGTACTAGTGATCATGA+TGG - chr8.3:7898814-7898833 None:intergenic 30.0%
ACCACTGCTTTACATTTATT+AGG + chr8.3:7897564-7897583 MS.gene58948:CDS 30.0%
CAGATGTGAAATTAACATTG+TGG + chr8.3:7898365-7898384 MS.gene58948:intron 30.0%
TAAGACTTTGGATCAAAATG+TGG + chr8.3:7897033-7897052 MS.gene58948:intron 30.0%
TAGATAATCTCCAATCTTGA+GGG - chr8.3:7897209-7897228 None:intergenic 30.0%
TAGCCCAAAAAAATCAATTG+GGG + chr8.3:7898397-7898416 MS.gene58948:intron 30.0%
TAGTATGAGTCAATTCTTTC+AGG - chr8.3:7898732-7898751 None:intergenic 30.0%
TCATTCTGCATTATATCACT+AGG + chr8.3:7896922-7896941 MS.gene58948:CDS 30.0%
TCCTAATAAATGTAAAGCAG+TGG - chr8.3:7897568-7897587 None:intergenic 30.0%
TTATCACACACAAAATGTGT+TGG - chr8.3:7897098-7897117 None:intergenic 30.0%
TTCTTATGTCACATTATACC+TGG + chr8.3:7898068-7898087 MS.gene58948:CDS 30.0%
! ATTGATGGTATAGAAAGTAG+AGG - chr8.3:7896971-7896990 None:intergenic 30.0%
! GGGAACCAATATCTAATTTT+TGG - chr8.3:7897189-7897208 None:intergenic 30.0%
! TTGAACATTTGAAATTGTGC+AGG + chr8.3:7899012-7899031 MS.gene58948:intron 30.0%
!! ATAATGCTTTTTGGTGCAAT+TGG + chr8.3:7896889-7896908 MS.gene58948:CDS 30.0%
!! TGATGGATTCATTAATCCAA+CGG - chr8.3:7896269-7896288 None:intergenic 30.0%
!!! TCTATTTTGGCAAGTTGATA+AGG + chr8.3:7897759-7897778 MS.gene58948:CDS 30.0%
!!! TGACCCCAATTGATTTTTTT+GGG - chr8.3:7898403-7898422 None:intergenic 30.0%
AGCAAACAATAGAAGAGACA+AGG - chr8.3:7897668-7897687 None:intergenic 35.0%
AGGAAGAAGCTCTCATATAA+TGG + chr8.3:7896430-7896449 MS.gene58948:CDS 35.0%
ATTCTTTCAGGATGTTGAAC+TGG - chr8.3:7898720-7898739 None:intergenic 35.0%
CAAACAATAGAAGAGACAAG+GGG - chr8.3:7897666-7897685 None:intergenic 35.0%
CAGCTATGAAGATCTTGAAA+TGG - chr8.3:7898560-7898579 None:intergenic 35.0%
CTAGATAATCTCCAATCTTG+AGG - chr8.3:7897210-7897229 None:intergenic 35.0%
CTCAAGATTGGAGATTATCT+AGG + chr8.3:7897208-7897227 MS.gene58948:CDS 35.0%
CTTTATCCATCTTAGGTTTC+AGG + chr8.3:7896831-7896850 MS.gene58948:intron 35.0%
CTTTGTACTTGTATCGTCAT+TGG + chr8.3:7896225-7896244 MS.gene58948:CDS 35.0%
GCAAACAATAGAAGAGACAA+GGG - chr8.3:7897667-7897686 None:intergenic 35.0%
GCATTCAGTAGAAGAAGATA+AGG - chr8.3:7897299-7897318 None:intergenic 35.0%
GGTTGCTCTAATGATACTAA+TGG + chr8.3:7897885-7897904 MS.gene58948:CDS 35.0%
TACATGCAGTTTACAAGACT+AGG + chr8.3:7898765-7898784 MS.gene58948:intron 35.0%
TATCGTCATTGGTCATTTGT+TGG + chr8.3:7896236-7896255 MS.gene58948:CDS 35.0%
TATCTTCCTTTATGTTGGGA+TGG + chr8.3:7898250-7898269 MS.gene58948:CDS 35.0%
TATGCATCAGGTTCTTAATC+AGG + chr8.3:7897428-7897447 MS.gene58948:intron 35.0%
TATTGCACTTGCTTACAATC+AGG + chr8.3:7898671-7898690 MS.gene58948:CDS 35.0%
TTATATAATCACTCTGCTGC+AGG + chr8.3:7898189-7898208 MS.gene58948:intron 35.0%
TTGAAATTGTGCAGGTGTTT+GGG + chr8.3:7899020-7899039 MS.gene58948:intron 35.0%
TTGAGACTTCTTAGACAAGT+TGG - chr8.3:7898492-7898511 None:intergenic 35.0%
! ATATTATTGATGGCATGGCA+GGG + chr8.3:7896371-7896390 MS.gene58948:intron 35.0%
! CTTAGACAAGTTGGATATGA+AGG - chr8.3:7898483-7898502 None:intergenic 35.0%
! TATATTATTGATGGCATGGC+AGG + chr8.3:7896370-7896389 MS.gene58948:intron 35.0%
! TTTGAAATTGTGCAGGTGTT+TGG + chr8.3:7899019-7899038 MS.gene58948:intron 35.0%
!! ACACACAAAATGTGTTGGTT+AGG - chr8.3:7897093-7897112 None:intergenic 35.0%
!! CACACAAAATGTGTTGGTTA+GGG - chr8.3:7897092-7897111 None:intergenic 35.0%
!! GTTGATAAGGTGGATTAGTT+CGG + chr8.3:7897772-7897791 MS.gene58948:intron 35.0%
!! TTGATAAGGTGGATTAGTTC+GGG + chr8.3:7897773-7897792 MS.gene58948:intron 35.0%
!!! ATTTTGGCAAGTTGATAAGG+TGG + chr8.3:7897762-7897781 MS.gene58948:intron 35.0%
!!! CTGACCCCAATTGATTTTTT+TGG - chr8.3:7898404-7898423 None:intergenic 35.0%
AACACCAGGCTGTATAGTAA+AGG - chr8.3:7897462-7897481 None:intergenic 40.0%
AACACCTTTACTATACAGCC+TGG + chr8.3:7897455-7897474 MS.gene58948:CDS 40.0%
AAGCAGTGGTTAAGTCAATG+TGG - chr8.3:7897554-7897573 None:intergenic 40.0%
AAGTTGGATATGAAGGAGAG+AGG - chr8.3:7898476-7898495 None:intergenic 40.0%
ACTTTCTGTCACATTATGCC+AGG - chr8.3:7898089-7898108 None:intergenic 40.0%
AGACCCTGCATTGAAAATGA+TGG - chr8.3:7896495-7896514 None:intergenic 40.0%
AGCAGTGGTTAAGTCAATGT+GGG - chr8.3:7897553-7897572 None:intergenic 40.0%
AGTGACACTCCATCATAACT+AGG + chr8.3:7898954-7898973 MS.gene58948:intron 40.0%
AGTGGCACACTGAATGATTT+CGG - chr8.3:7899127-7899146 None:intergenic 40.0%
AGTGGCGATTTGTAAGTCAA+AGG + chr8.3:7898291-7898310 MS.gene58948:CDS 40.0%
AGTTGGATATGAAGGAGAGA+GGG - chr8.3:7898475-7898494 None:intergenic 40.0%
ATGCACTAGATATGGAGAAG+TGG + chr8.3:7898273-7898292 MS.gene58948:CDS 40.0%
ATTCTGACTGTGTTCTTCTG+CGG + chr8.3:7898043-7898062 MS.gene58948:CDS 40.0%
CTTCTACTGAATGCAGCAAT+TGG + chr8.3:7897305-7897324 MS.gene58948:intron 40.0%
GAACATAAGGTACAAAACCC+CGG - chr8.3:7899294-7899313 None:intergenic 40.0%
GACCCTGCATTGAAAATGAT+GGG - chr8.3:7896494-7896513 None:intergenic 40.0%
TACAATGAGAAGAGCAGTGA+TGG - chr8.3:7896286-7896305 None:intergenic 40.0%
TCCTTAGGATTCCTAGTCAT+GGG + chr8.3:7899212-7899231 MS.gene58948:CDS 40.0%
TCTTGACCTGAAACCTAAGA+TGG - chr8.3:7896840-7896859 None:intergenic 40.0%
TTACTATACAGCCTGGTGTT+CGG + chr8.3:7897462-7897481 MS.gene58948:CDS 40.0%
TTGGCAATGGAGAAGATGTA+GGG + chr8.3:7899149-7899168 MS.gene58948:CDS 40.0%
TTGTTGGCACTTATCCTAGT+GGG + chr8.3:7898431-7898450 MS.gene58948:CDS 40.0%
! CACCCATCATTTTCAATGCA+GGG + chr8.3:7896489-7896508 MS.gene58948:CDS 40.0%
! TGTCACTGTCACTTGTATAC+AGG - chr8.3:7898941-7898960 None:intergenic 40.0%
! TTCATAGCAAGCACTGTCTT+GGG + chr8.3:7897603-7897622 MS.gene58948:CDS 40.0%
!! CTGCATTGAAAATGATGGGT+GGG - chr8.3:7896490-7896509 None:intergenic 40.0%
!! GATATTGGTTCCCTCAAGAT+TGG + chr8.3:7897196-7897215 MS.gene58948:CDS 40.0%
!! GGTTTTGTACCTTATGTTCC+TGG + chr8.3:7899295-7899314 MS.gene58948:CDS 40.0%
ACTAACGACGATGATGACCT+CGG + chr8.3:7896161-7896180 MS.gene58948:CDS 45.0%
AGATTCTGTGTGCACATTGC+AGG + chr8.3:7897346-7897365 MS.gene58948:CDS 45.0%
AGTTGTACTCTTCAGCACAG+TGG + chr8.3:7898836-7898855 MS.gene58948:CDS 45.0%
CCTTAGGATTCCTAGTCATG+GGG + chr8.3:7899213-7899232 MS.gene58948:CDS 45.0%
CTCACAGGTGACAATTTGGT+GGG + chr8.3:7898623-7898642 MS.gene58948:intron 45.0%
CTCCTTAGGATTCCTAGTCA+TGG + chr8.3:7899211-7899230 MS.gene58948:CDS 45.0%
CTGTCTCACAGGTGACAATT+TGG + chr8.3:7898619-7898638 MS.gene58948:intron 45.0%
CTTGGCAATGGAGAAGATGT+AGG + chr8.3:7899148-7899167 MS.gene58948:CDS 45.0%
GCAGAAGAACACAGTCAGAA+TGG - chr8.3:7898044-7898063 None:intergenic 45.0%
GGTAGCAATAACCTCACAAG+TGG - chr8.3:7899058-7899077 None:intergenic 45.0%
GTATCATTAGAGCAACCTCG+CGG - chr8.3:7897882-7897901 None:intergenic 45.0%
GTGCATCCATCCCAACATAA+AGG - chr8.3:7898259-7898278 None:intergenic 45.0%
GTGGCACACTGAATGATTTC+GGG - chr8.3:7899126-7899145 None:intergenic 45.0%
GTTGTTGGCACTTATCCTAG+TGG + chr8.3:7898430-7898449 MS.gene58948:CDS 45.0%
TAGTGATGTACCCCATGACT+AGG - chr8.3:7899226-7899245 None:intergenic 45.0%
TCACCTGTGAGACAGATCAT+CGG - chr8.3:7898614-7898633 None:intergenic 45.0%
TCTCACAGGTGACAATTTGG+TGG + chr8.3:7898622-7898641 MS.gene58948:intron 45.0%
TCTTCTCCATTGCCAAGAAG+TGG - chr8.3:7899145-7899164 None:intergenic 45.0%
TCTTTCATGCGACCTGTCTT+TGG + chr8.3:7899265-7899284 MS.gene58948:CDS 45.0%
TGGCAATGGAGAAGATGTAG+GGG + chr8.3:7899150-7899169 MS.gene58948:CDS 45.0%
TGGGATGGATGCACTAGATA+TGG + chr8.3:7898265-7898284 MS.gene58948:CDS 45.0%
TGGGGTCAGTTCATTGTTGT+TGG + chr8.3:7898415-7898434 MS.gene58948:CDS 45.0%
TGGTTAAGTCAATGTGGGAG+AGG - chr8.3:7897548-7897567 None:intergenic 45.0%
! AATGATTTCGGGCTAGATGG+CGG - chr8.3:7899115-7899134 None:intergenic 45.0%
! ACGCAATCTGCTTGGTCTTT+GGG - chr8.3:7899188-7899207 None:intergenic 45.0%
! ATTTGTTGGAGGAGAACCGT+TGG + chr8.3:7896250-7896269 MS.gene58948:CDS 45.0%
! CCACCCATCATTTTCAATGC+AGG + chr8.3:7896488-7896507 MS.gene58948:CDS 45.0%
! CCTGCATTGAAAATGATGGG+TGG - chr8.3:7896491-7896510 None:intergenic 45.0%
! CGTCATTGGTCATTTGTTGG+AGG + chr8.3:7896239-7896258 MS.gene58948:CDS 45.0%
! CTGAATGATTTCGGGCTAGA+TGG - chr8.3:7899118-7899137 None:intergenic 45.0%
! GTTCATAGCAAGCACTGTCT+TGG + chr8.3:7897602-7897621 MS.gene58948:CDS 45.0%
! TACGCAATCTGCTTGGTCTT+TGG - chr8.3:7899189-7899208 None:intergenic 45.0%
!! TCATTCAGTGTGCCACTTCT+TGG + chr8.3:7899130-7899149 MS.gene58948:CDS 45.0%
!! TGAAAATGATGGGTGGGAGA+AGG - chr8.3:7896484-7896503 None:intergenic 45.0%
!!! TTTCTAATTTATTTATTTTT+TGG + chr8.3:7897833-7897852 MS.gene58948:intron 5.0%
AGGGGTGAACCAGGAACATA+AGG - chr8.3:7899307-7899326 None:intergenic 50.0%
CAAATGCAGCTCTTCCCACT+AGG - chr8.3:7898448-7898467 None:intergenic 50.0%
CCCCATGACTAGGAATCCTA+AGG - chr8.3:7899216-7899235 None:intergenic 50.0%
GATGACCTCGGATCATGCAT+CGG + chr8.3:7896173-7896192 MS.gene58948:CDS 50.0%
GGCAATGGAGAAGATGTAGG+GGG + chr8.3:7899151-7899170 MS.gene58948:CDS 50.0%
GTCATGGGGTACATCACTAC+TGG + chr8.3:7899227-7899246 MS.gene58948:CDS 50.0%
TTCATGCGACCTGTCTTTGG+TGG + chr8.3:7899268-7899287 MS.gene58948:CDS 50.0%
! ATGATTTCGGGCTAGATGGC+GGG - chr8.3:7899114-7899133 None:intergenic 50.0%
! GGAAGAAGTGTATGGCACCT+AGG - chr8.3:7897168-7897187 None:intergenic 50.0%
! TGATGACGAAGCCACTTGTG+AGG + chr8.3:7899044-7899063 MS.gene58948:CDS 50.0%
!! AGTGTGCCACTTCTTGGCAA+TGG + chr8.3:7899136-7899155 MS.gene58948:CDS 50.0%
CACAACCGATGCATGATCCG+AGG - chr8.3:7896181-7896200 None:intergenic 55.0%
GAAGATGTAGGGGGCAATGG+TGG + chr8.3:7899160-7899179 MS.gene58948:CDS 55.0%
GCAGATTGCGTACGCTCCTT+AGG + chr8.3:7899197-7899216 MS.gene58948:CDS 55.0%
GCATGGCAGGGTTTGTGTAC+TGG + chr8.3:7896383-7896402 MS.gene58948:intron 55.0%
GGAGAAGATGTAGGGGGCAA+TGG + chr8.3:7899157-7899176 MS.gene58948:CDS 55.0%
TACAGCCTGGTGTTCGGAGA+AGG + chr8.3:7897468-7897487 MS.gene58948:CDS 55.0%
! AGGAGCGTACGCAATCTGCT+TGG - chr8.3:7899196-7899215 None:intergenic 55.0%
! CAGGTGACAATTTGGTGGGC+TGG + chr8.3:7898627-7898646 MS.gene58948:intron 55.0%
! TGATTTCGGGCTAGATGGCG+GGG - chr8.3:7899113-7899132 None:intergenic 55.0%
AAACCCCGGCCACCAAAGAC+AGG - chr8.3:7899280-7899299 None:intergenic 60.0%
CAGACACTCTACAGACCGCG+AGG + chr8.3:7897864-7897883 MS.gene58948:intron 60.0%
CGCGCTCACTCGTCACACAT+AGG + chr8.3:7896719-7896738 MS.gene58948:intron 60.0%
CTACGCCTTCTCCGAACACC+AGG - chr8.3:7897476-7897495 None:intergenic 60.0%
! GCGCCGATGATCTGTCTCAC+AGG + chr8.3:7898608-7898627 MS.gene58948:intron 60.0%
! TGCGACCTGTCTTTGGTGGC+CGG + chr8.3:7899272-7899291 MS.gene58948:CDS 60.0%
! CGACCTGTCTTTGGTGGCCG+GGG + chr8.3:7899274-7899293 MS.gene58948:CDS 65.0%
! GCGACCTGTCTTTGGTGGCC+GGG + chr8.3:7899273-7899292 MS.gene58948:CDS 65.0%
!! TGGTGGGCTGGTCTCATGCG+TGG + chr8.3:7898639-7898658 MS.gene58948:CDS 65.0%
!! TTCGGGCTAGATGGCGGGGA+CGG - chr8.3:7899109-7899128 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 7896132 7899330 7896132 ID=MS.gene58948
chr8.3 mRNA 7896132 7899330 7896132 ID=MS.gene58948.t1;Parent=MS.gene58948
chr8.3 exon 7896132 7896302 7896132 ID=MS.gene58948.t1.exon1;Parent=MS.gene58948.t1
chr8.3 CDS 7896132 7896302 7896132 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7896392 7896510 7896392 ID=MS.gene58948.t1.exon2;Parent=MS.gene58948.t1
chr8.3 CDS 7896392 7896510 7896392 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7896846 7896943 7896846 ID=MS.gene58948.t1.exon3;Parent=MS.gene58948.t1
chr8.3 CDS 7896846 7896943 7896846 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7897170 7897229 7897170 ID=MS.gene58948.t1.exon4;Parent=MS.gene58948.t1
chr8.3 CDS 7897170 7897229 7897170 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7897321 7897367 7897321 ID=MS.gene58948.t1.exon5;Parent=MS.gene58948.t1
chr8.3 CDS 7897321 7897367 7897321 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7897438 7897632 7897438 ID=MS.gene58948.t1.exon6;Parent=MS.gene58948.t1
chr8.3 CDS 7897438 7897632 7897438 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7897725 7897780 7897725 ID=MS.gene58948.t1.exon7;Parent=MS.gene58948.t1
chr8.3 CDS 7897725 7897780 7897725 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7897867 7897933 7897867 ID=MS.gene58948.t1.exon8;Parent=MS.gene58948.t1
chr8.3 CDS 7897867 7897933 7897867 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7898025 7898125 7898025 ID=MS.gene58948.t1.exon9;Parent=MS.gene58948.t1
chr8.3 CDS 7898025 7898125 7898025 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7898211 7898312 7898211 ID=MS.gene58948.t1.exon10;Parent=MS.gene58948.t1
chr8.3 CDS 7898211 7898312 7898211 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7898400 7898538 7898400 ID=MS.gene58948.t1.exon11;Parent=MS.gene58948.t1
chr8.3 CDS 7898400 7898538 7898400 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7898630 7898692 7898630 ID=MS.gene58948.t1.exon12;Parent=MS.gene58948.t1
chr8.3 CDS 7898630 7898692 7898630 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7898774 7898857 7898774 ID=MS.gene58948.t1.exon13;Parent=MS.gene58948.t1
chr8.3 CDS 7898774 7898857 7898774 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3 exon 7899034 7899330 7899034 ID=MS.gene58948.t1.exon14;Parent=MS.gene58948.t1
chr8.3 CDS 7899034 7899330 7899034 ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
Gene Sequence

>MS.gene58948

ATGGTTGGAGGAGGAGCTTTATACGAGAAACTAACGACGATGATGACCTCGGATCATGCATCGGTTGTGTCACTCAACATATTTGTTGCTCTTCTTTGTACTTGTATCGTCATTGGTCATTTGTTGGAGGAGAACCGTTGGATTAATGAATCCATCACTGCTCTTCTCATTGTAAGTACTAAGTAGTAATATTATGTTCTTCATCAATAATCAAATATACTATGCTTTCATTGTATGATATATTATTGATGGCATGGCAGGGTTTGTGTACTGGAGTGTTAATTTTGTTTACAACTGGAGGAAGAAGCTCTCATATAATGGTTTTCAGTGAAGATCTTTTCTTTATTTACCTTCTCCCACCCATCATTTTCAATGCAGGGTCTCTTTTTTACTCTTCCTTTATTTGTATTTACAATCCATATAAAACTTTTTTACATATACATTTAATCAAATCATATTTGCGCCTTTGCAAAAATAAAATTAAACAATGTAGATATTTGAAAGGATATTCTGAGAACAACATAACAAAGTGACATATTGGCATTATAGTATGATTTGATTAGAAACACTAAAATAAAGTGTTGTTGCGCGCTCACTCGTCACACATAGGAATTACTGTAATCTAATCTCTTAATATTTACTTTTAACTGTGCTGTTTTAAGATAATTGCATGATTCTGACTTCATTTGCTCTGTTATTCTTTATCCATCTTAGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTTTTTGGTGCAATTGGTACACTCATATCATTCTGCATTATATCACTAGGTAATTAATTTGACTAACTCTATGCCTCTACTTTCTATACCATCAATCAATTTTATCAATTGAGAATTCATAACAAATACTTGTTTTGATAAGACTTTGGATCAAAATGTGGCGTCACGTTCTCTATTACTGTAACATTATTTGTCCCTAACCAACACATTTTGTGTGTGATAATTTGTCTAAATTAATACTAACTCGTTTATTATCTGTTATTTATTTTGCCTAGGTGCCATACACTTCTTCCAAAAATTAGATATTGGTTCCCTCAAGATTGGAGATTATCTAGGTATATACTCTATATATGATTATCTGATGATTTAATGTTGGACTTATCCACAAATATGAACACTTACCTTATCTTCTTCTACTGAATGCAGCAATTGGAGCAATATTCTCAGCAACAGATTCTGTGTGCACATTGCAGGTATAAATTTCAATACATTTTTCGCTCTTTACACAGCATTTATTTGATATTATCTATATGTATGCATCAGGTTCTTAATCAGGATGAAACACCTTTACTATACAGCCTGGTGTTCGGAGAAGGCGTAGTAAATGATGCTACTTCTATAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAACCACTGCTTTACATTTATTAGGAAACTTTTTATATTTGTTCATAGCAAGCACTGTCTTGGGAATCTTTGTAAGTGTTTCTTTGACTCTTCAATCTTGTCCCCTTGTCTCTTCTATTGTTTGCTTGTGACTTAAGTAACTGTTTTTTCTGATATTTTTTAGGTTGGATTGTTTAGCGCATACATTATTAAAAGGCTCTATTTTGGCAAGTTGATAAGGTGGATTAGTTCGGGCATTTTTCAGAAATTGTTTTAGCATATAGTTAGTGATTTTCTAATTTATTTATTTTTTGGACAAATGTCAGACACTCTACAGACCGCGAGGTTGCTCTAATGATACTAATGGCTTATCTTTCATATATGCTAGCTGAAGTAAGATTTTTTTTCTGGAAATTGAGTCGATGCTTTACTATAATATTGTAACTGATTCTAGTACTGATCGTTTTTATTATTTCTTTGGCAGCTATTTTCTTTTAGTGCCATTCTGACTGTGTTCTTCTGCGGCATTCTTATGTCACATTATACCTGGCATAATGTGACAGAAAGTTCAAGAATAACAACAAAGTACGTTAAATTGTCCAACATATTTACATTAGTATAAAGATTGATACTAATTTGAAAGTTATTTTATATAATCACTCTGCTGCAGGCATACTTTTGCTACTATGTCATTCATTGCTGAGATATTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATGGAGAAGTGGCGATTTGTAAGTCAAAGGTATAAAGATTTTTAGATTGATGGAGTCGATAAACTGACTTGAAATTACTGTCAGATGTGAAATTAACATTGTGGTCTCTTCATTAGCCCAAAAAAATCAATTGGGGTCAGTTCATTGTTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTCTCCTTCATATCCAACTTGTCTAAGAAGTCTCAATCTGAGAAAATTGAGTTTAAGCAACAAGTAAGTATCTTCTCATTTCCATTTCAAGATCTTCATAGCTGAGTGAGTCATTTGATGTATTGCACTTTCGCGCCGATGATCTGTCTCACAGGTGACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATTGCACTTGCTTACAATCAGGTGAAAGATCAAACTTCATAGCTTCCAGTTCAACATCCTGAAAGAATTGACTCATACTAATAAACACTTTCTTACATGCAGTTTACAAGACTAGGACATACTAAATTGCGCGAGAATGCCATCATGATCACTAGTACTATTACAGTTGTACTCTTCAGCACAGTGGTTAGACTCTACTCAATTAAATGGCACATTAATATAGATTAGGAGAAGTGTCATTTTCACATTAAGTAAAAGTAAATAGACCTGTATACAAGTGACAGTGACACTCCATCATAACTAGGAATGTTAAAAGGAGAAAAAGTTACCAAATATTGTCTTGAACATTTGAAATTGTGCAGGTGTTTGGGTTGATGACGAAGCCACTTGTGAGGTTATTGCTACCTTCTTCTAAACACATACTAATCAGCATACCGTCCCCGCCATCTAGCCCGAAATCATTCAGTGTGCCACTTCTTGGCAATGGAGAAGATGTAGGGGGCAATGGTGGTACCCAAAGACCAAGCAGATTGCGTACGCTCCTTAGGATTCCTAGTCATGGGGTACATCACTACTGGCGCAAATTTGATGATTCTTTCATGCGACCTGTCTTTGGTGGCCGGGGTTTTGTACCTTATGTTCCTGGTTCACCCCTTTAA

Protein sequence

>MS.gene58948.t1

MVGGGALYEKLTTMMTSDHASVVSLNIFVALLCTCIVIGHLLEENRWINESITALLIGLCTGVLILFTTGGRSSHIMVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQKLDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFKAIQNFDLSHIDLTTALHLLGNFLYLFIASTVLGIFVGLFSAYIIKRLYFGKLIRHSTDREVALMILMAYLSYMLAELFSFSAILTVFFCGILMSHYTWHNVTESSRITTKHTFATMSFIAEIFIFLYVGMDALDMEKWRFVSQSPKKSIGVSSLLLALILVGRAAFVFPLSFISNLSKKSQSEKIEFKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTVVFGLMTKPLVRLLLPSSKHILISIPSPPSSPKSFSVPLLGNGEDVGGNGGTQRPSRLRTLLRIPSHGVHHYWRKFDDSFMRPVFGGRGFVPYVPGSPL