Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59404.t1 | XP_003612065.1 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 4.60E-256 | 893.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59404.t1 | Q9FJZ3 | 66.3 | 436 | 139 | 4 | 2 | 436 | 1 | 429 | 6.3e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59404.t1 | G7KF03 | 98.9 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 3.3e-256 | 893.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene59404 | 0.824144 | 9.46E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene59404 | 0.808952 | 2.40E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene59404 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene049260 | MS.gene59404 | 0.80333 | 3.67E-49 | -1.69E-46 |
| MS.gene050376 | MS.gene59404 | 0.806801 | 6.90E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene59404 | 0.821383 | 4.16E-53 | -1.69E-46 |
| MS.gene051265 | MS.gene59404 | 0.80021 | 1.60E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene59404 | 0.805043 | 1.61E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene59404 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene59404 | 0.800335 | 1.51E-48 | -1.69E-46 |
| MS.gene05510 | MS.gene59404 | 0.804778 | 1.83E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene59404 | 0.839343 | 1.68E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene59404 | 0.854808 | 9.62E-62 | -1.69E-46 |
| MS.gene055608 | MS.gene59404 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene055804 | MS.gene59404 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene59404 | 0.847844 | 8.94E-60 | -1.69E-46 |
| MS.gene059128 | MS.gene59404 | 0.846318 | 2.34E-59 | -1.69E-46 |
| MS.gene060137 | MS.gene59404 | -0.814723 | 1.33E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene59404 | 0.811391 | 7.17E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene59404 | 0.803794 | 2.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065919 | MS.gene59404 | PPI |
| MS.gene031718 | MS.gene59404 | PPI |
| MS.gene59404 | MS.gene83173 | PPI |
| MS.gene59404 | MS.gene006591 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59404.t1 | MTR_5g020890 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 901 |
| MS.gene59404.t1 | MTR_3g112060 | 64.678 | 419 | 137 | 6 | 2 | 418 | 1 | 410 | 0.0 | 549 |
| MS.gene59404.t1 | MTR_1g085430 | 57.179 | 397 | 166 | 2 | 7 | 403 | 11 | 403 | 2.75e-165 | 471 |
| MS.gene59404.t1 | MTR_1g085420 | 57.252 | 393 | 164 | 2 | 11 | 403 | 15 | 403 | 2.72e-163 | 466 |
| MS.gene59404.t1 | MTR_1g085310 | 56.061 | 396 | 168 | 4 | 9 | 404 | 11 | 400 | 1.32e-162 | 464 |
| MS.gene59404.t1 | MTR_4g043760 | 57.182 | 369 | 156 | 2 | 31 | 399 | 34 | 400 | 2.62e-160 | 458 |
| MS.gene59404.t1 | MTR_1g085350 | 54.453 | 393 | 173 | 4 | 11 | 403 | 72 | 458 | 1.14e-154 | 446 |
| MS.gene59404.t1 | MTR_7g111740 | 54.987 | 371 | 162 | 3 | 29 | 399 | 60 | 425 | 7.97e-150 | 432 |
| MS.gene59404.t1 | MTR_7g073620 | 51.958 | 383 | 181 | 2 | 31 | 411 | 11 | 392 | 1.84e-146 | 423 |
| MS.gene59404.t1 | MTR_8g005670 | 52.455 | 387 | 181 | 2 | 24 | 408 | 56 | 441 | 3.84e-146 | 424 |
| MS.gene59404.t1 | MTR_7g073550 | 49.383 | 405 | 196 | 3 | 15 | 411 | 37 | 440 | 6.97e-144 | 419 |
| MS.gene59404.t1 | MTR_7g073550 | 50.914 | 383 | 185 | 2 | 31 | 411 | 58 | 439 | 8.85e-144 | 418 |
| MS.gene59404.t1 | MTR_1g085320 | 51.372 | 401 | 172 | 5 | 5 | 403 | 8 | 387 | 1.07e-143 | 416 |
| MS.gene59404.t1 | MTR_8g005270 | 51.421 | 387 | 185 | 2 | 24 | 408 | 39 | 424 | 9.33e-143 | 415 |
| MS.gene59404.t1 | MTR_8g006550 | 51.421 | 387 | 185 | 2 | 24 | 408 | 59 | 444 | 1.55e-142 | 415 |
| MS.gene59404.t1 | MTR_2g090390 | 46.791 | 374 | 195 | 2 | 30 | 399 | 39 | 412 | 2.53e-127 | 375 |
| MS.gene59404.t1 | MTR_4g078230 | 43.236 | 377 | 211 | 1 | 31 | 404 | 39 | 415 | 7.66e-118 | 351 |
| MS.gene59404.t1 | MTR_0005s0150 | 55.517 | 290 | 127 | 2 | 110 | 399 | 14 | 301 | 2.65e-117 | 345 |
| MS.gene59404.t1 | MTR_7g073320 | 33.333 | 117 | 64 | 1 | 295 | 411 | 17 | 119 | 5.40e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59404.t1 | AT5G66460 | 66.284 | 436 | 139 | 4 | 2 | 436 | 1 | 429 | 0.0 | 592 |
| MS.gene59404.t1 | AT3G10890 | 53.580 | 405 | 184 | 4 | 2 | 403 | 1 | 404 | 1.86e-168 | 479 |
| MS.gene59404.t1 | AT3G10900 | 54.568 | 405 | 177 | 6 | 2 | 402 | 1 | 402 | 1.65e-160 | 459 |
| MS.gene59404.t1 | AT5G01930 | 50.758 | 396 | 189 | 3 | 15 | 405 | 28 | 422 | 9.95e-148 | 428 |
| MS.gene59404.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 24 | 397 | 2.50e-134 | 392 |
| MS.gene59404.t1 | AT1G02310 | 52.368 | 380 | 169 | 5 | 26 | 399 | 44 | 417 | 5.84e-134 | 392 |
| MS.gene59404.t1 | AT2G20680 | 46.133 | 375 | 200 | 1 | 30 | 402 | 41 | 415 | 6.81e-125 | 369 |
| MS.gene59404.t1 | AT4G28320 | 45.699 | 372 | 200 | 1 | 30 | 399 | 40 | 411 | 2.25e-124 | 368 |
| MS.gene59404.t1 | AT3G30540 | 48.333 | 360 | 140 | 7 | 2 | 355 | 1 | 320 | 5.84e-115 | 340 |
Find 90 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAATGAACAAATGTTTA+AGG | 0.138199 | 5.4:+12768274 | MS.gene59404:CDS |
| GGCATTCATTTCATGTTAAA+TGG | 0.157356 | 5.4:+12768071 | MS.gene59404:CDS |
| CCAATTCTAGTAGCAGAATT+TGG | 0.190502 | 5.4:+12770570 | MS.gene59404:CDS |
| GGAAAATCATTTAAAGATTC+AGG | 0.202299 | 5.4:+12770591 | MS.gene59404:CDS |
| TTGCATAAATCTTCCGAATA+AGG | 0.205768 | 5.4:-12770821 | None:intergenic |
| TTTAGGAACCCTGTTGTTAA+AGG | 0.213923 | 5.4:+12768725 | MS.gene59404:CDS |
| CAAATGGCTTTAATGCTTAC+TGG | 0.225498 | 5.4:+12768108 | MS.gene59404:CDS |
| GTGAACAATTATGAGAGTTT+TGG | 0.256433 | 5.4:+12768632 | MS.gene59404:CDS |
| CCAAATTCTGCTACTAGAAT+TGG | 0.275704 | 5.4:-12770570 | None:intergenic |
| CATTGATAGGAATCACTTAT+TGG | 0.286976 | 5.4:+12769914 | MS.gene59404:CDS |
| GTTAATAGTAGGATTGAATT+TGG | 0.289349 | 5.4:-12769982 | None:intergenic |
| GGAAATAGAGGAAGACAAAT+TGG | 0.293388 | 5.4:+12770909 | MS.gene59404:CDS |
| CATCAGATGATGATTTCTTT+AGG | 0.293457 | 5.4:+12768708 | MS.gene59404:CDS |
| TGATATTGAAACACTCTTGA+TGG | 0.294230 | 5.4:-12768010 | None:intergenic |
| CTCATAAACTATACCTTATT+CGG | 0.322951 | 5.4:+12770808 | MS.gene59404:CDS |
| CAGCGAGTGGAGCATTGTTC+TGG | 0.358097 | 5.4:+12770691 | MS.gene59404:CDS |
| ACACTCTTGATGGACCAAAA+TGG | 0.361828 | 5.4:-12768000 | None:intergenic |
| TTAAAGCCATTTGCATAGTA+AGG | 0.366576 | 5.4:-12768098 | None:intergenic |
| CTTTAGTGAAGTCCATTGAT+AGG | 0.370341 | 5.4:+12769901 | MS.gene59404:CDS |
| GATATATGCGTCTGCGAAAA+GGG | 0.371629 | 5.4:+12770662 | MS.gene59404:CDS |
| GACTTACTGTTGCTAGAACT+TGG | 0.374694 | 5.4:+12768204 | MS.gene59404:CDS |
| TGATCCATCTCAGAGATTCA+AGG | 0.381469 | 5.4:+12768148 | MS.gene59404:CDS |
| AACTGGGCTAGAAGTAATAA+TGG | 0.393024 | 5.4:+12768674 | MS.gene59404:CDS |
| AGCTCCCATGCCATGATTGT+TGG | 0.395030 | 5.4:-12769297 | None:intergenic |
| ATGTAGAAACCTTTAACAAC+AGG | 0.395168 | 5.4:-12768734 | None:intergenic |
| GATGCCTGGGATTCGATTGT+TGG | 0.395930 | 5.4:-12770027 | None:intergenic |
| TTTCTACATCAATCATGTTA+AGG | 0.399179 | 5.4:+12768748 | MS.gene59404:CDS |
| TCCTTCAGGAAGGACTATTC+AGG | 0.416711 | 5.4:+12769347 | MS.gene59404:CDS |
| GTCCATGGCTTGTTGCTTCA+CGG | 0.424293 | 5.4:-12768184 | None:intergenic |
| AGATATATGCGTCTGCGAAA+AGG | 0.430041 | 5.4:+12770661 | MS.gene59404:CDS |
| TTATTGGAAGCTGGACTTGA+AGG | 0.430930 | 5.4:+12769930 | MS.gene59404:CDS |
| AGGTGTACGTCAGATCCTTC+AGG | 0.440657 | 5.4:+12769333 | MS.gene59404:CDS |
| TATTGAAAAGTTGATCTCTC+TGG | 0.448941 | 5.4:-12770626 | None:intergenic |
| GGAAGAAGCAGTATGTGAAC+TGG | 0.448948 | 5.4:+12768657 | MS.gene59404:CDS |
| TGGAAAAGAGCTAGATTTAA+CGG | 0.453928 | 5.4:+12770864 | MS.gene59404:CDS |
| AGTCCTTTGCAATATTCTCC+TGG | 0.460187 | 5.4:+12768248 | MS.gene59404:CDS |
| GGATTGAATTTGGTCCTTTG+AGG | 0.460580 | 5.4:-12769972 | None:intergenic |
| TTCCACAGACTGTTCTCAAC+AGG | 0.466531 | 5.4:+12769238 | MS.gene59404:intron |
| GGAAATCCTTACTATGCAAA+TGG | 0.467525 | 5.4:+12768092 | MS.gene59404:CDS |
| ATAGGGCTGGATCACGGAAA+TGG | 0.471647 | 5.4:+12769875 | MS.gene59404:intron |
| CAATAAGTGATTCCTATCAA+TGG | 0.476985 | 5.4:-12769913 | None:intergenic |
| AATCCTACTATTAACAACAT+AGG | 0.484474 | 5.4:+12769990 | MS.gene59404:CDS |
| ACGGTTGCAAAATCGATGCC+TGG | 0.487815 | 5.4:-12770041 | None:intergenic |
| GTCCCTATGTTGTTAATAGT+AGG | 0.488737 | 5.4:-12769993 | None:intergenic |
| AGAACTTGGGCTTTCAGTGA+TGG | 0.491493 | 5.4:+12768218 | MS.gene59404:CDS |
| CAAAGATGATCCAACAATCA+TGG | 0.501682 | 5.4:+12769287 | MS.gene59404:CDS |
| AGGAATCACTTATTGGAAGC+TGG | 0.504001 | 5.4:+12769921 | MS.gene59404:CDS |
| GAGCTAGATTTAACGGAAGA+AGG | 0.504274 | 5.4:+12770871 | MS.gene59404:CDS |
| TTAGAGCATATTGTGCGTCT+AGG | 0.506071 | 5.4:-12770542 | None:intergenic |
| ACTTACTGTTGCTAGAACTT+GGG | 0.508850 | 5.4:+12768205 | MS.gene59404:CDS |
| GAATCTTTCGACGATGGCTA+TGG | 0.509733 | 5.4:+12770735 | MS.gene59404:CDS |
| TTCTGGCAACTTCTTACAGA+AGG | 0.511415 | 5.4:+12770708 | MS.gene59404:CDS |
| ATCCTACTATTAACAACATA+GGG | 0.515967 | 5.4:+12769991 | MS.gene59404:CDS |
| GAAACCTTGAATCTCTGAGA+TGG | 0.516474 | 5.4:-12768152 | None:intergenic |
| TTCCGTGAAGCAACAAGCCA+TGG | 0.522141 | 5.4:+12768182 | MS.gene59404:CDS |
| TCACGCGTTGGTGGAAATAG+AGG | 0.525388 | 5.4:+12770897 | MS.gene59404:CDS |
| GCAACTTCTTACAGAAGGAA+TGG | 0.529256 | 5.4:+12770713 | MS.gene59404:CDS |
| TATTGGAAGCTGGACTTGAA+GGG | 0.536131 | 5.4:+12769931 | MS.gene59404:CDS |
| AATATCAATGTAGAAGCTGC+TGG | 0.539763 | 5.4:+12768026 | MS.gene59404:CDS |
| CGGTTGCAAAATCGATGCCT+GGG | 0.543074 | 5.4:-12770040 | None:intergenic |
| CAGAACAATGCTCCACTCGC+TGG | 0.548466 | 5.4:-12770690 | None:intergenic |
| ATTGCCAACAATCGAATCCC+AGG | 0.555801 | 5.4:+12770023 | MS.gene59404:CDS |
| GATGGCTATGGAATATCGCT+TGG | 0.563874 | 5.4:+12770747 | MS.gene59404:CDS |
| TTCATTGTTATCCCGACCAA+TGG | 0.564049 | 5.4:+12770063 | MS.gene59404:CDS |
| ATGATCCAACAATCATGGCA+TGG | 0.566474 | 5.4:+12769292 | MS.gene59404:CDS |
| ATTTGTTCATTGTAGAAACC+AGG | 0.567175 | 5.4:-12768266 | None:intergenic |
| CGCATATATCTTGTAGTACA+CGG | 0.572125 | 5.4:-12770649 | None:intergenic |
| ATATCTGAGGCTAGAAAGCA+TGG | 0.573786 | 5.4:+12768587 | MS.gene59404:CDS |
| AATTAAGCTGATACTAAGCT+TGG | 0.574063 | 5.4:+12768610 | MS.gene59404:CDS |
| TGATCCAACAATCATGGCAT+GGG | 0.574244 | 5.4:+12769293 | MS.gene59404:CDS |
| AGAAGGTCTTCACGCGTTGG+TGG | 0.576835 | 5.4:+12770888 | MS.gene59404:CDS |
| TTCTAGCAACAGTAAGTCCA+TGG | 0.583102 | 5.4:-12768199 | None:intergenic |
| ACTTGGGCTTTCAGTGATGG+TGG | 0.586210 | 5.4:+12768221 | MS.gene59404:CDS |
| AAAAGGGGAGGTCCAGCGAG+TGG | 0.590584 | 5.4:+12770678 | MS.gene59404:CDS |
| GGAAGAAGGTCTTCACGCGT+TGG | 0.594873 | 5.4:+12770885 | MS.gene59404:CDS |
| TTGATTATAGGGCTGGATCA+CGG | 0.597155 | 5.4:+12769869 | MS.gene59404:intron |
| ATGGACAATCAACACCTCAA+AGG | 0.598022 | 5.4:+12769958 | MS.gene59404:CDS |
| AATGTAGAAGCTGCTGGTGA+TGG | 0.601670 | 5.4:+12768032 | MS.gene59404:CDS |
| GAAGAAGCAGTATGTGAACT+GGG | 0.610382 | 5.4:+12768658 | MS.gene59404:CDS |
| ACCTGAATAGTCCTTCCTGA+AGG | 0.619157 | 5.4:-12769348 | None:intergenic |
| ATATATGCGTCTGCGAAAAG+GGG | 0.632807 | 5.4:+12770663 | MS.gene59404:CDS |
| TGTAGAAACCTTTAACAACA+GGG | 0.641407 | 5.4:-12768733 | None:intergenic |
| TATGCGTCTGCGAAAAGGGG+AGG | 0.642345 | 5.4:+12770666 | MS.gene59404:CDS |
| AAACCAGGAGAATATTGCAA+AGG | 0.645714 | 5.4:-12768251 | None:intergenic |
| TTGGTCGGGATAACAATGAA+CGG | 0.658478 | 5.4:-12770060 | None:intergenic |
| GAAGGATCTGACGTACACCT+AGG | 0.660094 | 5.4:-12769330 | None:intergenic |
| GGGAGCTTATGAATGAACCT+AGG | 0.661088 | 5.4:+12769313 | MS.gene59404:CDS |
| GGAATGGAATCTTTCGACGA+TGG | 0.663000 | 5.4:+12770729 | MS.gene59404:CDS |
| AGATCGCTAATGAACGACGA+TGG | 0.665356 | 5.4:+12770844 | MS.gene59404:CDS |
| GTACGTCAGATCCTTCAGGA+AGG | 0.713213 | 5.4:+12769337 | MS.gene59404:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATAATATATACG+AGG | + | chr5.4:12769160-12769179 | MS.gene59404:intron | 10.0% |
| !! | ATTGTAAACAAATTAAAAAT+GGG | - | chr5.4:12770154-12770173 | None:intergenic | 10.0% |
| !!! | TTAAAAATTAATTTTGCATT+TGG | - | chr5.4:12769109-12769128 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAAAAGAAAAAG+GGG | - | chr5.4:12769423-12769442 | None:intergenic | 15.0% |
| !! | AATGATTTAACAATTATGAT+AGG | - | chr5.4:12769589-12769608 | None:intergenic | 15.0% |
| !! | CAAAAAGAAAAAAAGAAAAA+GGG | - | chr5.4:12769424-12769443 | None:intergenic | 15.0% |
| !! | CATTGTAAACAAATTAAAAA+TGG | - | chr5.4:12770155-12770174 | None:intergenic | 15.0% |
| !! | GTTCAATTTAATATATCATT+TGG | + | chr5.4:12768501-12768520 | MS.gene59404:intron | 15.0% |
| !! | TAATTGAAGTATAATTTCTT+TGG | - | chr5.4:12769522-12769541 | None:intergenic | 15.0% |
| !! | TCAAAAAGAAAAAAAGAAAA+AGG | - | chr5.4:12769425-12769444 | None:intergenic | 15.0% |
| !! | TGAATATGAAAATTATCATA+TGG | + | chr5.4:12768813-12768832 | MS.gene59404:intron | 15.0% |
| !! | TTAACTCATAAATAAGAATA+AGG | - | chr5.4:12769017-12769036 | None:intergenic | 15.0% |
| !!! | ACAATTTTCAACTTTTTTTA+CGG | - | chr5.4:12768441-12768460 | None:intergenic | 15.0% |
| !!! | ATTATGAACATTTTTTACAT+AGG | + | chr5.4:12769560-12769579 | MS.gene59404:intron | 15.0% |
| !!! | TATTTTTCATAAACTATTCA+AGG | + | chr5.4:12768302-12768321 | MS.gene59404:intron | 15.0% |
| !! | ACTGTTTAACATTTGATTAT+AGG | + | chr5.4:12769857-12769876 | MS.gene59404:intron | 20.0% |
| !! | CTGTTTAACATTTGATTATA+GGG | + | chr5.4:12769858-12769877 | MS.gene59404:intron | 20.0% |
| !! | TAAAGTCTTACCAATATTAT+TGG | + | chr5.4:12769742-12769761 | MS.gene59404:intron | 20.0% |
| !!! | AAATTAATTTTGCATTTGGA+TGG | - | chr5.4:12769105-12769124 | None:intergenic | 20.0% |
| !!! | ACTATATTTTTAGTTACCAT+TGG | - | chr5.4:12770082-12770101 | None:intergenic | 20.0% |
| !!! | AGCTTTATGTAAAAACTAAA+AGG | - | chr5.4:12768873-12768892 | None:intergenic | 20.0% |
| !!! | ATTTGTTTACAATGCAATTT+TGG | + | chr5.4:12770161-12770180 | MS.gene59404:intron | 20.0% |
| !!! | ATTTTTTTGTCTTAAACTTC+CGG | + | chr5.4:12768463-12768482 | MS.gene59404:intron | 20.0% |
| !!! | TTACATAAAGCTATGTTTTT+AGG | + | chr5.4:12768881-12768900 | MS.gene59404:intron | 20.0% |
| !!! | TTTGATGTAATTTATTTTCC+TGG | + | chr5.4:12769212-12769231 | MS.gene59404:intron | 20.0% |
| !!! | TTTGTTTACAATGCAATTTT+GGG | + | chr5.4:12770162-12770181 | MS.gene59404:intron | 20.0% |
| !!! | TTTTGCTTTGTTATTTCTTT+TGG | + | chr5.4:12767977-12767996 | MS.gene59404:CDS | 20.0% |
| ! | AATCCTACTATTAACAACAT+AGG | + | chr5.4:12769990-12770009 | MS.gene59404:CDS | 25.0% |
| ! | ATCCTACTATTAACAACATA+GGG | + | chr5.4:12769991-12770010 | MS.gene59404:CDS | 25.0% |
| ! | CCAAATGTACATGATTTAAT+TGG | + | chr5.4:12770393-12770412 | MS.gene59404:intron | 25.0% |
| ! | CCAATTAAATCATGTACATT+TGG | - | chr5.4:12770396-12770415 | None:intergenic | 25.0% |
| ! | CCAGTTTACGATTAAAAAAT+AGG | - | chr5.4:12769692-12769711 | None:intergenic | 25.0% |
| ! | CTACAATGAACAAATGTTTA+AGG | + | chr5.4:12768274-12768293 | MS.gene59404:CDS | 25.0% |
| ! | CTCATAAACTATACCTTATT+CGG | + | chr5.4:12770808-12770827 | MS.gene59404:CDS | 25.0% |
| ! | GGAAAATCATTTAAAGATTC+AGG | + | chr5.4:12770591-12770610 | MS.gene59404:CDS | 25.0% |
| ! | GTTAATAGTAGGATTGAATT+TGG | - | chr5.4:12769985-12770004 | None:intergenic | 25.0% |
| ! | GTTTCTACTACCAATAATAT+TGG | - | chr5.4:12769755-12769774 | None:intergenic | 25.0% |
| ! | TTTCTACATCAATCATGTTA+AGG | + | chr5.4:12768748-12768767 | MS.gene59404:CDS | 25.0% |
| !! | GAAACTTTTGCAATATGATT+TGG | + | chr5.4:12769770-12769789 | MS.gene59404:intron | 25.0% |
| !! | TTGTATCTGATTTTCTATGT+TGG | + | chr5.4:12768538-12768557 | MS.gene59404:intron | 25.0% |
| !!! | CCTATTTTTTAATCGTAAAC+TGG | + | chr5.4:12769689-12769708 | MS.gene59404:intron | 25.0% |
| !!! | TATTTTTAGTTACCATTGGT+CGG | - | chr5.4:12770078-12770097 | None:intergenic | 25.0% |
| AAGAAAAAAAGAAAAAGGGG+TGG | - | chr5.4:12769420-12769439 | None:intergenic | 30.0% | |
| AAGTGAATTTGACAGAATCA+TGG | - | chr5.4:12770368-12770387 | None:intergenic | 30.0% | |
| AATTAAGCTGATACTAAGCT+TGG | + | chr5.4:12768610-12768629 | MS.gene59404:CDS | 30.0% | |
| AGATTAATTGGTTGTTGGAT+CGG | - | chr5.4:12769066-12769085 | None:intergenic | 30.0% | |
| ATGTAGAAACCTTTAACAAC+AGG | - | chr5.4:12768737-12768756 | None:intergenic | 30.0% | |
| ATTTGTTCATTGTAGAAACC+AGG | - | chr5.4:12768269-12768288 | None:intergenic | 30.0% | |
| CAATAAGTGATTCCTATCAA+TGG | - | chr5.4:12769916-12769935 | None:intergenic | 30.0% | |
| CATCAGATGATGATTTCTTT+AGG | + | chr5.4:12768708-12768727 | MS.gene59404:CDS | 30.0% | |
| CATTGATAGGAATCACTTAT+TGG | + | chr5.4:12769914-12769933 | MS.gene59404:CDS | 30.0% | |
| GGCATTCATTTCATGTTAAA+TGG | + | chr5.4:12768071-12768090 | MS.gene59404:CDS | 30.0% | |
| TAAATTGAACAATTTCCGCA+GGG | - | chr5.4:12768491-12768510 | None:intergenic | 30.0% | |
| TAATCCAAAGTTAGATTACG+AGG | + | chr5.4:12768388-12768407 | MS.gene59404:intron | 30.0% | |
| TAATCTAACTTTGGATTACG+AGG | - | chr5.4:12768386-12768405 | None:intergenic | 30.0% | |
| TGATATTGAAACACTCTTGA+TGG | - | chr5.4:12768013-12768032 | None:intergenic | 30.0% | |
| TGGAAAAGAGCTAGATTTAA+CGG | + | chr5.4:12770864-12770883 | MS.gene59404:CDS | 30.0% | |
| TGTAGAAACCTTTAACAACA+GGG | - | chr5.4:12768736-12768755 | None:intergenic | 30.0% | |
| TTAAAGCCATTTGCATAGTA+AGG | - | chr5.4:12768101-12768120 | None:intergenic | 30.0% | |
| TTAAATTGAACAATTTCCGC+AGG | - | chr5.4:12768492-12768511 | None:intergenic | 30.0% | |
| TTAACATTTGATTATAGGGC+TGG | + | chr5.4:12769862-12769881 | MS.gene59404:intron | 30.0% | |
| TTGCATAAATCTTCCGAATA+AGG | - | chr5.4:12770824-12770843 | None:intergenic | 30.0% | |
| TTTACCTCGTAATCTAACTT+TGG | - | chr5.4:12768395-12768414 | None:intergenic | 30.0% | |
| TTTCTTTGATTGCACAAACA+GGG | + | chr5.4:12770458-12770477 | MS.gene59404:intron | 30.0% | |
| ! | ATCTGATTTTCTATGTTGGT+TGG | + | chr5.4:12768542-12768561 | MS.gene59404:intron | 30.0% |
| ! | GTGAACAATTATGAGAGTTT+TGG | + | chr5.4:12768632-12768651 | MS.gene59404:CDS | 30.0% |
| ! | TAATTTTGCATTTGGATGGT+GGG | - | chr5.4:12769101-12769120 | None:intergenic | 30.0% |
| ! | TATTGAAAAGTTGATCTCTC+TGG | - | chr5.4:12770629-12770648 | None:intergenic | 30.0% |
| ! | TTAATTTTGCATTTGGATGG+TGG | - | chr5.4:12769102-12769121 | None:intergenic | 30.0% |
| ! | TTTTCTTTGATTGCACAAAC+AGG | + | chr5.4:12770457-12770476 | MS.gene59404:intron | 30.0% |
| !! | AACAATTATGAGAGTTTTGG+AGG | + | chr5.4:12768635-12768654 | MS.gene59404:CDS | 30.0% |
| !! | ATTAGACCTCTGAGATTAAT+TGG | - | chr5.4:12769078-12769097 | None:intergenic | 30.0% |
| !! | GTTGGATTTTGTTATATCTG+AGG | + | chr5.4:12768574-12768593 | MS.gene59404:CDS | 30.0% |
| !!! | ACAATTATGAGAGTTTTGGA+GGG | + | chr5.4:12768636-12768655 | MS.gene59404:CDS | 30.0% |
| !!! | AGGAGTATAGTTTTGTTGTT+AGG | + | chr5.4:12769180-12769199 | MS.gene59404:intron | 30.0% |
| !!! | ATTTTTAGTTACCATTGGTC+GGG | - | chr5.4:12770077-12770096 | None:intergenic | 30.0% |
| !!! | GTTATTTCTTTTGGCCATTT+TGG | + | chr5.4:12767986-12768005 | MS.gene59404:CDS | 30.0% |
| AAACCAGGAGAATATTGCAA+AGG | - | chr5.4:12768254-12768273 | None:intergenic | 35.0% | |
| AATATCAATGTAGAAGCTGC+TGG | + | chr5.4:12768026-12768045 | MS.gene59404:CDS | 35.0% | |
| ACAGTCAATGAGAGGAATAA+AGG | - | chr5.4:12769460-12769479 | None:intergenic | 35.0% | |
| ACTTACTGTTGCTAGAACTT+GGG | + | chr5.4:12768205-12768224 | MS.gene59404:CDS | 35.0% | |
| CAAAGATGATCCAACAATCA+TGG | + | chr5.4:12769287-12769306 | MS.gene59404:CDS | 35.0% | |
| CAACAACCAATTAATCTCAG+AGG | + | chr5.4:12769069-12769088 | MS.gene59404:intron | 35.0% | |
| CCAAATTCTGCTACTAGAAT+TGG | - | chr5.4:12770573-12770592 | None:intergenic | 35.0% | |
| CCAATTCTAGTAGCAGAATT+TGG | + | chr5.4:12770570-12770589 | MS.gene59404:CDS | 35.0% | |
| CGCATATATCTTGTAGTACA+CGG | - | chr5.4:12770652-12770671 | None:intergenic | 35.0% | |
| CTTTAGTGAAGTCCATTGAT+AGG | + | chr5.4:12769901-12769920 | MS.gene59404:CDS | 35.0% | |
| GGAAATAGAGGAAGACAAAT+TGG | + | chr5.4:12770909-12770928 | MS.gene59404:CDS | 35.0% | |
| GGAAATCCTTACTATGCAAA+TGG | + | chr5.4:12768092-12768111 | MS.gene59404:CDS | 35.0% | |
| GTCCCTATGTTGTTAATAGT+AGG | - | chr5.4:12769996-12770015 | None:intergenic | 35.0% | |
| TATAGCATGTCCTTGAAATC+AGG | - | chr5.4:12769817-12769836 | None:intergenic | 35.0% | |
| TCTTAACCATCCTTGAGAAA+GGG | + | chr5.4:12768359-12768378 | MS.gene59404:intron | 35.0% | |
| TGGACAAGTTTCACAAATCA+CGG | + | chr5.4:12769790-12769809 | MS.gene59404:intron | 35.0% | |
| TTTAGGAACCCTGTTGTTAA+AGG | + | chr5.4:12768725-12768744 | MS.gene59404:CDS | 35.0% | |
| ! | AAATGGGAGTTCTCGAATTT+TGG | - | chr5.4:12770138-12770157 | None:intergenic | 35.0% |
| ! | AACAGGTACAACAGTTTTAC+TGG | + | chr5.4:12769255-12769274 | MS.gene59404:CDS | 35.0% |
| ! | AACTGGGCTAGAAGTAATAA+TGG | + | chr5.4:12768674-12768693 | MS.gene59404:CDS | 35.0% |
| ! | AATGGGAGTTCTCGAATTTT+GGG | - | chr5.4:12770137-12770156 | None:intergenic | 35.0% |
| ! | AGCTTGCATTTTTGAACAAC+TGG | + | chr5.4:12770505-12770524 | MS.gene59404:CDS | 35.0% |
| ! | GAACTTCTTTTGTCTTTGCT+TGG | + | chr5.4:12768783-12768802 | MS.gene59404:intron | 35.0% |
| !! | CAAATGGCTTTAATGCTTAC+TGG | + | chr5.4:12768108-12768127 | MS.gene59404:CDS | 35.0% |
| !! | CTCTGAGATTAATTGGTTGT+TGG | - | chr5.4:12769071-12769090 | None:intergenic | 35.0% |
| !! | TCTATGTTGGTTGGTTTGAA+GGG | + | chr5.4:12768551-12768570 | MS.gene59404:intron | 35.0% |
| !! | TTCTATGTTGGTTGGTTTGA+AGG | + | chr5.4:12768550-12768569 | MS.gene59404:intron | 35.0% |
| AGATATATGCGTCTGCGAAA+AGG | + | chr5.4:12770661-12770680 | MS.gene59404:CDS | 40.0% | |
| AGGAATCACTTATTGGAAGC+TGG | + | chr5.4:12769921-12769940 | MS.gene59404:CDS | 40.0% | |
| AGTCCTTTGCAATATTCTCC+TGG | + | chr5.4:12768248-12768267 | MS.gene59404:CDS | 40.0% | |
| ATATATGCGTCTGCGAAAAG+GGG | + | chr5.4:12770663-12770682 | MS.gene59404:CDS | 40.0% | |
| ATGATCCAACAATCATGGCA+TGG | + | chr5.4:12769292-12769311 | MS.gene59404:CDS | 40.0% | |
| ATGGACAATCAACACCTCAA+AGG | + | chr5.4:12769958-12769977 | MS.gene59404:CDS | 40.0% | |
| CATCTATCACAGTCAATGAG+AGG | - | chr5.4:12769468-12769487 | None:intergenic | 40.0% | |
| GAAGAAGCAGTATGTGAACT+GGG | + | chr5.4:12768658-12768677 | MS.gene59404:CDS | 40.0% | |
| GACTTACTGTTGCTAGAACT+TGG | + | chr5.4:12768204-12768223 | MS.gene59404:CDS | 40.0% | |
| GAGCTAGATTTAACGGAAGA+AGG | + | chr5.4:12770871-12770890 | MS.gene59404:CDS | 40.0% | |
| GATATATGCGTCTGCGAAAA+GGG | + | chr5.4:12770662-12770681 | MS.gene59404:CDS | 40.0% | |
| GCAACTTCTTACAGAAGGAA+TGG | + | chr5.4:12770713-12770732 | MS.gene59404:CDS | 40.0% | |
| GGACAAGTTTCACAAATCAC+GGG | + | chr5.4:12769791-12769810 | MS.gene59404:intron | 40.0% | |
| GGATTGAATTTGGTCCTTTG+AGG | - | chr5.4:12769975-12769994 | None:intergenic | 40.0% | |
| GTCTTAACCATCCTTGAGAA+AGG | + | chr5.4:12768358-12768377 | MS.gene59404:intron | 40.0% | |
| TATTGGAAGCTGGACTTGAA+GGG | + | chr5.4:12769931-12769950 | MS.gene59404:CDS | 40.0% | |
| TGATCCAACAATCATGGCAT+GGG | + | chr5.4:12769293-12769312 | MS.gene59404:CDS | 40.0% | |
| TGATCCATCTCAGAGATTCA+AGG | + | chr5.4:12768148-12768167 | MS.gene59404:CDS | 40.0% | |
| TTAGAGCATATTGTGCGTCT+AGG | - | chr5.4:12770545-12770564 | None:intergenic | 40.0% | |
| TTATTGGAAGCTGGACTTGA+AGG | + | chr5.4:12769930-12769949 | MS.gene59404:CDS | 40.0% | |
| TTCATTGTTATCCCGACCAA+TGG | + | chr5.4:12770063-12770082 | MS.gene59404:CDS | 40.0% | |
| TTCTAGCAACAGTAAGTCCA+TGG | - | chr5.4:12768202-12768221 | None:intergenic | 40.0% | |
| TTCTGGCAACTTCTTACAGA+AGG | + | chr5.4:12770708-12770727 | MS.gene59404:CDS | 40.0% | |
| TTGATTATAGGGCTGGATCA+CGG | + | chr5.4:12769869-12769888 | MS.gene59404:intron | 40.0% | |
| TTGGTCGGGATAACAATGAA+CGG | - | chr5.4:12770063-12770082 | None:intergenic | 40.0% | |
| ! | ACACTCTTGATGGACCAAAA+TGG | - | chr5.4:12768003-12768022 | None:intergenic | 40.0% |
| ! | ATATCTGAGGCTAGAAAGCA+TGG | + | chr5.4:12768587-12768606 | MS.gene59404:CDS | 40.0% |
| ! | GAAACCTTGAATCTCTGAGA+TGG | - | chr5.4:12768155-12768174 | None:intergenic | 40.0% |
| ! | TGAGAGGAATAAAGGTGTAG+TGG | - | chr5.4:12769452-12769471 | None:intergenic | 40.0% |
| !! | CTATGTTGGTTGGTTTGAAG+GGG | + | chr5.4:12768552-12768571 | MS.gene59404:intron | 40.0% |
| !!! | GATGGTTTTGTGAGAACAAG+AGG | + | chr5.4:12768050-12768069 | MS.gene59404:CDS | 40.0% |
| AAACAGTCAGACTCAGCTCA+TGG | - | chr5.4:12769844-12769863 | None:intergenic | 45.0% | |
| AAATCACGGGCCTGATTTCA+AGG | + | chr5.4:12769804-12769823 | MS.gene59404:intron | 45.0% | |
| AATGTAGAAGCTGCTGGTGA+TGG | + | chr5.4:12768032-12768051 | MS.gene59404:CDS | 45.0% | |
| ACCTGAATAGTCCTTCCTGA+AGG | - | chr5.4:12769351-12769370 | None:intergenic | 45.0% | |
| AGAACTTGGGCTTTCAGTGA+TGG | + | chr5.4:12768218-12768237 | MS.gene59404:CDS | 45.0% | |
| AGATCGCTAATGAACGACGA+TGG | + | chr5.4:12770844-12770863 | MS.gene59404:CDS | 45.0% | |
| ATTACGAGGACCCTTTCTCA+AGG | - | chr5.4:12768372-12768391 | None:intergenic | 45.0% | |
| ATTGCCAACAATCGAATCCC+AGG | + | chr5.4:12770023-12770042 | MS.gene59404:CDS | 45.0% | |
| GAATCTTTCGACGATGGCTA+TGG | + | chr5.4:12770735-12770754 | MS.gene59404:CDS | 45.0% | |
| GACAGAATCATGGTGAGCTA+TGG | - | chr5.4:12770358-12770377 | None:intergenic | 45.0% | |
| GATGGCTATGGAATATCGCT+TGG | + | chr5.4:12770747-12770766 | MS.gene59404:CDS | 45.0% | |
| GGAAGAAGCAGTATGTGAAC+TGG | + | chr5.4:12768657-12768676 | MS.gene59404:CDS | 45.0% | |
| GGAATGGAATCTTTCGACGA+TGG | + | chr5.4:12770729-12770748 | MS.gene59404:CDS | 45.0% | |
| GGGAGCTTATGAATGAACCT+AGG | + | chr5.4:12769313-12769332 | MS.gene59404:CDS | 45.0% | |
| TACCTGTTGAGAACAGTCTG+TGG | - | chr5.4:12769243-12769262 | None:intergenic | 45.0% | |
| TCCTTCAGGAAGGACTATTC+AGG | + | chr5.4:12769347-12769366 | MS.gene59404:CDS | 45.0% | |
| TTCCACAGACTGTTCTCAAC+AGG | + | chr5.4:12769238-12769257 | MS.gene59404:intron | 45.0% | |
| ! | GCTGGACTTGAAGGGTTTTA+TGG | + | chr5.4:12769939-12769958 | MS.gene59404:CDS | 45.0% |
| ACGGTTGCAAAATCGATGCC+TGG | - | chr5.4:12770044-12770063 | None:intergenic | 50.0% | |
| ACTTGGGCTTTCAGTGATGG+TGG | + | chr5.4:12768221-12768240 | MS.gene59404:CDS | 50.0% | |
| AGCTCCCATGCCATGATTGT+TGG | - | chr5.4:12769300-12769319 | None:intergenic | 50.0% | |
| AGGTGTACGTCAGATCCTTC+AGG | + | chr5.4:12769333-12769352 | MS.gene59404:CDS | 50.0% | |
| ATAGGGCTGGATCACGGAAA+TGG | + | chr5.4:12769875-12769894 | MS.gene59404:intron | 50.0% | |
| CGGTTGCAAAATCGATGCCT+GGG | - | chr5.4:12770043-12770062 | None:intergenic | 50.0% | |
| CTTAAACTTCCGGTTCCCTG+CGG | + | chr5.4:12768473-12768492 | MS.gene59404:intron | 50.0% | |
| GAACAATTTCCGCAGGGAAC+CGG | - | chr5.4:12768485-12768504 | None:intergenic | 50.0% | |
| GAACAGTCTGTGGAAGTTCC+AGG | - | chr5.4:12769233-12769252 | None:intergenic | 50.0% | |
| GAAGGATCTGACGTACACCT+AGG | - | chr5.4:12769333-12769352 | None:intergenic | 50.0% | |
| GATGCCTGGGATTCGATTGT+TGG | - | chr5.4:12770030-12770049 | None:intergenic | 50.0% | |
| GTACGTCAGATCCTTCAGGA+AGG | + | chr5.4:12769337-12769356 | MS.gene59404:CDS | 50.0% | |
| TTCCGTGAAGCAACAAGCCA+TGG | + | chr5.4:12768182-12768201 | MS.gene59404:CDS | 50.0% | |
| ! | TCACGCGTTGGTGGAAATAG+AGG | + | chr5.4:12770897-12770916 | MS.gene59404:CDS | 50.0% |
| !! | GTCCATGGCTTGTTGCTTCA+CGG | - | chr5.4:12768187-12768206 | None:intergenic | 50.0% |
| !! | GTTGGTTGGTTTGAAGGGGT+TGG | + | chr5.4:12768556-12768575 | MS.gene59404:intron | 50.0% |
| AGAAGGTCTTCACGCGTTGG+TGG | + | chr5.4:12770888-12770907 | MS.gene59404:CDS | 55.0% | |
| CAGAACAATGCTCCACTCGC+TGG | - | chr5.4:12770693-12770712 | None:intergenic | 55.0% | |
| CGAGGACCCTTTCTCAAGGA+TGG | - | chr5.4:12768368-12768387 | None:intergenic | 55.0% | |
| GGAAGAAGGTCTTCACGCGT+TGG | + | chr5.4:12770885-12770904 | MS.gene59404:CDS | 55.0% | |
| TATGCGTCTGCGAAAAGGGG+AGG | + | chr5.4:12770666-12770685 | MS.gene59404:CDS | 55.0% | |
| !! | CAGCGAGTGGAGCATTGTTC+TGG | + | chr5.4:12770691-12770710 | MS.gene59404:CDS | 55.0% |
| AAAAGGGGAGGTCCAGCGAG+TGG | + | chr5.4:12770678-12770697 | MS.gene59404:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12767966 | 12770938 | 12767966 | ID=MS.gene59404 |
| chr5.4 | mRNA | 12767966 | 12770938 | 12767966 | ID=MS.gene59404.t1;Parent=MS.gene59404 |
| chr5.4 | exon | 12767966 | 12768295 | 12767966 | ID=MS.gene59404.t1.exon1;Parent=MS.gene59404.t1 |
| chr5.4 | CDS | 12767966 | 12768295 | 12767966 | ID=cds.MS.gene59404.t1;Parent=MS.gene59404.t1 |
| chr5.4 | exon | 12768572 | 12768769 | 12768572 | ID=MS.gene59404.t1.exon2;Parent=MS.gene59404.t1 |
| chr5.4 | CDS | 12768572 | 12768769 | 12768572 | ID=cds.MS.gene59404.t1;Parent=MS.gene59404.t1 |
| chr5.4 | exon | 12769246 | 12769368 | 12769246 | ID=MS.gene59404.t1.exon3;Parent=MS.gene59404.t1 |
| chr5.4 | CDS | 12769246 | 12769368 | 12769246 | ID=cds.MS.gene59404.t1;Parent=MS.gene59404.t1 |
| chr5.4 | exon | 12769879 | 12770084 | 12769879 | ID=MS.gene59404.t1.exon4;Parent=MS.gene59404.t1 |
| chr5.4 | CDS | 12769879 | 12770084 | 12769879 | ID=cds.MS.gene59404.t1;Parent=MS.gene59404.t1 |
| chr5.4 | exon | 12770479 | 12770938 | 12770479 | ID=MS.gene59404.t1.exon5;Parent=MS.gene59404.t1 |
| chr5.4 | CDS | 12770479 | 12770938 | 12770479 | ID=cds.MS.gene59404.t1;Parent=MS.gene59404.t1 |
| Gene Sequence |
| Protein sequence |
