AlfalfaGEDB | MS.gene58948

M. sativa cultivar XinJiangDaYe / MS.gene58948

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006885 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015078 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015491 GO:0015672 GO:0016021 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0042592 GO:0046873 GO:0048878 GO:0050801 GO:0051139 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:0110165
PFAM: PF00999.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58948.t1	XP_024638068.1	99.2	532	4	0	1	532	1	532	3.40E-293	1016.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58948.t1	Q68KI4	73.3	528	135	3	6	531	4	527	2.9e-216	752.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58948.t1	A0A396IF47	99.2	532	4	0	1	532	1	532	2.4e-293	1016.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049989	MS.gene58948	0.815246	1.02E-51	-1.69E-46
MS.gene052308	MS.gene58948	0.800597	1.34E-48	-1.69E-46
MS.gene052367	MS.gene58948	0.82339	1.42E-53	-1.69E-46
MS.gene053348	MS.gene58948	0.842793	2.08E-58	-1.69E-46
MS.gene054551	MS.gene58948	0.819021	1.45E-52	-1.69E-46
MS.gene054593	MS.gene58948	0.812517	4.07E-51	-1.69E-46
MS.gene054941	MS.gene58948	0.808664	2.77E-50	-1.69E-46
MS.gene055308	MS.gene58948	0.834281	3.28E-56	-1.69E-46
MS.gene055578	MS.gene58948	0.819834	9.43E-53	-1.69E-46
MS.gene055957	MS.gene58948	0.81428	1.67E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58948.t1	MTR_4g118770	98.684	532	4	1	1	532	1	529	0.0	1056
MS.gene58948.t1	MTR_1g081900	74.858	529	127	2	6	531	7	532	0.0	805
MS.gene58948.t1	MTR_7g114250	69.963	536	143	4	9	531	4	534	0.0	760
MS.gene58948.t1	MTR_1g082440	63.281	512	181	3	22	531	23	529	0.0	665
MS.gene58948.t1	MTR_1g082450	60.536	522	197	5	12	532	12	525	0.0	629
MS.gene58948.t1	MTR_3g055600	61.297	509	189	5	15	520	21	524	0.0	608
MS.gene58948.t1	MTR_2g028230	31.753	485	269	18	17	488	20	455	9.12e-38	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene58948.t1	AT3G05030	72.897	535	133	4	5	531	5	535	795
MS.gene58948.t1	AT3G05030	72.897	535	133	4	5	531	5	535	795
MS.gene58948.t1	AT3G05030	72.897	535	133	4	5	531	5	535	795
MS.gene58948.t1	AT5G27150	73.295	528	135	3	6	531	4	527	778
MS.gene58948.t1	AT3G06370	70.019	537	150	3	1	532	2	532	738
MS.gene58948.t1	AT3G06370	70.019	537	150	3	1	532	2	532	738
MS.gene58948.t1	AT3G06370	76.600	453	103	1	1	453	2	451	689
MS.gene58948.t1	AT3G05030	77.958	431	92	1	5	435	5	432	689
MS.gene58948.t1	AT3G06370	74.702	419	101	2	1	417	2	417	626
MS.gene58948.t1	AT5G55470	59.309	521	202	6	6	520	4	520	601

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Find 113 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCCGGCCACCAAAGAC+AGG	0.549989	8.3:-7899277	None:intergenic
AACACCAGGCTGTATAGTAA+AGG	0.575684	8.3:-7897459	None:intergenic
AACACCTTTACTATACAGCC+TGG	0.616257	8.3:+7897455	MS.gene58948:CDS
AAGCAGTGGTTAAGTCAATG+TGG	0.629476	8.3:-7897551	None:intergenic
AAGTTGGATATGAAGGAGAG+AGG	0.498871	8.3:-7898473	None:intergenic
AATAGTACTAGTGATCATGA+TGG	0.594448	8.3:-7898811	None:intergenic
AATGATTTCGGGCTAGATGG+CGG	0.600704	8.3:-7899112	None:intergenic
ACCACTGCTTTACATTTATT+AGG	0.251026	8.3:+7897564	MS.gene58948:CDS
ACGCAATCTGCTTGGTCTTT+GGG	0.311048	8.3:-7899185	None:intergenic
ACTAACGACGATGATGACCT+CGG	0.666950	8.3:+7896161	MS.gene58948:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAAGTGTTCATATTTG+TGG	-	chr8.3:7897280-7897299	None:intergenic	30.0%
AATAGTACTAGTGATCATGA+TGG	-	chr8.3:7898814-7898833	None:intergenic	30.0%
ACCACTGCTTTACATTTATT+AGG	+	chr8.3:7897564-7897583	MS.gene58948:CDS	30.0%
CAGATGTGAAATTAACATTG+TGG	+	chr8.3:7898365-7898384	MS.gene58948:intron	30.0%
TAAGACTTTGGATCAAAATG+TGG	+	chr8.3:7897033-7897052	MS.gene58948:intron	30.0%
TAGATAATCTCCAATCTTGA+GGG	-	chr8.3:7897209-7897228	None:intergenic	30.0%
TAGCCCAAAAAAATCAATTG+GGG	+	chr8.3:7898397-7898416	MS.gene58948:intron	30.0%
TAGTATGAGTCAATTCTTTC+AGG	-	chr8.3:7898732-7898751	None:intergenic	30.0%
TCATTCTGCATTATATCACT+AGG	+	chr8.3:7896922-7896941	MS.gene58948:CDS	30.0%
TCCTAATAAATGTAAAGCAG+TGG	-	chr8.3:7897568-7897587	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	7896132	7899330	7896132	ID=MS.gene58948
chr8.3	mRNA	7896132	7899330	7896132	ID=MS.gene58948.t1;Parent=MS.gene58948
chr8.3	exon	7896132	7896302	7896132	ID=MS.gene58948.t1.exon1;Parent=MS.gene58948.t1
chr8.3	CDS	7896132	7896302	7896132	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7896392	7896510	7896392	ID=MS.gene58948.t1.exon2;Parent=MS.gene58948.t1
chr8.3	CDS	7896392	7896510	7896392	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7896846	7896943	7896846	ID=MS.gene58948.t1.exon3;Parent=MS.gene58948.t1
chr8.3	CDS	7896846	7896943	7896846	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7897170	7897229	7897170	ID=MS.gene58948.t1.exon4;Parent=MS.gene58948.t1
chr8.3	CDS	7897170	7897229	7897170	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7897321	7897367	7897321	ID=MS.gene58948.t1.exon5;Parent=MS.gene58948.t1
chr8.3	CDS	7897321	7897367	7897321	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7897438	7897632	7897438	ID=MS.gene58948.t1.exon6;Parent=MS.gene58948.t1
chr8.3	CDS	7897438	7897632	7897438	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7897725	7897780	7897725	ID=MS.gene58948.t1.exon7;Parent=MS.gene58948.t1
chr8.3	CDS	7897725	7897780	7897725	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7897867	7897933	7897867	ID=MS.gene58948.t1.exon8;Parent=MS.gene58948.t1
chr8.3	CDS	7897867	7897933	7897867	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7898025	7898125	7898025	ID=MS.gene58948.t1.exon9;Parent=MS.gene58948.t1
chr8.3	CDS	7898025	7898125	7898025	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7898211	7898312	7898211	ID=MS.gene58948.t1.exon10;Parent=MS.gene58948.t1
chr8.3	CDS	7898211	7898312	7898211	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7898400	7898538	7898400	ID=MS.gene58948.t1.exon11;Parent=MS.gene58948.t1
chr8.3	CDS	7898400	7898538	7898400	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7898630	7898692	7898630	ID=MS.gene58948.t1.exon12;Parent=MS.gene58948.t1
chr8.3	CDS	7898630	7898692	7898630	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7898774	7898857	7898774	ID=MS.gene58948.t1.exon13;Parent=MS.gene58948.t1
chr8.3	CDS	7898774	7898857	7898774	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1
chr8.3	exon	7899034	7899330	7899034	ID=MS.gene58948.t1.exon14;Parent=MS.gene58948.t1
chr8.3	CDS	7899034	7899330	7899034	ID=cds.MS.gene58948.t1;Parent=MS.gene58948.t1

Gene Sequence

>MS.gene58948

ATGGTTGGAGGAGGAGCTTTATACGAGAAACTAACGACGATGATGACCTCGGATCATGCATCGGTTGTGTCACTCAACATATTTGTTGCTCTTCTTTGTACTTGTATCGTCATTGGTCATTTGTTGGAGGAGAACCGTTGGATTAATGAATCCATCACTGCTCTTCTCATTGTAAGTACTAAGTAGTAATATTATGTTCTTCATCAATAATCAAATATACTATGCTTTCATTGTATGATATATTATTGATGGCATGGCAGGGTTTGTGTACTGGAGTGTTAATTTTGTTTACAACTGGAGGAAGAAGCTCTCATATAATGGTTTTCAGTGAAGATCTTTTCTTTATTTACCTTCTCCCACCCATCATTTTCAATGCAGGGTCTCTTTTTTACTCTTCCTTTATTTGTATTTACAATCCATATAAAACTTTTTTACATATACATTTAATCAAATCATATTTGCGCCTTTGCAAAAATAAAATTAAACAATGTAGATATTTGAAAGGATATTCTGAGAACAACATAACAAAGTGACATATTGGCATTATAGTATGATTTGATTAGAAACACTAAAATAAAGTGTTGTTGCGCGCTCACTCGTCACACATAGGAATTACTGTAATCTAATCTCTTAATATTTACTTTTAACTGTGCTGTTTTAAGATAATTGCATGATTCTGACTTCATTTGCTCTGTTATTCTTTATCCATCTTAGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTTTTTGGTGCAATTGGTACACTCATATCATTCTGCATTATATCACTAGGTAATTAATTTGACTAACTCTATGCCTCTACTTTCTATACCATCAATCAATTTTATCAATTGAGAATTCATAACAAATACTTGTTTTGATAAGACTTTGGATCAAAATGTGGCGTCACGTTCTCTATTACTGTAACATTATTTGTCCCTAACCAACACATTTTGTGTGTGATAATTTGTCTAAATTAATACTAACTCGTTTATTATCTGTTATTTATTTTGCCTAGGTGCCATACACTTCTTCCAAAAATTAGATATTGGTTCCCTCAAGATTGGAGATTATCTAGGTATATACTCTATATATGATTATCTGATGATTTAATGTTGGACTTATCCACAAATATGAACACTTACCTTATCTTCTTCTACTGAATGCAGCAATTGGAGCAATATTCTCAGCAACAGATTCTGTGTGCACATTGCAGGTATAAATTTCAATACATTTTTCGCTCTTTACACAGCATTTATTTGATATTATCTATATGTATGCATCAGGTTCTTAATCAGGATGAAACACCTTTACTATACAGCCTGGTGTTCGGAGAAGGCGTAGTAAATGATGCTACTTCTATAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAACCACTGCTTTACATTTATTAGGAAACTTTTTATATTTGTTCATAGCAAGCACTGTCTTGGGAATCTTTGTAAGTGTTTCTTTGACTCTTCAATCTTGTCCCCTTGTCTCTTCTATTGTTTGCTTGTGACTTAAGTAACTGTTTTTTCTGATATTTTTTAGGTTGGATTGTTTAGCGCATACATTATTAAAAGGCTCTATTTTGGCAAGTTGATAAGGTGGATTAGTTCGGGCATTTTTCAGAAATTGTTTTAGCATATAGTTAGTGATTTTCTAATTTATTTATTTTTTGGACAAATGTCAGACACTCTACAGACCGCGAGGTTGCTCTAATGATACTAATGGCTTATCTTTCATATATGCTAGCTGAAGTAAGATTTTTTTTCTGGAAATTGAGTCGATGCTTTACTATAATATTGTAACTGATTCTAGTACTGATCGTTTTTATTATTTCTTTGGCAGCTATTTTCTTTTAGTGCCATTCTGACTGTGTTCTTCTGCGGCATTCTTATGTCACATTATACCTGGCATAATGTGACAGAAAGTTCAAGAATAACAACAAAGTACGTTAAATTGTCCAACATATTTACATTAGTATAAAGATTGATACTAATTTGAAAGTTATTTTATATAATCACTCTGCTGCAGGCATACTTTTGCTACTATGTCATTCATTGCTGAGATATTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATGGAGAAGTGGCGATTTGTAAGTCAAAGGTATAAAGATTTTTAGATTGATGGAGTCGATAAACTGACTTGAAATTACTGTCAGATGTGAAATTAACATTGTGGTCTCTTCATTAGCCCAAAAAAATCAATTGGGGTCAGTTCATTGTTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTCTCCTTCATATCCAACTTGTCTAAGAAGTCTCAATCTGAGAAAATTGAGTTTAAGCAACAAGTAAGTATCTTCTCATTTCCATTTCAAGATCTTCATAGCTGAGTGAGTCATTTGATGTATTGCACTTTCGCGCCGATGATCTGTCTCACAGGTGACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATTGCACTTGCTTACAATCAGGTGAAAGATCAAACTTCATAGCTTCCAGTTCAACATCCTGAAAGAATTGACTCATACTAATAAACACTTTCTTACATGCAGTTTACAAGACTAGGACATACTAAATTGCGCGAGAATGCCATCATGATCACTAGTACTATTACAGTTGTACTCTTCAGCACAGTGGTTAGACTCTACTCAATTAAATGGCACATTAATATAGATTAGGAGAAGTGTCATTTTCACATTAAGTAAAAGTAAATAGACCTGTATACAAGTGACAGTGACACTCCATCATAACTAGGAATGTTAAAAGGAGAAAAAGTTACCAAATATTGTCTTGAACATTTGAAATTGTGCAGGTGTTTGGGTTGATGACGAAGCCACTTGTGAGGTTATTGCTACCTTCTTCTAAACACATACTAATCAGCATACCGTCCCCGCCATCTAGCCCGAAATCATTCAGTGTGCCACTTCTTGGCAATGGAGAAGATGTAGGGGGCAATGGTGGTACCCAAAGACCAAGCAGATTGCGTACGCTCCTTAGGATTCCTAGTCATGGGGTACATCACTACTGGCGCAAATTTGATGATTCTTTCATGCGACCTGTCTTTGGTGGCCGGGGTTTTGTACCTTATGTTCCTGGTTCACCCCTTTAA

Protein sequence

>MS.gene58948.t1

MVGGGALYEKLTTMMTSDHASVVSLNIFVALLCTCIVIGHLLEENRWINESITALLIGLCTGVLILFTTGGRSSHIMVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQKLDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFKAIQNFDLSHIDLTTALHLLGNFLYLFIASTVLGIFVGLFSAYIIKRLYFGKLIRHSTDREVALMILMAYLSYMLAELFSFSAILTVFFCGILMSHYTWHNVTESSRITTKHTFATMSFIAEIFIFLYVGMDALDMEKWRFVSQSPKKSIGVSSLLLALILVGRAAFVFPLSFISNLSKKSQSEKIEFKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTVVFGLMTKPLVRLLLPSSKHILISIPSPPSSPKSFSVPLLGNGEDVGGNGGTQRPSRLRTLLRIPSHGVHHYWRKFDDSFMRPVFGGRGFVPYVPGSPL